AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0533080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 86 sgRNAs with CRISPR-Local

Find 621 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCACCCTTCCTTGATTT+TGG 0.155500 4_1:-7775634 None:intergenic
TGTTGCCTCCCCAATGAATA+AGG 0.271513 4_1:+7775782 Msa0533080:CDS
CCACAAATGTGGAGCTTACT+TGG 0.287914 4_1:+7769390 Msa0533080:five_prime_UTR
TGTTGCCTCGGAGGATTAAA+AGG 0.339925 4_1:-7777400 None:intergenic
CATGAGTGGAATCGGTAAAT+AGG 0.347555 4_1:+7769414 Msa0533080:five_prime_UTR
AGCTCATATGGAAGCTGTTA+TGG 0.350210 4_1:+7775677 Msa0533080:exon
AAGGAGTAATCCTTATTCAT+TGG 0.357129 4_1:-7775792 None:intergenic
TACATTAAGAAGTAAATTGC+AGG 0.375038 4_1:-7769154 None:intergenic
TAGAGATCGCATTGTTGGTT+TGG 0.383888 4_1:+7773512 Msa0533080:five_prime_UTR
AGGAGTAATCCTTATTCATT+GGG 0.384870 4_1:-7775791 None:intergenic
TCTGTCTCCGATGTTTGATA+TGG 0.389125 4_1:+7775731 Msa0533080:CDS
TTCAGCTGCACCAGCTCATA+TGG 0.389169 4_1:+7775665 Msa0533080:exon
TAATCCTCCGAGGCAACATC+TGG 0.412101 4_1:+7777405 Msa0533080:three_prime_UTR
TGTGGCAGCCACCCTTAGGA+TGG 0.429865 4_1:+7777355 Msa0533080:intron
GTGGCAGCCACCCTTAGGAT+GGG 0.435271 4_1:+7777356 Msa0533080:intron
TCATGATCCGAATGCTTTGT+TGG 0.439024 4_1:+7777498 Msa0533080:three_prime_UTR
GACTCATCTTGTGGGAAAGA+AGG 0.455718 4_1:-7777709 None:intergenic
GGATGTAGAGATCGCATTGT+TGG 0.458984 4_1:+7773507 Msa0533080:five_prime_UTR
CCAAGTAAGCTCCACATTTG+TGG 0.459503 4_1:-7769390 None:intergenic
GACTCCTTAGCCCCATCCTA+AGG 0.461884 4_1:-7777367 None:intergenic
TCTAGCTAATTTCCTTGCAA+TGG 0.465594 4_1:+7773486 Msa0533080:five_prime_UTR
TTTGGTAAGACTCATCTTGT+GGG 0.483650 4_1:-7777717 None:intergenic
TACTTGGGCATGAGTGGAAT+CGG 0.486669 4_1:+7769406 Msa0533080:five_prime_UTR
ATATCAAACAAAACTTCAGT+GGG 0.487095 4_1:+7773461 Msa0533080:five_prime_UTR
TGGCAGCCACCCTTAGGATG+GGG 0.493816 4_1:+7777357 Msa0533080:intron
ATATGAGCTGGTGCAGCTGA+AGG 0.500074 4_1:-7775663 None:intergenic
TAAAATCATCACCAAAATCA+AGG 0.506119 4_1:+7775623 Msa0533080:five_prime_UTR
TTGAACACCAACAAAGCATT+CGG 0.510692 4_1:-7777505 None:intergenic
CATCGGATCGCGAGGAACCC+AGG 0.521296 4_1:-7777452 None:intergenic
GAGATGGTGCGCAGGAACCT+TGG 0.524060 4_1:+7769331 Msa0533080:five_prime_UTR
ATTTGGTAAGACTCATCTTG+TGG 0.530265 4_1:-7777718 None:intergenic
TTTGTTGCTACAGTAGGAGA+TGG 0.531206 4_1:+7769315 Msa0533080:intron
ATCATCACCAAAATCAAGGA+AGG 0.531911 4_1:+7775627 Msa0533080:five_prime_UTR
AGCAATGCATGTAGCTTCAT+CGG 0.536854 4_1:-7777469 None:intergenic
GTCTCCGATGTTTGATATGG+TGG 0.541847 4_1:+7775734 Msa0533080:CDS
TACCTCGGATACCACTGATC+TGG 0.541909 4_1:-7775867 None:intergenic
CACAAATGTGGAGCTTACTT+GGG 0.543543 4_1:+7769391 Msa0533080:five_prime_UTR
CAATTCTTAGACTTGAACCA+TGG 0.544700 4_1:+7777525 Msa0533080:three_prime_UTR
TATGAAGATGAGAGGTATGA+AGG 0.546190 4_1:-7775837 None:intergenic
CCACCCTTAGGATGGGGCTA+AGG 0.546946 4_1:+7777363 Msa0533080:exon
GATGTTCAATTTGATGTCCA+TGG 0.559354 4_1:-7777542 None:intergenic
TATATCAAACAAAACTTCAG+TGG 0.563783 4_1:+7773460 Msa0533080:five_prime_UTR
ATAACAGCTTCCATATGAGC+TGG 0.571986 4_1:-7775675 None:intergenic
ATGACGTTCGAGGTGTGCTA+TGG 0.574715 4_1:+7769365 Msa0533080:five_prime_UTR
ATCGGATCGCGAGGAACCCA+GGG 0.575581 4_1:-7777451 None:intergenic
CGTCATTGTGTTCTCCGCCA+AGG 0.580690 4_1:-7769348 None:intergenic
GGATACCACTGATCTGGTGA+GGG 0.584225 4_1:-7775861 None:intergenic
TATGAGCTGGTGCAGCTGAA+GGG 0.584297 4_1:-7775662 None:intergenic
TAGACTTCCAGATGTTGCCT+CGG 0.585595 4_1:-7777412 None:intergenic
ACTCCTTAGCCCCATCCTAA+GGG 0.585937 4_1:-7777366 None:intergenic
GGAGAACACAATGACGTTCG+AGG 0.589815 4_1:+7769355 Msa0533080:five_prime_UTR
ATGGTGCGCAGGAACCTTGG+CGG 0.596176 4_1:+7769334 Msa0533080:five_prime_UTR
GGAGACAGAAATATCTTCCA+TGG 0.596472 4_1:-7775717 None:intergenic
ATTCTTAACTACATGATCAA+AGG 0.599025 4_1:-7777628 None:intergenic
CGGATACCACTGATCTGGTG+AGG 0.600056 4_1:-7775862 None:intergenic
AGGATTACTCCTTTGATCTG+AGG 0.600461 4_1:+7775802 Msa0533080:CDS
GGGGAGGCAACAAGTCTCCA+TGG 0.603405 4_1:-7775771 None:intergenic
TACAGTAGGAGATGGTGCGC+AGG 0.603489 4_1:+7769323 Msa0533080:intron
GTGAGGGGTATGAAGATGAG+AGG 0.616209 4_1:-7775845 None:intergenic
GGAGCTTACTTGGGCATGAG+TGG 0.617303 4_1:+7769400 Msa0533080:five_prime_UTR
CGATCTCTACATCCATTGCA+AGG 0.617669 4_1:-7773498 None:intergenic
AACAAAGCATTCGGATCATG+AGG 0.620102 4_1:-7777496 None:intergenic
ACTTCCAGATGTTGCCTCGG+AGG 0.622592 4_1:-7777409 None:intergenic
TCATCACCAAAATCAAGGAA+GGG 0.624569 4_1:+7775628 Msa0533080:five_prime_UTR
CCTTAGCCCCATCCTAAGGG+TGG 0.624851 4_1:-7777363 None:intergenic
GTAATCCTTATTCATTGGGG+AGG 0.626219 4_1:-7775787 None:intergenic
TACGAGTTAGCTAACATACA+AGG 0.628998 4_1:-7777592 None:intergenic
TGTAGCTTCATCGGATCGCG+AGG 0.633925 4_1:-7777460 None:intergenic
TAGCTAACATACAAGGCCAA+AGG 0.635638 4_1:-7777585 None:intergenic
CACCAGATCAGTGGTATCCG+AGG 0.640182 4_1:+7775865 Msa0533080:CDS
TGACGAGTACCTCAGATCAA+AGG 0.642736 4_1:-7775811 None:intergenic
GTGCTATGGCTCCACAAATG+TGG 0.642932 4_1:+7769379 Msa0533080:five_prime_UTR
ATTTGAATGAATGAATGTAG+AGG 0.643557 4_1:-7772633 None:intergenic
ACATTAAGAAGTAAATTGCA+GGG 0.645380 4_1:-7769153 None:intergenic
GAAGCAGTTGCTTACAAAGG+CGG 0.648665 4_1:+7773426 Msa0533080:five_prime_UTR
TCATATGGAAGCTGTTATGG+AGG 0.648929 4_1:+7775680 Msa0533080:exon
GAAGATGAGAGGTATGAAGG+TGG 0.660006 4_1:-7775834 None:intergenic
CATACCCCTCACCAGATCAG+TGG 0.663428 4_1:+7775856 Msa0533080:CDS
TGTACCACCATATCAAACAT+CGG 0.670313 4_1:-7775738 None:intergenic
TGGTACAAACATCGTCACCA+TGG 0.678551 4_1:+7775754 Msa0533080:CDS
GATGAAGCAGTTGCTTACAA+AGG 0.692179 4_1:+7773423 Msa0533080:five_prime_UTR
AGGCACATACATCGCCACCA+TGG 0.693204 4_1:+7775700 Msa0533080:CDS
GGAGTAATCCTTATTCATTG+GGG 0.697509 4_1:-7775790 None:intergenic
GATACCACTGATCTGGTGAG+GGG 0.708796 4_1:-7775860 None:intergenic
GACAGAAATATCTTCCATGG+TGG 0.709754 4_1:-7775714 None:intergenic
TATCAAACAAAACTTCAGTG+GGG 0.730500 4_1:+7773462 Msa0533080:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - chr4_1:7772964-7772983 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr4_1:7772965-7772984 None:intergenic 0.0%
!!! TTTTTTTAAAATTTATAATT+TGG + chr4_1:7773066-7773085 Msa0533080:intron 0.0%
!! AATAGAATAAAAAAATAGAT+AGG - chr4_1:7769506-7769525 None:intergenic 10.0%
!! AAATGAATTTAATATCTATA+AGG + chr4_1:7769936-7769955 Msa0533080:intron 10.0%
!! TTTATTTAGTTAAAAATGTT+AGG - chr4_1:7770277-7770296 None:intergenic 10.0%
!! TAAAACTAAAATGAAAAATT+TGG - chr4_1:7777738-7777757 None:intergenic 10.0%
!!! ATTTTTCATTTTAGTTTTAA+CGG + chr4_1:7777739-7777758 Msa0533080:three_prime_UTR 10.0%
!!! TTTTTATTCTATTCATTACT+TGG + chr4_1:7769513-7769532 Msa0533080:intron 15.0%
!!! TTTTATTCTATTCATTACTT+GGG + chr4_1:7769514-7769533 Msa0533080:intron 15.0%
!! TTGTTTGTAAAGTTATAATT+TGG + chr4_1:7769886-7769905 Msa0533080:intron 15.0%
!! TAAATATTTCATAAACATAG+TGG + chr4_1:7772265-7772284 Msa0533080:intron 15.0%
