AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0996270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996270 MtrunA17_Chr6g0481041 97.940 728 13 2 1 726 1 728 0.0 1488
Msa0996270 MtrunA17_Chr7g0246631 49.721 718 322 12 23 725 85 778 0.0 679
Msa0996270 MtrunA17_Chr8g0350321 48.966 725 331 10 20 725 106 810 0.0 679
Msa0996270 MtrunA17_Chr4g0024351 47.476 733 346 14 2 726 33 734 0.0 663
Msa0996270 MtrunA17_Chr5g0410711 48.660 709 338 15 29 726 89 782 0.0 660
Msa0996270 MtrunA17_Chr2g0322731 48.077 728 338 14 2 722 72 766 0.0 654
Msa0996270 MtrunA17_Chr1g0203671 47.191 712 344 12 27 721 93 789 0.0 637
Msa0996270 MtrunA17_Chr7g0224451 64.000 500 112 6 18 509 3 442 0.0 635
Msa0996270 MtrunA17_Chr2g0331581 40.883 702 351 12 33 723 143 791 0.0 563
Msa0996270 MtrunA17_Chr6g0472471 42.318 716 363 15 33 721 73 765 1.79e-180 534
Msa0996270 MtrunA17_Chr7g0224481 62.404 391 85 5 18 400 3 339 1.67e-162 472
Msa0996270 MtrunA17_Chr5g0394111 35.235 701 345 13 36 721 40 646 8.80e-135 412
Msa0996270 MtrunA17_Chr7g0224491 66.149 322 83 7 403 724 1 296 1.27e-134 399
Msa0996270 MtrunA17_Chr2g0292731 42.383 512 264 11 220 721 58 548 2.37e-127 389
Msa0996270 MtrunA17_Chr2g0292741 42.745 510 260 11 220 721 50 535 5.18e-126 385
Msa0996270 MtrunA17_Chr2g0292761 33.762 622 322 19 108 721 1 540 4.58e-101 321
Msa0996270 MtrunA17_Chr5g0419821 61.194 134 51 1 17 149 21 154 1.92e-51 176
Msa0996270 MtrunA17_Chr7g0224431 54.938 162 31 2 249 410 1 120 3.10e-47 163
Msa0996270 MtrunA17_Chr7g0224461 63.077 130 35 4 595 724 1 117 7.71e-37 134
Msa0996270 MtrunA17_Chr2g0319671 39.884 173 96 3 280 452 104 268 1.98e-32 127
Msa0996270 MtrunA17_Chr2g0319681 32.231 242 142 6 485 721 1 225 7.46e-32 124
Msa0996270 MtrunA17_Chr2g0319701 35.270 241 126 10 489 721 5 223 5.52e-29 116
Msa0996270 MtrunA17_Chr2g0304191 43.284 134 74 2 234 366 1 133 1.63e-28 111
Msa0996270 MtrunA17_Chr2g0319691 40.000 115 61 3 340 452 1 109 2.03e-20 88.6
Msa0996270 MtrunA17_Chr1g0205981 29.592 196 105 6 84 269 1 173 7.12e-14 71.2
Msa0996270 MtrunA17_Chr1g0163701 86.486 37 5 0 340 376 238 274 1.35e-13 73.6
Msa0996270 MtrunA17_Chr4g0028991 30.769 182 90 6 18 163 9 190 8.16e-13 72.0
Msa0996270 MtrunA17_Chr7g0265521 42.000 100 53 2 28 124 61 158 3.52e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996270 AT1G73360.1 63.624 712 228 13 25 726 28 718 0.0 889
Msa0996270 AT1G17920.2 59.147 727 240 15 12 726 5 686 0.0 838
Msa0996270 AT1G17920.1 59.147 727 240 15 12 726 5 686 0.0 838
Msa0996270 AT4G04890.2 51.695 708 305 16 26 723 57 737 0.0 699
Msa0996270 AT4G04890.1 51.695 708 305 16 26 723 57 737 0.0 699
Msa0996270 AT4G21750.2 50.419 716 316 15 29 723 62 759 0.0 686
Msa0996270 AT4G21750.1 50.419 716 316 15 29 723 62 759 0.0 686
Msa0996270 AT4G21750.3 50.419 716 316 15 29 723 62 759 0.0 686
Msa0996270 AT4G21750.4 50.419 716 316 15 29 723 62 759 0.0 686
Msa0996270 AT1G05230.3 47.665 728 323 12 10 726 39 719 0.0 671
Msa0996270 AT1G05230.8 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.4 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.9 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.10 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.7 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.11 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.2 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.6 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.5 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT1G05230.1 47.534 730 323 13 10 726 39 721 0.0 666
Msa0996270 AT4G00730.1 47.003 734 341 12 2 725 107 802 0.0 640
Msa0996270 AT3G61150.1 46.732 719 344 15 28 726 109 808 0.0 632
Msa0996270 AT5G46880.3 44.490 735 345 19 20 721 102 806 0.0 571
Msa0996270 AT5G46880.1 44.490 735 345 19 20 721 102 806 0.0 571
Msa0996270 AT5G46880.2 44.490 735 345 19 20 721 102 806 0.0 571
Msa0996270 AT1G05230.12 49.556 563 254 10 29 586 64 601 0.0 548
Msa0996270 AT5G52170.3 43.266 698 315 15 33 725 61 682 0.0 537
Msa0996270 AT5G52170.1 43.266 698 315 15 33 725 61 682 0.0 537
Msa0996270 AT5G52170.2 42.574 707 312 15 33 725 61 687 0.0 534
Msa0996270 AT3G03260.1 40.921 738 367 17 9 724 7 697 7.40e-180 530
Msa0996270 AT1G79840.3 39.093 706 357 18 27 721 41 684 3.86e-172 510
Msa0996270 AT1G79840.6 39.093 706 357 18 27 721 41 684 3.86e-172 510
Msa0996270 AT1G79840.1 39.093 706 357 18 27 721 99 742 4.35e-171 509
Msa0996270 AT1G79840.2 39.093 706 357 18 27 721 128 771 1.89e-170 508
Msa0996270 AT2G32370.1 39.261 731 375 18 12 726 48 725 7.71e-164 490
Msa0996270 AT5G17320.1 40.434 737 368 18 21 723 18 717 2.11e-162 486
Msa0996270 AT4G17710.1 39.518 706 324 18 29 721 88 703 1.26e-158 476
Msa0996270 AT1G34650.1 40.247 728 377 17 21 723 13 707 2.21e-154 465
Msa0996270 AT1G79840.4 40.767 574 281 17 27 588 99 625 2.19e-143 434
Msa0996270 AT4G00730.2 48.394 467 212 9 2 461 107 551 6.09e-139 421
Msa0996270 AT3G03260.2 41.697 554 295 12 9 556 7 538 3.06e-137 415
Msa0996270 AT4G25530.1 34.807 701 393 16 29 722 40 683 9.84e-128 395
Msa0996270 AT1G79840.5 41.138 457 212 14 27 472 99 509 4.53e-105 331
Msa0996270 AT5G07260.1 24.729 554 334 19 96 641 11 489 3.24e-39 153
Msa0996270 AT5G07260.2 24.549 554 330 20 96 641 11 484 1.06e-38 151
Msa0996270 AT4G26920.1 22.876 459 254 15 201 651 54 420 3.28e-19 91.7
Msa0996270 AT5G60690.1 37.121 132 56 5 18 122 7 138 6.38e-14 76.3
