Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999360 | XP_039690907.1 | 57.778 | 90 | 26 | 1 | 39 | 128 | 43 | 120 | 6.78e-20 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999360 | A0A072TDK6 | 57.500 | 80 | 22 | 1 | 38 | 117 | 42 | 109 | 2.37e-16 | 81.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0999360 | 0.867344 | 1.467081e-65 | -8.615850e-47 |
| Msa0006980 | Msa0999360 | 0.801266 | 9.766248e-49 | -8.615850e-47 |
| Msa0015710 | Msa0999360 | 0.822791 | 1.960588e-53 | -8.615850e-47 |
| Msa0016120 | Msa0999360 | 0.819167 | 1.339039e-52 | -8.615850e-47 |
| Msa0017510 | Msa0999360 | 0.805428 | 1.341162e-49 | -8.615850e-47 |
| Msa0022640 | Msa0999360 | 0.827187 | 1.796709e-54 | -8.615850e-47 |
| Msa0050040 | Msa0999360 | 0.815913 | 7.246760e-52 | -8.615850e-47 |
| Msa0055450 | Msa0999360 | 0.821376 | 4.172154e-53 | -8.615850e-47 |
| Msa0080990 | Msa0999360 | 0.811488 | 6.828767e-51 | -8.615850e-47 |
| Msa0084500 | Msa0999360 | 0.805929 | 1.052848e-49 | -8.615850e-47 |
| Msa0102990 | Msa0999360 | 0.815520 | 8.863760e-52 | -8.615850e-47 |
| Msa0104500 | Msa0999360 | 0.800611 | 1.328820e-48 | -8.615850e-47 |
| Msa0106790 | Msa0999360 | 0.850999 | 1.180707e-60 | -8.615850e-47 |
| Msa0118400 | Msa0999360 | 0.836992 | 6.759192e-57 | -8.615850e-47 |
| Msa0639460 | Msa0999360 | 0.810655 | 1.034498e-50 | -8.615850e-47 |
| Msa0641250 | Msa0999360 | 0.812825 | 3.488970e-51 | -8.615850e-47 |
| Msa0641360 | Msa0999360 | 0.815189 | 1.050349e-51 | -8.615850e-47 |
| Msa0657970 | Msa0999360 | 0.812826 | 3.487688e-51 | -8.615850e-47 |
| Msa0663680 | Msa0999360 | 0.803508 | 3.370953e-49 | -8.615850e-47 |
| Msa0667850 | Msa0999360 | 0.817969 | 2.502278e-52 | -8.615850e-47 |
| Msa0669840 | Msa0999360 | 0.860337 | 2.216760e-63 | -8.615850e-47 |
| Msa0682360 | Msa0999360 | 0.822050 | 2.915038e-53 | -8.615850e-47 |
| Msa0682530 | Msa0999360 | 0.847816 | 9.102267e-60 | -8.615850e-47 |
| Msa0707220 | Msa0999360 | 0.803630 | 3.181167e-49 | -8.615850e-47 |
| Msa0739580 | Msa0999360 | 0.834980 | 2.189274e-56 | -8.615850e-47 |
| Msa0748000 | Msa0999360 | 0.808404 | 3.148892e-50 | -8.615850e-47 |
| Msa0764820 | Msa0999360 | 0.812687 | 3.740119e-51 | -8.615850e-47 |
| Msa0782360 | Msa0999360 | 0.829858 | 4.069365e-55 | -8.615850e-47 |
| Msa0786040 | Msa0999360 | 0.829836 | 4.119658e-55 | -8.615850e-47 |
| Msa0823400 | Msa0999360 | 0.819113 | 1.377066e-52 | -8.615850e-47 |
| Msa0828830 | Msa0999360 | 0.801298 | 9.617387e-49 | -8.615850e-47 |
| Msa0840500 | Msa0999360 | 0.801240 | 9.886003e-49 | -8.615850e-47 |