!! TTGTAAAAAAAATTCCATAA+TGG + chr4_1:7772410-7772429 Msa0533080:intron 15.0%
!! ATATATAACCCTATATATAT+GGG + chr4_1:7772755-7772774 Msa0533080:intron 15.0%
!! ATAATGAAAATGAATTAAGT+GGG + chr4_1:7773154-7773173 Msa0533080:intron 15.0%
!! AAAAATGAAAAACAGTTAAA+GGG - chr4_1:7773229-7773248 None:intergenic 15.0%
!! TAAAAATGAAAAACAGTTAA+AGG - chr4_1:7773230-7773249 None:intergenic 15.0%
!! TTCATATTCTATAAATCATT+TGG - chr4_1:7773316-7773335 None:intergenic 15.0%
!!! TTTTTTTTTTTAAAGGATGA+AGG + chr4_1:7773401-7773420 Msa0533080:intron 15.0%
!! AATACATTGTAAAATTATTG+TGG + chr4_1:7774310-7774329 Msa0533080:intron 15.0%
!! GCTTTATAAAAAAAAAATCT+CGG - chr4_1:7774375-7774394 None:intergenic 15.0%
!!! TTGTTTGATAATATAAACAT+AGG + chr4_1:7774631-7774650 Msa0533080:intron 15.0%
!! AAGTTAAAACTATATAATAG+AGG - chr4_1:7774783-7774802 None:intergenic 15.0%
!!! ATAAATTAACATTGGTAATT+TGG + chr4_1:7775444-7775463 Msa0533080:intron 15.0%
!!! TAAATTAACATTGGTAATTT+GGG + chr4_1:7775445-7775464 Msa0533080:intron 15.0%
!!! TATTACTTTTAGTATTTCAT+AGG + chr4_1:7776239-7776258 Msa0533080:intron 15.0%
!! AAACTAATAAAATAAAGAGA+GGG - chr4_1:7776526-7776545 None:intergenic 15.0%
!!! AGGTTATTTTTTTTTTTATC+AGG + chr4_1:7776683-7776702 Msa0533080:intron 15.0%
!!! TTATTTTTTTTTTTATCAGG+AGG + chr4_1:7776686-7776705 Msa0533080:intron 15.0%
!!! TATTTTTTTTTTTATCAGGA+GGG + chr4_1:7776687-7776706 Msa0533080:intron 15.0%
!! ATTAGAATCCTATATATTAA+GGG - chr4_1:7777051-7777070 None:intergenic 15.0%
!! AATTAGAATCCTATATATTA+AGG - chr4_1:7777052-7777071 None:intergenic 15.0%
!!! TGTATTTTGTCAAGAAATTA+AGG + chr4_1:7769173-7769192 Msa0533080:five_prime_UTR 20.0%
!! TTTATTCTATTCATTACTTG+GGG + chr4_1:7769515-7769534 Msa0533080:intron 20.0%
!!! TTTTGATGAGAGATAATTAT+TGG + chr4_1:7769636-7769655 Msa0533080:intron 20.0%
!! TCTTAGTAATTCCAAAAAAT+AGG - chr4_1:7769747-7769766 None:intergenic 20.0%
!!! ACAACTAAAATGTACTTTTT+AGG - chr4_1:7769776-7769795 None:intergenic 20.0%
!! ATTATTTACACTTGAATAGA+TGG + chr4_1:7770358-7770377 Msa0533080:intron 20.0%
!!! TACTTTTTGATATTTTCAGA+CGG - chr4_1:7770819-7770838 None:intergenic 20.0%
!!! TTGATTTTAACAAGTGAATA+AGG + chr4_1:7772183-7772202 Msa0533080:intron 20.0%
!!! TATTTATATGAGACTTTTGT+GGG - chr4_1:7772234-7772253 None:intergenic 20.0%
!!! TTATTTATATGAGACTTTTG+TGG - chr4_1:7772235-7772254 None:intergenic 20.0%
!!! AAAAAAAATTCCATAATGGA+TGG + chr4_1:7772414-7772433 Msa0533080:intron 20.0%
!! GAAAATCAAAAGCTAAAAAA+AGG - chr4_1:7772583-7772602 None:intergenic 20.0%
!!! ATTCAAATTTTAGCTAAATC+AGG + chr4_1:7772648-7772667 Msa0533080:five_prime_UTR 20.0%
!! CATATTAAAAAGAGTAGTAA+TGG - chr4_1:7772695-7772714 None:intergenic 20.0%
!! GATATATAACCCTATATATA+TGG + chr4_1:7772754-7772773 Msa0533080:intron 20.0%
!! TAACAAAACCCATATATATA+GGG - chr4_1:7772766-7772785 None:intergenic 20.0%
!! CATAATGAAAATGAATTAAG+TGG + chr4_1:7773153-7773172 Msa0533080:intron 20.0%
!! TAATGAAAATGAATTAAGTG+GGG + chr4_1:7773155-7773174 Msa0533080:intron 20.0%
!!! GAAGTTTTGTTTGATATAAT+GGG - chr4_1:7773458-7773477 None:intergenic 20.0%
!!! TGAAGTTTTGTTTGATATAA+TGG - chr4_1:7773459-7773478 None:intergenic 20.0%
!! ACAATGTTGAAAAATCTATT+AGG + chr4_1:7773556-7773575 Msa0533080:five_prime_UTR 20.0%
!! ACGTGAATAAATATGTATAT+GGG + chr4_1:7773627-7773646 Msa0533080:intron 20.0%
!! TATATATAGTAAGAAAGCTT+CGG - chr4_1:7773667-7773686 None:intergenic 20.0%
!! AGCTTTCTTACTATATATAA+AGG + chr4_1:7773668-7773687 Msa0533080:intron 20.0%
!! GCTTTCTTACTATATATAAA+GGG + chr4_1:7773669-7773688 Msa0533080:intron 20.0%
!! TATATATAGTAAGAAAGCTT+CGG - chr4_1:7773667-7773686 None:intergenic 20.0%
!! AGCTTTCTTACTATATATAA+AGG + chr4_1:7773668-7773687 Msa0533080:intron 20.0%
!! GCTTTCTTACTATATATAAA+GGG + chr4_1:7773669-7773688 Msa0533080:intron 20.0%
!!! TAATCTTTTTATCCCTTAAT+AGG + chr4_1:7773978-7773997 Msa0533080:intron 20.0%
!! TATTTCAATCTTCCTATTAA+GGG - chr4_1:7773993-7774012 None:intergenic 20.0%
!!! TATCTAACTAAGTATTTCTA+AGG - chr4_1:7774159-7774178 None:intergenic 20.0%
!!! TGATGGACTATTTAAATATT+AGG + chr4_1:7774238-7774257 Msa0533080:intron 20.0%
!!! TTTCTTTTTATTAGAACCTA+AGG + chr4_1:7774401-7774420 Msa0533080:intron 20.0%
!! AAAAAAAATATGTTCTTTGC+AGG - chr4_1:7774436-7774455 None:intergenic 20.0%
!!! AACATGTTATTTTTTTGTTC+AGG - chr4_1:7774487-7774506 None:intergenic 20.0%
!! GATAATATAAACATAGGTAA+TGG + chr4_1:7774637-7774656 Msa0533080:intron 20.0%
!!! TTTAACTTTAGTAGTTGAAA+AGG + chr4_1:7774681-7774700 Msa0533080:intron 20.0%
!!! ATTACTTTTATCTCTTTTCT+TGG + chr4_1:7774737-7774756 Msa0533080:intron 20.0%
!! CATTCAAAGAAAATTATGTA+TGG - chr4_1:7774900-7774919 None:intergenic 20.0%
!! GAACTATTACAAGAATATAA+AGG - chr4_1:7775106-7775125 None:intergenic 20.0%
!! TAGATATGTTTACTACATTT+GGG - chr4_1:7775195-7775214 None:intergenic 20.0%
!! ATAGATATGTTTACTACATT+TGG - chr4_1:7775196-7775215 None:intergenic 20.0%
!! CCAAATATTACATATTAAAG+CGG - chr4_1:7775418-7775437 None:intergenic 20.0%
!!! TTATTATTTGATTTTCAACC+AGG + chr4_1:7775554-7775573 Msa0533080:intron 20.0%
!!! TTTATTTTTAGTTGCACTTT+TGG + chr4_1:7776022-7776041 Msa0533080:intron 20.0%
!! GAAACTAATAAAATAAAGAG+AGG - chr4_1:7776527-7776546 None:intergenic 20.0%
!!! GCTTTTAATTTTCATTTCAA+TGG - chr4_1:7776594-7776613 None:intergenic 20.0%
!! CAAAATTTATATACACAAGA+TGG + chr4_1:7776933-7776952 Msa0533080:intron 20.0%
!! GTTTTTGTTAGTATATGAGA+AGG - chr4_1:7769080-7769099 None:intergenic 25.0%
! CTCATATACTAACAAAAACA+AGG + chr4_1:7769081-7769100 Msa0533080:five_prime_UTR 25.0%
! ACATTAAGAAGTAAATTGCA+GGG - chr4_1:7769156-7769175 None:intergenic 25.0%
! TACATTAAGAAGTAAATTGC+AGG - chr4_1:7769157-7769176 None:intergenic 25.0%
! ACAAAATGCAAATATAGACA+CGG - chr4_1:7769451-7769470 None:intergenic 25.0%
!!! GTGACTTTAGTGTATTTTAA+AGG + chr4_1:7769578-7769597 Msa0533080:intron 25.0%
!! ATGAGAGATAATTATTGGTT+AGG + chr4_1:7769641-7769660 Msa0533080:intron 25.0%
!!! CATGTTTTCATCCTATTTTT+TGG + chr4_1:7769733-7769752 Msa0533080:intron 25.0%
!!! AAGTACATTTTAGTTGTCAA+TGG + chr4_1:7769779-7769798 Msa0533080:intron 25.0%
! GTTTGTGTATTCAAAAGAAT+CGG + chr4_1:7769844-7769863 Msa0533080:intron 25.0%
!!! AGAATCGGATGTAATTTTTT+TGG + chr4_1:7769859-7769878 Msa0533080:intron 25.0%
!!! CCATTTGTTTTTGACATTTT+TGG - chr4_1:7770535-7770554 None:intergenic 25.0%
! CCAAAAATGTCAAAAACAAA+TGG + chr4_1:7770532-7770551 Msa0533080:intron 25.0%
!! ACTTTTTGATATTTTCAGAC+GGG - chr4_1:7770818-7770837 None:intergenic 25.0%
!!! TATCAAAAAGTACTTAAAGC+CGG + chr4_1:7770827-7770846 Msa0533080:intron 25.0%
! TCTTACGAATATTCAATTCA+AGG + chr4_1:7771721-7771740 Msa0533080:intron 25.0%
!!! TTAATTAATGTGTCGACTAT+AGG + chr4_1:7772126-7772145 Msa0533080:intron 25.0%
!! GGAAGCATATATTATGTATT+TGG + chr4_1:7772158-7772177 Msa0533080:intron 25.0%
!! ATTTATATGAGACTTTTGTG+GGG - chr4_1:7772233-7772252 None:intergenic 25.0%
!!! ATAATGGATGGAAGAAATTA+GGG + chr4_1:7772426-7772445 Msa0533080:intron 25.0%