Msa0996270 AT1G30490.1 34.821 112 65 2 15 118 4 115 2.18e-11 67.8
Msa0996270 AT1G52150.3 21.429 462 294 17 313 722 228 672 3.71e-11 67.0
Msa0996270 AT1G52150.1 21.429 462 294 17 313 722 228 672 4.36e-11 67.0
Msa0996270 AT1G52150.2 21.382 463 294 17 313 722 228 673 5.50e-11 66.6

Find 162 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTGGTTGAAATGTTTA+TGG 0.134213 6_4:+74212262 Msa0996270:CDS
GTAAACTACTAACCATTATT+TGG 0.141492 6_4:-74214571 None:intergenic
GACTTATCAATGGGAAATTT+TGG 0.144806 6_4:+74211909 Msa0996270:CDS
CGCAAATTGAGCAAGGTTTA+TGG 0.148416 6_4:+74212682 Msa0996270:CDS
CTCCTAGACAGATCAAATTT+TGG 0.209657 6_4:+74210587 Msa0996270:CDS
CGATGCCATCGTCTTCCTTC+TGG 0.222235 6_4:+74212762 Msa0996270:CDS
TAGTGGGATGTTCTTTCTAA+TGG 0.252600 6_4:+74213765 Msa0996270:intron
GAGTCTGTTGCAACTGTTAA+TGG 0.255130 6_4:+74214614 Msa0996270:CDS
TAGCAATATGAGCAACTTCT+TGG 0.257077 6_4:-74213797 None:intergenic
TTCAACCGATTATTAGTCTT+AGG 0.265573 6_4:-74212179 None:intergenic
GCAACTGTTAATGGACTTAT+TGG 0.266967 6_4:+74214623 Msa0996270:CDS
AACAGTTGCATTCCAAATAA+TGG 0.273585 6_4:+74214559 Msa0996270:CDS
TTCATTGATGTTAATTCAAT+TGG 0.303666 6_4:-74214353 None:intergenic
GGTCACTTGGATTGAACATT+TGG 0.308899 6_4:+74212904 Msa0996270:intron
TGAAAGGCTTGCTTGTTCTA+TGG 0.312367 6_4:+74213030 Msa0996270:CDS
ATCTATAACGGAGCTGCATT+TGG 0.318855 6_4:+74212971 Msa0996270:CDS
TGCATAGTTGATGAACTTCC+AGG 0.324010 6_4:-74211978 None:intergenic
TGCAGACTAATGAGCCTCTA+TGG 0.337717 6_4:+74212096 Msa0996270:CDS
CACATTCCAGTAACACCTTC+AGG 0.343396 6_4:+74214404 Msa0996270:CDS
GAAGTTGCTCATATTGCTAA+TGG 0.348124 6_4:+74213801 Msa0996270:CDS
GCAACTCCATCTCTGTGCTT+AGG 0.352073 6_4:+74213835 Msa0996270:CDS
GATTGGTCTTCCAATGTATT+TGG 0.360707 6_4:-74211844 None:intergenic
ACTATTGAAGTTATCTCTTC+CGG 0.360715 6_4:+74212426 Msa0996270:CDS
AGTGGGATGTTCTTTCTAAT+GGG 0.366936 6_4:+74213766 Msa0996270:intron
ATGTGAGAATATAGCTATAA+GGG 0.368026 6_4:+74211117 Msa0996270:CDS
CTTGCCATTGTCACAATAGT+TGG 0.375821 6_4:-74212402 None:intergenic
ATCGAAATTGCGGAGCAAAT+TGG 0.375959 6_4:-74212743 None:intergenic
GTGAAACCTGAAGGTGTTAC+TGG 0.378283 6_4:-74214410 None:intergenic
GCAAATTGAGCAAGGTTTAT+GGG 0.381720 6_4:+74212683 Msa0996270:CDS
TTCATCATTGGACTTATCAA+TGG 0.382138 6_4:+74211899 Msa0996270:CDS
AAGAAATTGAAAACAGTTTG+TGG 0.386401 6_4:-74213626 None:intergenic
TGCAACCTTTGTTTCTCATC+AGG 0.387813 6_4:-74210541 None:intergenic
GAAGCTTCAATGCGAATATT+CGG 0.387981 6_4:-74212206 None:intergenic
ACCAATTCACATTTCATCAT+TGG 0.388149 6_4:+74211887 Msa0996270:CDS
AGGAAATAAAATTCTCTGAT+AGG 0.398491 6_4:-74212648 None:intergenic
GAGAATCAGAAGAACCTTCA+TGG 0.402346 6_4:-74210292 None:intergenic
GATGTGAGAATATAGCTATA+AGG 0.404730 6_4:+74211116 Msa0996270:CDS
CAACTCCATCTCTGTGCTTA+GGG 0.406270 6_4:+74213836 Msa0996270:CDS
CACTTCCACCATTGTTCCCT+AGG 0.407591 6_4:-74214523 None:intergenic
TTTGGTGGGCATGGAATGGT+TGG 0.409505 6_4:+74211927 Msa0996270:CDS
TCTCGTGTTGTTATCATGAA+TGG 0.413589 6_4:+74212236 Msa0996270:CDS
ATTACCTTGGAATAGCCATT+AGG 0.415323 6_4:-74212804 None:intergenic
TCCTAGTGGTTCTATGCAAT+TGG 0.415939 6_4:+74212461 Msa0996270:CDS
TTCATTCAAGACATGCCTAA+TGG 0.418765 6_4:+74212789 Msa0996270:CDS
TTTCTATAAAGCCTATGAAC+TGG 0.420383 6_4:-74212944 None:intergenic
AGTTATCTCTTCCGGAATGA+TGG 0.421743 6_4:+74212434 Msa0996270:CDS
ATGCAATGGAAGAGATGATT+AGG 0.426158 6_4:+74212069 Msa0996270:CDS
GGTGGGCATGGAATGGTTGG+AGG 0.429152 6_4:+74211930 Msa0996270:CDS
CTTGATCTTGATCTTCTACC+TGG 0.430302 6_4:+74211960 Msa0996270:CDS
GATAACAATAACAATCTTCA+AGG 0.430765 6_4:+74214458 Msa0996270:CDS
GTGCATCAGCTAGTCATAGA+TGG 0.431673 6_4:+74213486 Msa0996270:CDS
TTAAAGCAGCTTTGATGTGT+TGG 0.431801 6_4:-74214655 None:intergenic
CTGCTCTTTCCCTCAGGTGA+TGG 0.432769 6_4:-74213413 None:intergenic
AAGAAACAATCATCATTGAT+TGG 0.440524 6_4:-74211181 None:intergenic
AAAACAGTTTGTGGAGGGAG+AGG 0.444588 6_4:-74213617 None:intergenic
GGTTTCACAATCACTTCTGA+TGG 0.448901 6_4:+74214425 Msa0996270:CDS
ATCATGCTGCTCTTTCCCTC+AGG 0.452513 6_4:-74213419 None:intergenic
TCCAATGATGAAATGTGAAT+TGG 0.452865 6_4:-74211888 None:intergenic
TATCATGAATGGCTTAGCTT+TGG 0.453058 6_4:+74212247 Msa0996270:CDS
TCAACCGATTATTAGTCTTA+GGG 0.457224 6_4:-74212178 None:intergenic
GTTTCTGCCACCCGTGATCT+CGG 0.464633 6_4:+74213052 Msa0996270:CDS
AGGGAGTCAGAGTTACTGTT+AGG 0.465910 6_4:+74213531 Msa0996270:CDS
ACTGGTGGAAGCTGTGTGAT+TGG 0.466182 6_4:-74211861 None:intergenic
CACACTTTCAGCTTTGAATG+AGG 0.466242 6_4:+74213511 Msa0996270:CDS
TCATCATTGGACTTATCAAT+GGG 0.471502 6_4:+74211900 Msa0996270:CDS
TATAGAAATGCTATCTATAA+CGG 0.478402 6_4:+74212959 Msa0996270:CDS
GAAAGGCAAGCTGGTTGGTA+AGG 0.487355 6_4:-74212008 None:intergenic
GTTAAGCAGAGAATTAGCTT+TGG 0.491594 6_4:+74210564 Msa0996270:CDS
GAAAGCTGTGTGGATTCATC+AGG 0.491631 6_4:+74214311 Msa0996270:CDS
CTAGGGAACAATGGTGGAAG+TGG 0.494985 6_4:+74214524 Msa0996270:CDS
ACCAGCTTGCCTTTCTGACA+TGG 0.500844 6_4:+74212016 Msa0996270:CDS
ACTAGGACCGCCCATCATTC+CGG 0.503018 6_4:-74212445 None:intergenic
TATGTGCAGCTACTACCATT+TGG 0.503380 6_4:+74213591 Msa0996270:CDS
GAGTTTGATTTCATCCATAG+AGG 0.504517 6_4:-74212110 None:intergenic
GCATCAACAAGCTCAAACCT+AGG 0.505348 6_4:+74214506 Msa0996270:CDS
CTTTGTTTCTCATCAGGATG+AGG 0.506519 6_4:-74210535 None:intergenic
TCAATTTCTTCAAAGATGAA+AGG 0.508178 6_4:+74213639 Msa0996270:CDS
