AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411980 MtrunA17_Chr4g0004221 95.748 682 21 3 1 675 1 681 0.0 1311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411980 AT1G80000.4 37.807 693 304 25 8 675 7 597 4.47e-94 304
Msa1411980 AT1G80000.1 37.807 693 304 26 8 675 7 597 4.95e-94 304
Msa1411980 AT1G80000.2 37.807 693 304 26 8 675 7 597 4.95e-94 304
Msa1411980 AT1G80000.3 37.807 693 304 26 8 675 7 597 4.95e-94 304
Msa1411980 AT1G15280.2 33.671 692 321 29 5 676 1 574 1.18e-48 181
Msa1411980 AT1G15280.1 34.104 692 317 29 5 676 1 573 1.49e-47 177

Find 271 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGTGCTGCAGGAGCTTT+AGG 0.093760 tig0023857:+72150 Msa1411980:CDS
TTCAAGAAACTTTGCATAAA+AGG 0.130703 tig0023857:+68693 Msa1411980:five_prime_UTR
CTTCTTGAATTCAGTTAATT+TGG 0.138584 tig0023857:+73672 Msa1411980:three_prime_UTR
TCCCCATTTCTTGTCATCTT+TGG 0.156157 tig0023857:-69939 None:intergenic
AATAAATTTCAAGACTTTCT+AGG 0.173388 tig0023857:+72862 Msa1411980:three_prime_UTR
TTTCCCAGGCCTGCTGGGCC+TGG 0.179598 tig0023857:+70868 Msa1411980:CDS
AGAAGGTAATTATCTGATTT+TGG 0.196276 tig0023857:-68474 None:intergenic
TCCTGCTGGTGCTGCCAATT+TGG 0.200071 tig0023857:-70648 None:intergenic
AGATTCTGGTGAGGTTAATT+TGG 0.215442 tig0023857:+69269 Msa1411980:CDS
TCAATTAATTCACTTGATTC+TGG 0.221617 tig0023857:+71099 Msa1411980:CDS
CCTTTCAATTTCTTCAATTA+GGG 0.226988 tig0023857:+68612 Msa1411980:five_prime_UTR
TCCTTTCAATTTCTTCAATT+AGG 0.230665 tig0023857:+68611 Msa1411980:five_prime_UTR
AATGGGTGCTGCTGGAAATA+TGG 0.244592 tig0023857:+71236 Msa1411980:CDS
CTGGTGCTGCAGGAGCTTTA+GGG 0.252912 tig0023857:+72151 Msa1411980:CDS
AAACCCTAGATTGGAGATTT+AGG 0.253364 tig0023857:-68562 None:intergenic
TTGGCACCGCCTGGATCTTC+TGG 0.261857 tig0023857:+70823 Msa1411980:CDS
AATGAGATAGATTGTGAAAA+TGG 0.263454 tig0023857:-68637 None:intergenic
TTCCCAGGCCTGCTGGGCCT+GGG 0.264948 tig0023857:+70869 Msa1411980:CDS
ACATGCATGATGACCGCTTT+AGG 0.265341 tig0023857:+69343 Msa1411980:CDS
CTTCCCCACCAATGCACCTT+TGG 0.265416 tig0023857:-71154 None:intergenic
AGATATTCGGAGATGAATTT+TGG 0.283446 tig0023857:+72651 Msa1411980:CDS
GGTTAATTTGGAGGAGAAAA+AGG 0.297971 tig0023857:+69281 Msa1411980:CDS
TCTCCCAGGCCCAGCAGGCC+TGG 0.299414 tig0023857:-70872 None:intergenic
GGTAAGAAGGTGGGGAAGTT+TGG 0.301540 tig0023857:-71276 None:intergenic
GTTATGCAGGCCTTACTCTT+AGG 0.302721 tig0023857:+72797 Msa1411980:intron
CCAGTCTTGGCTGGTGCTGC+AGG 0.308531 tig0023857:+72141 Msa1411980:CDS
AAATTTAGAGGAGACCTTCT+AGG 0.309627 tig0023857:+70100 Msa1411980:intron
AGCGATCTTTGCGTCTCTTC+AGG 0.315255 tig0023857:-68928 None:intergenic
GGAAAACCCTCATCCATAAC+TGG 0.318201 tig0023857:-70679 None:intergenic
TGCTAATCCTCAGCTTGGTT+TGG 0.321347 tig0023857:+71990 Msa1411980:CDS
CATGCATGATGACCGCTTTA+GGG 0.321585 tig0023857:+69344 Msa1411980:CDS
TTGGATGCAGTCATGCAATT+TGG 0.329391 tig0023857:+71907 Msa1411980:intron
GCCTATGAACAATGTTCATT+TGG 0.337723 tig0023857:+70804 Msa1411980:CDS
AAAGGTGAAGGTGGGGTTGA+TGG 0.341140 tig0023857:+69189 Msa1411980:CDS
AGGCCTGCTGGGCCTGGGAG+AGG 0.346448 tig0023857:+70874 Msa1411980:CDS
TCAAGAAACTTTGCATAAAA+GGG 0.348530 tig0023857:+68694 Msa1411980:five_prime_UTR
CACTCCTAAATCTCCAATCT+AGG 0.350586 tig0023857:+68558 Msa1411980:five_prime_UTR
GCTAATCCTCAGCTTGGTTT+GGG 0.356032 tig0023857:+71991 Msa1411980:CDS
GGAAGGGATTGAGCGGGGAT+TGG 0.356597 tig0023857:-68591 None:intergenic
AATAGAGAGGATTACGTAGA+AGG 0.360941 tig0023857:-68491 None:intergenic
AGTTGAAGAAGAAGTTTATG+AGG 0.363132 tig0023857:+69164 Msa1411980:CDS
GCTCCCCAGGGTCCTGGAAG+GGG 0.366185 tig0023857:+71186 Msa1411980:CDS
CTCCCAGGCCCAGCAGGCCT+GGG 0.366979 tig0023857:-70871 None:intergenic
TGGTTCTGTGATTGTGGTTA+AGG 0.368642 tig0023857:+69209 Msa1411980:CDS
GAAGAGCCCGAGGGGTAAAA+TGG 0.369185 tig0023857:-70589 None:intergenic
CCTCAGCAATTGATAATTCA+AGG 0.369818 tig0023857:+72235 Msa1411980:CDS
AGAGTGAAGATCTTCGTGTT+AGG 0.371660 tig0023857:+69034 Msa1411980:CDS
TGGTGGTGTGGTACCCTCTT+TGG 0.371982 tig0023857:+69239 Msa1411980:CDS
GAAGGGAAATGGTGCTCCCC+AGG 0.372847 tig0023857:+71173 Msa1411980:CDS
TTGATATTCCTACTAATAGT+TGG 0.373012 tig0023857:+73590 Msa1411980:three_prime_UTR
TTATGGTGGGGCACAGGTAA+TGG 0.376092 tig0023857:+71218 Msa1411980:CDS
ATTCAGTTAATTTGGATGAA+TGG 0.377479 tig0023857:+73680 Msa1411980:three_prime_UTR
AGGAAATTTCAGTGCAAGAT+AGG 0.381935 tig0023857:+69975 Msa1411980:CDS
ACAGATGTGGCCTCAGAATC+AGG 0.383483 tig0023857:+71126 Msa1411980:CDS
TAAACAAAAGGTCCCCTTCC+AGG 0.390813 tig0023857:-71198 None:intergenic
GGCCCAGCAGGCCTGGGAAA+AGG 0.391455 tig0023857:-70865 None:intergenic
GAAGGGATTGAGCGGGGATT+GGG 0.392390 tig0023857:-68590 None:intergenic
GAAGAAGAGGAAAGAGGGGC+AGG 0.394336 tig0023857:+68988 Msa1411980:CDS
AGGCCAGCATCCTGGTGGTA+TGG 0.395524 tig0023857:+71930 Msa1411980:CDS
CCATTTGCTGTGCCCACTGC+TGG 0.395842 tig0023857:+69312 Msa1411980:CDS
TATGGTGGGGCACAGGTAAT+GGG 0.396131 tig0023857:+71219 Msa1411980:CDS
AAAACAATACCCAACAATAA+AGG 0.396490 tig0023857:-73545 None:intergenic
GCGGTCATCATGCATGTAAA+AGG 0.402067 tig0023857:-69337 None:intergenic
TTTCTTGAATCGATTGAAGT+TGG 0.403091 tig0023857:-68679 None:intergenic
GCCAAATGAACATTGTTCAT+AGG 0.404842 tig0023857:-70805 None:intergenic
CTTCCTTTCACAACAACCTT+AGG 0.405006 tig0023857:-70270 None:intergenic
AGTCCAAAGATGACAAGAAA+TGG 0.406183 tig0023857:+69936 Msa1411980:CDS
TCTTTGGAAGAAGAAGATTC+TGG 0.408273 tig0023857:+69255 Msa1411980:CDS
GGTTGGTAATTCATCTGTAA+TGG 0.408994 tig0023857:-70907 None:intergenic
CGGTGCTTACAGTCGTCAAC+CGG 0.413767 tig0023857:+72206 Msa1411980:CDS
GGCCAGCATCCTGGTGGTAT+GGG 0.414205 tig0023857:+71931 Msa1411980:CDS
CAGGAATATTCACCCAGTTA+TGG 0.417573 tig0023857:+70666 Msa1411980:CDS
ATATGAGGAAGAAGAGTATG+AGG 0.421479 tig0023857:+69137 Msa1411980:CDS
GAGGACATGTTCGAGGAAAC+AGG 0.423250 tig0023857:+70166 Msa1411980:CDS
ACAAAACAATACAATTCATC+GGG 0.424815 tig0023857:+70708 Msa1411980:CDS
GCACAGGTAATGGGTGCTGC+TGG 0.425938 tig0023857:+71228 Msa1411980:CDS
TGTCTTCAAAGACTGTTGTT+TGG 0.428990 tig0023857:+73731 Msa1411980:three_prime_UTR
AACTTCCCCACCTTCTTACC+AGG 0.429647 tig0023857:+71279 Msa1411980:CDS
TGCTCCCCAGGGTCCTGGAA+GGG 0.431029 tig0023857:+71185 Msa1411980:CDS
GTTGGTAATTCATCTGTAAT+GGG 0.432266 tig0023857:-70906 None:intergenic
GAGTGAAGATCTTCGTGTTA+GGG 0.433121 tig0023857:+69035 Msa1411980:CDS
TGAGGAAGAAGAAGAATATG+AGG 0.435642 tig0023857:+69122 Msa1411980:CDS
AGAATTCGTGGCACTGGTCG+TGG 0.437304 tig0023857:+70144 Msa1411980:CDS
GCTGTTGGCATGGCATTCCC+TGG 0.440100 tig0023857:+71961 Msa1411980:CDS
AGCTGGACCATTCCTTCTGT+TGG 0.440260 tig0023857:-70316 None:intergenic
AATGTTCATTTGGCACCGCC+TGG 0.441008 tig0023857:+70814 Msa1411980:CDS
GCACCTCTCCCAGGCCCAGC+AGG 0.441811 tig0023857:-70877 None:intergenic
AATGGTGCTCCCCAGGGTCC+TGG 0.443639 tig0023857:+71180 Msa1411980:CDS
TTCATAGGCTTTCCAACAGA+TGG 0.444016 tig0023857:-70790 None:intergenic
ATGAAGAAGAAGAGGAAAGA+GGG 0.445157 tig0023857:+68983 Msa1411980:CDS
TCACCATACCTTGCTGTTGA+CGG 0.450569 tig0023857:+72186 Msa1411980:CDS
TGAAGGTAGCAATCAAAATC+AGG 0.451354 tig0023857:+70245 Msa1411980:CDS
TGAGGATTAGCAACATATCC+AGG 0.451553 tig0023857:-71979 None:intergenic
CGAGGGCGTGGTAGAATTCG+TGG 0.452057 tig0023857:+70132 Msa1411980:CDS
ACTTGAGTATGTGAGGGAAC+AGG 0.452754 tig0023857:-70928 None:intergenic
ATGCTATCTATGCAGATATT+CGG 0.452916 tig0023857:+72638 Msa1411980:CDS