! TTTGCTCTTTAGTACAAAAA+TGG - chr4_1:7772494-7772513 None:intergenic 25.0%
! ATTTGAATGAATGAATGTAG+AGG - chr4_1:7772636-7772655 None:intergenic 25.0%
!!! AATTTTAGCTAAATCAGGTA+AGG + chr4_1:7772653-7772672 Msa0533080:intron 25.0%
! GTAACAAAACCCATATATAT+AGG - chr4_1:7772767-7772786 None:intergenic 25.0%
! TATATCAAACAAAACTTCAG+TGG + chr4_1:7773460-7773479 Msa0533080:five_prime_UTR 25.0%
! ATATCAAACAAAACTTCAGT+GGG + chr4_1:7773461-7773480 Msa0533080:five_prime_UTR 25.0%
! GACGTGAATAAATATGTATA+TGG + chr4_1:7773626-7773645 Msa0533080:intron 25.0%
! CTATTTCAATCTTCCTATTA+AGG - chr4_1:7773994-7774013 None:intergenic 25.0%
!! ACACTAACTAAGTATTTCTA+AGG - chr4_1:7774187-7774206 None:intergenic 25.0%
! ATTTAAATAGTCCATCAACA+CGG - chr4_1:7774235-7774254 None:intergenic 25.0%
! TGAACTGATATGAACAAATT+AGG + chr4_1:7774530-7774549 Msa0533080:intron 25.0%
! GAACTGATATGAACAAATTA+GGG + chr4_1:7774531-7774550 Msa0533080:intron 25.0%
! ATAACTTTACTTACCAATCA+AGG - chr4_1:7775019-7775038 None:intergenic 25.0%
! AGATATGTTTACTACATTTG+GGG - chr4_1:7775194-7775213 None:intergenic 25.0%
! TTTGTATCAATGTCAAATGA+TGG - chr4_1:7775266-7775285 None:intergenic 25.0%
! CATTTGACATTGATACAAAA+CGG + chr4_1:7775267-7775286 Msa0533080:intron 25.0%
!!! AGTTCTGGAATTTAATAGAT+TGG + chr4_1:7775327-7775346 Msa0533080:intron 25.0%
!! AAAGCATTCATGTAATTTGT+TGG + chr4_1:7775386-7775405 Msa0533080:intron 25.0%
! CCGCTTTAATATGTAATATT+TGG + chr4_1:7775415-7775434 Msa0533080:intron 25.0%
! TAAAATCATCACCAAAATCA+AGG + chr4_1:7775623-7775642 Msa0533080:five_prime_UTR 25.0%
! TATAAGGACATAAATTACCT+CGG - chr4_1:7775885-7775904 None:intergenic 25.0%
! CCATATATTAACCTTTCAAA+GGG - chr4_1:7776302-7776321 None:intergenic 25.0%
! ACCATATATTAACCTTTCAA+AGG - chr4_1:7776303-7776322 None:intergenic 25.0%
!! AGCTTTTTAAATATGATGAC+CGG - chr4_1:7776362-7776381 None:intergenic 25.0%
!! TTTTCGTTCATCAATTGAAA+TGG + chr4_1:7776453-7776472 Msa0533080:intron 25.0%
!!! TTAAGTTGAGATTTTCGAAA+GGG - chr4_1:7776628-7776647 None:intergenic 25.0%
!!! TTTAAGTTGAGATTTTCGAA+AGG - chr4_1:7776629-7776648 None:intergenic 25.0%
!!! TAAGATTATTCTTTGAAACG+AGG + chr4_1:7776739-7776758 Msa0533080:intron 25.0%
!!! AAGATTATTCTTTGAAACGA+GGG + chr4_1:7776740-7776759 Msa0533080:intron 25.0%
! AACAAATAGATCTGAATTTC+TGG - chr4_1:7776795-7776814 None:intergenic 25.0%
! ATCTAGTCTAGTTACATAAA+TGG - chr4_1:7776831-7776850 None:intergenic 25.0%
! AGCTGTATATAAATTGGTTA+GGG - chr4_1:7776856-7776875 None:intergenic 25.0%
! TTAAGCAGCTGTATATAAAT+TGG - chr4_1:7776862-7776881 None:intergenic 25.0%
!!! TAGTCTAACATATGTTTTTG+TGG + chr4_1:7777337-7777356 Msa0533080:intron 25.0%
! ATTCTTAACTACATGATCAA+AGG - chr4_1:7777631-7777650 None:intergenic 25.0%
CTCTATATAGACATGTTACA+TGG - chr4_1:7769234-7769253 None:intergenic 30.0%
TCATGAATGAAGGATTTGTA+TGG + chr4_1:7769265-7769284 Msa0533080:intron 30.0%
! ATGTATTTTGTTGCTACAGT+AGG + chr4_1:7769309-7769328 Msa0533080:intron 30.0%
ATGAAAACATGCAAGTAATG+GGG - chr4_1:7769724-7769743 None:intergenic 30.0%
GATGAAAACATGCAAGTAAT+GGG - chr4_1:7769725-7769744 None:intergenic 30.0%
TCTATAAGGCTTAAAGAACA+TGG + chr4_1:7769950-7769969 Msa0533080:intron 30.0%
! CATGAAAATACGTTTGAGTT+AGG + chr4_1:7770048-7770067 Msa0533080:intron 30.0%
! CTCATTATGACTTTTGTACA+AGG - chr4_1:7770300-7770319 None:intergenic 30.0%
CTTGTACAAAAGTCATAATG+AGG + chr4_1:7770298-7770317 Msa0533080:intron 30.0%
!!! ATTGGTTTTGCAATCCAAAA+AGG - chr4_1:7770412-7770431 None:intergenic 30.0%
!! ATCAAAAAGTACTTAAAGCC+GGG + chr4_1:7770828-7770847 Msa0533080:intron 30.0%
GAATCATAAGACGATATCTA+AGG + chr4_1:7770940-7770959 Msa0533080:intron 30.0%
! ACAAGACAAAAGGCAATTTT+TGG - chr4_1:7771059-7771078 None:intergenic 30.0%
! AAAAATTGCCTTTTGTCTTG+TGG + chr4_1:7771058-7771077 Msa0533080:intron 30.0%
!! TCTTTTTAGTAAAAGTGGTC+AGG - chr4_1:7771108-7771127 None:intergenic 30.0%
!! AGTGCTCTTTTTAGTAAAAG+TGG - chr4_1:7771113-7771132 None:intergenic 30.0%
!! ATCATATTTTGAGAGACAGT+GGG - chr4_1:7771217-7771236 None:intergenic 30.0%
ATGATCTTCTTCTTCAGTTA+CGG - chr4_1:7771532-7771551 None:intergenic 30.0%
!!! GAGATAAAGGTTTTATTGAG+GGG - chr4_1:7771591-7771610 None:intergenic 30.0%
!!! CGAGATAAAGGTTTTATTGA+GGG - chr4_1:7771592-7771611 None:intergenic 30.0%
CCTCAATAAAACCTTTATCT+CGG + chr4_1:7771590-7771609 Msa0533080:intron 30.0%
!! TAAAGCTTTAGACATCATTC+GGG - chr4_1:7771766-7771785 None:intergenic 30.0%
!! CTAAAGCTTTAGACATCATT+CGG - chr4_1:7771767-7771786 None:intergenic 30.0%
TCTCTAATCTGATGAATAAG+AGG + chr4_1:7771858-7771877 Msa0533080:intron 30.0%
CTCTAATCTGATGAATAAGA+GGG + chr4_1:7771859-7771878 Msa0533080:intron 30.0%
! TTATGGGTTGAGTTTCTTTA+TGG - chr4_1:7771987-7772006 None:intergenic 30.0%
TCAACCCATAAAGAAATAGA+TGG + chr4_1:7771996-7772015 Msa0533080:intron 30.0%
CAACCCATAAAGAAATAGAT+GGG + chr4_1:7771997-7772016 Msa0533080:intron 30.0%
! ATGCCCATCTATTTCTTTAT+GGG - chr4_1:7772003-7772022 None:intergenic 30.0%
!! TTTTTCGAATGCTTTCAACT+TGG - chr4_1:7772063-7772082 None:intergenic 30.0%
CATTAATTAAACTTGCGACA+TGG - chr4_1:7772116-7772135 None:intergenic 30.0%
GTCGACTATAGGTAAATAAA+AGG + chr4_1:7772137-7772156 Msa0533080:intron 30.0%
AGTGAATAAGGACGTTAAAA+AGG + chr4_1:7772195-7772214 Msa0533080:intron 30.0%
!! TGTGTTTTCTAGCAACAAAA+AGG + chr4_1:7772320-7772339 Msa0533080:intron 30.0%
!! GTGTTTTCTAGCAACAAAAA+GGG + chr4_1:7772321-7772340 Msa0533080:intron 30.0%
!! TGTTTTCTAGCAACAAAAAG+GGG + chr4_1:7772322-7772341 Msa0533080:intron 30.0%
CTAATTTCTTCCATCCATTA+TGG - chr4_1:7772427-7772446 None:intergenic 30.0%
!! CATAATGGATGGAAGAAATT+AGG + chr4_1:7772425-7772444 Msa0533080:intron 30.0%
TCTTTAGTACAAAAATGGCT+GGG - chr4_1:7772489-7772508 None:intergenic 30.0%
AAAGAGCAAAAATGACACTT+TGG + chr4_1:7772504-7772523 Msa0533080:intron 30.0%
AGCTAAAAAAAGGATGTGAA+TGG - chr4_1:7772573-7772592 None:intergenic 30.0%
TTTCTTTCTGTATCAATGCT+AGG + chr4_1:7772732-7772751 Msa0533080:intron 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr4_1:7772808-7772827 Msa0533080:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr4_1:7772826-7772845 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr4_1:7772868-7772887 Msa0533080:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr4_1:7772874-7772893 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG + chr4_1:7772923-7772942 Msa0533080:intron 30.0%
! TCTAGAATCGTCTATCTATA+AGG + chr4_1:7773130-7773149 Msa0533080:intron 30.0%
!! GATTTGATTTCGTTTTCGTT+TGG + chr4_1:7773202-7773221 Msa0533080:intron 30.0%
TATCAAACAAAACTTCAGTG+GGG + chr4_1:7773462-7773481 Msa0533080:five_prime_UTR 30.0%
!! TTTTTCAACATTGTTGTCGT+GGG - chr4_1:7773550-7773569 None:intergenic 30.0%
!! ATTTTTCAACATTGTTGTCG+TGG - chr4_1:7773551-7773570 None:intergenic 30.0%
GTCGCTTGATAAAAAAACAA+GGG - chr4_1:7773609-7773628 None:intergenic 30.0%
GCTACGTACTTAAATATCTA+TGG - chr4_1:7773867-7773886 None:intergenic 30.0%
! GGGATTAGTAATATTTGTTG+AGG + chr4_1:7773899-7773918 Msa0533080:intron 30.0%