CTGCATTTGGAGCTGAAAGA+TGG 0.510050 6_4:+74212984 Msa0996270:CDS
GAAATGTGAATTGGTGCAAC+TGG 0.511399 6_4:-74211879 None:intergenic
AGTGGAGCAAGTGGGTCCCC+TGG 0.514639 6_4:+74210248 Msa0996270:CDS
GCCACCCGTGATCTCGGTGG+AGG 0.515311 6_4:+74213058 Msa0996270:CDS
AATAACAATCTTCAAGGAAG+TGG 0.515892 6_4:+74214464 Msa0996270:CDS
TGTTCCCTAAGACTAATAAT+CGG 0.516268 6_4:+74212174 Msa0996270:CDS
CTCTTCAGAGGATGTGTGAA+AGG 0.517397 6_4:+74213014 Msa0996270:CDS
AGCACAGAGATGGAGTTGCC+AGG 0.521625 6_4:-74213831 None:intergenic
GTTATCTCTTCCGGAATGAT+GGG 0.526499 6_4:+74212435 Msa0996270:CDS
TCCATGTCAGAAAGGCAAGC+TGG 0.530766 6_4:-74212017 None:intergenic
TATTCGCATTGAAGCTTCGA+GGG 0.530981 6_4:+74212211 Msa0996270:CDS
GAGCTGATAACTGTCAACTA+AGG 0.535625 6_4:+74211074 Msa0996270:CDS
GGAATGATGGGCGGTCCTAG+TGG 0.548451 6_4:+74212447 Msa0996270:CDS
GAACAGAAGGACTCAGATGA+AGG 0.553957 6_4:+74210615 Msa0996270:CDS
ATTTCCAACTATTGTGACAA+TGG 0.554025 6_4:+74212398 Msa0996270:CDS
AGCATTGCTGCCAAATACAT+TGG 0.554442 6_4:+74211834 Msa0996270:CDS
GTTGTCATGAGGAAAATCAT+AGG 0.556836 6_4:-74212721 None:intergenic
ACACTTTCAGCTTTGAATGA+GGG 0.558221 6_4:+74213512 Msa0996270:CDS
AATTGAAAACAGTTTGTGGA+GGG 0.561046 6_4:-74213622 None:intergenic
TACTGTACGCAAATTGAGCA+AGG 0.562069 6_4:+74212675 Msa0996270:CDS
GCACAGAGATGGAGTTGCCA+GGG 0.562213 6_4:-74213830 None:intergenic
AGTGGTAATGTTAATGCTGA+TGG 0.563501 6_4:+74214482 Msa0996270:CDS
AGATGAAAGGAAAAGATCAC+AGG 0.565819 6_4:+74213652 Msa0996270:CDS
GTGATCTGCCCCTCTTGTGG+TGG 0.567379 6_4:+74211154 Msa0996270:CDS
GTATACCTCCACCGAGATCA+CGG 0.569764 6_4:-74213063 None:intergenic
ATTGCTAATGGTTCACACCC+TGG 0.570168 6_4:+74213813 Msa0996270:CDS
ACCATCTGCTAAACTTAACA+TGG 0.570228 6_4:+74214592 Msa0996270:CDS
CATCATCATCATCACCATGA+AGG 0.573382 6_4:+74210278 Msa0996270:CDS
GCACATAGCACAACACCACT+AGG 0.575221 6_4:-74213575 None:intergenic
CATGCCTAATGGCTATTCCA+AGG 0.578979 6_4:+74212800 Msa0996270:CDS
TTAATCTTGAAAACTATGAG+AGG 0.580418 6_4:+74212150 Msa0996270:CDS
TGGATGAAATCAAACTCTGA+TGG 0.581105 6_4:+74212116 Msa0996270:CDS
TCAGCGATTCCATCACCTGA+GGG 0.581584 6_4:+74213404 Msa0996270:intron
AAATGTGCAACTCAAAGAAG+AGG 0.585426 6_4:+74211228 Msa0996270:CDS
AACCAAAATTTGATCTGTCT+AGG 0.585787 6_4:-74210589 None:intergenic
GGGAACAATGGTGGAAGTGG+AGG 0.586180 6_4:+74214527 Msa0996270:CDS
CTGAAGGTGTTACTGGAATG+TGG 0.586831 6_4:-74214403 None:intergenic
GTTAGGAAAAGTACTGAGCT+TGG 0.589683 6_4:+74213548 Msa0996270:CDS
TCTTACCCTAAGCACAGAGA+TGG 0.590044 6_4:-74213841 None:intergenic
TCCATGTTAAGTTTAGCAGA+TGG 0.590444 6_4:-74214593 None:intergenic
CTCATTCAAAGCTGAAAGTG+TGG 0.591958 6_4:-74213510 None:intergenic
ATATTCGCATTGAAGCTTCG+AGG 0.592812 6_4:+74212210 Msa0996270:CDS
TGGAGGGAGAGGTAGCCAAA+TGG 0.596344 6_4:-74213606 None:intergenic
AGACGATGGCATCGAAATTG+CGG 0.597430 6_4:-74212753 None:intergenic
TATACCTCCACCGAGATCAC+GGG 0.602328 6_4:-74213062 None:intergenic
GATGGCTCACTACTCTTCAG+AGG 0.604495 6_4:+74213002 Msa0996270:CDS
CTCATCCTGATGAGAAACAA+AGG 0.606148 6_4:+74210536 Msa0996270:CDS
AGCTCAAACCTAGGGAACAA+TGG 0.607766 6_4:+74214515 Msa0996270:CDS
TCTTGAATGAAGCAACCAGA+AGG 0.608093 6_4:-74212777 None:intergenic
TGTCAGAAAGGCAAGCTGGT+TGG 0.608188 6_4:-74212013 None:intergenic
GATTGGAGGACCACCACAAG+AGG 0.608794 6_4:-74211164 None:intergenic
AAACAATCATCATTGATTGG+AGG 0.609512 6_4:-74211178 None:intergenic
GAGTATCATAGTGGAGCAAG+TGG 0.613997 6_4:+74210239 Msa0996270:CDS
TGACATTGCATCAAATGCAA+TGG 0.614917 6_4:+74212055 Msa0996270:CDS
ACACTGCTAATCAGATTCAA+AGG 0.615484 6_4:+74210342 Msa0996270:CDS
TTGGAAATAGAGCCATCCAC+TGG 0.617273 6_4:-74212383 None:intergenic
GATGAAGCTAGCACAAAGGA+TGG 0.618354 6_4:+74213439 Msa0996270:CDS
AATTCTCTGATAGGAACAAG+TGG 0.618600 6_4:-74212639 None:intergenic
TTCAGCGATTCCATCACCTG+AGG 0.619756 6_4:+74213403 Msa0996270:intron
ATCTCTTCCGGAATGATGGG+CGG 0.622184 6_4:+74212438 Msa0996270:CDS
CAACTATTGTGACAATGGCA+AGG 0.622296 6_4:+74212403 Msa0996270:CDS
AAATTGAAAACAGTTTGTGG+AGG 0.630363 6_4:-74213623 None:intergenic
CAATTTGCGTACAGTAACGC+AGG 0.630665 6_4:-74212668 None:intergenic
CATCAACAAGCTCAAACCTA+GGG 0.632798 6_4:+74214507 Msa0996270:CDS
AGAAGATCAAGATCAAGTGA+AGG 0.633385 6_4:-74211954 None:intergenic
ATGTGAATTGGTGCAACTGG+TGG 0.640938 6_4:-74211876 None:intergenic
AATGTGATCTGCCCCTCTTG+TGG 0.645075 6_4:+74211151 Msa0996270:CDS
GGAGCAAATTGGTTGTCATG+AGG 0.645718 6_4:-74212732 None:intergenic
ATTGGAGGACCACCACAAGA+GGG 0.645788 6_4:-74211163 None:intergenic
ACTGAGCTTGGTCAGCCTAG+TGG 0.646545 6_4:+74213560 Msa0996270:CDS
ACCTCCACCGAGATCACGGG+TGG 0.647060 6_4:-74213059 None:intergenic
GAAGTGATTGTGAAACCTGA+AGG 0.654254 6_4:-74214419 None:intergenic
GAATCTGATTAGCAGTGTGA+CGG 0.657531 6_4:-74210337 None:intergenic
TCTGCCACCCGTGATCTCGG+TGG 0.670940 6_4:+74213055 Msa0996270:CDS
TGAAGGTGTTACTGGAATGT+GGG 0.675743 6_4:-74214402 None:intergenic
GCATGATGAAGCTAGCACAA+AGG 0.680662 6_4:+74213435 Msa0996270:CDS
TCAAACCTAGGGAACAATGG+TGG 0.694105 6_4:+74214518 Msa0996270:CDS
TTGGAGGACCACCACAAGAG+GGG 0.698087 6_4:-74211162 None:intergenic
ACCAATTGCATAGAACCACT+AGG 0.707017 6_4:-74212462 None:intergenic
AGTATCATAGTGGAGCAAGT+GGG 0.711511 6_4:+74210240 Msa0996270:CDS
TCTGATTAGCAGTGTGACGG+TGG 0.712245 6_4:-74210334 None:intergenic
TCAATGAATGTAGCAATGAG+TGG 0.714910 6_4:+74214368 Msa0996270:CDS
AGCAACCAGAAGGAAGACGA+TGG 0.719881 6_4:-74212767 None:intergenic