CTGAAGTTATTGCAGTTTGA+CGG 0.455727 tig0023857:+73054 Msa1411980:three_prime_UTR
CCAGCAGTGGGCACAGCAAA+TGG 0.458085 tig0023857:-69312 None:intergenic
GTCCAAAGATGACAAGAAAT+GGG 0.459003 tig0023857:+69937 Msa1411980:CDS
ATGGGTGCTGCTGGAAATAT+GGG 0.460860 tig0023857:+71237 Msa1411980:CDS
CAAATCATTTCAATTAATGT+TGG 0.467650 tig0023857:+72613 Msa1411980:CDS
CAAATCAACCAACTATTAGT+AGG 0.468277 tig0023857:-73598 None:intergenic
TTCTGGTGAGGTTAATTTGG+AGG 0.468724 tig0023857:+69272 Msa1411980:CDS
TCCAAATTGGCAGCACCAGC+AGG 0.470042 tig0023857:+70647 Msa1411980:CDS
GAACAAAGGGCCTAAGAGTA+AGG 0.472384 tig0023857:-72807 None:intergenic
CTTCAAAGACTGTTGTTTGG+CGG 0.472436 tig0023857:+73734 Msa1411980:three_prime_UTR
GGACCATTCCTTCTGTTGGT+AGG 0.474490 tig0023857:-70312 None:intergenic
GCATTGGTGGGGAAGGGAAA+TGG 0.474728 tig0023857:+71162 Msa1411980:CDS
GCAAGCTACTGCCCCACAGA+TGG 0.475181 tig0023857:+71023 Msa1411980:CDS
ATGAGGAGAAAGGTGAAGGT+GGG 0.475188 tig0023857:+69181 Msa1411980:CDS
GGTTGATGGTTCTGTGATTG+TGG 0.476840 tig0023857:+69203 Msa1411980:CDS
CCTGCAGCACCAGCCAAGAC+TGG 0.478058 tig0023857:-72141 None:intergenic
AACAAAACAATACAATTCAT+CGG 0.478176 tig0023857:+70707 Msa1411980:CDS
TGTATATAGGCTACCAGTCT+TGG 0.479427 tig0023857:+72128 Msa1411980:intron
AATTTAGAGGAGACCTTCTA+GGG 0.480298 tig0023857:+70101 Msa1411980:intron
CAAAGGTGCATTGGTGGGGA+AGG 0.480447 tig0023857:+71155 Msa1411980:CDS
ATCAAAAGCTGGAGAACAAA+GGG 0.484288 tig0023857:-72820 None:intergenic
GAGGAAGAAGAGTATGAGGA+GGG 0.484566 tig0023857:+69141 Msa1411980:CDS
GAAGAAGTTTATGAGGAGAA+AGG 0.484604 tig0023857:+69171 Msa1411980:CDS
TCAATTGCTGAGGTCTGTCC+CGG 0.485782 tig0023857:-72225 None:intergenic
CCTCGAAAATTACCCCTAGA+AGG 0.488132 tig0023857:-70114 None:intergenic
CGTCAAACTGCAATAACTTC+AGG 0.488829 tig0023857:-73053 None:intergenic
AAGGAATGGTCCAGCTCCCC+AGG 0.490093 tig0023857:+70323 Msa1411980:CDS
CTCCCATACCACCAGGATGC+TGG 0.490670 tig0023857:-71933 None:intergenic
TGAAGTTATTGCAGTTTGAC+GGG 0.490817 tig0023857:+73055 Msa1411980:three_prime_UTR
AAGGTCCCCTTCCAGGACCC+TGG 0.492771 tig0023857:-71191 None:intergenic
TATGTTGCTAATCCTCAGCT+TGG 0.493673 tig0023857:+71985 Msa1411980:CDS
TTGAAAGGAAGGGATTGAGC+GGG 0.494305 tig0023857:-68597 None:intergenic
CCAGGTCGATGGCCCATCTG+TGG 0.494799 tig0023857:-71036 None:intergenic
TGAGGAAGAAGAGTATGAGG+AGG 0.494933 tig0023857:+69140 Msa1411980:CDS
CCACAGATGGGCCATCGACC+TGG 0.498881 tig0023857:+71036 Msa1411980:CDS
TTTGGCTTTACCTGATTCTG+AGG 0.500332 tig0023857:-71136 None:intergenic
TATAGGCTACCAGTCTTGGC+TGG 0.501110 tig0023857:+72132 Msa1411980:intron
AGGTCCCCTTCCAGGACCCT+GGG 0.502918 tig0023857:-71190 None:intergenic
TAGTTACAAACCTGGTAAGA+AGG 0.503484 tig0023857:-71289 None:intergenic
GAGCTGGTAAATGATGAGTA+TGG 0.506145 tig0023857:+72512 Msa1411980:intron
CAGGTCGATGGCCCATCTGT+GGG 0.507031 tig0023857:-71035 None:intergenic
CAATTTGGAGGCCAGCATCC+TGG 0.508315 tig0023857:+71922 Msa1411980:CDS
TGGTGCTGCAGGAGCTTTAG+GGG 0.509692 tig0023857:+72152 Msa1411980:CDS
TCTTAGATCTAGGAAATCTC+AGG 0.512423 tig0023857:+70447 Msa1411980:intron
AAGGTTGTTGTGAAAGGAAG+AGG 0.513988 tig0023857:+70273 Msa1411980:CDS
TATGAGGAGAAAGGTGAAGG+TGG 0.514010 tig0023857:+69180 Msa1411980:CDS
TAGTGATGATGAAGAAGAAG+AGG 0.514285 tig0023857:+68975 Msa1411980:CDS
CAATCAAAATCAGGTGCCTA+AGG 0.515973 tig0023857:+70254 Msa1411980:CDS
TTGGTAGGTTCATACCTTCG+AGG 0.516217 tig0023857:-70297 None:intergenic
ATACAGCTTGTCCATGCTGA+TGG 0.517495 tig0023857:-70749 None:intergenic
TGGGATCTGAAACCCTAGAT+TGG 0.517744 tig0023857:-68571 None:intergenic
ACTCCTAAATCTCCAATCTA+GGG 0.521046 tig0023857:+68559 Msa1411980:five_prime_UTR
TGAATAGCCTGCAGTTGTGT+TGG 0.522283 tig0023857:-70964 None:intergenic
ATGGGCCATCGACCTGGTAG+TGG 0.523149 tig0023857:+71042 Msa1411980:CDS
AATTGAAGAAATTGAAAGGA+AGG 0.523409 tig0023857:-68608 None:intergenic
TGTTTGAAGTTAAAATAGAG+AGG 0.525736 tig0023857:-68504 None:intergenic
TAGTCACGAATTGTGAAAAG+AGG 0.525908 tig0023857:-68533 None:intergenic
GATGCAGTCATGCAATTTGG+AGG 0.526481 tig0023857:+71910 Msa1411980:intron
CGTGGTAGAATTCGTGGCAC+TGG 0.527371 tig0023857:+70138 Msa1411980:CDS
ATGGGGACATGATAAATTTG+AGG 0.528738 tig0023857:+69955 Msa1411980:CDS
TTCTGCATTGGATGATGGTA+TGG 0.528786 tig0023857:-70503 None:intergenic
GTGCTCCCCAGGGTCCTGGA+AGG 0.532754 tig0023857:+71184 Msa1411980:CDS
TCAGATTCTGCATTGGATGA+TGG 0.532807 tig0023857:-70508 None:intergenic
GGGAATGCCATGCCAACAGC+AGG 0.536272 tig0023857:-71958 None:intergenic
TGCATGGTGGAAGGAGATTG+TGG 0.536675 tig0023857:+69912 Msa1411980:intron
AAGCTTGTGAGAAACTAGTC+AGG 0.537115 tig0023857:+73369 Msa1411980:three_prime_UTR
GGGAGTTCCTGCTGTTGGCA+TGG 0.537333 tig0023857:+71951 Msa1411980:CDS
GTGCCTAAGGTTGTTGTGAA+AGG 0.537936 tig0023857:+70267 Msa1411980:CDS
CAGTCTGTCCGCCCATCTGT+TGG 0.538947 tig0023857:+70778 Msa1411980:CDS
CAAGAAACTTTGCATAAAAG+GGG 0.540607 tig0023857:+68695 Msa1411980:five_prime_UTR
TGTGCCCCACCATAAACAAA+AGG 0.541688 tig0023857:-71210 None:intergenic
CGGCAAACTTCATATGTTCA+CGG 0.542060 tig0023857:+73754 Msa1411980:three_prime_UTR
TATTCACCCAGTTATGGATG+AGG 0.543178 tig0023857:+70672 Msa1411980:CDS
AATAATAGAGAATATAATGA+AGG 0.543853 tig0023857:+70228 Msa1411980:CDS
GCATGGTGGAAGGAGATTGT+GGG 0.544643 tig0023857:+69913 Msa1411980:intron
TAAAGCCAAAGGTGCATTGG+TGG 0.544717 tig0023857:+71149 Msa1411980:CDS
TGAAGAAGAAGAGGAAAGAG+GGG 0.545182 tig0023857:+68984 Msa1411980:CDS
TACAAACCTGGTAAGAAGGT+GGG 0.548842 tig0023857:-71285 None:intergenic
GATGAAGAAGAAGAGGAAAG+AGG 0.549176 tig0023857:+68982 Msa1411980:CDS
TTTATTTACTTGAGTATGTG+AGG 0.550517 tig0023857:-70935 None:intergenic
TCATAGGCTTTCCAACAGAT+GGG 0.551593 tig0023857:-70789 None:intergenic
AACTGGGTGAATATTCCTGC+TGG 0.552361 tig0023857:-70662 None:intergenic
GGTATGGGAGTTCCTGCTGT+TGG 0.553743 tig0023857:+71946 Msa1411980:CDS
GTTTATGAGGAGAAAGGTGA+AGG 0.554427 tig0023857:+69177 Msa1411980:CDS
GGAAATATGGGCATCAGTCA+AGG 0.555036 tig0023857:+71249 Msa1411980:CDS
GCACCGTCAACAGCAAGGTA+TGG 0.556969 tig0023857:-72189 None:intergenic
AGTTTCTCCAACACAACTGC+AGG 0.558501 tig0023857:+70957 Msa1411980:CDS
AGCCCGAGGGGTAAAATGGA+GGG 0.559346 tig0023857:-70585 None:intergenic
AAAGGTGCATTGGTGGGGAA+GGG 0.559886 tig0023857:+71156 Msa1411980:CDS
GAATGTGGAACAGCATGAGC+AGG 0.560261 tig0023857:-73031 None:intergenic
AGGTAAAGCCAAAGGTGCAT+TGG 0.560730 tig0023857:+71146 Msa1411980:CDS
ATTGAAGAAATTGAAAGGAA+GGG 0.560990 tig0023857:-68607 None:intergenic
AAGGGAAATGGTGCTCCCCA+GGG 0.564353 tig0023857:+71174 Msa1411980:CDS
TGAGGAGAAAGGTGAAGGTG+GGG 0.564685 tig0023857:+69182 Msa1411980:CDS
AATAAACCTCGCAGGCAAGT+TGG 0.565063 tig0023857:+72545 Msa1411980:CDS
CACAGGGTCAGATTCTGCAT+TGG 0.566976 tig0023857:-70515 None:intergenic
CTGCAATAACTTCAGGAATG+TGG 0.567233 tig0023857:-73046 None:intergenic
TGAAGATGATGAGGAAATTG+AGG 0.568096 tig0023857:+69104 Msa1411980:CDS
AGAATCTTCTTCTTCCAAAG+AGG 0.568259 tig0023857:-69253 None:intergenic
CAAGCTACTGCCCCACAGAT+GGG 0.568630 tig0023857:+71024 Msa1411980:CDS
ATTCACCCAGTTATGGATGA+GGG 0.569904 tig0023857:+70673 Msa1411980:CDS
TGATATGGCTAATTCTGTTG+CGG 0.572619 tig0023857:+68879 Msa1411980:exon
ACATGGACACCAGAAGATCC+AGG 0.575140 tig0023857:-70832 None:intergenic
TGCAAGCCAACTTGCCTGCG+AGG 0.575451 tig0023857:-72551 None:intergenic
ATTCAGAGAAGTTCTGCACC+AGG 0.576778 tig0023857:+70982 Msa1411980:CDS