TATCCCAAAAATCAACTAAG+AGG - chr4_1:7773957-7773976 None:intergenic 30.0%
!!! TTGCAGGTTTTTTTTTCCTT+AGG - chr4_1:7774420-7774439 None:intergenic 30.0%
TATAGAACTGACATGAATGT+AGG + chr4_1:7774920-7774939 Msa0533080:intron 30.0%
ATATAAAGGACACACCAATA+AGG - chr4_1:7775092-7775111 None:intergenic 30.0%
! TTTACTATGGTTCTATATGC+CGG - chr4_1:7775167-7775186 None:intergenic 30.0%
ATATCTATCTAGAAGAAGCA+CGG + chr4_1:7775208-7775227 Msa0533080:intron 30.0%
!!! TAGTACATTGCTTTTAGTTC+TGG + chr4_1:7775312-7775331 Msa0533080:intron 30.0%
GGCACATGATAAATTAACAT+TGG + chr4_1:7775436-7775455 Msa0533080:intron 30.0%
AGGAGTAATCCTTATTCATT+GGG - chr4_1:7775794-7775813 None:intergenic 30.0%
AAGGAGTAATCCTTATTCAT+TGG - chr4_1:7775795-7775814 None:intergenic 30.0%
CAATGCCATAAAAAATGGTA+AGG - chr4_1:7775918-7775937 None:intergenic 30.0%
CTCAGATTCAATAGTTGTAA+GGG - chr4_1:7776203-7776222 None:intergenic 30.0%
AAGGGCTATTTGCATTAAAA+GGG - chr4_1:7776284-7776303 None:intergenic 30.0%
AAAGGGCTATTTGCATTAAA+AGG - chr4_1:7776285-7776304 None:intergenic 30.0%
! CCCTTTGAAAGGTTAATATA+TGG + chr4_1:7776299-7776318 Msa0533080:intron 30.0%
ACTTTCACTTATTGTATGCA+AGG + chr4_1:7776397-7776416 Msa0533080:intron 30.0%
CTTTCACTTATTGTATGCAA+GGG + chr4_1:7776398-7776417 Msa0533080:intron 30.0%
TCATCAATTGAAATGGTTCA+TGG + chr4_1:7776460-7776479 Msa0533080:intron 30.0%
AAGAATTGTAAATGGAAACG+AGG - chr4_1:7776568-7776587 None:intergenic 30.0%
AATGGTGCAAGAATTGTAAA+TGG - chr4_1:7776576-7776595 None:intergenic 30.0%
!! TAAGTTGAGATTTTCGAAAG+GGG - chr4_1:7776627-7776646 None:intergenic 30.0%
! GTTTTCTCCATTATCAACAA+CGG - chr4_1:7776718-7776737 None:intergenic 30.0%
CAGCTGTATATAAATTGGTT+AGG - chr4_1:7776857-7776876 None:intergenic 30.0%
! TATACAGCTGCTTAATTTTG+AGG + chr4_1:7776867-7776886 Msa0533080:intron 30.0%
! ATACAGCTGCTTAATTTTGA+GGG + chr4_1:7776868-7776887 Msa0533080:intron 30.0%
TATATACACAAGATGGAAAC+CGG + chr4_1:7776940-7776959 Msa0533080:intron 30.0%
ACTAAATTAAGGGCTGTAAA+GGG - chr4_1:7776982-7777001 None:intergenic 30.0%
TACTAAATTAAGGGCTGTAA+AGG - chr4_1:7776983-7777002 None:intergenic 30.0%
TTACAGCCCTTAATTTAGTA+AGG + chr4_1:7776983-7777002 Msa0533080:intron 30.0%
GGTGAACCTTACTAAATTAA+GGG - chr4_1:7776992-7777011 None:intergenic 30.0%
AGGTGAACCTTACTAAATTA+AGG - chr4_1:7776993-7777012 None:intergenic 30.0%
AATTTAGTAAGGTTCACCTA+TGG + chr4_1:7776994-7777013 Msa0533080:intron 30.0%
GATATGGACCTCAATTTAAA+AGG - chr4_1:7777021-7777040 None:intergenic 30.0%
TTTAAATTGAGGTCCATATC+AGG + chr4_1:7777021-7777040 Msa0533080:intron 30.0%
TTAAATTGAGGTCCATATCA+GGG + chr4_1:7777022-7777041 Msa0533080:intron 30.0%
TTTGTATGATCATGCAAAGT+TGG + chr4_1:7777184-7777203 Msa0533080:intron 30.0%
TACATGTCCAGTTCAAATAA+TGG - chr4_1:7777239-7777258 None:intergenic 30.0%
ATAAAAAAGATCTTGTACCC+TGG + chr4_1:7777434-7777453 Msa0533080:three_prime_UTR 30.0%
TAAAAAAGATCTTGTACCCT+GGG + chr4_1:7777435-7777454 Msa0533080:three_prime_UTR 30.0%
! TTTTGTATGTTAGCTACCTT+TGG + chr4_1:7777569-7777588 Msa0533080:three_prime_UTR 30.0%
GAAAAAAGGAAACTCAAGAT+GGG - chr4_1:7777690-7777709 None:intergenic 30.0%
AATGAAGGATTTGTATGGTC+TGG + chr4_1:7769270-7769289 Msa0533080:intron 35.0%
! CTTGCTCTACTTTCTTTTCT+TGG + chr4_1:7769477-7769496 Msa0533080:intron 35.0%
ATTCTATTCATTACTTGGGG+AGG + chr4_1:7769518-7769537 Msa0533080:intron 35.0%
TTCTATTCATTACTTGGGGA+GGG + chr4_1:7769519-7769538 Msa0533080:intron 35.0%
GGATGAAAACATGCAAGTAA+TGG - chr4_1:7769726-7769745 None:intergenic 35.0%
TTTAGTTGTCAATGGTCCTA+AGG + chr4_1:7769787-7769806 Msa0533080:intron 35.0%
!! AATGGTCCTAAGGTTACTTT+TGG + chr4_1:7769797-7769816 Msa0533080:intron 35.0%
!! TGTCGCTTAAGTTTCTTTTG+TGG + chr4_1:7770244-7770263 Msa0533080:intron 35.0%
ACACTTGAATAGATGGCAAA+CGG + chr4_1:7770365-7770384 Msa0533080:intron 35.0%
CCTTCTACATAGTGTTCAAA+AGG - chr4_1:7770488-7770507 None:intergenic 35.0%
! CCTTTTGAACACTATGTAGA+AGG + chr4_1:7770485-7770504 Msa0533080:intron 35.0%
! TTTACTTGACGCAGCTTTTA+GGG + chr4_1:7770603-7770622 Msa0533080:intron 35.0%
ATGCTTATGTAGACTTGACT+GGG - chr4_1:7770681-7770700 None:intergenic 35.0%
TAGATAGAAGATCAACACTC+AGG - chr4_1:7770744-7770763 None:intergenic 35.0%
!! AGTGTTGATCTTCTATCTAG+TGG + chr4_1:7770745-7770764 Msa0533080:intron 35.0%
! GTGTTGATCTTCTATCTAGT+GGG + chr4_1:7770746-7770765 Msa0533080:intron 35.0%
! TTTTGATATTTTCAGACGGG+CGG - chr4_1:7770815-7770834 None:intergenic 35.0%
TGACATTACCACAAGACAAA+AGG - chr4_1:7771069-7771088 None:intergenic 35.0%
TAGTAAAAGTGGTCAGGATA+TGG - chr4_1:7771102-7771121 None:intergenic 35.0%
! TCCTAAAGCACAACATGTTT+TGG - chr4_1:7771138-7771157 None:intergenic 35.0%
! AAAACATGTTGTGCTTTAGG+AGG + chr4_1:7771137-7771156 Msa0533080:intron 35.0%
!! AAACATGTTGTGCTTTAGGA+GGG + chr4_1:7771138-7771157 Msa0533080:intron 35.0%
ATGGATTCAGATTATGTTGG+CGG - chr4_1:7771185-7771204 None:intergenic 35.0%
!! GATCATATTTTGAGAGACAG+TGG - chr4_1:7771218-7771237 None:intergenic 35.0%
CTTTACCTATTAGGTTTGGA+GGG - chr4_1:7771316-7771335 None:intergenic 35.0%
TCTTTACCTATTAGGTTTGG+AGG - chr4_1:7771317-7771336 None:intergenic 35.0%
GCTTCTTTACCTATTAGGTT+TGG - chr4_1:7771320-7771339 None:intergenic 35.0%
!! CCAAACTTTTCTTTGGCTTA+AGG - chr4_1:7771463-7771482 None:intergenic 35.0%
CCTTAAGCCAAAGAAAAGTT+TGG + chr4_1:7771460-7771479 Msa0533080:intron 35.0%
! GGTATTGCCAAACTTTTCTT+TGG - chr4_1:7771470-7771489 None:intergenic 35.0%
TGATCTTCTTCTTCAGTTAC+GGG - chr4_1:7771531-7771550 None:intergenic 35.0%
!!! TAAAGGTTTTATTGAGGGGT+TGG - chr4_1:7771587-7771606 None:intergenic 35.0%
!!! CCGAGATAAAGGTTTTATTG+AGG - chr4_1:7771593-7771612 None:intergenic 35.0%
! ATCTTTTGACCTTCATGTGA+TGG - chr4_1:7771696-7771715 None:intergenic 35.0%
AATACAAGAGCAAAAAGGAG+CGG + chr4_1:7771885-7771904 Msa0533080:intron 35.0%
ACATAATATGACCATCACCA+AGG + chr4_1:7771943-7771962 Msa0533080:intron 35.0%
! GATGCCCATCTATTTCTTTA+TGG - chr4_1:7772004-7772023 None:intergenic 35.0%
TGGTTACTTGACTATGCTTA+TGG - chr4_1:7772090-7772109 None:intergenic 35.0%
!! GAATGCTTTATTTGAGAAGG+TGG - chr4_1:7772294-7772313 None:intergenic 35.0%
!! AGGGAATGCTTTATTTGAGA+AGG - chr4_1:7772297-7772316 None:intergenic 35.0%
GTTGCTAGAAAACACAACAA+GGG - chr4_1:7772316-7772335 None:intergenic 35.0%
TGTTGCTAGAAAACACAACA+AGG - chr4_1:7772317-7772336 None:intergenic 35.0%
GAAGAAATTAGGGTAACTGT+TGG + chr4_1:7772436-7772455 Msa0533080:intron 35.0%
CTTTAGTACAAAAATGGCTG+GGG - chr4_1:7772488-7772507 None:intergenic 35.0%
CTCTTTAGTACAAAAATGGC+TGG - chr4_1:7772490-7772509 None:intergenic 35.0%
GGAGAAACAAGCAAAATGAA+TGG - chr4_1:7772552-7772571 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG - chr4_1:7772796-7772815 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - chr4_1:7772797-7772816 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - chr4_1:7772936-7772955 None:intergenic 35.0%
TCTAGCTAATTTCCTTGCAA+TGG + chr4_1:7773486-7773505 Msa0533080:five_prime_UTR 35.0%