GATACTTCAAGAAAGCTGTG+TGG 0.771950 6_4:+74214301 Msa0996270:CDS
ATGATGATGATGATCACCAG+GGG 0.774959 6_4:-74210264 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATATATAAAAAAA+TGG - chr6_4:74210475-74210494 None:intergenic 0.0%
!! TTATTATTATTATAAAATTT+AGG + chr6_4:74210922-74210941 Msa0996270:intron 0.0%
!!! ATGTTTCTTTATTTTATTAA+AGG - chr6_4:74210673-74210692 None:intergenic 10.0%
!!! TAATTATGTGTTATTTTAAT+TGG + chr6_4:74211015-74211034 Msa0996270:intron 10.0%
!!! TTAAGAAATTGTAATTTTAT+AGG - chr6_4:74211359-74211378 None:intergenic 10.0%
!!! TTAATAAAGTATTAATTCAA+AGG - chr6_4:74212834-74212853 None:intergenic 10.0%
!! ATAAAAAATAAATAAAATGG+AGG - chr6_4:74213874-74213893 None:intergenic 10.0%
!! TGGATAAAAAATAAATAAAA+TGG - chr6_4:74213877-74213896 None:intergenic 10.0%
!! TACTGAAGAAAAAAAAAATA+GGG - chr6_4:74210501-74210520 None:intergenic 15.0%
!! ATACTGAAGAAAAAAAAAAT+AGG - chr6_4:74210502-74210521 None:intergenic 15.0%
!!! TGTGTATTTTATATTTATGT+TGG + chr6_4:74210817-74210836 Msa0996270:intron 15.0%
!! AAAATTAAAACAAGTAAACA+TGG - chr6_4:74211736-74211755 None:intergenic 15.0%
!!! ATTTACAATGTACTTTTATA+TGG + chr6_4:74211764-74211783 Msa0996270:intron 15.0%
!!! TTTTATATGGTCAATTTAAA+TGG + chr6_4:74211777-74211796 Msa0996270:intron 15.0%
!! TAATATTAGGTATACAAATT+CGG - chr6_4:74212507-74212526 None:intergenic 15.0%
!!! TTTTTTTTGTTTTTGTTTAG+TGG + chr6_4:74213748-74213767 Msa0996270:intron 15.0%
!!! TTTTTTTGTTTTTGTTTAGT+GGG + chr6_4:74213749-74213768 Msa0996270:intron 15.0%
!! AAAGAAACATGAATTAATGA+AGG + chr6_4:74210683-74210702 Msa0996270:intron 20.0%
!!! TCAAATTGTGTATTTTTTTC+TGG + chr6_4:74210727-74210746 Msa0996270:intron 20.0%
!!! ATAAAGTTTGTGTATTTTTC+TGG + chr6_4:74210856-74210875 Msa0996270:intron 20.0%
!! ATTATAAAATTTAGGAGAGT+TGG + chr6_4:74210930-74210949 Msa0996270:intron 20.0%
!! TTATAAAATTTAGGAGAGTT+GGG + chr6_4:74210931-74210950 Msa0996270:intron 20.0%
!!! GTTATTTTAATTGGATTTTG+TGG + chr6_4:74211024-74211043 Msa0996270:intron 20.0%
!! AAATTGAACAAAACATTTGT+AGG + chr6_4:74211429-74211448 Msa0996270:intron 20.0%
!! AATTGAACAAAACATTTGTA+GGG + chr6_4:74211430-74211449 Msa0996270:intron 20.0%
!!! AAAAAGATCGTGATTTTTAT+AGG + chr6_4:74211463-74211482 Msa0996270:intron 20.0%
!!! TTTTTGATAGCACTAATATT+AGG - chr6_4:74212520-74212539 None:intergenic 20.0%
!!! GTTACTCTTGTATATTTTAT+AGG + chr6_4:74212883-74212902 Msa0996270:intron 20.0%
!! TATAGAAATGCTATCTATAA+CGG + chr6_4:74212959-74212978 Msa0996270:CDS 20.0%
!!! TTCTAAAAACAGTTATATTG+TGG - chr6_4:74213200-74213219 None:intergenic 20.0%
!! ATAAAAAACATTTCATCCTA+AGG - chr6_4:74213719-74213738 None:intergenic 20.0%
!! ATTAGAATCGAAATTAAATC+CGG - chr6_4:74214223-74214242 None:intergenic 20.0%
!!! TGTGAATTTTCAAATGTAAT+AGG + chr6_4:74214250-74214269 Msa0996270:intron 20.0%
!! TTCATTGATGTTAATTCAAT+TGG - chr6_4:74214356-74214375 None:intergenic 20.0%
!!! TTTTTTCTTCAGTATGTTCA+AGG + chr6_4:74210507-74210526 Msa0996270:intron 25.0%
!! TTAATTGGATTTTGTGGTTT+TGG + chr6_4:74211030-74211049 Msa0996270:intron 25.0%
! ATGTGAGAATATAGCTATAA+GGG + chr6_4:74211117-74211136 Msa0996270:CDS 25.0%
! AAGAAACAATCATCATTGAT+TGG - chr6_4:74211184-74211203 None:intergenic 25.0%
!!! GTACAATTTTAGTCTCTATA+AGG + chr6_4:74211402-74211421 Msa0996270:intron 25.0%
!!! TATAAAGGATTTTAACGTCT+CGG - chr6_4:74211675-74211694 None:intergenic 25.0%
! TTAATCTTGAAAACTATGAG+AGG + chr6_4:74212150-74212169 Msa0996270:CDS 25.0%
! AGGAAATAAAATTCTCTGAT+AGG - chr6_4:74212651-74212670 None:intergenic 25.0%
! ATTCAAAGGTTATATTACCT+TGG - chr6_4:74212820-74212839 None:intergenic 25.0%
!! TGTATATTTTATAGGTCACT+TGG + chr6_4:74212891-74212910 Msa0996270:intron 25.0%
!!! TCTCTAAAACTGTTATATTG+TGG - chr6_4:74213157-74213176 None:intergenic 25.0%
!!! TCGATCACATTTTATTTTCT+TGG + chr6_4:74213347-74213366 Msa0996270:intron 25.0%
! AAGAAATTGAAAACAGTTTG+TGG - chr6_4:74213629-74213648 None:intergenic 25.0%
! TCAATTTCTTCAAAGATGAA+AGG + chr6_4:74213639-74213658 Msa0996270:CDS 25.0%
! TTATTTGATTCTATGACCTT+AGG + chr6_4:74213700-74213719 Msa0996270:intron 25.0%
!!! TTATCCACTTTGTTTTCAAT+TGG + chr6_4:74213890-74213909 Msa0996270:intron 25.0%
! GATAACAATAACAATCTTCA+AGG + chr6_4:74214458-74214477 Msa0996270:CDS 25.0%
! GTAAACTACTAACCATTATT+TGG - chr6_4:74214574-74214593 None:intergenic 25.0%
! TCAAAAATGGAGTATCATAG+TGG + chr6_4:74210230-74210249 Msa0996270:exon 30.0%
AACCAAAATTTGATCTGTCT+AGG - chr6_4:74210592-74210611 None:intergenic 30.0%
!!! AATTTTGGTTTCAGAACAGA+AGG + chr6_4:74210602-74210621 Msa0996270:CDS 30.0%
!!! GGTCTTATTAGTTTTTCTCA+TGG + chr6_4:74210704-74210723 Msa0996270:intron 30.0%
!!! TTTTGTGGTTTTGGTTAAAC+AGG + chr6_4:74211039-74211058 Msa0996270:intron 30.0%
GATGTGAGAATATAGCTATA+AGG + chr6_4:74211116-74211135 Msa0996270:CDS 30.0%
! AAACAATCATCATTGATTGG+AGG - chr6_4:74211181-74211200 None:intergenic 30.0%
! ACATTTTGCCGCAAAAATAA+AGG - chr6_4:74211542-74211561 None:intergenic 30.0%
TTTGGTTGCAATTGCAATTA+CGG + chr6_4:74211606-74211625 Msa0996270:intron 30.0%
! CAAATTTTACGTAGCAAATG+TGG + chr6_4:74211631-74211650 Msa0996270:intron 30.0%
CAATTACAGCAGCAATATAA+AGG - chr6_4:74211690-74211709 None:intergenic 30.0%
ACCAATTCACATTTCATCAT+TGG + chr6_4:74211887-74211906 Msa0996270:CDS 30.0%
TCCAATGATGAAATGTGAAT+TGG - chr6_4:74211891-74211910 None:intergenic 30.0%