TCTTACAATGCGGAGACGTG+AGG 0.577025 tig0023857:+68951 Msa1411980:CDS
AAAGCCAAAGGTGCATTGGT+GGG 0.577877 tig0023857:+71150 Msa1411980:CDS
GAATCTTCTTCTTCCAAAGA+GGG 0.578294 tig0023857:-69252 None:intergenic
GAGCCCGAGGGGTAAAATGG+AGG 0.578382 tig0023857:-70586 None:intergenic
AAGTGCTCCAGATCAAAAGC+TGG 0.579144 tig0023857:-72831 None:intergenic
GGGATCGGTGCACCTCTCCC+AGG 0.579608 tig0023857:-70886 None:intergenic
CCCTAATTGAAGAAATTGAA+AGG 0.580436 tig0023857:-68612 None:intergenic
GAAGATTGAGATCCACTACC+AGG 0.582276 tig0023857:-71054 None:intergenic
CCTTGAATTATCAATTGCTG+AGG 0.582948 tig0023857:-72235 None:intergenic
GCAAGATAGGCGCTATGATG+AGG 0.586479 tig0023857:+69988 Msa1411980:CDS
GAACCTACCAACAGAAGGAA+TGG 0.588056 tig0023857:+70309 Msa1411980:CDS
GATCAAAAGCTGGAGAACAA+AGG 0.591172 tig0023857:-72821 None:intergenic
TGTTGTTGATTCCATCAGCA+TGG 0.593595 tig0023857:+70738 Msa1411980:CDS
TGAAAGGAAGGGATTGAGCG+GGG 0.595019 tig0023857:-68596 None:intergenic
TGAAAGGAAGAGGGCCTCGA+AGG 0.597013 tig0023857:+70283 Msa1411980:CDS
GGTCGTGGAGGACATGTTCG+AGG 0.600116 tig0023857:+70159 Msa1411980:CDS
TTATTTACTTGAGTATGTGA+GGG 0.601489 tig0023857:-70934 None:intergenic
TAATTCATCTGTAATGGGAT+CGG 0.602971 tig0023857:-70901 None:intergenic
ACAAACCTGGTAAGAAGGTG+GGG 0.604756 tig0023857:-71284 None:intergenic
TAGTTGCTTGTTTAATTGTG+CGG 0.607173 tig0023857:+73081 Msa1411980:three_prime_UTR
ACAGACGTTAAAGTCTGCCC+TGG 0.607646 tig0023857:-71000 None:intergenic
GAGATCCACTACCAGGTCGA+TGG 0.608351 tig0023857:-71047 None:intergenic
GCCCGAGGGGTAAAATGGAG+GGG 0.608422 tig0023857:-70584 None:intergenic
AGTAGGAATATCAAGAAGCA+CGG 0.609070 tig0023857:-73581 None:intergenic
CATGTAAAAGGCACCAGCAG+TGG 0.613039 tig0023857:-69325 None:intergenic
TGAAGCAGCTGATTGCATCA+TGG 0.614596 tig0023857:+73438 Msa1411980:three_prime_UTR
ATTGAAAGGAAGGGATTGAG+CGG 0.614782 tig0023857:-68598 None:intergenic
ATGTAAAAGGCACCAGCAGT+GGG 0.616487 tig0023857:-69324 None:intergenic
GTTCGTTCTGATGATTCAGA+AGG 0.616861 tig0023857:+69057 Msa1411980:CDS
AAAATAACTACATGGAACAA+AGG 0.618150 tig0023857:-73491 None:intergenic
TTCTTTGTTAGAAGAGCCCG+AGG 0.620299 tig0023857:-70599 None:intergenic
ACAATTCTAATGCCCGCCAA+AGG 0.620322 tig0023857:+69367 Msa1411980:CDS
AACGACAGAATAAACCTCGC+AGG 0.625383 tig0023857:+72537 Msa1411980:CDS
GGTATGAACCTACCAACAGA+AGG 0.632725 tig0023857:+70304 Msa1411980:CDS
GGTGCTTACAGTCGTCAACC+GGG 0.633350 tig0023857:+72207 Msa1411980:CDS
GGAAGAAGAAGATTCTGGTG+AGG 0.633912 tig0023857:+69260 Msa1411980:CDS
AGGTCGATGGCCCATCTGTG+GGG 0.635661 tig0023857:-71034 None:intergenic
TCAGAATCAGGTAAAGCCAA+AGG 0.638352 tig0023857:+71138 Msa1411980:CDS
GAAAACCCTCATCCATAACT+GGG 0.641507 tig0023857:-70678 None:intergenic
TCTGATGATTCAGAAGGTGA+AGG 0.642032 tig0023857:+69063 Msa1411980:CDS
GAGGATTAGCAACATATCCA+GGG 0.645143 tig0023857:-71978 None:intergenic
AAGCCAAAGGTGCATTGGTG+GGG 0.647056 tig0023857:+71151 Msa1411980:CDS
GAAAAGGAGATTGAGAAACA+TGG 0.648323 tig0023857:-70849 None:intergenic
TTACAAACCTGGTAAGAAGG+TGG 0.648396 tig0023857:-71286 None:intergenic
TAGGCTTTCCAACAGATGGG+CGG 0.654630 tig0023857:-70786 None:intergenic
AGGTTGTTGTGAAAGGAAGA+GGG 0.655613 tig0023857:+70274 Msa1411980:CDS
CATTAGAATTGTCCCTAAAG+CGG 0.656229 tig0023857:-69356 None:intergenic
TGGGAAAATCAGAAATGACA+TGG 0.656948 tig0023857:+72010 Msa1411980:CDS
TGTAAGCACCGTCAACAGCA+AGG 0.657890 tig0023857:-72194 None:intergenic
TGATTCTGGAGAAACAGATG+TGG 0.659001 tig0023857:+71113 Msa1411980:CDS
GCAGGAACTCCCATACCACC+AGG 0.661642 tig0023857:-71940 None:intergenic
GTGGTTAAGGAATCTGATGG+TGG 0.666005 tig0023857:+69222 Msa1411980:CDS
TAAGGAATCTGATGGTGGTG+TGG 0.667047 tig0023857:+69227 Msa1411980:CDS
TGATTATGATGAAGATGATG+AGG 0.669501 tig0023857:+69095 Msa1411980:CDS
GGTCCCCTTCCAGGACCCTG+GGG 0.675246 tig0023857:-71189 None:intergenic
ATTCGTGGCACTGGTCGTGG+AGG 0.678406 tig0023857:+70147 Msa1411980:CDS
TTCAGAGAAGTTCTGCACCA+GGG 0.679725 tig0023857:+70983 Msa1411980:CDS
TCCAAAGATGACAAGAAATG+GGG 0.681978 tig0023857:+69938 Msa1411980:CDS
CTTTGTTAGAAGAGCCCGAG+GGG 0.684062 tig0023857:-70597 None:intergenic
TGAGAAATATGCAATCATGA+CGG 0.686101 tig0023857:-72592 None:intergenic
AGTTATTGCAGTTTGACGGG+TGG 0.690946 tig0023857:+73058 Msa1411980:three_prime_UTR
TTTGGAGGCCAGCATCCTGG+TGG 0.702152 tig0023857:+71925 Msa1411980:CDS
GATGATTCAGAAGGTGAAGG+TGG 0.703579 tig0023857:+69066 Msa1411980:CDS
TCTTTGTTAGAAGAGCCCGA+GGG 0.712689 tig0023857:-70598 None:intergenic
GAGTATGTGAGGGAACAGGT+TGG 0.720166 tig0023857:-70924 None:intergenic
ATTGTGGTTAAGGAATCTGA+TGG 0.721815 tig0023857:+69219 Msa1411980:CDS
AAAGATCGCTTCTTACAATG+CGG 0.731740 tig0023857:+68941 Msa1411980:CDS
CAAAACAATACAATTCATCG+GGG 0.743574 tig0023857:+70709 Msa1411980:CDS
ATTTAGAGGAGACCTTCTAG+GGG 0.744328 tig0023857:+70102 Msa1411980:intron
TGGACACCAGAAGATCCAGG+CGG 0.814508 tig0023857:-70829 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATACAAGAAATATATT+TGG - tig0023857:69419-69438 None:intergenic 10.0%
!!! TGATTTTTCTATTTTTAATT+TGG + tig0023857:71884-71903 Msa1411980:intron 10.0%
!!! TTTGAATTTTTATCGTTTTA+CGG + tig0023857:68761-68780 Msa1411980:five_prime_UTR 15.0%
!! AATAATAGAGAATATAATGA+AGG + tig0023857:70228-70247 Msa1411980:CDS 15.0%
!! ATTGTATACCTATATTATTA+GGG + tig0023857:71547-71566 Msa1411980:intron 15.0%
!! ATTATTAATAGCATTTATGT+TGG + tig0023857:71602-71621 Msa1411980:intron 15.0%
!! ATTTATATTAATATCGTCTT+GGG + tig0023857:71834-71853 Msa1411980:intron 15.0%
!!! TTTTCTATTTTTAATTTGGT+TGG + tig0023857:71888-71907 Msa1411980:intron 15.0%
!! AAGAATAATTATGAAAATAG+AGG + tig0023857:73105-73124 Msa1411980:intron 15.0%
!! TGGAAAAAAAAAATGTTAAA+TGG - tig0023857:73137-73156 None:intergenic 15.0%
!! TTACATGAGAAAAATTTAAA+TGG + tig0023857:73641-73660 Msa1411980:three_prime_UTR 15.0%
!!! TGTTTTGTATGTATGTATTA+CGG + tig0023857:69497-69516 Msa1411980:intron 20.0%
!! AACAAAACAATACAATTCAT+CGG + tig0023857:70707-70726 Msa1411980:CDS 20.0%
!! TAACTAAATTGCAAAAGTTA+AGG + tig0023857:71306-71325 Msa1411980:intron 20.0%
!! GATTGTATACCTATATTATT+AGG + tig0023857:71546-71565 Msa1411980:intron 20.0%
!! GTAAATAACCCTAATAATAT+AGG - tig0023857:71558-71577 None:intergenic 20.0%
!! GATTTATATTAATATCGTCT+TGG + tig0023857:71833-71852 Msa1411980:intron 20.0%
!!! TTTGAAGTGATGAAAATTTA+AGG - tig0023857:72090-72109 None:intergenic 20.0%
!! CATATTTAATACTATAAGAC+TGG - tig0023857:72266-72285 None:intergenic 20.0%
!!! TATATTTTACCAGTTTTTTG+CGG - tig0023857:72419-72438 None:intergenic 20.0%
!! CAAATCATTTCAATTAATGT+TGG + tig0023857:72613-72632 Msa1411980:CDS 20.0%
!!! TATTTGAAATAAGCAGATAA+AGG + tig0023857:72702-72721 Msa1411980:intron 20.0%
!! AATAAATTTCAAGACTTTCT+AGG + tig0023857:72862-72881 Msa1411980:three_prime_UTR 20.0%
!!! ATTGCAACATTTTTGTAAAA+AGG - tig0023857:72934-72953 None:intergenic 20.0%
!! TTTATTGAATTTCAACCAAT+AGG - tig0023857:73169-73188 None:intergenic 20.0%
!! TGAAATAACACAATTTATTG+TGG + tig0023857:73307-73326 Msa1411980:intron 20.0%
!!! ACAAAATTTTCTCATGTAAA+TGG + tig0023857:73465-73484 Msa1411980:three_prime_UTR 20.0%
!! TTCAGATAAAAATAACTACA+TGG - tig0023857:73502-73521 None:intergenic 20.0%
!!! AAAATTTTCACCTTTATTGT+TGG + tig0023857:73535-73554 Msa1411980:three_prime_UTR 20.0%
!!! AAATTTTCACCTTTATTGTT+GGG + tig0023857:73536-73555 Msa1411980:three_prime_UTR 20.0%
!!! GTAATTATCTGATTTTGGAA+GGG - tig0023857:68472-68491 None:intergenic 25.0%