CGTCGCTTGATAAAAAAACA+AGG - chr4_1:7773610-7773629 None:intergenic 35.0%
!! ACAGCCTCTTAGTTGATTTT+TGG + chr4_1:7773950-7773969 Msa0533080:intron 35.0%
!! CAGCCTCTTAGTTGATTTTT+GGG + chr4_1:7773951-7773970 Msa0533080:intron 35.0%
AGAATTAATGTCCGTGTTGA+TGG + chr4_1:7774221-7774240 Msa0533080:intron 35.0%
! GTTACTTCGAAGCATCAAAT+TGG + chr4_1:7774607-7774626 Msa0533080:intron 35.0%
! ATAGGTAATGGTGATTAGAG+TGG + chr4_1:7774649-7774668 Msa0533080:intron 35.0%
AACTGACATGAATGTAGGAT+TGG + chr4_1:7774925-7774944 Msa0533080:intron 35.0%
ATGCTATAACCAGAAGTCAT+CGG + chr4_1:7775058-7775077 Msa0533080:intron 35.0%
TTCTTGTAATAGTTCCCATG+TGG + chr4_1:7775111-7775130 Msa0533080:intron 35.0%
GAAAGGACAATCAATCTAAC+CGG + chr4_1:7775145-7775164 Msa0533080:intron 35.0%
CATTTGGGGAACATTTACTA+TGG - chr4_1:7775180-7775199 None:intergenic 35.0%
AATAGATTGGTACACTGTCA+TGG + chr4_1:7775340-7775359 Msa0533080:intron 35.0%
ATCATCACCAAAATCAAGGA+AGG + chr4_1:7775627-7775646 Msa0533080:five_prime_UTR 35.0%
TCATCACCAAAATCAAGGAA+GGG + chr4_1:7775628-7775647 Msa0533080:five_prime_UTR 35.0%
TGTACCACCATATCAAACAT+CGG - chr4_1:7775741-7775760 None:intergenic 35.0%
GGAGTAATCCTTATTCATTG+GGG - chr4_1:7775793-7775812 None:intergenic 35.0%
! TATGAAGATGAGAGGTATGA+AGG - chr4_1:7775840-7775859 None:intergenic 35.0%
ATAAAAAATGGTAAGGAGCG+GGG - chr4_1:7775911-7775930 None:intergenic 35.0%
CATAAAAAATGGTAAGGAGC+GGG - chr4_1:7775912-7775931 None:intergenic 35.0%
CCATAAAAAATGGTAAGGAG+CGG - chr4_1:7775913-7775932 None:intergenic 35.0%
CTGAGCAATGCCATAAAAAA+TGG - chr4_1:7775923-7775942 None:intergenic 35.0%
TGGCTTGACCATTGTATTTA+TGG + chr4_1:7776042-7776061 Msa0533080:intron 35.0%
CCTCAGATTCAATAGTTGTA+AGG - chr4_1:7776204-7776223 None:intergenic 35.0%
CCTTACAACTATTGAATCTG+AGG + chr4_1:7776201-7776220 Msa0533080:intron 35.0%
AATGCAAATAGCCCTTTGAA+AGG + chr4_1:7776288-7776307 Msa0533080:intron 35.0%
ATAAAGAGAGGGTTGTTCAT+GGG - chr4_1:7776515-7776534 None:intergenic 35.0%
AATAAAGAGAGGGTTGTTCA+TGG - chr4_1:7776516-7776535 None:intergenic 35.0%
ATAGTACTAGCACAAATACG+AGG + chr4_1:7776663-7776682 Msa0533080:intron 35.0%
CTGGACATTTCAAGAACTAT+AGG - chr4_1:7776776-7776795 None:intergenic 35.0%
!!! GTAAAGGGTACCAATTTTGT+GGG - chr4_1:7776967-7776986 None:intergenic 35.0%
!!! TGTAAAGGGTACCAATTTTG+TGG - chr4_1:7776968-7776987 None:intergenic 35.0%
CCTCAATTTAAAAGGACCAT+AGG - chr4_1:7777013-7777032 None:intergenic 35.0%
! CCTATGGTCCTTTTAAATTG+AGG + chr4_1:7777010-7777029 Msa0533080:intron 35.0%
TAAATTGAGGTCCATATCAG+GGG + chr4_1:7777023-7777042 Msa0533080:intron 35.0%
GTAAGGAGCAAGGAAATATA+AGG - chr4_1:7777217-7777236 None:intergenic 35.0%
TCAAATAATGGTAAGGAGCA+AGG - chr4_1:7777227-7777246 None:intergenic 35.0%
CTCCTTACCATTATTTGAAC+TGG + chr4_1:7777229-7777248 Msa0533080:intron 35.0%
GTCCAGTTCAAATAATGGTA+AGG - chr4_1:7777234-7777253 None:intergenic 35.0%
! TTATTCCTTTTAATCCTCCG+AGG + chr4_1:7777395-7777414 Msa0533080:three_prime_UTR 35.0%
! TTGAACACCAACAAAGCATT+CGG - chr4_1:7777508-7777527 None:intergenic 35.0%
CAATTCTTAGACTTGAACCA+TGG + chr4_1:7777525-7777544 Msa0533080:three_prime_UTR 35.0%
GATGTTCAATTTGATGTCCA+TGG - chr4_1:7777545-7777564 None:intergenic 35.0%
TACGAGTTAGCTAACATACA+AGG - chr4_1:7777595-7777614 None:intergenic 35.0%
GGAAAAAAGGAAACTCAAGA+TGG - chr4_1:7777691-7777710 None:intergenic 35.0%
TTGTGGGAAAGAAGGAAAAA+AGG - chr4_1:7777704-7777723 None:intergenic 35.0%
TTTGGTAAGACTCATCTTGT+GGG - chr4_1:7777720-7777739 None:intergenic 35.0%
ATTTGGTAAGACTCATCTTG+TGG - chr4_1:7777721-7777740 None:intergenic 35.0%
CTGCTATACTAAGCACACAA+TGG - chr4_1:7769211-7769230 None:intergenic 40.0%
CACACACACTTCATGAATGA+AGG + chr4_1:7769255-7769274 Msa0533080:intron 40.0%
TTTGTTGCTACAGTAGGAGA+TGG + chr4_1:7769315-7769334 Msa0533080:intron 40.0%
CACAAATGTGGAGCTTACTT+GGG + chr4_1:7769391-7769410 Msa0533080:five_prime_UTR 40.0%
CATGAGTGGAATCGGTAAAT+AGG + chr4_1:7769414-7769433 Msa0533080:five_prime_UTR 40.0%
TCTATTCATTACTTGGGGAG+GGG + chr4_1:7769520-7769539 Msa0533080:intron 40.0%
TAGGAGAGAGATAGAGACAA+AGG + chr4_1:7769660-7769679 Msa0533080:intron 40.0%
! AAACATGCAAGTAATGGGGT+GGG - chr4_1:7769720-7769739 None:intergenic 40.0%
! AAAACATGCAAGTAATGGGG+TGG - chr4_1:7769721-7769740 None:intergenic 40.0%
TCTCGACCAAAAGTAACCTT+AGG - chr4_1:7769806-7769825 None:intergenic 40.0%
TTGGTCGAGAAGAACATGAT+AGG + chr4_1:7769816-7769835 Msa0533080:intron 40.0%
AGGCTTAAAGAACATGGATC+AGG + chr4_1:7769956-7769975 Msa0533080:intron 40.0%
CTTAAAGAACATGGATCAGG+TGG + chr4_1:7769959-7769978 Msa0533080:intron 40.0%
! GCTTAAGTTTCTTTTGTGGC+AGG + chr4_1:7770248-7770267 Msa0533080:intron 40.0%
CACTTGAATAGATGGCAAAC+GGG + chr4_1:7770366-7770385 Msa0533080:intron 40.0%
AATGTTGTGTTCACGAGGAT+TGG - chr4_1:7770430-7770449 None:intergenic 40.0%
AACACAACATTCATGGACCT+AGG + chr4_1:7770439-7770458 Msa0533080:intron 40.0%
ATAGCAATGTCATGTCTCCT+AGG - chr4_1:7770459-7770478 None:intergenic 40.0%
!!! TTTTGGTTTCCTATCACCTG+AGG - chr4_1:7770518-7770537 None:intergenic 40.0%
AGAACACGCTTTCTCATGTT+TGG + chr4_1:7770576-7770595 Msa0533080:intron 40.0%
AAAAGCTGCGTCAAGTAAAG+TGG - chr4_1:7770602-7770621 None:intergenic 40.0%
! CTTTACTTGACGCAGCTTTT+AGG + chr4_1:7770602-7770621 Msa0533080:intron 40.0%
TGCTTATGTAGACTTGACTG+GGG - chr4_1:7770680-7770699 None:intergenic 40.0%
CATGCTTATGTAGACTTGAC+TGG - chr4_1:7770682-7770701 None:intergenic 40.0%
! TTTGATATTTTCAGACGGGC+GGG - chr4_1:7770814-7770833 None:intergenic 40.0%
ACCTCATCAATAGGAAACAG+TGG + chr4_1:7770918-7770937 Msa0533080:intron 40.0%
TCCACTGTTTCCTATTGATG+AGG - chr4_1:7770922-7770941 None:intergenic 40.0%
AGGATAGTACGATACTTCAC+TGG + chr4_1:7770960-7770979 Msa0533080:intron 40.0%
TGCTGATCTAACCCATCAAT+CGG + chr4_1:7770990-7771009 Msa0533080:intron 40.0%
! TTCTAGCTATCCCGATTGAT+GGG - chr4_1:7771004-7771023 None:intergenic 40.0%
GCCAAAACATGTTGTGCTTT+AGG + chr4_1:7771134-7771153 Msa0533080:intron 40.0%
GGCATGGATTCAGATTATGT+TGG - chr4_1:7771188-7771207 None:intergenic 40.0%
GGGTTTGTACTCAACATTAG+AGG - chr4_1:7771291-7771310 None:intergenic 40.0%
!! GGTTGGCTTCTTTACCTATT+AGG - chr4_1:7771325-7771344 None:intergenic 40.0%
AAGAAGCCAACCTCTATTGA+AGG + chr4_1:7771333-7771352 Msa0533080:intron 40.0%
TATTGAAGGTCCCCAAAGAA+AGG + chr4_1:7771347-7771366 Msa0533080:intron 40.0%
TGATAAAGAGTTGCGTGAAG+CGG - chr4_1:7771399-7771418 None:intergenic 40.0%
TGCTCATTACCATCACATGA+AGG + chr4_1:7771684-7771703 Msa0533080:intron 40.0%
TTCAATTCAAGGCCCAATTC+TGG + chr4_1:7771732-7771751 Msa0533080:intron 40.0%
TAGACATCATTCGGGTCTTT+GGG - chr4_1:7771758-7771777 None:intergenic 40.0%
TTAGACATCATTCGGGTCTT+TGG - chr4_1:7771759-7771778 None:intergenic 40.0%
!! TTGATGATGGGACTGTTGTA+GGG - chr4_1:7771806-7771825 None:intergenic 40.0%
! ATGCTTGGTACCTTGATGAT+GGG - chr4_1:7771818-7771837 None:intergenic 40.0%
GGTGCAATACAAGAGCAAAA+AGG + chr4_1:7771880-7771899 Msa0533080:intron 40.0%