TTCATCATTGGACTTATCAA+TGG + chr6_4:74211899-74211918 Msa0996270:CDS 30.0%
TCATCATTGGACTTATCAAT+GGG + chr6_4:74211900-74211919 Msa0996270:CDS 30.0%
! GACTTATCAATGGGAAATTT+TGG + chr6_4:74211909-74211928 Msa0996270:CDS 30.0%
! TTATCAATGGGAAATTTTGG+TGG + chr6_4:74211912-74211931 Msa0996270:CDS 30.0%
!! TATCAATGGGAAATTTTGGT+GGG + chr6_4:74211913-74211932 Msa0996270:CDS 30.0%
TGTTCCCTAAGACTAATAAT+CGG + chr6_4:74212174-74212193 Msa0996270:CDS 30.0%
!! TCAACCGATTATTAGTCTTA+GGG - chr6_4:74212181-74212200 None:intergenic 30.0%
!! TTCAACCGATTATTAGTCTT+AGG - chr6_4:74212182-74212201 None:intergenic 30.0%
! AGCTTTGGTTGAAATGTTTA+TGG + chr6_4:74212262-74212281 Msa0996270:CDS 30.0%
GAACAAGTATAAGTACTTAC+TGG - chr6_4:74212290-74212309 None:intergenic 30.0%
!! GATTTATTTTTCAGAACCAG+TGG + chr6_4:74212367-74212386 Msa0996270:intron 30.0%
ATTTCCAACTATTGTGACAA+TGG + chr6_4:74212398-74212417 Msa0996270:CDS 30.0%
ACTATTGAAGTTATCTCTTC+CGG + chr6_4:74212426-74212445 Msa0996270:CDS 30.0%
AAGACAAAAATCCAGTTCAT+AGG + chr6_4:74212933-74212952 Msa0996270:CDS 30.0%
TTTCTATAAAGCCTATGAAC+TGG - chr6_4:74212947-74212966 None:intergenic 30.0%
!!! TATAACAGTTTTAGAGACGT+CGG + chr6_4:74213160-74213179 Msa0996270:intron 30.0%
! TTTGTTTGCATTTTACTGCA+AGG + chr6_4:74213256-74213275 Msa0996270:intron 30.0%
ATGTGATCGAAATTCATCTA+TGG - chr6_4:74213337-74213356 None:intergenic 30.0%
GATCTTAAAGTCATGGATAT+CGG + chr6_4:74213375-74213394 Msa0996270:intron 30.0%
AATTGAAAACAGTTTGTGGA+GGG - chr6_4:74213625-74213644 None:intergenic 30.0%
AAATTGAAAACAGTTTGTGG+AGG - chr6_4:74213626-74213645 None:intergenic 30.0%
ACACGTTGCAAGTAAAAAAT+GGG - chr6_4:74214143-74214162 None:intergenic 30.0%
AACACGTTGCAAGTAAAAAA+TGG - chr6_4:74214144-74214163 None:intergenic 30.0%
AATAACAATCTTCAAGGAAG+TGG + chr6_4:74214464-74214483 Msa0996270:CDS 30.0%
AACAGTTGCATTCCAAATAA+TGG + chr6_4:74214559-74214578 Msa0996270:CDS 30.0%
ACACTGCTAATCAGATTCAA+AGG + chr6_4:74210342-74210361 Msa0996270:CDS 35.0%
! GTTAAGCAGAGAATTAGCTT+TGG + chr6_4:74210564-74210583 Msa0996270:CDS 35.0%
! CTCCTAGACAGATCAAATTT+TGG + chr6_4:74210587-74210606 Msa0996270:CDS 35.0%
! CAAATAAAGCTTTGACCATG+AGG - chr6_4:74210966-74210985 None:intergenic 35.0%
AAATGTGCAACTCAAAGAAG+AGG + chr6_4:74211228-74211247 Msa0996270:CDS 35.0%
!!! GCCGTAAACCTTTATTTTTG+CGG + chr6_4:74211531-74211550 Msa0996270:intron 35.0%
GCCGCAAAAATAAAGGTTTA+CGG - chr6_4:74211535-74211554 None:intergenic 35.0%
CAATTGCAACCAAAGCATAA+AGG - chr6_4:74211600-74211619 None:intergenic 35.0%
!! GATTGGTCTTCCAATGTATT+TGG - chr6_4:74211847-74211866 None:intergenic 35.0%
AGAAGATCAAGATCAAGTGA+AGG - chr6_4:74211957-74211976 None:intergenic 35.0%
! GAGATTTTTCCATGTCAGAA+AGG - chr6_4:74212028-74212047 None:intergenic 35.0%
TGACATTGCATCAAATGCAA+TGG + chr6_4:74212055-74212074 Msa0996270:CDS 35.0%
ATGCAATGGAAGAGATGATT+AGG + chr6_4:74212069-74212088 Msa0996270:CDS 35.0%
! GAGTTTGATTTCATCCATAG+AGG - chr6_4:74212113-74212132 None:intergenic 35.0%
TGGATGAAATCAAACTCTGA+TGG + chr6_4:74212116-74212135 Msa0996270:CDS 35.0%
GAAGCTTCAATGCGAATATT+CGG - chr6_4:74212209-74212228 None:intergenic 35.0%
! TCTCGTGTTGTTATCATGAA+TGG + chr6_4:74212236-74212255 Msa0996270:CDS 35.0%
TATCATGAATGGCTTAGCTT+TGG + chr6_4:74212247-74212266 Msa0996270:CDS 35.0%
!! TATTTTTCAGAACCAGTGGA+TGG + chr6_4:74212371-74212390 Msa0996270:intron 35.0%
AATTCTCTGATAGGAACAAG+TGG - chr6_4:74212642-74212661 None:intergenic 35.0%
GCAAATTGAGCAAGGTTTAT+GGG + chr6_4:74212683-74212702 Msa0996270:CDS 35.0%
GTTGTCATGAGGAAAATCAT+AGG - chr6_4:74212724-74212743 None:intergenic 35.0%
TTCATTCAAGACATGCCTAA+TGG + chr6_4:74212789-74212808 Msa0996270:CDS 35.0%
ATTACCTTGGAATAGCCATT+AGG - chr6_4:74212807-74212826 None:intergenic 35.0%
!! TGGTTCTAAATAACAGATGC+AGG - chr6_4:74213293-74213312 None:intergenic 35.0%
! CGCATTGATACATATGCATA+TGG - chr6_4:74213313-74213332 None:intergenic 35.0%
!! ACACTTTCAGCTTTGAATGA+GGG + chr6_4:74213512-74213531 Msa0996270:CDS 35.0%
AGATGAAAGGAAAAGATCAC+AGG + chr6_4:74213652-74213671 Msa0996270:CDS 35.0%
TAGTGGGATGTTCTTTCTAA+TGG + chr6_4:74213765-74213784 Msa0996270:intron 35.0%
AGTGGGATGTTCTTTCTAAT+GGG + chr6_4:74213766-74213785 Msa0996270:intron 35.0%
TAGCAATATGAGCAACTTCT+TGG - chr6_4:74213800-74213819 None:intergenic 35.0%
GAAGTTGCTCATATTGCTAA+TGG + chr6_4:74213801-74213820 Msa0996270:CDS 35.0%
CTCACCAATTGAAAACAAAG+TGG - chr6_4:74213897-74213916 None:intergenic 35.0%
!!! CTTTGTTTTCAATTGGTGAG+AGG + chr6_4:74213897-74213916 Msa0996270:intron 35.0%
AAATTAAATCCGGCGAACTA+GGG - chr6_4:74214213-74214232 None:intergenic 35.0%
TCAATGAATGTAGCAATGAG+TGG + chr6_4:74214368-74214387 Msa0996270:CDS 35.0%
! AGTGGTAATGTTAATGCTGA+TGG + chr6_4:74214482-74214501 Msa0996270:CDS 35.0%
ACCATCTGCTAAACTTAACA+TGG + chr6_4:74214592-74214611 Msa0996270:CDS 35.0%
TCCATGTTAAGTTTAGCAGA+TGG - chr6_4:74214596-74214615 None:intergenic 35.0%
!! GCAACTGTTAATGGACTTAT+TGG + chr6_4:74214623-74214642 Msa0996270:CDS 35.0%
! TTAAAGCAGCTTTGATGTGT+TGG - chr6_4:74214658-74214677 None:intergenic 35.0%
! AGTATCATAGTGGAGCAAGT+GGG + chr6_4:74210240-74210259 Msa0996270:CDS 40.0%
! ATGATGATGATGATCACCAG+GGG - chr6_4:74210267-74210286 None:intergenic 40.0%
! GATGATGATGATGATCACCA+GGG - chr6_4:74210268-74210287 None:intergenic 40.0%
! TGATGATGATGATGATCACC+AGG - chr6_4:74210269-74210288 None:intergenic 40.0%