!! AGAAGGTAATTATCTGATTT+TGG - tig0023857:68477-68496 None:intergenic 25.0%
!! TGTTTGAAGTTAAAATAGAG+AGG - tig0023857:68507-68526 None:intergenic 25.0%
! ATTGAAGAAATTGAAAGGAA+GGG - tig0023857:68610-68629 None:intergenic 25.0%
! AATTGAAGAAATTGAAAGGA+AGG - tig0023857:68611-68630 None:intergenic 25.0%
! TCCTTTCAATTTCTTCAATT+AGG + tig0023857:68611-68630 Msa1411980:five_prime_UTR 25.0%
! CCTTTCAATTTCTTCAATTA+GGG + tig0023857:68612-68631 Msa1411980:five_prime_UTR 25.0%
! AATGAGATAGATTGTGAAAA+TGG - tig0023857:68640-68659 None:intergenic 25.0%
! TTCAAGAAACTTTGCATAAA+AGG + tig0023857:68693-68712 Msa1411980:five_prime_UTR 25.0%
! TCAAGAAACTTTGCATAAAA+GGG + tig0023857:68694-68713 Msa1411980:five_prime_UTR 25.0%
!!! ATTCGTGGATTAATTTTTTG+TGG + tig0023857:68798-68817 Msa1411980:five_prime_UTR 25.0%
!!! TTCGTGGATTAATTTTTTGT+GGG + tig0023857:68799-68818 Msa1411980:five_prime_UTR 25.0%
!!! TTTTTGGTTCTTGAATTTCT+AGG + tig0023857:68840-68859 Msa1411980:five_prime_UTR 25.0%
!!! TTGAATTTCTAGGTTTTTTC+TGG + tig0023857:68850-68869 Msa1411980:five_prime_UTR 25.0%
!!! TGAATTTCTAGGTTTTTTCT+GGG + tig0023857:68851-68870 Msa1411980:five_prime_UTR 25.0%
!! TATTTAGTGTTAGTTTGACT+TGG + tig0023857:69434-69453 Msa1411980:intron 25.0%
!!! TTGTAGCTTAGTTTTAGATT+TGG + tig0023857:69461-69480 Msa1411980:intron 25.0%
! ACACTAAACATACATATACA+AGG - tig0023857:69652-69671 None:intergenic 25.0%
! AAACTAAACTACAATATTCC+AGG - tig0023857:69683-69702 None:intergenic 25.0%
!!! TTTTTTGTTCTCTTAGATCT+AGG + tig0023857:70437-70456 Msa1411980:intron 25.0%
! AAATTAATCTGCCACAAAAA+CGG + tig0023857:70620-70639 Msa1411980:CDS 25.0%
!!! ATTGTATTGTTTTGTTGAAC+CGG - tig0023857:70703-70722 None:intergenic 25.0%
! ACAAAACAATACAATTCATC+GGG + tig0023857:70708-70727 Msa1411980:CDS 25.0%
! TTATTTACTTGAGTATGTGA+GGG - tig0023857:70937-70956 None:intergenic 25.0%
! TTTATTTACTTGAGTATGTG+AGG - tig0023857:70938-70957 None:intergenic 25.0%
!! TTAATTGATGCAGATCTTTT+TGG - tig0023857:71087-71106 None:intergenic 25.0%
! TCAATTAATTCACTTGATTC+TGG + tig0023857:71099-71118 Msa1411980:CDS 25.0%
!! TGCAAAAGTTAAGGAAATTT+TGG + tig0023857:71315-71334 Msa1411980:intron 25.0%
!! TAATATTACATGATTTTCGC+AGG - tig0023857:71430-71449 None:intergenic 25.0%
! AAGTGAGAATGTTAGTATTA+GGG + tig0023857:71500-71519 Msa1411980:intron 25.0%
! TATAATCTTCCATAATGCAT+TGG - tig0023857:71642-71661 None:intergenic 25.0%
!! CTTTGAAAGAAAGAAAATTC+AGG - tig0023857:71735-71754 None:intergenic 25.0%
!! TTTTCTTTCTTTCAAAGTAC+AGG + tig0023857:71738-71757 Msa1411980:intron 25.0%
! TAATATAAATCAGAACCGTA+GGG - tig0023857:71824-71843 None:intergenic 25.0%
! TTAATATAAATCAGAACCGT+AGG - tig0023857:71825-71844 None:intergenic 25.0%
!! TTGTTGCATTTTCTGATATT+TGG + tig0023857:72767-72786 Msa1411980:intron 25.0%
!!! ATTTGGTAATTTTGTTATGC+AGG + tig0023857:72784-72803 Msa1411980:intron 25.0%
!! AATAAAGTCTTTATTTCGAG+TGG + tig0023857:73183-73202 Msa1411980:intron 25.0%
!! ATAAAGTCTTTATTTCGAGT+GGG + tig0023857:73184-73203 Msa1411980:intron 25.0%
! TTCAAAAGATCAATCCATTA+GGG - tig0023857:73291-73310 None:intergenic 25.0%
! TTTCAAAAGATCAATCCATT+AGG - tig0023857:73292-73311 None:intergenic 25.0%
!! AATTTATTGTGGTTCTTTTC+AGG + tig0023857:73318-73337 Msa1411980:intron 25.0%
! AAAATAACTACATGGAACAA+AGG - tig0023857:73494-73513 None:intergenic 25.0%
! AAAACAATACCCAACAATAA+AGG - tig0023857:73548-73567 None:intergenic 25.0%
! TTGATATTCCTACTAATAGT+TGG + tig0023857:73590-73609 Msa1411980:three_prime_UTR 25.0%
! CTTCTTGAATTCAGTTAATT+TGG + tig0023857:73672-73691 Msa1411980:three_prime_UTR 25.0%
!! ATTCAGTTAATTTGGATGAA+TGG + tig0023857:73680-73699 Msa1411980:three_prime_UTR 25.0%
!! TGATTTTGGAAGGGTAATTT+CGG - tig0023857:68463-68482 None:intergenic 30.0%
! GGTAATTATCTGATTTTGGA+AGG - tig0023857:68473-68492 None:intergenic 30.0%
CCCTAATTGAAGAAATTGAA+AGG - tig0023857:68615-68634 None:intergenic 30.0%
TTTCTTGAATCGATTGAAGT+TGG - tig0023857:68682-68701 None:intergenic 30.0%
CAAGAAACTTTGCATAAAAG+GGG + tig0023857:68695-68714 Msa1411980:five_prime_UTR 30.0%
! TTTTTATCGTTTTACGGTTC+TGG + tig0023857:68767-68786 Msa1411980:five_prime_UTR 30.0%
! TTTTATCGTTTTACGGTTCT+GGG + tig0023857:68768-68787 Msa1411980:five_prime_UTR 30.0%
!!! TCGTGGATTAATTTTTTGTG+GGG + tig0023857:68800-68819 Msa1411980:five_prime_UTR 30.0%
!!! TCTTGTTTTTTGGGGTTTTT+TGG + tig0023857:68824-68843 Msa1411980:five_prime_UTR 30.0%
!!! GAATTTCTAGGTTTTTTCTG+GGG + tig0023857:68852-68871 Msa1411980:five_prime_UTR 30.0%
!!! TTTTTCTGGGGTTTTTGATA+TGG + tig0023857:68864-68883 Msa1411980:exon 30.0%
TGATTATGATGAAGATGATG+AGG + tig0023857:69095-69114 Msa1411980:CDS 30.0%
AGTTGAAGAAGAAGTTTATG+AGG + tig0023857:69164-69183 Msa1411980:CDS 30.0%
CATGATGAAAAAGATACCTT+TGG - tig0023857:69386-69405 None:intergenic 30.0%
CATTGACACTAATAATTGGA+TGG - tig0023857:69808-69827 None:intergenic 30.0%
!! TTTTAACTCCGACTTTTCAA+AGG + tig0023857:69885-69904 Msa1411980:intron 30.0%
GTTGTGTGTATGAAATTTAG+AGG + tig0023857:70088-70107 Msa1411980:intron 30.0%
!!! TTACTGTTTATTTTGCACCT+GGG - tig0023857:70343-70362 None:intergenic 30.0%
AATTAATCTGCCACAAAAAC+GGG + tig0023857:70621-70640 Msa1411980:CDS 30.0%
CAAAACAATACAATTCATCG+GGG + tig0023857:70709-70728 Msa1411980:CDS 30.0%
! TAATTCATCTGTAATGGGAT+CGG - tig0023857:70904-70923 None:intergenic 30.0%
!! GTTGGTAATTCATCTGTAAT+GGG - tig0023857:70909-70928 None:intergenic 30.0%
TTGCAATTTAGTTACAAACC+TGG - tig0023857:71300-71319 None:intergenic 30.0%
GAAGTGAGAATGTTAGTATT+AGG + tig0023857:71499-71518 Msa1411980:intron 30.0%
AGGTATACAATCTTAGAGTT+TGG - tig0023857:71538-71557 None:intergenic 30.0%
!!! ATTTTAACTTAACGAAGACG+TGG + tig0023857:71661-71680 Msa1411980:intron 30.0%
! AAGACGTGGATAATAGTTTT+TGG + tig0023857:71675-71694 Msa1411980:intron 30.0%
! AGACGTGGATAATAGTTTTT+GGG + tig0023857:71676-71695 Msa1411980:intron 30.0%
!!! TGGATAATAGTTTTTGGGTT+TGG + tig0023857:71681-71700 Msa1411980:intron 30.0%
TTGGGTTTGGATAATATACT+TGG + tig0023857:71694-71713 Msa1411980:intron 30.0%
TGGGTTTGGATAATATACTT+GGG + tig0023857:71695-71714 Msa1411980:intron 30.0%
AAAATCAATTGCAAGCGTAA+AGG - tig0023857:71871-71890 None:intergenic 30.0%
TAATTACCTCGTCTGTATAT+AGG + tig0023857:72115-72134 Msa1411980:intron 30.0%
CAAAAGGTGAAACTATCAAA+GGG - tig0023857:72449-72468 None:intergenic 30.0%
TCAAAAGGTGAAACTATCAA+AGG - tig0023857:72450-72469 None:intergenic 30.0%
!!! ATAGTTTCACCTTTTGACTT+TGG + tig0023857:72453-72472 Msa1411980:intron 30.0%
TGAGAAATATGCAATCATGA+CGG - tig0023857:72595-72614 None:intergenic 30.0%
ATGCTATCTATGCAGATATT+CGG + tig0023857:72638-72657 Msa1411980:CDS 30.0%
! AGATATTCGGAGATGAATTT+TGG + tig0023857:72651-72670 Msa1411980:CDS 30.0%
CATAGAACTAGTTGTTAGTT+TGG - tig0023857:72738-72757 None:intergenic 30.0%
! AATGTTGCAATGATTTTGCT+TGG + tig0023857:72943-72962 Msa1411980:intron 30.0%
TAGTTGCTTGTTTAATTGTG+CGG + tig0023857:73081-73100 Msa1411980:three_prime_UTR 30.0%
TTGAATTTCAACCAATAGGA+GGG - tig0023857:73165-73184 None:intergenic 30.0%
ATTGAATTTCAACCAATAGG+AGG - tig0023857:73166-73185 None:intergenic 30.0%
! TTTACCGGTTGAAATTCATA+TGG - tig0023857:73212-73231 None:intergenic 30.0%
! ATATCTGTTACTTACCCTAA+TGG + tig0023857:73274-73293 Msa1411980:intron 30.0%
CAAATCAACCAACTATTAGT+AGG - tig0023857:73601-73620 None:intergenic 30.0%
AATAGAGAGGATTACGTAGA+AGG - tig0023857:68494-68513 None:intergenic 35.0%