GGTCATATTATGTCTGCTAC+TGG - chr4_1:7771936-7771955 None:intergenic 40.0%
GGTTGAGTTTCTTTATGGAC+AGG - chr4_1:7771982-7772001 None:intergenic 40.0%
TTTCAACTTGGTAGACAGGT+CGG - chr4_1:7772051-7772070 None:intergenic 40.0%
ATGCTTTCAACTTGGTAGAC+AGG - chr4_1:7772055-7772074 None:intergenic 40.0%
TTAAACTTGCGACATGGAGA+TGG - chr4_1:7772110-7772129 None:intergenic 40.0%
! TTTCTAGCAACAAAAAGGGG+TGG + chr4_1:7772325-7772344 Msa0533080:intron 40.0%
AAAAAGGGGTGGTTTAACGA+GGG + chr4_1:7772336-7772355 Msa0533080:intron 40.0%
AGGGAAAGAAACAGTGAAGT+GGG + chr4_1:7772355-7772374 Msa0533080:intron 40.0%
! TAGCTTTACGCAACTTGTGA+AGG + chr4_1:7772462-7772481 Msa0533080:intron 40.0%
GGAGCAAAATGTCTGTTTGA+GGG - chr4_1:7772531-7772550 None:intergenic 40.0%
TGGAGCAAAATGTCTGTTTG+AGG - chr4_1:7772532-7772551 None:intergenic 40.0%
ATGAATGTAGAGGAGCTGAA+AGG - chr4_1:7772626-7772645 None:intergenic 40.0%
! TTTTGTTACAAGCCACCCTT+TGG + chr4_1:7772778-7772797 Msa0533080:intron 40.0%
GATGAAGCAGTTGCTTACAA+AGG + chr4_1:7773423-7773442 Msa0533080:five_prime_UTR 40.0%
! TAGAGATCGCATTGTTGGTT+TGG + chr4_1:7773512-7773531 Msa0533080:five_prime_UTR 40.0%
TAAGTACGTAGCGTGTTAGT+TGG + chr4_1:7773875-7773894 Msa0533080:intron 40.0%
GCTCTAATGATCTTACCCAA+AGG - chr4_1:7774577-7774596 None:intergenic 40.0%
! TCTCTTTTCTTGGCATACGT+TGG + chr4_1:7774747-7774766 Msa0533080:intron 40.0%
CATCTGCAATCTTCCTTGAT+TGG + chr4_1:7775003-7775022 Msa0533080:intron 40.0%
CATCGGTAGACTAACCTTAT+TGG + chr4_1:7775075-7775094 Msa0533080:intron 40.0%
TTCTTGTGACAGAACCACAT+GGG - chr4_1:7775128-7775147 None:intergenic 40.0%
TTTCTTGTGACAGAACCACA+TGG - chr4_1:7775129-7775148 None:intergenic 40.0%
! ATGTGGTTCTGTCACAAGAA+AGG + chr4_1:7775128-7775147 Msa0533080:intron 40.0%
CTATCACATATACGACATCC+TGG - chr4_1:7775575-7775594 None:intergenic 40.0%
ATAACAGCTTCCATATGAGC+TGG - chr4_1:7775678-7775697 None:intergenic 40.0%
AGCTCATATGGAAGCTGTTA+TGG + chr4_1:7775677-7775696 Msa0533080:exon 40.0%
TCATATGGAAGCTGTTATGG+AGG + chr4_1:7775680-7775699 Msa0533080:exon 40.0%
GACAGAAATATCTTCCATGG+TGG - chr4_1:7775717-7775736 None:intergenic 40.0%
GGAGACAGAAATATCTTCCA+TGG - chr4_1:7775720-7775739 None:intergenic 40.0%
TCTGTCTCCGATGTTTGATA+TGG + chr4_1:7775731-7775750 Msa0533080:CDS 40.0%
GTAATCCTTATTCATTGGGG+AGG - chr4_1:7775790-7775809 None:intergenic 40.0%
AGGATTACTCCTTTGATCTG+AGG + chr4_1:7775802-7775821 Msa0533080:CDS 40.0%
!!! CCGCTCCTTACCATTTTTTA+TGG + chr4_1:7775910-7775929 Msa0533080:intron 40.0%
ATTGCTCAGTGCATTAGAAC+AGG + chr4_1:7775934-7775953 Msa0533080:intron 40.0%
GCATTAGAACAGGACATGTA+TGG + chr4_1:7775944-7775963 Msa0533080:intron 40.0%
!! CATGCTTTTTATGTAGCCGA+GGG + chr4_1:7776072-7776091 Msa0533080:intron 40.0%
!! ATGCTTTTTATGTAGCCGAG+GGG + chr4_1:7776073-7776092 Msa0533080:intron 40.0%
!! AATGAAGAGTACTGCTGATC+CGG - chr4_1:7776132-7776151 None:intergenic 40.0%
! GAGTATTGTTGATGCGATGA+CGG - chr4_1:7776158-7776177 None:intergenic 40.0%
CATACAAGAAGGTTCATTGG+TGG - chr4_1:7776328-7776347 None:intergenic 40.0%
GGTCATACAAGAAGGTTCAT+TGG - chr4_1:7776331-7776350 None:intergenic 40.0%
TTGTAGCAGGTCATACAAGA+AGG - chr4_1:7776339-7776358 None:intergenic 40.0%
CTAGTACTATCTGCAATGGT+AGG - chr4_1:7776653-7776672 None:intergenic 40.0%
TGTGCTAGTACTATCTGCAA+TGG - chr4_1:7776657-7776676 None:intergenic 40.0%
! GGAACAACCGTTGTTGATAA+TGG + chr4_1:7776708-7776727 Msa0533080:intron 40.0%
!! AGCTGCTTAATTTTGAGGGT+GGG + chr4_1:7776872-7776891 Msa0533080:intron 40.0%
TATTAAGGGATCCCCTGATA+TGG - chr4_1:7777037-7777056 None:intergenic 40.0%
CAGGGGATCCCTTAATATAT+AGG + chr4_1:7777040-7777059 Msa0533080:intron 40.0%
CAGCAGTCACGTTAAATCAT+TGG - chr4_1:7777129-7777148 None:intergenic 40.0%
AGCAATGCATGTAGCTTCAT+CGG - chr4_1:7777472-7777491 None:intergenic 40.0%
! AACAAAGCATTCGGATCATG+AGG - chr4_1:7777499-7777518 None:intergenic 40.0%
TCATGATCCGAATGCTTTGT+TGG + chr4_1:7777498-7777517 Msa0533080:three_prime_UTR 40.0%
TAGCTAACATACAAGGCCAA+AGG - chr4_1:7777588-7777607 None:intergenic 40.0%
CCAAGTAAGCTCCACATTTG+TGG - chr4_1:7769393-7769412 None:intergenic 45.0%
CCACAAATGTGGAGCTTACT+TGG + chr4_1:7769390-7769409 Msa0533080:five_prime_UTR 45.0%
TACTTGGGCATGAGTGGAAT+CGG + chr4_1:7769406-7769425 Msa0533080:five_prime_UTR 45.0%
!! TCTTTGGCTTCGGTGTCTTT+CGG - chr4_1:7769688-7769707 None:intergenic 45.0%
! AACATGCAAGTAATGGGGTG+GGG - chr4_1:7769719-7769738 None:intergenic 45.0%
AAAGAACATGGATCAGGTGG+TGG + chr4_1:7769962-7769981 Msa0533080:intron 45.0%
CCATGAATGTTGTGTTCACG+AGG - chr4_1:7770435-7770454 None:intergenic 45.0%
CCTCGTGAACACAACATTCA+TGG + chr4_1:7770432-7770451 Msa0533080:intron 45.0%
TGTAGAAGGTCAACAACCTC+AGG + chr4_1:7770499-7770518 Msa0533080:intron 45.0%
!!! TTTTAGGGCTGTCTGTCCTA+CGG + chr4_1:7770618-7770637 Msa0533080:intron 45.0%
CCACTAGTGGGATTAAGTGT+CGG - chr4_1:7770652-7770671 None:intergenic 45.0%
!! ATGGTGTACAGATGGGTTGA+TGG - chr4_1:7770709-7770728 None:intergenic 45.0%
GGACGTTATGGTGTACAGAT+GGG - chr4_1:7770716-7770735 None:intergenic 45.0%
! TTCTATCTAGTGGGTCAGTC+AGG + chr4_1:7770755-7770774 Msa0533080:intron 45.0%
! TTGATATTTTCAGACGGGCG+GGG - chr4_1:7770813-7770832 None:intergenic 45.0%
GTTCACTGTAAGGAACTTCC+CGG - chr4_1:7770849-7770868 None:intergenic 45.0%
GGGAAGTTCCTTACAGTGAA+CGG + chr4_1:7770848-7770867 Msa0533080:intron 45.0%
GCTGATCTAACCCATCAATC+GGG + chr4_1:7770991-7771010 Msa0533080:intron 45.0%
! CTTCTAGCTATCCCGATTGA+TGG - chr4_1:7771005-7771024 None:intergenic 45.0%
TTTGCAAGCAACACATGCTC+AGG - chr4_1:7771033-7771052 None:intergenic 45.0%
!! TTGAGAGACAGTGGGTTATG+TGG - chr4_1:7771209-7771228 None:intergenic 45.0%
! GTACGCTTTTGTGGCTTCTA+GGG - chr4_1:7771261-7771280 None:intergenic 45.0%
CCTATTAGGTTTGGAGGGTT+GGG - chr4_1:7771311-7771330 None:intergenic 45.0%
ACCTATTAGGTTTGGAGGGT+TGG - chr4_1:7771312-7771331 None:intergenic 45.0%
! TCTTTGGGGACCTTCAATAG+AGG - chr4_1:7771346-7771365 None:intergenic 45.0%
TTGGTGGAGGTCCTTTCTTT+GGG - chr4_1:7771361-7771380 None:intergenic 45.0%
! GATGTGTCAACCGATTCACA+TGG - chr4_1:7771441-7771460 None:intergenic 45.0%
CTTCTACTTCGATCGTGCAT+GGG - chr4_1:7771491-7771510 None:intergenic 45.0%
TCTTCTACTTCGATCGTGCA+TGG - chr4_1:7771492-7771511 None:intergenic 45.0%
AGTAGAAGAAGCTCACTCTG+AGG + chr4_1:7771503-7771522 Msa0533080:intron 45.0%
ATTGGGGTGAAATTGCTCAG+AGG - chr4_1:7771625-7771644 None:intergenic 45.0%
GAGCAATTTCACCCCAATGT+CGG + chr4_1:7771627-7771646 Msa0533080:intron 45.0%
! TGATGGTAATGAGCATCGTG+GGG - chr4_1:7771679-7771698 None:intergenic 45.0%
! GTGATGGTAATGAGCATCGT+GGG - chr4_1:7771680-7771699 None:intergenic 45.0%
! TGTGATGGTAATGAGCATCG+TGG - chr4_1:7771681-7771700 None:intergenic 45.0%
!! TGATGATGGGACTGTTGTAG+GGG - chr4_1:7771805-7771824 None:intergenic 45.0%
!! CTTGATGATGGGACTGTTGT+AGG - chr4_1:7771807-7771826 None:intergenic 45.0%
CTACAACAGTCCCATCATCA+AGG + chr4_1:7771805-7771824 Msa0533080:intron 45.0%
CATGCTTGGTACCTTGATGA+TGG - chr4_1:7771819-7771838 None:intergenic 45.0%