CATCATCATCATCACCATGA+AGG + chr6_4:74210278-74210297 Msa0996270:CDS 40.0%
GAGAATCAGAAGAACCTTCA+TGG - chr6_4:74210295-74210314 None:intergenic 40.0%
GAATCTGATTAGCAGTGTGA+CGG - chr6_4:74210340-74210359 None:intergenic 40.0%
! CTTTGTTTCTCATCAGGATG+AGG - chr6_4:74210538-74210557 None:intergenic 40.0%
CTCATCCTGATGAGAAACAA+AGG + chr6_4:74210536-74210555 Msa0996270:CDS 40.0%
! TGCAACCTTTGTTTCTCATC+AGG - chr6_4:74210544-74210563 None:intergenic 40.0%
GAGCTGATAACTGTCAACTA+AGG + chr6_4:74211074-74211093 Msa0996270:CDS 40.0%
! GGGGCAGATCACATTTTTAA+GGG - chr6_4:74211146-74211165 None:intergenic 40.0%
! AGGGGCAGATCACATTTTTA+AGG - chr6_4:74211147-74211166 None:intergenic 40.0%
CCAAAGCATAAAGGACTTTG+AGG - chr6_4:74211591-74211610 None:intergenic 40.0%
CCTCAAAGTCCTTTATGCTT+TGG + chr6_4:74211588-74211607 Msa0996270:intron 40.0%
AGCATTGCTGCCAAATACAT+TGG + chr6_4:74211834-74211853 Msa0996270:CDS 40.0%
GAAATGTGAATTGGTGCAAC+TGG - chr6_4:74211882-74211901 None:intergenic 40.0%
!! AAATTTTGGTGGGCATGGAA+TGG + chr6_4:74211923-74211942 Msa0996270:CDS 40.0%
CTTGATCTTGATCTTCTACC+TGG + chr6_4:74211960-74211979 Msa0996270:CDS 40.0%
!! TGCATAGTTGATGAACTTCC+AGG - chr6_4:74211981-74212000 None:intergenic 40.0%
ATATTCGCATTGAAGCTTCG+AGG + chr6_4:74212210-74212229 Msa0996270:CDS 40.0%
TATTCGCATTGAAGCTTCGA+GGG + chr6_4:74212211-74212230 Msa0996270:CDS 40.0%
CTTGCCATTGTCACAATAGT+TGG - chr6_4:74212405-74212424 None:intergenic 40.0%
CAACTATTGTGACAATGGCA+AGG + chr6_4:74212403-74212422 Msa0996270:CDS 40.0%
AGTTATCTCTTCCGGAATGA+TGG + chr6_4:74212434-74212453 Msa0996270:CDS 40.0%
GTTATCTCTTCCGGAATGAT+GGG + chr6_4:74212435-74212454 Msa0996270:CDS 40.0%
! TCCTAGTGGTTCTATGCAAT+TGG + chr6_4:74212461-74212480 Msa0996270:CDS 40.0%
ACCAATTGCATAGAACCACT+AGG - chr6_4:74212465-74212484 None:intergenic 40.0%
TACTGTACGCAAATTGAGCA+AGG + chr6_4:74212675-74212694 Msa0996270:CDS 40.0%
CGCAAATTGAGCAAGGTTTA+TGG + chr6_4:74212682-74212701 Msa0996270:CDS 40.0%
ATCGAAATTGCGGAGCAAAT+TGG - chr6_4:74212746-74212765 None:intergenic 40.0%
TCTTGAATGAAGCAACCAGA+AGG - chr6_4:74212780-74212799 None:intergenic 40.0%
GGTCACTTGGATTGAACATT+TGG + chr6_4:74212904-74212923 Msa0996270:intron 40.0%
! ATCTATAACGGAGCTGCATT+TGG + chr6_4:74212971-74212990 Msa0996270:CDS 40.0%
! TGAAAGGCTTGCTTGTTCTA+TGG + chr6_4:74213030-74213049 Msa0996270:CDS 40.0%
! GCAATCTGAAATTGCGATTG+TGG + chr6_4:74213131-74213150 Msa0996270:intron 40.0%
AGTCTAAGCAACTGCAATTG+TGG + chr6_4:74213219-74213238 Msa0996270:intron 40.0%
AACTGCAATTGTGGTTGCAT+CGG + chr6_4:74213228-74213247 Msa0996270:intron 40.0%
GGCTTGTGATCTTAAAGTCA+TGG + chr6_4:74213368-74213387 Msa0996270:intron 40.0%
CTCATTCAAAGCTGAAAGTG+TGG - chr6_4:74213513-74213532 None:intergenic 40.0%
!! CACACTTTCAGCTTTGAATG+AGG + chr6_4:74213511-74213530 Msa0996270:CDS 40.0%
!! GTTAGGAAAAGTACTGAGCT+TGG + chr6_4:74213548-74213567 Msa0996270:CDS 40.0%
TATGTGCAGCTACTACCATT+TGG + chr6_4:74213591-74213610 Msa0996270:CDS 40.0%
GCAATGTTATAATTGTGCCG+AGG - chr6_4:74213928-74213947 None:intergenic 40.0%
AATTTGAACACGTGACCTCA+GGG - chr6_4:74213961-74213980 None:intergenic 40.0%
GAAATTAAATCCGGCGAACT+AGG - chr6_4:74214214-74214233 None:intergenic 40.0%
GATACTTCAAGAAAGCTGTG+TGG + chr6_4:74214301-74214320 Msa0996270:CDS 40.0%
!! TGAAGGTGTTACTGGAATGT+GGG - chr6_4:74214405-74214424 None:intergenic 40.0%
GAAGTGATTGTGAAACCTGA+AGG - chr6_4:74214422-74214441 None:intergenic 40.0%
GGTTTCACAATCACTTCTGA+TGG + chr6_4:74214425-74214444 Msa0996270:CDS 40.0%
CATCAACAAGCTCAAACCTA+GGG + chr6_4:74214507-74214526 Msa0996270:CDS 40.0%
GAGTCTGTTGCAACTGTTAA+TGG + chr6_4:74214614-74214633 Msa0996270:CDS 40.0%
! GAGTATCATAGTGGAGCAAG+TGG + chr6_4:74210239-74210258 Msa0996270:CDS 45.0%
GAACAGAAGGACTCAGATGA+AGG + chr6_4:74210615-74210634 Msa0996270:CDS 45.0%
TGCTGCTGTAATTGCGATTG+TGG + chr6_4:74211696-74211715 Msa0996270:intron 45.0%
ATGTGAATTGGTGCAACTGG+TGG - chr6_4:74211879-74211898 None:intergenic 45.0%
!! ATGGGAAATTTTGGTGGGCA+TGG + chr6_4:74211918-74211937 Msa0996270:CDS 45.0%
TGCAGACTAATGAGCCTCTA+TGG + chr6_4:74212096-74212115 Msa0996270:CDS 45.0%
TTGGAAATAGAGCCATCCAC+TGG - chr6_4:74212386-74212405 None:intergenic 45.0%
CAATTTGCGTACAGTAACGC+AGG - chr6_4:74212671-74212690 None:intergenic 45.0%
GGAGCAAATTGGTTGTCATG+AGG - chr6_4:74212735-74212754 None:intergenic 45.0%
! AGACGATGGCATCGAAATTG+CGG - chr6_4:74212756-74212775 None:intergenic 45.0%
CATGCCTAATGGCTATTCCA+AGG + chr6_4:74212800-74212819 Msa0996270:CDS 45.0%
! CTGCATTTGGAGCTGAAAGA+TGG + chr6_4:74212984-74213003 Msa0996270:CDS 45.0%
CTCTTCAGAGGATGTGTGAA+AGG + chr6_4:74213014-74213033 Msa0996270:CDS 45.0%
GCATGATGAAGCTAGCACAA+AGG + chr6_4:74213435-74213454 Msa0996270:CDS 45.0%
GATGAAGCTAGCACAAAGGA+TGG + chr6_4:74213439-74213458 Msa0996270:CDS 45.0%
GTGCATCAGCTAGTCATAGA+TGG + chr6_4:74213486-74213505 Msa0996270:CDS 45.0%
AGGGAGTCAGAGTTACTGTT+AGG + chr6_4:74213531-74213550 Msa0996270:CDS 45.0%
AAAACAGTTTGTGGAGGGAG+AGG - chr6_4:74213620-74213639 None:intergenic 45.0%
ATTGCTAATGGTTCACACCC+TGG + chr6_4:74213813-74213832 Msa0996270:CDS 45.0%
CAACTCCATCTCTGTGCTTA+GGG + chr6_4:74213836-74213855 Msa0996270:CDS 45.0%
TCTTACCCTAAGCACAGAGA+TGG - chr6_4:74213844-74213863 None:intergenic 45.0%
ATTGGTGAGAGGATGTTCCT+CGG + chr6_4:74213908-74213927 Msa0996270:intron 45.0%
GAATTTGAACACGTGACCTC+AGG - chr6_4:74213962-74213981 None:intergenic 45.0%