TAGTCACGAATTGTGAAAAG+AGG - tig0023857:68536-68555 None:intergenic 35.0%
ACTCCTAAATCTCCAATCTA+GGG + tig0023857:68559-68578 Msa1411980:five_prime_UTR 35.0%
AAACCCTAGATTGGAGATTT+AGG - tig0023857:68565-68584 None:intergenic 35.0%
!!! TTTGTGGGGTTCTTGTTTTT+TGG + tig0023857:68814-68833 Msa1411980:five_prime_UTR 35.0%
!!! TTGTGGGGTTCTTGTTTTTT+GGG + tig0023857:68815-68834 Msa1411980:five_prime_UTR 35.0%
TGATATGGCTAATTCTGTTG+CGG + tig0023857:68879-68898 Msa1411980:exon 35.0%
AAAGATCGCTTCTTACAATG+CGG + tig0023857:68941-68960 Msa1411980:CDS 35.0%
! TAGTGATGATGAAGAAGAAG+AGG + tig0023857:68975-68994 Msa1411980:CDS 35.0%
ATGAAGAAGAAGAGGAAAGA+GGG + tig0023857:68983-69002 Msa1411980:CDS 35.0%
TGAAGATGATGAGGAAATTG+AGG + tig0023857:69104-69123 Msa1411980:CDS 35.0%
TGAGGAAGAAGAAGAATATG+AGG + tig0023857:69122-69141 Msa1411980:CDS 35.0%
! ATATGAGGAAGAAGAGTATG+AGG + tig0023857:69137-69156 Msa1411980:CDS 35.0%
GAAGAAGTTTATGAGGAGAA+AGG + tig0023857:69171-69190 Msa1411980:CDS 35.0%
ATTGTGGTTAAGGAATCTGA+TGG + tig0023857:69219-69238 Msa1411980:CDS 35.0%
GAATCTTCTTCTTCCAAAGA+GGG - tig0023857:69255-69274 None:intergenic 35.0%
AGAATCTTCTTCTTCCAAAG+AGG - tig0023857:69256-69275 None:intergenic 35.0%
! TCTTTGGAAGAAGAAGATTC+TGG + tig0023857:69255-69274 Msa1411980:CDS 35.0%
AGATTCTGGTGAGGTTAATT+TGG + tig0023857:69269-69288 Msa1411980:CDS 35.0%
! GGTTAATTTGGAGGAGAAAA+AGG + tig0023857:69281-69300 Msa1411980:CDS 35.0%
CATTAGAATTGTCCCTAAAG+CGG - tig0023857:69359-69378 None:intergenic 35.0%
ATGAAAAAGATACCTTTGGC+GGG - tig0023857:69382-69401 None:intergenic 35.0%
GATGAAAAAGATACCTTTGG+CGG - tig0023857:69383-69402 None:intergenic 35.0%
TTACGGATACTTTAGATCGA+AGG + tig0023857:69514-69533 Msa1411980:intron 35.0%
CATGTTGCTATGTACCAAAT+AGG + tig0023857:69623-69642 Msa1411980:intron 35.0%
CATATACAAGGCAACCTATT+TGG - tig0023857:69640-69659 None:intergenic 35.0%
!! TGTTTAGTGTTACTTTGACC+TGG + tig0023857:69662-69681 Msa1411980:intron 35.0%
!!! TGTCATAGAGTGTGTTGTTT+TGG + tig0023857:69708-69727 Msa1411980:intron 35.0%
! CACGCATTGACACTAATAAT+TGG - tig0023857:69812-69831 None:intergenic 35.0%
AGTCCAAAGATGACAAGAAA+TGG + tig0023857:69936-69955 Msa1411980:CDS 35.0%
GTCCAAAGATGACAAGAAAT+GGG + tig0023857:69937-69956 Msa1411980:CDS 35.0%
TCCAAAGATGACAAGAAATG+GGG + tig0023857:69938-69957 Msa1411980:CDS 35.0%
ATGGGGACATGATAAATTTG+AGG + tig0023857:69955-69974 Msa1411980:CDS 35.0%
AGGAAATTTCAGTGCAAGAT+AGG + tig0023857:69975-69994 Msa1411980:CDS 35.0%
AAATTTAGAGGAGACCTTCT+AGG + tig0023857:70100-70119 Msa1411980:intron 35.0%
AATTTAGAGGAGACCTTCTA+GGG + tig0023857:70101-70120 Msa1411980:intron 35.0%
TGAAGGTAGCAATCAAAATC+AGG + tig0023857:70245-70264 Msa1411980:CDS 35.0%
!!! TACTGTTTATTTTGCACCTG+GGG - tig0023857:70342-70361 None:intergenic 35.0%
!!! CTTACTGTTTATTTTGCACC+TGG - tig0023857:70344-70363 None:intergenic 35.0%
ACATGATCACTATCATGTTG+AGG + tig0023857:70395-70414 Msa1411980:intron 35.0%
TCTTAGATCTAGGAAATCTC+AGG + tig0023857:70447-70466 Msa1411980:intron 35.0%
! ACATGTGAAGTTTTCTTAGC+AGG - tig0023857:70541-70560 None:intergenic 35.0%
GCCTATGAACAATGTTCATT+TGG + tig0023857:70804-70823 Msa1411980:CDS 35.0%
GCCAAATGAACATTGTTCAT+AGG - tig0023857:70808-70827 None:intergenic 35.0%
GAAAAGGAGATTGAGAAACA+TGG - tig0023857:70852-70871 None:intergenic 35.0%
!! GGTTGGTAATTCATCTGTAA+TGG - tig0023857:70910-70929 None:intergenic 35.0%
! ATTGATGCAGATCTTTTTGG+TGG - tig0023857:71084-71103 None:intergenic 35.0%
TAGTTACAAACCTGGTAAGA+AGG - tig0023857:71292-71311 None:intergenic 35.0%
! AATTTTGGATCCTGTCTACT+TGG + tig0023857:71330-71349 Msa1411980:intron 35.0%
TCTGTCAAACCAATGCATTA+TGG + tig0023857:71630-71649 Msa1411980:intron 35.0%
GGGTTTGGATAATATACTTG+GGG + tig0023857:71696-71715 Msa1411980:intron 35.0%
TGGATAATATACTTGGGGTT+AGG + tig0023857:71701-71720 Msa1411980:intron 35.0%
TCTTTCTTTCAAAGTACAGG+AGG + tig0023857:71741-71760 Msa1411980:intron 35.0%
TATTGTCATCTTTAGCCCTA+CGG + tig0023857:71806-71825 Msa1411980:intron 35.0%
TGGGAAAATCAGAAATGACA+TGG + tig0023857:72010-72029 Msa1411980:CDS 35.0%
CCTTGAATTATCAATTGCTG+AGG - tig0023857:72238-72257 None:intergenic 35.0%
! CCTCAGCAATTGATAATTCA+AGG + tig0023857:72235-72254 Msa1411980:CDS 35.0%
CTGCAATATCGCAAATGAAA+TGG - tig0023857:72299-72318 None:intergenic 35.0%
! ATTTTACCAGTTTTTTGCGG+TGG - tig0023857:72416-72435 None:intergenic 35.0%
CTGATGTAACCAAAGTCAAA+AGG - tig0023857:72465-72484 None:intergenic 35.0%
!! CTTTTATTTGTCTGTAGAGC+TGG + tig0023857:72496-72515 Msa1411980:intron 35.0%
!! TGGTCAGTGAGGTTTTATAT+AGG + tig0023857:72671-72690 Msa1411980:intron 35.0%
ATCAAAAGCTGGAGAACAAA+GGG - tig0023857:72823-72842 None:intergenic 35.0%
ATTATGGAAGGGAAAGAAAG+GGG - tig0023857:72988-73007 None:intergenic 35.0%
CATTATGGAAGGGAAAGAAA+GGG - tig0023857:72989-73008 None:intergenic 35.0%
ACATTATGGAAGGGAAAGAA+AGG - tig0023857:72990-73009 None:intergenic 35.0%
! CAGGTGTTATATAACTGCAA+GGG - tig0023857:73015-73034 None:intergenic 35.0%
CTGAAGTTATTGCAGTTTGA+CGG + tig0023857:73054-73073 Msa1411980:three_prime_UTR 35.0%
TGAAGTTATTGCAGTTTGAC+GGG + tig0023857:73055-73074 Msa1411980:three_prime_UTR 35.0%
GGATCCATATGAATTTCAAC+CGG + tig0023857:73205-73224 Msa1411980:intron 35.0%
!!! CCATGTAACACTTGTTTTAC+CGG - tig0023857:73227-73246 None:intergenic 35.0%
! TCAGGTTTTTCTTGCTTGTT+TGG + tig0023857:73336-73355 Msa1411980:intron 35.0%
AGTAGGAATATCAAGAAGCA+CGG - tig0023857:73584-73603 None:intergenic 35.0%
TGTCTTCAAAGACTGTTGTT+TGG + tig0023857:73731-73750 Msa1411980:three_prime_UTR 35.0%
CACTCCTAAATCTCCAATCT+AGG + tig0023857:68558-68577 Msa1411980:five_prime_UTR 40.0%
ATTGAAAGGAAGGGATTGAG+CGG - tig0023857:68601-68620 None:intergenic 40.0%
!!! TGTGGGGTTCTTGTTTTTTG+GGG + tig0023857:68816-68835 Msa1411980:five_prime_UTR 40.0%
GATGAAGAAGAAGAGGAAAG+AGG + tig0023857:68982-69001 Msa1411980:CDS 40.0%
TGAAGAAGAAGAGGAAAGAG+GGG + tig0023857:68984-69003 Msa1411980:CDS 40.0%
AGAGTGAAGATCTTCGTGTT+AGG + tig0023857:69034-69053 Msa1411980:CDS 40.0%
GAGTGAAGATCTTCGTGTTA+GGG + tig0023857:69035-69054 Msa1411980:CDS 40.0%
GTTCGTTCTGATGATTCAGA+AGG + tig0023857:69057-69076 Msa1411980:CDS 40.0%
TCTGATGATTCAGAAGGTGA+AGG + tig0023857:69063-69082 Msa1411980:CDS 40.0%
GTTTATGAGGAGAAAGGTGA+AGG + tig0023857:69177-69196 Msa1411980:CDS 40.0%
! TGGTTCTGTGATTGTGGTTA+AGG + tig0023857:69209-69228 Msa1411980:CDS 40.0%
! TTCTGGTGAGGTTAATTTGG+AGG + tig0023857:69272-69291 Msa1411980:CDS 40.0%
! TAACTCCGACTTTTCAAAGG+CGG + tig0023857:69888-69907 Msa1411980:intron 40.0%
TCCCCATTTCTTGTCATCTT+TGG - tig0023857:69942-69961 None:intergenic 40.0%
ATTTAGAGGAGACCTTCTAG+GGG + tig0023857:70102-70121 Msa1411980:intron 40.0%
!! CTTCTAGGGGTAATTTTCGA+GGG + tig0023857:70115-70134 Msa1411980:CDS 40.0%
CAATCAAAATCAGGTGCCTA+AGG + tig0023857:70254-70273 Msa1411980:CDS 40.0%
CTTCCTTTCACAACAACCTT+AGG - tig0023857:70273-70292 None:intergenic 40.0%
AAGGTTGTTGTGAAAGGAAG+AGG + tig0023857:70273-70292 Msa1411980:CDS 40.0%
AGGTTGTTGTGAAAGGAAGA+GGG + tig0023857:70274-70293 Msa1411980:CDS 40.0%
! TTCTGCATTGGATGATGGTA+TGG - tig0023857:70506-70525 None:intergenic 40.0%
TCAGATTCTGCATTGGATGA+TGG - tig0023857:70511-70530 None:intergenic 40.0%
! AAGTTTTCTTAGCAGGCACA+GGG - tig0023857:70534-70553 None:intergenic 40.0%
!! ATTTGGACATCCCGTTTTTG+TGG - tig0023857:70634-70653 None:intergenic 40.0%
CAAAAACGGGATGTCCAAAT+TGG + tig0023857:70634-70653 Msa1411980:CDS 40.0%