GCAAGCTTCTTCTTCATGCT+TGG - chr4_1:7771833-7771852 None:intergenic 45.0%
CAAAAAGGAGCGGTCCTAAT+GGG + chr4_1:7771895-7771914 Msa0533080:intron 45.0%
GCGAGATTATACCTTGGTGA+TGG - chr4_1:7771957-7771976 None:intergenic 45.0%
CAAAAAGGGGTGGTTTAACG+AGG + chr4_1:7772335-7772354 Msa0533080:intron 45.0%
GAGGGAAAGAAACAGTGAAG+TGG + chr4_1:7772354-7772373 Msa0533080:intron 45.0%
GGGAAAGAAACAGTGAAGTG+GGG + chr4_1:7772356-7772375 Msa0533080:intron 45.0%
GGAAAGAAACAGTGAAGTGG+GGG + chr4_1:7772357-7772376 Msa0533080:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr4_1:7772793-7772812 None:intergenic 45.0%
GAAGCAGTTGCTTACAAAGG+CGG + chr4_1:7773426-7773445 Msa0533080:five_prime_UTR 45.0%
CGATCTCTACATCCATTGCA+AGG - chr4_1:7773501-7773520 None:intergenic 45.0%
GGATGTAGAGATCGCATTGT+TGG + chr4_1:7773507-7773526 Msa0533080:five_prime_UTR 45.0%
TACGTAGCGTGTTAGTTGGA+GGG + chr4_1:7773879-7773898 Msa0533080:intron 45.0%
! GTTAGTCTACCGATGACTTC+TGG - chr4_1:7775070-7775089 None:intergenic 45.0%
TAGAGTCTAAGCAACTGGCT+AGG + chr4_1:7775231-7775250 Msa0533080:intron 45.0%
TGGTACACTGTCATGGAGAA+TGG + chr4_1:7775347-7775366 Msa0533080:intron 45.0%
GGTACACTGTCATGGAGAAT+GGG + chr4_1:7775348-7775367 Msa0533080:intron 45.0%
GTACACTGTCATGGAGAATG+GGG + chr4_1:7775349-7775368 Msa0533080:intron 45.0%
! GCATCACCCTTCCTTGATTT+TGG - chr4_1:7775637-7775656 None:intergenic 45.0%
GTCTCCGATGTTTGATATGG+TGG + chr4_1:7775734-7775753 Msa0533080:CDS 45.0%
TGGTACAAACATCGTCACCA+TGG + chr4_1:7775754-7775773 Msa0533080:CDS 45.0%
TGTTGCCTCCCCAATGAATA+AGG + chr4_1:7775782-7775801 Msa0533080:CDS 45.0%
TGACGAGTACCTCAGATCAA+AGG - chr4_1:7775814-7775833 None:intergenic 45.0%
! GAAGATGAGAGGTATGAAGG+TGG - chr4_1:7775837-7775856 None:intergenic 45.0%
GTAAGGAGCGGGGAAATATA+AGG - chr4_1:7775901-7775920 None:intergenic 45.0%
GGTGGCTGCCATAAATACAA+TGG - chr4_1:7776053-7776072 None:intergenic 45.0%
! CGGCTACATAAAAAGCATGG+TGG - chr4_1:7776071-7776090 None:intergenic 45.0%
CCTCGGCTACATAAAAAGCA+TGG - chr4_1:7776074-7776093 None:intergenic 45.0%
!! CCATGCTTTTTATGTAGCCG+AGG + chr4_1:7776071-7776090 Msa0533080:intron 45.0%
GAAGGTGAGTACTACTGATC+CGG - chr4_1:7776102-7776121 None:intergenic 45.0%
AGTTGTAAGGGCTCAAGAGA+CGG - chr4_1:7776191-7776210 None:intergenic 45.0%
CTTGTATGACCTGCTACAAC+CGG + chr4_1:7776340-7776359 Msa0533080:intron 45.0%
ATATGATGACCGGTTGTAGC+AGG - chr4_1:7776352-7776371 None:intergenic 45.0%
!! CAGCTGCTTAATTTTGAGGG+TGG + chr4_1:7776871-7776890 Msa0533080:intron 45.0%
TGTTGCCTCGGAGGATTAAA+AGG - chr4_1:7777403-7777422 None:intergenic 45.0%
TAGACTTCCAGATGTTGCCT+CGG - chr4_1:7777415-7777434 None:intergenic 45.0%
GACTCATCTTGTGGGAAAGA+AGG - chr4_1:7777712-7777731 None:intergenic 45.0%
!!! ATCTAAATTTTTTTTTTTAA+AGG + chr4_1:7773394-7773413 Msa0533080:intron 5.0%
!!! ATAAATATTAATAACAATTT+TGG - chr4_1:7774829-7774848 None:intergenic 5.0%
GGAGAACACAATGACGTTCG+AGG + chr4_1:7769355-7769374 Msa0533080:five_prime_UTR 50.0%
ATGACGTTCGAGGTGTGCTA+TGG + chr4_1:7769365-7769384 Msa0533080:five_prime_UTR 50.0%
GTGCTATGGCTCCACAAATG+TGG + chr4_1:7769379-7769398 Msa0533080:five_prime_UTR 50.0%
GGCTTCGGTGACTTTGTGTT+GGG + chr4_1:7769541-7769560 Msa0533080:intron 50.0%
GGTCAACAACCTCAGGTGAT+AGG + chr4_1:7770506-7770525 Msa0533080:intron 50.0%
GCTGTCTGTCCTACGGTAAA+AGG + chr4_1:7770625-7770644 Msa0533080:intron 50.0%
!! AGTGTCGGACCTTTTACCGT+AGG - chr4_1:7770637-7770656 None:intergenic 50.0%
CCGACACTTAATCCCACTAG+TGG + chr4_1:7770649-7770668 Msa0533080:intron 50.0%
ACTGGGGTTTCACCACTAGT+GGG - chr4_1:7770664-7770683 None:intergenic 50.0%
CGGACGTTATGGTGTACAGA+TGG - chr4_1:7770717-7770736 None:intergenic 50.0%
AAGATCAACACTCAGGCCTG+CGG - chr4_1:7770737-7770756 None:intergenic 50.0%
GGGGATATCAGTGAAGAAGG+AGG - chr4_1:7770794-7770813 None:intergenic 50.0%
!! CTTGCTCCCCAAAAGTATCC+AGG + chr4_1:7770871-7770890 Msa0533080:intron 50.0%
! AGGCGTGCCTGGATACTTTT+GGG - chr4_1:7770881-7770900 None:intergenic 50.0%
! AAGGCGTGCCTGGATACTTT+TGG - chr4_1:7770882-7770901 None:intergenic 50.0%
ACAGGGCACACCTCATCAAT+AGG + chr4_1:7770909-7770928 Msa0533080:intron 50.0%
!! AGACAGTGGGTTATGTGGCA+TGG - chr4_1:7771204-7771223 None:intergenic 50.0%
! CGTACGCTTTTGTGGCTTCT+AGG - chr4_1:7771262-7771281 None:intergenic 50.0%
! GGCTTCTTCGTACGCTTTTG+TGG - chr4_1:7771270-7771289 None:intergenic 50.0%
CCCAACCCTCCAAACCTAAT+AGG + chr4_1:7771308-7771327 Msa0533080:intron 50.0%
TGGGGACCTTCAATAGAGGT+TGG - chr4_1:7771342-7771361 None:intergenic 50.0%
TGGTGGAGGTCCTTTCTTTG+GGG - chr4_1:7771360-7771379 None:intergenic 50.0%
! GTTGGTGGAGGTCCTTTCTT+TGG - chr4_1:7771362-7771381 None:intergenic 50.0%
GTTGAGGACATTGTGGTTGG+TGG - chr4_1:7771377-7771396 None:intergenic 50.0%
TGAAGCGGTTGAGGACATTG+TGG - chr4_1:7771384-7771403 None:intergenic 50.0%
! TCAACCGATTCACATGGAGG+AGG - chr4_1:7771435-7771454 None:intergenic 50.0%
! GTGTCAACCGATTCACATGG+AGG - chr4_1:7771438-7771457 None:intergenic 50.0%
GGAGCTGTTAGCCGAGATAA+AGG - chr4_1:7771604-7771623 None:intergenic 50.0%
! ATGGTAATGAGCATCGTGGG+GGG - chr4_1:7771677-7771696 None:intergenic 50.0%
! GATGGTAATGAGCATCGTGG+GGG - chr4_1:7771678-7771697 None:intergenic 50.0%
TGTTGTAGGGGATTCAGAGG+AGG - chr4_1:7771793-7771812 None:intergenic 50.0%
GACTGTTGTAGGGGATTCAG+AGG - chr4_1:7771796-7771815 None:intergenic 50.0%
GCAAAAAGGAGCGGTCCTAA+TGG + chr4_1:7771894-7771913 Msa0533080:intron 50.0%
TCTGCTACTGGAGTGCAACA+AGG - chr4_1:7771924-7771943 None:intergenic 50.0%
CAGGCAGCGAGATTATACCT+TGG - chr4_1:7771963-7771982 None:intergenic 50.0%
AAGAAACAGTGAAGTGGGGG+AGG + chr4_1:7772360-7772379 Msa0533080:intron 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr4_1:7772781-7772800 Msa0533080:intron 50.0%
GTACGTAGCGTGTTAGTTGG+AGG + chr4_1:7773878-7773897 Msa0533080:intron 50.0%
CACGGTAGAGTCTAAGCAAC+TGG + chr4_1:7775226-7775245 Msa0533080:intron 50.0%
CTAAGCAACTGGCTAGGATG+CGG + chr4_1:7775237-7775256 Msa0533080:intron 50.0%
TATGAGCTGGTGCAGCTGAA+GGG - chr4_1:7775665-7775684 None:intergenic 50.0%
ATATGAGCTGGTGCAGCTGA+AGG - chr4_1:7775666-7775685 None:intergenic 50.0%
TTCAGCTGCACCAGCTCATA+TGG + chr4_1:7775665-7775684 Msa0533080:exon 50.0%
! GTGAGGGGTATGAAGATGAG+AGG - chr4_1:7775848-7775867 None:intergenic 50.0%
GATACCACTGATCTGGTGAG+GGG - chr4_1:7775863-7775882 None:intergenic 50.0%
GGATACCACTGATCTGGTGA+GGG - chr4_1:7775864-7775883 None:intergenic 50.0%
TACCTCGGATACCACTGATC+TGG - chr4_1:7775870-7775889 None:intergenic 50.0%
GGAAACCGGTCCCACAAAAT+TGG + chr4_1:7776954-7776973 Msa0533080:intron 50.0%
! GGGTACCAATTTTGTGGGAC+CGG - chr4_1:7776962-7776981 None:intergenic 50.0%
! TTTTTGTGGCAGCCACCCTT+AGG + chr4_1:7777351-7777370 Msa0533080:intron 50.0%
ACTCCTTAGCCCCATCCTAA+GGG - chr4_1:7777369-7777388 None:intergenic 50.0%
TAATCCTCCGAGGCAACATC+TGG + chr4_1:7777405-7777424 Msa0533080:three_prime_UTR 50.0%
TACAGTAGGAGATGGTGCGC+AGG + chr4_1:7769323-7769342 Msa0533080:intron 55.0%