| Msa0124130 | Msa0999360 | 0.810377 | 1.188111e-50 | -8.615850e-47 |
| Msa0130570 | Msa0999360 | 0.821233 | 4.502183e-53 | -8.615850e-47 |
| Msa0141600 | Msa0999360 | 0.817653 | 2.949725e-52 | -8.615850e-47 |
| Msa0147600 | Msa0999360 | 0.803357 | 3.622943e-49 | -8.615850e-47 |
| Msa0149140 | Msa0999360 | 0.817991 | 2.474107e-52 | -8.615850e-47 |
| Msa0152480 | Msa0999360 | 0.805484 | 1.305858e-49 | -8.615850e-47 |
| Msa0152500 | Msa0999360 | 0.814581 | 1.432514e-51 | -8.615850e-47 |
| Msa0153420 | Msa0999360 | 0.847873 | 8.779238e-60 | -8.615850e-47 |
| Msa0156250 | Msa0999360 | 0.808885 | 2.486199e-50 | -8.615850e-47 |
| Msa0157290 | Msa0999360 | 0.805764 | 1.140335e-49 | -8.615850e-47 |
| Msa0161680 | Msa0999360 | 0.836368 | 9.751138e-57 | -8.615850e-47 |
| Msa0173990 | Msa0999360 | 0.804280 | 2.329987e-49 | -8.615850e-47 |
| Msa0176470 | Msa0999360 | 0.816391 | 5.666857e-52 | -8.615850e-47 |
| Msa0185490 | Msa0999360 | 0.806429 | 8.259890e-50 | -8.615850e-47 |
| Msa0194380 | Msa0999360 | 0.832195 | 1.085987e-55 | -8.615850e-47 |
| Msa0203030 | Msa0999360 | 0.846146 | 2.609259e-59 | -8.615850e-47 |
| Msa0212150 | Msa0999360 | 0.850839 | 1.309598e-60 | -8.615850e-47 |
| Msa0219190 | Msa0999360 | 0.836415 | 9.485414e-57 | -8.615850e-47 |
| Msa0221290 | Msa0999360 | 0.819053 | 1.421455e-52 | -8.615850e-47 |
| Msa0236110 | Msa0999360 | 0.819890 | 9.159482e-53 | -8.615850e-47 |
| Msa0373960 | Msa0999360 | 0.850234 | 1.937009e-60 | -8.615850e-47 |
| Msa0378500 | Msa0999360 | 0.803661 | 3.134512e-49 | -8.615850e-47 |
| Msa0392420 | Msa0999360 | 0.814982 | 1.167637e-51 | -8.615850e-47 |
| Msa0392460 | Msa0999360 | 0.803306 | 3.713368e-49 | -8.615850e-47 |
| Msa0406000 | Msa0999360 | 0.849556 | 2.997951e-60 | -8.615850e-47 |
| Msa0417440 | Msa0999360 | 0.804209 | 2.411005e-49 | -8.615850e-47 |
| Msa0423100 | Msa0999360 | 0.842422 | 2.611215e-58 | -8.615850e-47 |
| Msa0424330 | Msa0999360 | 0.817309 | 3.525811e-52 | -8.615850e-47 |
| Msa0424340 | Msa0999360 | 0.824556 | 7.571594e-54 | -8.615850e-47 |
| Msa0436500 | Msa0999360 | 0.833117 | 6.411964e-56 | -8.615850e-47 |
| Msa0451400 | Msa0999360 | 0.858006 | 1.107354e-62 | -8.615850e-47 |
| Msa0469260 | Msa0999360 | 0.843080 | 1.746076e-58 | -8.615850e-47 |
| Msa0986030 | Msa0999360 | 0.837626 | 4.651489e-57 | -8.615850e-47 |
| Msa0996270 | Msa0999360 | 0.808964 | 2.390970e-50 | -8.615850e-47 |
| Msa0999300 | Msa0999360 | 0.844037 | 9.686691e-59 | -8.615850e-47 |
| Msa0999340 | Msa0999360 | 0.890723 | 7.611706e-74 | -8.615850e-47 |
| Msa0999350 | Msa0999360 | 0.919198 | 6.074946e-87 | -8.615850e-47 |