CAGGAATATTCACCCAGTTA+TGG + tig0023857:70666-70685 Msa1411980:CDS 40.0%
TATTCACCCAGTTATGGATG+AGG + tig0023857:70672-70691 Msa1411980:CDS 40.0%
ATTCACCCAGTTATGGATGA+GGG + tig0023857:70673-70692 Msa1411980:CDS 40.0%
GAAAACCCTCATCCATAACT+GGG - tig0023857:70681-70700 None:intergenic 40.0%
! AGTTATGGATGAGGGTTTTC+CGG + tig0023857:70681-70700 Msa1411980:CDS 40.0%
!! TGTTGTTGATTCCATCAGCA+TGG + tig0023857:70738-70757 Msa1411980:CDS 40.0%
TCATAGGCTTTCCAACAGAT+GGG - tig0023857:70792-70811 None:intergenic 40.0%
TTCATAGGCTTTCCAACAGA+TGG - tig0023857:70793-70812 None:intergenic 40.0%
! TTTCTCAATCTCCTTTTCCC+AGG + tig0023857:70854-70873 Msa1411980:CDS 40.0%
! TGATTCTGGAGAAACAGATG+TGG + tig0023857:71113-71132 Msa1411980:CDS 40.0%
!! TTTGGCTTTACCTGATTCTG+AGG - tig0023857:71139-71158 None:intergenic 40.0%
TCAGAATCAGGTAAAGCCAA+AGG + tig0023857:71138-71157 Msa1411980:CDS 40.0%
TACAAACCTGGTAAGAAGGT+GGG - tig0023857:71288-71307 None:intergenic 40.0%
TTACAAACCTGGTAAGAAGG+TGG - tig0023857:71289-71308 None:intergenic 40.0%
ATATACTTGGGGTTAGGTCT+TGG + tig0023857:71707-71726 Msa1411980:intron 40.0%
TATACTTGGGGTTAGGTCTT+GGG + tig0023857:71708-71727 Msa1411980:intron 40.0%
! TACAGGAGGTATGTGAGATT+GGG + tig0023857:71755-71774 Msa1411980:intron 40.0%
TTGGATGCAGTCATGCAATT+TGG + tig0023857:71907-71926 Msa1411980:intron 40.0%
! GAGGATTAGCAACATATCCA+GGG - tig0023857:71981-72000 None:intergenic 40.0%
! TGAGGATTAGCAACATATCC+AGG - tig0023857:71982-72001 None:intergenic 40.0%
TATGTTGCTAATCCTCAGCT+TGG + tig0023857:71985-72004 Msa1411980:CDS 40.0%
TGTATATAGGCTACCAGTCT+TGG + tig0023857:72128-72147 Msa1411980:intron 40.0%
! TCACATTTTCCTTGCTGCAA+AGG - tig0023857:72370-72389 None:intergenic 40.0%
GAGCTGGTAAATGATGAGTA+TGG + tig0023857:72512-72531 Msa1411980:intron 40.0%
!! GAGATGAATTTTGGTCAGTG+AGG + tig0023857:72660-72679 Msa1411980:intron 40.0%
GATCAAAAGCTGGAGAACAA+AGG - tig0023857:72824-72843 None:intergenic 40.0%
! TTGTTCTCCAGCTTTTGATC+TGG + tig0023857:72824-72843 Msa1411980:three_prime_UTR 40.0%
!! CTTTTGATCTGGAGCACTTT+GGG + tig0023857:72835-72854 Msa1411980:three_prime_UTR 40.0%
TTATGGAAGGGAAAGAAAGG+GGG - tig0023857:72987-73006 None:intergenic 40.0%
TAACTGCAAGGGCAACATTA+TGG - tig0023857:73004-73023 None:intergenic 40.0%
! GCAGGTGTTATATAACTGCA+AGG - tig0023857:73016-73035 None:intergenic 40.0%
CTGCAATAACTTCAGGAATG+TGG - tig0023857:73049-73068 None:intergenic 40.0%
CGTCAAACTGCAATAACTTC+AGG - tig0023857:73056-73075 None:intergenic 40.0%
CCGGTAAAACAAGTGTTACA+TGG + tig0023857:73224-73243 Msa1411980:intron 40.0%
AAGCTTGTGAGAAACTAGTC+AGG + tig0023857:73369-73388 Msa1411980:three_prime_UTR 40.0%
! CTTCAAAGACTGTTGTTTGG+CGG + tig0023857:73734-73753 Msa1411980:three_prime_UTR 40.0%
CGGCAAACTTCATATGTTCA+CGG + tig0023857:73754-73773 Msa1411980:three_prime_UTR 40.0%
! TGGGATCTGAAACCCTAGAT+TGG - tig0023857:68574-68593 None:intergenic 45.0%
TTGAAAGGAAGGGATTGAGC+GGG - tig0023857:68600-68619 None:intergenic 45.0%
!!! CGTTTTACGGTTCTGGGTTT+TGG + tig0023857:68774-68793 Msa1411980:five_prime_UTR 45.0%
!!! GTTCTGGGTTTTGGAATTCG+TGG + tig0023857:68783-68802 Msa1411980:five_prime_UTR 45.0%
GATGATTCAGAAGGTGAAGG+TGG + tig0023857:69066-69085 Msa1411980:CDS 45.0%
! TGAGGAAGAAGAGTATGAGG+AGG + tig0023857:69140-69159 Msa1411980:CDS 45.0%
! GAGGAAGAAGAGTATGAGGA+GGG + tig0023857:69141-69160 Msa1411980:CDS 45.0%
TATGAGGAGAAAGGTGAAGG+TGG + tig0023857:69180-69199 Msa1411980:CDS 45.0%
ATGAGGAGAAAGGTGAAGGT+GGG + tig0023857:69181-69200 Msa1411980:CDS 45.0%
!! GGTTGATGGTTCTGTGATTG+TGG + tig0023857:69203-69222 Msa1411980:CDS 45.0%
GTGGTTAAGGAATCTGATGG+TGG + tig0023857:69222-69241 Msa1411980:CDS 45.0%
!! TAAGGAATCTGATGGTGGTG+TGG + tig0023857:69227-69246 Msa1411980:CDS 45.0%
GGAAGAAGAAGATTCTGGTG+AGG + tig0023857:69260-69279 Msa1411980:CDS 45.0%
!! ATGTAAAAGGCACCAGCAGT+GGG - tig0023857:69327-69346 None:intergenic 45.0%
GCGGTCATCATGCATGTAAA+AGG - tig0023857:69340-69359 None:intergenic 45.0%
ACATGCATGATGACCGCTTT+AGG + tig0023857:69343-69362 Msa1411980:CDS 45.0%
CATGCATGATGACCGCTTTA+GGG + tig0023857:69344-69363 Msa1411980:CDS 45.0%
ACAATTCTAATGCCCGCCAA+AGG + tig0023857:69367-69386 Msa1411980:CDS 45.0%
TTAGTGTCAAAGCGTGAGTC+AGG + tig0023857:69576-69595 Msa1411980:intron 45.0%
TAGTGTCAAAGCGTGAGTCA+GGG + tig0023857:69577-69596 Msa1411980:intron 45.0%
GTGCGTACACTTTAGATCGA+AGG + tig0023857:69736-69755 Msa1411980:intron 45.0%
! TGCATCCGCCTTTGAAAAGT+CGG - tig0023857:69896-69915 None:intergenic 45.0%
! ACTTTTCAAAGGCGGATGCA+TGG + tig0023857:69896-69915 Msa1411980:intron 45.0%
CCTCGAAAATTACCCCTAGA+AGG - tig0023857:70117-70136 None:intergenic 45.0%
!! CCTTCTAGGGGTAATTTTCG+AGG + tig0023857:70114-70133 Msa1411980:CDS 45.0%
GTGCCTAAGGTTGTTGTGAA+AGG + tig0023857:70267-70286 Msa1411980:CDS 45.0%
TTGGTAGGTTCATACCTTCG+AGG - tig0023857:70300-70319 None:intergenic 45.0%
GGTATGAACCTACCAACAGA+AGG + tig0023857:70304-70323 Msa1411980:CDS 45.0%
GAACCTACCAACAGAAGGAA+TGG + tig0023857:70309-70328 Msa1411980:CDS 45.0%
! GAAGTTTTCTTAGCAGGCAC+AGG - tig0023857:70535-70554 None:intergenic 45.0%
TCTTTGTTAGAAGAGCCCGA+GGG - tig0023857:70601-70620 None:intergenic 45.0%
TTCTTTGTTAGAAGAGCCCG+AGG - tig0023857:70602-70621 None:intergenic 45.0%
AACTGGGTGAATATTCCTGC+TGG - tig0023857:70665-70684 None:intergenic 45.0%
GGAAAACCCTCATCCATAAC+TGG - tig0023857:70682-70701 None:intergenic 45.0%
ATACAGCTTGTCCATGCTGA+TGG - tig0023857:70752-70771 None:intergenic 45.0%
ACTTGAGTATGTGAGGGAAC+AGG - tig0023857:70931-70950 None:intergenic 45.0%
AGTTTCTCCAACACAACTGC+AGG + tig0023857:70957-70976 Msa1411980:CDS 45.0%
TGAATAGCCTGCAGTTGTGT+TGG - tig0023857:70967-70986 None:intergenic 45.0%
ATTCAGAGAAGTTCTGCACC+AGG + tig0023857:70982-71001 Msa1411980:CDS 45.0%
TTCAGAGAAGTTCTGCACCA+GGG + tig0023857:70983-71002 Msa1411980:CDS 45.0%
GAAGATTGAGATCCACTACC+AGG - tig0023857:71057-71076 None:intergenic 45.0%
! AGGTAAAGCCAAAGGTGCAT+TGG + tig0023857:71146-71165 Msa1411980:CDS 45.0%
! TAAAGCCAAAGGTGCATTGG+TGG + tig0023857:71149-71168 Msa1411980:CDS 45.0%
! AAAGCCAAAGGTGCATTGGT+GGG + tig0023857:71150-71169 Msa1411980:CDS 45.0%
TAAACAAAAGGTCCCCTTCC+AGG - tig0023857:71201-71220 None:intergenic 45.0%
!! GGAAGGGGACCTTTTGTTTA+TGG + tig0023857:71201-71220 Msa1411980:CDS 45.0%
!! AGGGGACCTTTTGTTTATGG+TGG + tig0023857:71204-71223 Msa1411980:CDS 45.0%
!! GGGGACCTTTTGTTTATGGT+GGG + tig0023857:71205-71224 Msa1411980:CDS 45.0%
!! GGGACCTTTTGTTTATGGTG+GGG + tig0023857:71206-71225 Msa1411980:CDS 45.0%
TGTGCCCCACCATAAACAAA+AGG - tig0023857:71213-71232 None:intergenic 45.0%
!! TTTTGTTTATGGTGGGGCAC+AGG + tig0023857:71212-71231 Msa1411980:CDS 45.0%
!! AATGGGTGCTGCTGGAAATA+TGG + tig0023857:71236-71255 Msa1411980:CDS 45.0%
!! ATGGGTGCTGCTGGAAATAT+GGG + tig0023857:71237-71256 Msa1411980:CDS 45.0%
GGAAATATGGGCATCAGTCA+AGG + tig0023857:71249-71268 Msa1411980:CDS 45.0%
ACAAACCTGGTAAGAAGGTG+GGG - tig0023857:71287-71306 None:intergenic 45.0%
AGAACTTGCACCAAGTAGAC+AGG - tig0023857:71343-71362 None:intergenic 45.0%
! GTACAGGAGGTATGTGAGAT+TGG + tig0023857:71754-71773 Msa1411980:intron 45.0%
! TATGTGAGATTGGGTACTGC+AGG + tig0023857:71764-71783 Msa1411980:intron 45.0%
GATGCAGTCATGCAATTTGG+AGG + tig0023857:71910-71929 Msa1411980:intron 45.0%
TGCTAATCCTCAGCTTGGTT+TGG + tig0023857:71990-72009 Msa1411980:CDS 45.0%
GCTAATCCTCAGCTTGGTTT+GGG + tig0023857:71991-72010 Msa1411980:CDS 45.0%