GAGGTCACGTGTTCAAATTC+TGG + chr6_4:74213962-74213981 Msa0996270:intron 45.0%
TCAAGCGGCAAACATGTACT+CGG - chr6_4:74214017-74214036 None:intergenic 45.0%
! ATAAGGAGGGCACATGTACT+CGG - chr6_4:74214096-74214115 None:intergenic 45.0%
AACGCTCACACGTATAAGGA+GGG - chr6_4:74214109-74214128 None:intergenic 45.0%
CATGAACGCTCACACGTATA+AGG - chr6_4:74214113-74214132 None:intergenic 45.0%
!! TTTTAGTTGCCCTAGTTCGC+CGG + chr6_4:74214201-74214220 Msa0996270:intron 45.0%
GAAAGCTGTGTGGATTCATC+AGG + chr6_4:74214311-74214330 Msa0996270:CDS 45.0%
!! CTGAAGGTGTTACTGGAATG+TGG - chr6_4:74214406-74214425 None:intergenic 45.0%
CACATTCCAGTAACACCTTC+AGG + chr6_4:74214404-74214423 Msa0996270:CDS 45.0%
!! GTGAAACCTGAAGGTGTTAC+TGG - chr6_4:74214413-74214432 None:intergenic 45.0%
GCATCAACAAGCTCAAACCT+AGG + chr6_4:74214506-74214525 Msa0996270:CDS 45.0%
AGCTCAAACCTAGGGAACAA+TGG + chr6_4:74214515-74214534 Msa0996270:CDS 45.0%
TCAAACCTAGGGAACAATGG+TGG + chr6_4:74214518-74214537 Msa0996270:CDS 45.0%
!!! TATTTTTTTATATTATTTTC+TGG + chr6_4:74210774-74210793 Msa0996270:intron 5.0%
!! AATTAAAAATATATTTAACT+CGG + chr6_4:74211486-74211505 Msa0996270:intron 5.0%
TCTGATTAGCAGTGTGACGG+TGG - chr6_4:74210337-74210356 None:intergenic 50.0%
GCTTTGACCATGAGGAGACT+AGG - chr6_4:74210958-74210977 None:intergenic 50.0%
AATGTGATCTGCCCCTCTTG+TGG + chr6_4:74211151-74211170 Msa0996270:CDS 50.0%
ATTGGAGGACCACCACAAGA+GGG - chr6_4:74211166-74211185 None:intergenic 50.0%
! GCGGCAAAATGTCGTTGACT+CGG + chr6_4:74211550-74211569 Msa0996270:intron 50.0%
ACTGGTGGAAGCTGTGTGAT+TGG - chr6_4:74211864-74211883 None:intergenic 50.0%
! TTTGGTGGGCATGGAATGGT+TGG + chr6_4:74211927-74211946 Msa0996270:CDS 50.0%
! GAAAGGCAAGCTGGTTGGTA+AGG - chr6_4:74212011-74212030 None:intergenic 50.0%
TGTCAGAAAGGCAAGCTGGT+TGG - chr6_4:74212016-74212035 None:intergenic 50.0%
ACCAGCTTGCCTTTCTGACA+TGG + chr6_4:74212016-74212035 Msa0996270:CDS 50.0%
TCCATGTCAGAAAGGCAAGC+TGG - chr6_4:74212020-74212039 None:intergenic 50.0%
! ATCTCTTCCGGAATGATGGG+CGG + chr6_4:74212438-74212457 Msa0996270:CDS 50.0%
AGCAACCAGAAGGAAGACGA+TGG - chr6_4:74212770-74212789 None:intergenic 50.0%
GATGGCTCACTACTCTTCAG+AGG + chr6_4:74213002-74213021 Msa0996270:CDS 50.0%
TATACCTCCACCGAGATCAC+GGG - chr6_4:74213065-74213084 None:intergenic 50.0%
GTATACCTCCACCGAGATCA+CGG - chr6_4:74213066-74213085 None:intergenic 50.0%
TTCAGCGATTCCATCACCTG+AGG + chr6_4:74213403-74213422 Msa0996270:intron 50.0%
TCAGCGATTCCATCACCTGA+GGG + chr6_4:74213404-74213423 Msa0996270:intron 50.0%
ATCATGCTGCTCTTTCCCTC+AGG - chr6_4:74213422-74213441 None:intergenic 50.0%
GCACATAGCACAACACCACT+AGG - chr6_4:74213578-74213597 None:intergenic 50.0%
GCAACTCCATCTCTGTGCTT+AGG + chr6_4:74213835-74213854 Msa0996270:CDS 50.0%
GAAACAGTCTCTCCTCTAGC+AGG + chr6_4:74213984-74214003 Msa0996270:intron 50.0%
! ATGTTTGCCGCTTGACACAG+TGG + chr6_4:74214022-74214041 Msa0996270:intron 50.0%
GTGGTCACGAGTTCAAATCC+TGG + chr6_4:74214041-74214060 Msa0996270:intron 50.0%
CTAGAGGAGAGACTGTTTCC+AGG - chr6_4:74213983-74214002 None:intergenic 50.0%
GAAACAGTCTCTCCTCTAGC+AGG + chr6_4:74213984-74214003 Msa0996270:intron 50.0%
GAACGCTCACACGTATAAGG+AGG - chr6_4:74214110-74214129 None:intergenic 50.0%
CGTGTGAGCGTTCATGTACT+CGG + chr6_4:74214117-74214136 Msa0996270:intron 50.0%
CACTTCCACCATTGTTCCCT+AGG - chr6_4:74214526-74214545 None:intergenic 50.0%
! CTAGGGAACAATGGTGGAAG+TGG + chr6_4:74214524-74214543 Msa0996270:CDS 50.0%
GTTGGGTCCTAGTCTCCTCA+TGG + chr6_4:74210948-74210967 Msa0996270:intron 55.0%
TTGGAGGACCACCACAAGAG+GGG - chr6_4:74211165-74211184 None:intergenic 55.0%
GATTGGAGGACCACCACAAG+AGG - chr6_4:74211167-74211186 None:intergenic 55.0%
ACTAGGACCGCCCATCATTC+CGG - chr6_4:74212448-74212467 None:intergenic 55.0%
CGATGCCATCGTCTTCCTTC+TGG + chr6_4:74212762-74212781 Msa0996270:CDS 55.0%
GTTTCTGCCACCCGTGATCT+CGG + chr6_4:74213052-74213071 Msa0996270:CDS 55.0%
AGACGTCGGCAACATGCTTG+TGG + chr6_4:74213174-74213193 Msa0996270:intron 55.0%
CTGCTCTTTCCCTCAGGTGA+TGG - chr6_4:74213416-74213435 None:intergenic 55.0%
ACTGAGCTTGGTCAGCCTAG+TGG + chr6_4:74213560-74213579 Msa0996270:CDS 55.0%
TGGAGGGAGAGGTAGCCAAA+TGG - chr6_4:74213609-74213628 None:intergenic 55.0%
GCACAGAGATGGAGTTGCCA+GGG - chr6_4:74213833-74213852 None:intergenic 55.0%
AGCACAGAGATGGAGTTGCC+AGG - chr6_4:74213834-74213853 None:intergenic 55.0%
CTCGGTCTTACTCCTGCTAG+AGG - chr6_4:74213999-74214018 None:intergenic 55.0%
CTCGTGACCACTGTGTCAAG+CGG - chr6_4:74214032-74214051 None:intergenic 55.0%
CTCGGTCTTTCTCCTGCTAG+AGG - chr6_4:74214078-74214097 None:intergenic 55.0%
! GGGAACAATGGTGGAAGTGG+AGG + chr6_4:74214527-74214546 Msa0996270:CDS 55.0%
GTGATCTGCCCCTCTTGTGG+TGG + chr6_4:74211154-74211173 Msa0996270:CDS 60.0%
GGTGGGCATGGAATGGTTGG+AGG + chr6_4:74211930-74211949 Msa0996270:CDS 60.0%
!! GGAATGATGGGCGGTCCTAG+TGG + chr6_4:74212447-74212466 Msa0996270:CDS 60.0%
ATTGCCGCCTTGTGACCCTG+AGG + chr6_4:74213943-74213962 Msa0996270:intron 60.0%
GTGACCTCAGGGTCACAAGG+CGG - chr6_4:74213950-74213969 None:intergenic 60.0%
CACGTGACCTCAGGGTCACA+AGG - chr6_4:74213953-74213972 None:intergenic 60.0%
AGTGGAGCAAGTGGGTCCCC+TGG + chr6_4:74210248-74210267 Msa0996270:CDS 65.0%
TCTGCCACCCGTGATCTCGG+TGG + chr6_4:74213055-74213074 Msa0996270:CDS 65.0%
ACCTCCACCGAGATCACGGG+TGG - chr6_4:74213062-74213081 None:intergenic 65.0%