| Msa0999360 | Msa0999390 | 0.873198 | 1.770113e-67 | -8.615850e-47 |
| Msa0999360 | Msa0999400 | 0.913847 | 3.825598e-84 | -8.615850e-47 |
| Msa0999360 | Msa0999410 | 0.983634 | 2.780810e-158 | -8.615850e-47 |
| Msa0999360 | Msa0999700 | 0.844516 | 7.203249e-59 | -8.615850e-47 |
| Msa0999360 | Msa1001890 | 0.818908 | 1.533251e-52 | -8.615850e-47 |
| Msa0999360 | Msa1010110 | 0.805116 | 1.559402e-49 | -8.615850e-47 |
| Msa0999360 | Msa1021750 | 0.811310 | 7.464722e-51 | -8.615850e-47 |
| Msa0999360 | Msa1034680 | 0.830920 | 2.238220e-55 | -8.615850e-47 |
| Msa0999360 | Msa1037890 | 0.819136 | 1.360516e-52 | -8.615850e-47 |
| Msa0999360 | Msa1037900 | 0.815549 | 8.735562e-52 | -8.615850e-47 |
| Msa0999360 | Msa1042670 | 0.800202 | 1.609844e-48 | -8.615850e-47 |
| Msa0999360 | Msa1060580 | 0.817368 | 3.419555e-52 | -8.615850e-47 |
| Msa0999360 | Msa1073340 | 0.812971 | 3.241515e-51 | -8.615850e-47 |
| Msa0999360 | Msa1081570 | 0.805177 | 1.513757e-49 | -8.615850e-47 |
| Msa0999360 | Msa1084520 | 0.816105 | 6.563194e-52 | -8.615850e-47 |
| Msa0999360 | Msa1092020 | 0.807181 | 5.731096e-50 | -8.615850e-47 |
| Msa0999360 | Msa1096210 | 0.814298 | 1.654714e-51 | -8.615850e-47 |
| Msa0999360 | Msa1105890 | 0.833330 | 5.673042e-56 | -8.615850e-47 |
| Msa0999360 | Msa1125810 | 0.802971 | 4.354738e-49 | -8.615850e-47 |
| Msa0999360 | Msa1127140 | 0.801959 | 7.040127e-49 | -8.615850e-47 |
| Msa0999360 | Msa1135380 | 0.808661 | 2.775751e-50 | -8.615850e-47 |
| Msa0999360 | Msa1145020 | 0.850877 | 1.277675e-60 | -8.615850e-47 |
| Msa0999360 | Msa1171310 | 0.807237 | 5.576725e-50 | -8.615850e-47 |
| Msa0999360 | Msa1179280 | 0.802030 | 6.807671e-49 | -8.615850e-47 |
| Msa0999360 | Msa1200440 | 0.813882 | 2.044119e-51 | -8.615850e-47 |
| Msa0999360 | Msa1201110 | 0.827505 | 1.507471e-54 | -8.615850e-47 |
| Msa0999360 | Msa1201160 | 0.836769 | 7.708175e-57 | -8.615850e-47 |
| Msa0999360 | Msa1228190 | 0.887052 | 2.001473e-72 | -8.615850e-47 |
| Msa0999360 | Msa1228610 | 0.803163 | 3.974707e-49 | -8.615850e-47 |
| Msa0999360 | Msa1233560 | 0.813138 | 2.979566e-51 | -8.615850e-47 |
| Msa0999360 | Msa1243020 | 0.801482 | 8.820508e-49 | -8.615850e-47 |
| Msa0999360 | Msa1248040 | 0.817150 | 3.828987e-52 | -8.615850e-47 |
| Msa0999360 | Msa1271260 | 0.882127 | 1.351918e-70 | -8.615850e-47 |
| Msa0999360 | Msa1292010 | 0.802530 | 5.370184e-49 | -8.615850e-47 |
| Msa0999360 | Msa1292040 | 0.805996 | 1.019350e-49 | -8.615850e-47 |
| Msa0999360 | Msa1294290 | 0.826947 | 2.050462e-54 | -8.615850e-47 |
| Msa0999360 | Msa1305510 | 0.853213 | 2.771648e-61 | -8.615850e-47 |