! GATTTTCCCAAACCAAGCTG+AGG - tig0023857:72000-72019 None:intergenic 45.0%
TGGTAGCCTATATACAGACG+AGG - tig0023857:72124-72143 None:intergenic 45.0%
!! TCACCATACCTTGCTGTTGA+CGG + tig0023857:72186-72205 Msa1411980:CDS 45.0%
TTGAAGCCACCGCAAAAAAC+TGG + tig0023857:72407-72426 Msa1411980:CDS 45.0%
AACGACAGAATAAACCTCGC+AGG + tig0023857:72537-72556 Msa1411980:CDS 45.0%
AATAAACCTCGCAGGCAAGT+TGG + tig0023857:72545-72564 Msa1411980:CDS 45.0%
GTTATGCAGGCCTTACTCTT+AGG + tig0023857:72797-72816 Msa1411980:intron 45.0%
GAACAAAGGGCCTAAGAGTA+AGG - tig0023857:72810-72829 None:intergenic 45.0%
AAGTGCTCCAGATCAAAAGC+TGG - tig0023857:72834-72853 None:intergenic 45.0%
!! GCTTTTGATCTGGAGCACTT+TGG + tig0023857:72834-72853 Msa1411980:three_prime_UTR 45.0%
TATGGAAGGGAAAGAAAGGG+GGG - tig0023857:72986-73005 None:intergenic 45.0%
GCAAGGGCAACATTATGGAA+GGG - tig0023857:72999-73018 None:intergenic 45.0%
TGCAAGGGCAACATTATGGA+AGG - tig0023857:73000-73019 None:intergenic 45.0%
AGTTATTGCAGTTTGACGGG+TGG + tig0023857:73058-73077 Msa1411980:three_prime_UTR 45.0%
TTTCCAACACACCCTCCTAT+TGG + tig0023857:73151-73170 Msa1411980:intron 45.0%
! GTCAGGCTTTTCGTGAACTA+TGG + tig0023857:73386-73405 Msa1411980:three_prime_UTR 45.0%
TGAAGCAGCTGATTGCATCA+TGG + tig0023857:73438-73457 Msa1411980:three_prime_UTR 45.0%
TGAAAGGAAGGGATTGAGCG+GGG - tig0023857:68599-68618 None:intergenic 50.0%
AGCGATCTTTGCGTCTCTTC+AGG - tig0023857:68931-68950 None:intergenic 50.0%
TCTTACAATGCGGAGACGTG+AGG + tig0023857:68951-68970 Msa1411980:CDS 50.0%
TGAGGAGAAAGGTGAAGGTG+GGG + tig0023857:69182-69201 Msa1411980:CDS 50.0%
AAAGGTGAAGGTGGGGTTGA+TGG + tig0023857:69189-69208 Msa1411980:CDS 50.0%
!! CATGTAAAAGGCACCAGCAG+TGG - tig0023857:69328-69347 None:intergenic 50.0%
! TTAGATCGAAGGCACGTGCA+TGG + tig0023857:69525-69544 Msa1411980:intron 50.0%
TTTCAAAGGCGGATGCATGG+TGG + tig0023857:69899-69918 Msa1411980:intron 50.0%
! TGCATGGTGGAAGGAGATTG+TGG + tig0023857:69912-69931 Msa1411980:intron 50.0%
! GCATGGTGGAAGGAGATTGT+GGG + tig0023857:69913-69932 Msa1411980:intron 50.0%
GCAAGATAGGCGCTATGATG+AGG + tig0023857:69988-70007 Msa1411980:CDS 50.0%
GAGGACATGTTCGAGGAAAC+AGG + tig0023857:70166-70185 Msa1411980:CDS 50.0%
GGACCATTCCTTCTGTTGGT+AGG - tig0023857:70315-70334 None:intergenic 50.0%
AGCTGGACCATTCCTTCTGT+TGG - tig0023857:70319-70338 None:intergenic 50.0%
!! TTATTTTGCACCTGGGGAGC+TGG - tig0023857:70336-70355 None:intergenic 50.0%
CACAGGGTCAGATTCTGCAT+TGG - tig0023857:70518-70537 None:intergenic 50.0%
! ATCCCCTCCATTTTACCCCT+CGG + tig0023857:70582-70601 Msa1411980:CDS 50.0%
CTTTGTTAGAAGAGCCCGAG+GGG - tig0023857:70600-70619 None:intergenic 50.0%
TAGGCTTTCCAACAGATGGG+CGG - tig0023857:70789-70808 None:intergenic 50.0%
AATGTTCATTTGGCACCGCC+TGG + tig0023857:70814-70833 Msa1411980:CDS 50.0%
ACATGGACACCAGAAGATCC+AGG - tig0023857:70835-70854 None:intergenic 50.0%
GAGTATGTGAGGGAACAGGT+TGG - tig0023857:70927-70946 None:intergenic 50.0%
ACAGACGTTAAAGTCTGCCC+TGG - tig0023857:71003-71022 None:intergenic 50.0%
ACAGATGTGGCCTCAGAATC+AGG + tig0023857:71126-71145 Msa1411980:CDS 50.0%
! AAGCCAAAGGTGCATTGGTG+GGG + tig0023857:71151-71170 Msa1411980:CDS 50.0%
! AAAGGTGCATTGGTGGGGAA+GGG + tig0023857:71156-71175 Msa1411980:CDS 50.0%
! TTATGGTGGGGCACAGGTAA+TGG + tig0023857:71218-71237 Msa1411980:CDS 50.0%
! TATGGTGGGGCACAGGTAAT+GGG + tig0023857:71219-71238 Msa1411980:CDS 50.0%
GGTAAGAAGGTGGGGAAGTT+TGG - tig0023857:71279-71298 None:intergenic 50.0%
AACTTCCCCACCTTCTTACC+AGG + tig0023857:71279-71298 Msa1411980:CDS 50.0%
TATAGGCTACCAGTCTTGGC+TGG + tig0023857:72132-72151 Msa1411980:intron 50.0%
! TGTAAGCACCGTCAACAGCA+AGG - tig0023857:72197-72216 None:intergenic 50.0%
TCAATTGCTGAGGTCTGTCC+CGG - tig0023857:72228-72247 None:intergenic 50.0%
GAATGTGGAACAGCATGAGC+AGG - tig0023857:73034-73053 None:intergenic 50.0%
! CAACCAATAGGAGGGTGTGT+TGG - tig0023857:73157-73176 None:intergenic 50.0%
GAAGGGATTGAGCGGGGATT+GGG - tig0023857:68593-68612 None:intergenic 55.0%
GAAGAAGAGGAAAGAGGGGC+AGG + tig0023857:68988-69007 Msa1411980:CDS 55.0%
! TGGTGGTGTGGTACCCTCTT+TGG + tig0023857:69239-69258 Msa1411980:CDS 55.0%
GCGTGAGTCAGGGTCATGTA+TGG + tig0023857:69587-69606 Msa1411980:intron 55.0%
! AAAGGCGGATGCATGGTGGA+AGG + tig0023857:69903-69922 Msa1411980:intron 55.0%
!! AGGGGTAATTTTCGAGGGCG+TGG + tig0023857:70120-70139 Msa1411980:CDS 55.0%
CGTGGTAGAATTCGTGGCAC+TGG + tig0023857:70138-70157 Msa1411980:CDS 55.0%
!! AGAATTCGTGGCACTGGTCG+TGG + tig0023857:70144-70163 Msa1411980:CDS 55.0%
TGAAAGGAAGAGGGCCTCGA+AGG + tig0023857:70283-70302 Msa1411980:CDS 55.0%
! TCCCCTCCATTTTACCCCTC+GGG + tig0023857:70583-70602 Msa1411980:CDS 55.0%
AGCCCGAGGGGTAAAATGGA+GGG - tig0023857:70588-70607 None:intergenic 55.0%
GAAGAGCCCGAGGGGTAAAA+TGG - tig0023857:70592-70611 None:intergenic 55.0%
TCCAAATTGGCAGCACCAGC+AGG + tig0023857:70647-70666 Msa1411980:CDS 55.0%
!! TCCTGCTGGTGCTGCCAATT+TGG - tig0023857:70651-70670 None:intergenic 55.0%
TGGACACCAGAAGATCCAGG+CGG - tig0023857:70832-70851 None:intergenic 55.0%
CAAGCTACTGCCCCACAGAT+GGG + tig0023857:71024-71043 Msa1411980:CDS 55.0%
GAGATCCACTACCAGGTCGA+TGG - tig0023857:71050-71069 None:intergenic 55.0%
CTTCCCCACCAATGCACCTT+TGG - tig0023857:71157-71176 None:intergenic 55.0%
! CAAAGGTGCATTGGTGGGGA+AGG + tig0023857:71155-71174 Msa1411980:CDS 55.0%
! GCATTGGTGGGGAAGGGAAA+TGG + tig0023857:71162-71181 Msa1411980:CDS 55.0%
AAGGGAAATGGTGCTCCCCA+GGG + tig0023857:71174-71193 Msa1411980:CDS 55.0%
CAATTTGGAGGCCAGCATCC+TGG + tig0023857:71922-71941 Msa1411980:CDS 55.0%
!! CTGGTGCTGCAGGAGCTTTA+GGG + tig0023857:72151-72170 Msa1411980:CDS 55.0%
!! TGGTGCTGCAGGAGCTTTAG+GGG + tig0023857:72152-72171 Msa1411980:CDS 55.0%
GCACCGTCAACAGCAAGGTA+TGG - tig0023857:72192-72211 None:intergenic 55.0%
CGGTGCTTACAGTCGTCAAC+CGG + tig0023857:72206-72225 Msa1411980:CDS 55.0%
GGTGCTTACAGTCGTCAACC+GGG + tig0023857:72207-72226 Msa1411980:CDS 55.0%
TGCGACGAACCTTTGCAGCA+AGG + tig0023857:72358-72377 Msa1411980:intron 55.0%
GGAAGGGATTGAGCGGGGAT+TGG - tig0023857:68594-68613 None:intergenic 60.0%
CCAGCAGTGGGCACAGCAAA+TGG - tig0023857:69315-69334 None:intergenic 60.0%
!! CCATTTGCTGTGCCCACTGC+TGG + tig0023857:69312-69331 Msa1411980:CDS 60.0%
! CGAGGGCGTGGTAGAATTCG+TGG + tig0023857:70132-70151 Msa1411980:CDS 60.0%
!! ATTCGTGGCACTGGTCGTGG+AGG + tig0023857:70147-70166 Msa1411980:CDS 60.0%
GGTCGTGGAGGACATGTTCG+AGG + tig0023857:70159-70178 Msa1411980:CDS 60.0%
AAGGAATGGTCCAGCTCCCC+AGG + tig0023857:70323-70342 Msa1411980:CDS 60.0%
GCCCGAGGGGTAAAATGGAG+GGG - tig0023857:70587-70606 None:intergenic 60.0%
GAGCCCGAGGGGTAAAATGG+AGG - tig0023857:70589-70608 None:intergenic 60.0%
CAGTCTGTCCGCCCATCTGT+TGG + tig0023857:70778-70797 Msa1411980:CDS 60.0%
TTGGCACCGCCTGGATCTTC+TGG + tig0023857:70823-70842 Msa1411980:CDS 60.0%
! TCTCCTTTTCCCAGGCCTGC+TGG + tig0023857:70862-70881 Msa1411980:CDS 60.0%
! CTCCTTTTCCCAGGCCTGCT+GGG + tig0023857:70863-70882 Msa1411980:CDS 60.0%
GCAAGCTACTGCCCCACAGA+TGG + tig0023857:71023-71042 Msa1411980:CDS 60.0%
AGGTCGATGGCCCATCTGTG+GGG - tig0023857:71037-71056 None:intergenic 60.0%
CAGGTCGATGGCCCATCTGT+GGG - tig0023857:71038-71057 None:intergenic 60.0%
ATGGGCCATCGACCTGGTAG+TGG + tig0023857:71042-71061 Msa1411980:CDS 60.0%
GAAGGGAAATGGTGCTCCCC+AGG + tig0023857:71173-71192 Msa1411980:CDS 60.0%
!! GCACAGGTAATGGGTGCTGC+TGG + tig0023857:71228-71247 Msa1411980:CDS 60.0%