GCCACCCGTGATCTCGGTGG+AGG + chr6_4:74213058-74213077 Msa0996270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 74210222 74214694 74210222 ID=Msa0996270;Name=Msa0996270
chr6_4 mRNA 74210222 74214694 74210222 ID=Msa0996270-mRNA-1;Parent=Msa0996270;Name=Msa0996270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=14|1|0.8|1|1|1|10|0|726
chr6_4 exon 74210222 74210372 74210222 ID=Msa0996270-mRNA-1:exon:13863;Parent=Msa0996270-mRNA-1
chr6_4 exon 74210519 74210636 74210519 ID=Msa0996270-mRNA-1:exon:13864;Parent=Msa0996270-mRNA-1
chr6_4 exon 74211061 74211249 74211061 ID=Msa0996270-mRNA-1:exon:13865;Parent=Msa0996270-mRNA-1
chr6_4 exon 74211819 74212289 74211819 ID=Msa0996270-mRNA-1:exon:13866;Parent=Msa0996270-mRNA-1
chr6_4 exon 74212381 74212482 74212381 ID=Msa0996270-mRNA-1:exon:13867;Parent=Msa0996270-mRNA-1
chr6_4 exon 74212612 74212821 74212612 ID=Msa0996270-mRNA-1:exon:13868;Parent=Msa0996270-mRNA-1
chr6_4 exon 74212905 74213079 74212905 ID=Msa0996270-mRNA-1:exon:13869;Parent=Msa0996270-mRNA-1
chr6_4 exon 74213408 74213673 74213408 ID=Msa0996270-mRNA-1:exon:13870;Parent=Msa0996270-mRNA-1
chr6_4 exon 74213768 74213857 74213768 ID=Msa0996270-mRNA-1:exon:13871;Parent=Msa0996270-mRNA-1
chr6_4 exon 74214272 74214694 74214272 ID=Msa0996270-mRNA-1:exon:13872;Parent=Msa0996270-mRNA-1
chr6_4 five_prime_UTR 74210222 74210235 74210222 ID=Msa0996270-mRNA-1:five_prime_utr;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74210236 74210372 74210236 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74210519 74210636 74210519 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74211061 74211249 74211061 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74211819 74212289 74211819 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74212381 74212482 74212381 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74212612 74212821 74212612 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74212905 74213079 74212905 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74213408 74213673 74213408 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74213768 74213857 74213768 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
chr6_4 CDS 74214272 74214694 74214272 ID=Msa0996270-mRNA-1:cds;Parent=Msa0996270-mRNA-1
Gene Sequence

>Msa0996270

ATGGAGTATCATAGTGGAGCAAGTGGGTCCCCTGGTGATCATCATCATCATCATCACCATGAAGGTTCTTCTGATTCTCAGAGAAGAAAGAAACGTTACCACCGTCACACTGCTAATCAGATTCAAAGGCTTGAAGCTATGTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGCAGTTAAGCAGAGAATTAGCTTTGGCTCCTAGACAGATCAAATTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAGCATGAAAGAGCTGATAACTGTCAACTAAGGCAAGAGAATGATAAAATAAGATGTGAGAATATAGCTATAAGGGAAGCCCTTAAAAATGTGATCTGCCCCTCTTGTGGTGGTCCTCCAATCAATGATGATTGTTTCTTTGATGAACAAAAGCTGAGAATTGAAAATGTGCAACTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCTGCCAAATACATTGGAAGACCAATCACACAGCTTCCACCAGTTGCACCAATTCACATTTCATCATTGGACTTATCAATGGGAAATTTTGGTGGGCATGGAATGGTTGGAGGACCTTCACTTGATCTTGATCTTCTACCTGGAAGTTCATCAACTATGCAGAATATTCCTTACCAACCAGCTTGCCTTTCTGACATGGAAAAATCTCTCATGTCTGACATTGCATCAAATGCAATGGAAGAGATGATTAGGCTTTTGCAGACTAATGAGCCTCTATGGATGAAATCAAACTCTGATGGTAAAGATGTTCTTAATCTTGAAAACTATGAGAGGATGTTCCCTAAGACTAATAATCGGTTGAAGAATCCGAATATTCGCATTGAAGCTTCGAGGGATTCTCGTGTTGTTATCATGAATGGCTTAGCTTTGGTTGAAATGTTTATGGATCCAAACCAGTGGATGGCTCTATTTCCAACTATTGTGACAATGGCAAGGACTATTGAAGTTATCTCTTCCGGAATGATGGGCGGTCCTAGTGGTTCTATGCAATTGATGTATGAAGAGTTGCAAATGCTGTCACCACTTGTTCCTATCAGAGAATTTTATTTCCTGCGTTACTGTACGCAAATTGAGCAAGGTTTATGGGCAATTGTTGATGTTTCCTATGATTTTCCTCATGACAACCAATTTGCTCCGCAATTTCGATGCCATCGTCTTCCTTCTGGTTGCTTCATTCAAGACATGCCTAATGGCTATTCCAAGGTCACTTGGATTGAACATTTGGAGATTGAAGACAAAAATCCAGTTCATAGGCTTTATAGAAATGCTATCTATAACGGAGCTGCATTTGGAGCTGAAAGATGGCTCACTACTCTTCAGAGGATGTGTGAAAGGCTTGCTTGTTCTATGGTTTCTGCCACCCGTGATCTCGGTGGAGCGATTCCATCACCTGAGGGAAAGAGCAGCATGATGAAGCTAGCACAAAGGATGGTAACAAATTTCTGTGCAAGCATAAGTGCATCAGCTAGTCATAGATGGACCACACTTTCAGCTTTGAATGAGGGAGTCAGAGTTACTGTTAGGAAAAGTACTGAGCTTGGTCAGCCTAGTGGTGTTGTGCTATGTGCAGCTACTACCATTTGGCTACCTCTCCCTCCACAAACTGTTTTCAATTTCTTCAAAGATGAAAGGAAAAGATCACAGTGGGATGTTCTTTCTAATGGGAATGCTGTCCAAGAAGTTGCTCATATTGCTAATGGTTCACACCCTGGCAACTCCATCTCTGTGCTTAGGGCTTTCAACACAAGTCAAAACAACATGTTGATACTTCAAGAAAGCTGTGTGGATTCATCAGGTTCAATTGTAGTCTATTGTCCAATTGAATTAACATCAATGAATGTAGCAATGAGTGGTGAAGACACTTCCCACATTCCAGTAACACCTTCAGGTTTCACAATCACTTCTGATGGAAACACACTTGATAACAATAACAATCTTCAAGGAAGTGGTAATGTTAATGCTGATGGAGCATCAACAAGCTCAAACCTAGGGAACAATGGTGGAAGTGGAGGATCATTGATAACAGTTGCATTCCAAATAATGGTTAGTAGTTTACCATCTGCTAAACTTAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGTGAGACTGTCCAACACATCAAAGCTGCTTTAAATTGCCCTAGTTCTTGA
Protein sequence

>Msa0996270

MEYHSGASGSPGDHHHHHHHEGSSDSQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCQLRQENDKIRCENIAIREALKNVICPSCGGPPINDDCFFDEQKLRIENVQLKEELDRVSSIAAKYIGRPITQLPPVAPIHISSLDLSMGNFGGHGMVGGPSLDLDLLPGSSSTMQNIPYQPACLSDMEKSLMSDIASNAMEEMIRLLQTNEPLWMKSNSDGKDVLNLENYERMFPKTNNRLKNPNIRIEASRDSRVVIMNGLALVEMFMDPNQWMALFPTIVTMARTIEVISSGMMGGPSGSMQLMYEELQMLSPLVPIREFYFLRYCTQIEQGLWAIVDVSYDFPHDNQFAPQFRCHRLPSGCFIQDMPNGYSKVTWIEHLEIEDKNPVHRLYRNAIYNGAAFGAERWLTTLQRMCERLACSMVSATRDLGGAIPSPEGKSSMMKLAQRMVTNFCASISASASHRWTTLSALNEGVRVTVRKSTELGQPSGVVLCAATTIWLPLPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNSISVLRAFNTSQNNMLILQESCVDSSGSIVVYCPIELTSMNVAMSGEDTSHIPVTPSGFTITSDGNTLDNNNNLQGSGNVNADGASTSSNLGNNGGSGGSLITVAFQIMVSSLPSAKLNMESVATVNGLIGETVQHIKAALNCPSS*