CGTCATTGTGTTCTCCGCCA+AGG - chr4_1:7769351-7769370 None:intergenic 55.0%
GGAGCTTACTTGGGCATGAG+TGG + chr4_1:7769400-7769419 Msa0533080:five_prime_UTR 55.0%
CATTACTTGGGGAGGGGCTT+CGG + chr4_1:7769526-7769545 Msa0533080:intron 55.0%
GGGCTTCGGTGACTTTGTGT+TGG + chr4_1:7769540-7769559 Msa0533080:intron 55.0%
! GGCTTCAGCGTCTTTGGCTT+CGG - chr4_1:7769698-7769717 None:intergenic 55.0%
! GCTGCGTCGCTAGACCTTTT+TGG + chr4_1:7770395-7770414 Msa0533080:intron 55.0%
GACTGGGGTTTCACCACTAG+TGG - chr4_1:7770665-7770684 None:intergenic 55.0%
CTGTACACCATAACGTCCGC+AGG + chr4_1:7770718-7770737 Msa0533080:intron 55.0%
GGCGGGGATATCAGTGAAGA+AGG - chr4_1:7770797-7770816 None:intergenic 55.0%
GGAGCAAGCCGTTCACTGTA+AGG - chr4_1:7770859-7770878 None:intergenic 55.0%
! GGCGTGCCTGGATACTTTTG+GGG - chr4_1:7770880-7770899 None:intergenic 55.0%
TGTTTGTCGTAAGGCGTGCC+TGG - chr4_1:7770892-7770911 None:intergenic 55.0%
AGGCACGCCTTACGACAAAC+AGG + chr4_1:7770891-7770910 Msa0533080:intron 55.0%
GGCACGCCTTACGACAAACA+GGG + chr4_1:7770892-7770911 Msa0533080:intron 55.0%
GGTGTGCCCTGTTTGTCGTA+AGG - chr4_1:7770901-7770920 None:intergenic 55.0%
!! GGCTTCTAGGGCACAGTCTT+GGG - chr4_1:7771249-7771268 None:intergenic 55.0%
!! TGGCTTCTAGGGCACAGTCT+TGG - chr4_1:7771250-7771269 None:intergenic 55.0%
!! GAGGACATTGTGGTTGGTGG+AGG - chr4_1:7771374-7771393 None:intergenic 55.0%
GCGGTTGAGGACATTGTGGT+TGG - chr4_1:7771380-7771399 None:intergenic 55.0%
AGAGTTGCGTGAAGCGGTTG+AGG - chr4_1:7771393-7771412 None:intergenic 55.0%
! ACCGATTCACATGGAGGAGG+CGG - chr4_1:7771432-7771451 None:intergenic 55.0%
GATCATTAACTCAGCCGCCC+TGG + chr4_1:7771546-7771565 Msa0533080:intron 55.0%
CATGAAGAGAGCTTCCAGGG+CGG - chr4_1:7771563-7771582 None:intergenic 55.0%
GGCCATGAAGAGAGCTTCCA+GGG - chr4_1:7771566-7771585 None:intergenic 55.0%
TGGCCATGAAGAGAGCTTCC+AGG - chr4_1:7771567-7771586 None:intergenic 55.0%
AGATTGGGAGGCCGACATTG+GGG - chr4_1:7771641-7771660 None:intergenic 55.0%
GAGATTGGGAGGCCGACATT+GGG - chr4_1:7771642-7771661 None:intergenic 55.0%
GGTTGTTCCCTGCGGAGATT+GGG - chr4_1:7771656-7771675 None:intergenic 55.0%
CGGGTCTTTGGGCCAGAATT+GGG - chr4_1:7771747-7771766 None:intergenic 55.0%
TCGGGTCTTTGGGCCAGAAT+TGG - chr4_1:7771748-7771767 None:intergenic 55.0%
TGTAGGGGATTCAGAGGAGG+TGG - chr4_1:7771790-7771809 None:intergenic 55.0%
GTGCAACAAGGCGACCCATT+AGG - chr4_1:7771912-7771931 None:intergenic 55.0%
AGGCACATACATCGCCACCA+TGG + chr4_1:7775700-7775719 Msa0533080:CDS 55.0%
CATACCCCTCACCAGATCAG+TGG + chr4_1:7775856-7775875 Msa0533080:CDS 55.0%
CGGATACCACTGATCTGGTG+AGG - chr4_1:7775865-7775884 None:intergenic 55.0%
CACCAGATCAGTGGTATCCG+AGG + chr4_1:7775865-7775884 Msa0533080:CDS 55.0%
TTATGTAGCCGAGGGGTCAC+CGG + chr4_1:7776080-7776099 Msa0533080:intron 55.0%
GTACTCACCTTCACCGTCAC+CGG + chr4_1:7776110-7776129 Msa0533080:intron 55.0%
! GAGTACTGCTGATCCGGTGA+CGG - chr4_1:7776126-7776145 None:intergenic 55.0%
AAGGGCTCAAGAGACGGTGA+AGG - chr4_1:7776185-7776204 None:intergenic 55.0%
GACTCCTTAGCCCCATCCTA+AGG - chr4_1:7777370-7777389 None:intergenic 55.0%
ACTTCCAGATGTTGCCTCGG+AGG - chr4_1:7777412-7777431 None:intergenic 55.0%
TGTAGCTTCATCGGATCGCG+AGG - chr4_1:7777463-7777482 None:intergenic 55.0%
GAGATGGTGCGCAGGAACCT+TGG + chr4_1:7769331-7769350 Msa0533080:five_prime_UTR 60.0%
ATGGTGCGCAGGAACCTTGG+CGG + chr4_1:7769334-7769353 Msa0533080:five_prime_UTR 60.0%
ACTCAGGCCTGCGGACGTTA+TGG - chr4_1:7770728-7770747 None:intergenic 60.0%
GCCGCCTCCTCCATGTGAAT+CGG + chr4_1:7771428-7771447 Msa0533080:intron 60.0%
CGCCCTGGAAGCTCTCTTCA+TGG + chr4_1:7771561-7771580 Msa0533080:intron 60.0%
GGAGATTGGGAGGCCGACAT+TGG - chr4_1:7771643-7771662 None:intergenic 60.0%
TGTTCCCTGCGGAGATTGGG+AGG - chr4_1:7771653-7771672 None:intergenic 60.0%
GGGTTGTTCCCTGCGGAGAT+TGG - chr4_1:7771657-7771676 None:intergenic 60.0%
GGGGAGGCAACAAGTCTCCA+TGG - chr4_1:7775774-7775793 None:intergenic 60.0%
CTACTGATCCGGTGACCCCT+CGG - chr4_1:7776091-7776110 None:intergenic 60.0%
! TGCTGATCCGGTGACGGTGA+AGG - chr4_1:7776120-7776139 None:intergenic 60.0%
TGTGGCAGCCACCCTTAGGA+TGG + chr4_1:7777355-7777374 Msa0533080:intron 60.0%
GTGGCAGCCACCCTTAGGAT+GGG + chr4_1:7777356-7777375 Msa0533080:intron 60.0%
TGGCAGCCACCCTTAGGATG+GGG + chr4_1:7777357-7777376 Msa0533080:intron 60.0%
CCTTAGCCCCATCCTAAGGG+TGG - chr4_1:7777366-7777385 None:intergenic 60.0%
CCACCCTTAGGATGGGGCTA+AGG + chr4_1:7777363-7777382 Msa0533080:exon 60.0%
ATCGGATCGCGAGGAACCCA+GGG - chr4_1:7777454-7777473 None:intergenic 60.0%
GGGTGGGGCTTCAGCGTCTT+TGG - chr4_1:7769704-7769723 None:intergenic 65.0%
TCGGCCTCCCAATCTCCGCA+GGG + chr4_1:7771646-7771665 Msa0533080:intron 65.0%
TCGTGGGGGGTTGTTCCCTG+CGG - chr4_1:7771664-7771683 None:intergenic 65.0%
CAGGTCGGCACTGCTACGTG+AGG - chr4_1:7772036-7772055 None:intergenic 65.0%
CATCGGATCGCGAGGAACCC+AGG - chr4_1:7777455-7777474 None:intergenic 65.0%
GTCGGCCTCCCAATCTCCGC+AGG + chr4_1:7771645-7771664 Msa0533080:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 7769061 7777795 7769061 ID=Msa0533080;Name=Msa0533080
chr4_1 mRNA 7769061 7777795 7769061 ID=Msa0533080-mRNA-1;Parent=Msa0533080;Name=Msa0533080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=551|0.8|1|1|0|0|6|423|70
chr4_1 exon 7769061 7769194 7769061 ID=Msa0533080-mRNA-1:exon:2677;Parent=Msa0533080-mRNA-1
chr4_1 exon 7769328 7769435 7769328 ID=Msa0533080-mRNA-1:exon:2678;Parent=Msa0533080-mRNA-1
chr4_1 exon 7772631 7772669 7772631 ID=Msa0533080-mRNA-1:exon:2679;Parent=Msa0533080-mRNA-1
chr4_1 exon 7773416 7773577 7773416 ID=Msa0533080-mRNA-1:exon:2680;Parent=Msa0533080-mRNA-1
chr4_1 exon 7775576 7775886 7775576 ID=Msa0533080-mRNA-1:exon:2681;Parent=Msa0533080-mRNA-1
chr4_1 exon 7777363 7777795 7777363 ID=Msa0533080-mRNA-1:exon:2682;Parent=Msa0533080-mRNA-1
chr4_1 five_prime_UTR 7769061 7769194 7769061 ID=Msa0533080-mRNA-1:five_prime_utr;Parent=Msa0533080-mRNA-1
chr4_1 five_prime_UTR 7769328 7769435 7769328 ID=Msa0533080-mRNA-1:five_prime_utr;Parent=Msa0533080-mRNA-1
chr4_1 five_prime_UTR 7772631 7772669 7772631 ID=Msa0533080-mRNA-1:five_prime_utr;Parent=Msa0533080-mRNA-1
chr4_1 five_prime_UTR 7773416 7773577 7773416 ID=Msa0533080-mRNA-1:five_prime_utr;Parent=Msa0533080-mRNA-1
chr4_1 five_prime_UTR 7775576 7775683 7775576 ID=Msa0533080-mRNA-1:five_prime_utr;Parent=Msa0533080-mRNA-1
chr4_1 CDS 7775684 7775886 7775684 ID=Msa0533080-mRNA-1:cds;Parent=Msa0533080-mRNA-1
chr4_1 CDS 7777363 7777372 7777363 ID=Msa0533080-mRNA-1:cds;Parent=Msa0533080-mRNA-1
chr4_1 three_prime_UTR 7777373 7777795 7777373 ID=Msa0533080-mRNA-1:three_prime_utr;Parent=Msa0533080-mRNA-1
Gene Sequence

>Msa0533080

ATGGAAGCTGTTATGGAGGCACATACATCGCCACCATGGAAGATATTTCTGTCTCCGATGTTTGATATGGTGGTACAAACATCGTCACCATGGAGACTTGTTGCCTCCCCAATGAATAAGGATTACTCCTTTGATCTGAGGTACTCGTCACCACCTTCATACCTCTCATCTTCATACCCCTCACCAGATCAGTGGTATCCGAGCCACCCTTAG
Protein sequence

>Msa0533080

MEAVMEAHTSPPWKIFLSPMFDMVVQTSSPWRLVASPMNKDYSFDLRYSSPPSYLSSSYPSPDQWYPSHP*