TTTGGAGGCCAGCATCCTGG+TGG + tig0023857:71925-71944 Msa1411980:CDS 60.0%
AGGCCAGCATCCTGGTGGTA+TGG + tig0023857:71930-71949 Msa1411980:CDS 60.0%
GGCCAGCATCCTGGTGGTAT+GGG + tig0023857:71931-71950 Msa1411980:CDS 60.0%
CTCCCATACCACCAGGATGC+TGG - tig0023857:71936-71955 None:intergenic 60.0%
GCTGTTGGCATGGCATTCCC+TGG + tig0023857:71961-71980 Msa1411980:CDS 60.0%
!! GCTGGTGCTGCAGGAGCTTT+AGG + tig0023857:72150-72169 Msa1411980:CDS 60.0%
TGCAAGCCAACTTGCCTGCG+AGG - tig0023857:72554-72573 None:intergenic 60.0%
CCAGGTCGATGGCCCATCTG+TGG - tig0023857:71039-71058 None:intergenic 65.0%
CCACAGATGGGCCATCGACC+TGG + tig0023857:71036-71055 Msa1411980:CDS 65.0%
AATGGTGCTCCCCAGGGTCC+TGG + tig0023857:71180-71199 Msa1411980:CDS 65.0%
TGCTCCCCAGGGTCCTGGAA+GGG + tig0023857:71185-71204 Msa1411980:CDS 65.0%
AGGTCCCCTTCCAGGACCCT+GGG - tig0023857:71193-71212 None:intergenic 65.0%
AAGGTCCCCTTCCAGGACCC+TGG - tig0023857:71194-71213 None:intergenic 65.0%
CCTGCAGCACCAGCCAAGAC+TGG - tig0023857:72144-72163 None:intergenic 65.0%
!! CCAGTCTTGGCTGGTGCTGC+AGG + tig0023857:72141-72160 Msa1411980:CDS 65.0%
GGCCCAGCAGGCCTGGGAAA+AGG - tig0023857:70868-70887 None:intergenic 70.0%
TTTCCCAGGCCTGCTGGGCC+TGG + tig0023857:70868-70887 Msa1411980:CDS 70.0%
TTCCCAGGCCTGCTGGGCCT+GGG + tig0023857:70869-70888 Msa1411980:CDS 70.0%
GGGATCGGTGCACCTCTCCC+AGG - tig0023857:70889-70908 None:intergenic 70.0%
GTGCTCCCCAGGGTCCTGGA+AGG + tig0023857:71184-71203 Msa1411980:CDS 70.0%
GCTCCCCAGGGTCCTGGAAG+GGG + tig0023857:71186-71205 Msa1411980:CDS 70.0%
GGTCCCCTTCCAGGACCCTG+GGG - tig0023857:71192-71211 None:intergenic 70.0%
CTCCCAGGCCCAGCAGGCCT+GGG - tig0023857:70874-70893 None:intergenic 75.0%
TCTCCCAGGCCCAGCAGGCC+TGG - tig0023857:70875-70894 None:intergenic 75.0%
AGGCCTGCTGGGCCTGGGAG+AGG + tig0023857:70874-70893 Msa1411980:CDS 75.0%
GCACCTCTCCCAGGCCCAGC+AGG - tig0023857:70880-70899 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0023857 gene 68460 73786 68460 ID=Msa1411980;Name=Msa1411980
tig0023857 mRNA 68460 73786 68460 ID=Msa1411980-mRNA-1;Parent=Msa1411980;Name=Msa1411980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=423|0.8|0.81|1|0.8|0.81|11|594|716
tig0023857 exon 68460 69388 68460 ID=Msa1411980-mRNA-1:exon:20359;Parent=Msa1411980-mRNA-1
tig0023857 exon 69925 70009 69925 ID=Msa1411980-mRNA-1:exon:20360;Parent=Msa1411980-mRNA-1
tig0023857 exon 70108 70358 70108 ID=Msa1411980-mRNA-1:exon:20361;Parent=Msa1411980-mRNA-1
tig0023857 exon 70453 71300 70453 ID=Msa1411980-mRNA-1:exon:20362;Parent=Msa1411980-mRNA-1
tig0023857 exon 71917 72031 71917 ID=Msa1411980-mRNA-1:exon:20363;Parent=Msa1411980-mRNA-1
tig0023857 exon 72137 72256 72137 ID=Msa1411980-mRNA-1:exon:20364;Parent=Msa1411980-mRNA-1
tig0023857 exon 72376 72428 72376 ID=Msa1411980-mRNA-1:exon:20365;Parent=Msa1411980-mRNA-1
tig0023857 exon 72513 72672 72513 ID=Msa1411980-mRNA-1:exon:20366;Parent=Msa1411980-mRNA-1
tig0023857 exon 72806 72883 72806 ID=Msa1411980-mRNA-1:exon:20367;Parent=Msa1411980-mRNA-1
tig0023857 exon 73021 73102 73021 ID=Msa1411980-mRNA-1:exon:20368;Parent=Msa1411980-mRNA-1
tig0023857 exon 73340 73786 73340 ID=Msa1411980-mRNA-1:exon:20369;Parent=Msa1411980-mRNA-1
tig0023857 five_prime_UTR 68460 68882 68460 ID=Msa1411980-mRNA-1:five_prime_utr;Parent=Msa1411980-mRNA-1
tig0023857 CDS 68883 69388 68883 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 CDS 69925 70009 69925 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 CDS 70108 70358 70108 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 CDS 70453 71300 70453 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 CDS 71917 72031 71917 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 CDS 72137 72256 72137 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 CDS 72376 72428 72376 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 CDS 72513 72672 72513 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 CDS 72806 72818 72806 ID=Msa1411980-mRNA-1:cds;Parent=Msa1411980-mRNA-1
tig0023857 three_prime_UTR 72819 72883 72819 ID=Msa1411980-mRNA-1:three_prime_utr;Parent=Msa1411980-mRNA-1
tig0023857 three_prime_UTR 73021 73102 73021 ID=Msa1411980-mRNA-1:three_prime_utr;Parent=Msa1411980-mRNA-1
tig0023857 three_prime_UTR 73340 73786 73340 ID=Msa1411980-mRNA-1:three_prime_utr;Parent=Msa1411980-mRNA-1
Gene Sequence

>Msa1411980

ATGGCTAATTCTGTTGCGGAAGAAGATGTTGATTACGAGAGTGATCCTGAAGAGACGCAAAGATCGCTTCTTACAATGCGGAGACGTGAGGCTAGTGATGATGAAGAAGAAGAGGAAAGAGGGGCAGGAGAAAGAGATGATGATTCAGTAAAGAGTGAAGATCTTCGTGTTAGGGTTCGTTCTGATGATTCAGAAGGTGAAGGTGGTGTTGCTGATTATGATGAAGATGATGAGGAAATTGAGGAAGAAGAAGAATATGAGGAAGAAGAGTATGAGGAGGGAGTTGAAGAAGAAGTTTATGAGGAGAAAGGTGAAGGTGGGGTTGATGGTTCTGTGATTGTGGTTAAGGAATCTGATGGTGGTGTGGTACCCTCTTTGGAAGAAGAAGATTCTGGTGAGGTTAATTTGGAGGAGAAAAAGGAGAATGAACCATTTGCTGTGCCCACTGCTGGTGCCTTTTACATGCATGATGACCGCTTTAGGGACAATTCTAATGCCCGCCAAAGGAGATTGTGGGAGTCCAAAGATGACAAGAAATGGGGACATGATAAATTTGAGGAAATTTCAGTGCAAGATAGGCGCTATGATGAGAGGAGACCTTCTAGGGGTAATTTTCGAGGGCGTGGTAGAATTCGTGGCACTGGTCGTGGAGGACATGTTCGAGGAAACAGGAGAGAATACAATGACAGAGAATATAACAACAGAGAATATAATAATAGAGAATATAATGAAGGTAGCAATCAAAATCAGGTGCCTAAGGTTGTTGTGAAAGGAAGAGGGCCTCGAAGGTATGAACCTACCAACAGAAGGAATGGTCCAGCTCCCCAGGTGCAAAATAAACAATCTAGGAAATCTCAGGAGAAAACTTCACGTGCTAGTTCAGAGAGAAACTCCATACCATCATCCAATGCAGAATCTGACCCTGTGCCTGCTAAGAAAACTTCACATGTTTCTTCAAATTTGAACTATGCATCCCCTCCATTTTACCCCTCGGGCTCTTCTAACAAAGAAATTAATCTGCCACAAAAACGGGATGTCCAAATTGGCAGCACCAGCAGGAATATTCACCCAGTTATGGATGAGGGTTTTCCGGTTCAACAAAACAATACAATTCATCGGGGAAAGAATGTTGTTGATTCCATCAGCATGGACAAGCTGTATATTGAGCAGTCTGTCCGCCCATCTGTTGGAAAGCCTATGAACAATGTTCATTTGGCACCGCCTGGATCTTCTGGTGTCCATGTTTCTCAATCTCCTTTTCCCAGGCCTGCTGGGCCTGGGAGAGGTGCACCGATCCCATTACAGATGAATTACCAACCTGTTCCCTCACATACTCAAGTAAATAAAGTTTCTCCAACACAACTGCAGGCTATTCAGAGAAGTTCTGCACCAGGGCAGACTTTAACGTCTGTGCAAGCTACTGCCCCACAGATGGGCCATCGACCTGGTAGTGGATCTCAATCTTCATCTCCACCAAAAAGATCTGCATCAATTAATTCACTTGATTCTGGAGAAACAGATGTGGCCTCAGAATCAGGTAAAGCCAAAGGTGCATTGGTGGGGAAGGGAAATGGTGCTCCCCAGGGTCCTGGAAGGGGACCTTTTGTTTATGGTGGGGCACAGGTAATGGGTGCTGCTGGAAATATGGGCATCAGTCAAGGAGATCCAAACTTCCCCACCTTCTTACCAGTCATGCAATTTGGAGGCCAGCATCCTGGTGGTATGGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATATGTTGCTAATCCTCAGCTTGGTTTGGGAAAATCAGAAATGACATGGCTACCAGTCTTGGCTGGTGCTGCAGGAGCTTTAGGGGCTCAATACTGTTCACCATACCTTGCTGTTGACGGTGCTTACAGTCGTCAACCGGGACAGACCTCAGCAATTGATAATTCAAGCAAGGAAAATGTGAATAAAGCTAATAATGAATTGAAGCCACCGCAAAAAACTGAGCTGGTAAATGATGAGTATGGACAACGACAGAATAAACCTCGCAGGCAAGTTGGCTTGCAAAATCATCTTTGCTGCTACCGTCATGATTGCATATTTCTCAAATCATTTCAATTAATGTTGGTTATGCTATCTATGCAGATATTCGGAGATGAATTTTGGCCTTACTCTTAG
Protein sequence

>Msa1411980

MANSVAEEDVDYESDPEETQRSLLTMRRREASDDEEEEERGAGERDDDSVKSEDLRVRVRSDDSEGEGGVADYDEDDEEIEEEEEYEEEEYEEGVEEEVYEEKGEGGVDGSVIVVKESDGGVVPSLEEEDSGEVNLEEKKENEPFAVPTAGAFYMHDDRFRDNSNARQRRLWESKDDKKWGHDKFEEISVQDRRYDERRPSRGNFRGRGRIRGTGRGGHVRGNRREYNDREYNNREYNNREYNEGSNQNQVPKVVVKGRGPRRYEPTNRRNGPAPQVQNKQSRKSQEKTSRASSERNSIPSSNAESDPVPAKKTSHVSSNLNYASPPFYPSGSSNKEINLPQKRDVQIGSTSRNIHPVMDEGFPVQQNNTIHRGKNVVDSISMDKLYIEQSVRPSVGKPMNNVHLAPPGSSGVHVSQSPFPRPAGPGRGAPIPLQMNYQPVPSHTQVNKVSPTQLQAIQRSSAPGQTLTSVQATAPQMGHRPGSGSQSSSPPKRSASINSLDSGETDVASESGKAKGALVGKGNGAPQGPGRGPFVYGGAQVMGAAGNMGISQGDPNFPTFLPVMQFGGQHPGGMGVPAVGMAFPGYVANPQLGLGKSEMTWLPVLAGAAGALGAQYCSPYLAVDGAYSRQPGQTSAIDNSSKENVNKANNELKPPQKTELVNDEYGQRQNKPRRQVGLQNHLCCYRHDCIFLKSFQLMLVMLSMQIFGDEFWPYS*