| Msa0999360 | Msa1316540 | 0.804245 | 2.369142e-49 | -8.615850e-47 |
| Msa0999360 | Msa1339440 | 0.847003 | 1.522280e-59 | -8.615850e-47 |
| Msa0999360 | Msa1345420 | 0.804516 | 2.080469e-49 | -8.615850e-47 |
| Msa0999360 | Msa1378770 | 0.820017 | 8.565052e-53 | -8.615850e-47 |
| Msa0999360 | Msa1379970 | 0.856706 | 2.683569e-62 | -8.615850e-47 |
| Msa0999360 | Msa1389050 | 0.857560 | 1.501652e-62 | -8.615850e-47 |
| Msa0999360 | Msa1394890 | 0.829701 | 4.441560e-55 | -8.615850e-47 |
| Msa0999360 | Msa1406780 | 0.817896 | 2.599459e-52 | -8.615850e-47 |
| Msa0999360 | Msa1420060 | 0.841236 | 5.369754e-58 | -8.615850e-47 |
| Msa0999360 | Msa1421550 | 0.838475 | 2.813039e-57 | -8.615850e-47 |
| Msa0999360 | Msa1423460 | 0.809548 | 1.791686e-50 | -8.615850e-47 |
| Msa0999360 | Msa1424690 | 0.838193 | 3.325125e-57 | -8.615850e-47 |
| Msa0999360 | Msa1431850 | 0.827884 | 1.222683e-54 | -8.615850e-47 |
| Msa0999360 | Msa1435480 | 0.857471 | 1.596438e-62 | -8.615850e-47 |
| Msa0999360 | Msa1449940 | 0.825561 | 4.382906e-54 | -8.615850e-47 |
| Msa0999360 | Msa1458910 | 0.834258 | 3.324782e-56 | -8.615850e-47 |
| Msa0999360 | Msa1459530 | 0.818287 | 2.120515e-52 | -8.615850e-47 |
| Msa0999360 | Msa1462530 | 0.801952 | 7.062987e-49 | -8.615850e-47 |
| Msa0252770 | Msa0999360 | 0.870076 | 1.916795e-66 | -8.615850e-47 |
| Msa0273990 | Msa0999360 | 0.804816 | 1.801199e-49 | -8.615850e-47 |
| Msa0289920 | Msa0999360 | 0.829068 | 6.330172e-55 | -8.615850e-47 |
| Msa0298240 | Msa0999360 | 0.835853 | 1.317655e-56 | -8.615850e-47 |
| Msa0306120 | Msa0999360 | 0.831352 | 1.752645e-55 | -8.615850e-47 |
| Msa0314630 | Msa0999360 | 0.827813 | 1.271674e-54 | -8.615850e-47 |
| Msa0322830 | Msa0999360 | 0.859029 | 5.486869e-63 | -8.615850e-47 |
| Msa0322840 | Msa0999360 | 0.872575 | 2.862035e-67 | -8.615850e-47 |
| Msa0322860 | Msa0999360 | 0.854088 | 1.553681e-61 | -8.615850e-47 |
| Msa0323610 | Msa0999360 | 0.816595 | 5.100658e-52 | -8.615850e-47 |
| Msa0329620 | Msa0999360 | 0.871637 | 5.869950e-67 | -8.615850e-47 |
| Msa0331540 | Msa0999360 | 0.808026 | 3.791634e-50 | -8.615850e-47 |
| Msa0351770 | Msa0999360 | 0.835601 | 1.525783e-56 | -8.615850e-47 |
| Msa0359250 | Msa0999360 | 0.843202 | 1.620092e-58 | -8.615850e-47 |
| Msa0487570 | Msa0999360 | 0.819388 | 1.192433e-52 | -8.615850e-47 |
| Msa0487630 | Msa0999360 | 0.800987 | 1.113553e-48 | -8.615850e-47 |
| Msa0492190 | Msa0999360 | 0.833907 | 4.072807e-56 | -8.615850e-47 |
| Msa0515950 | Msa0999360 | 0.806771 | 6.995011e-50 | -8.615850e-47 |
| Msa0520510 | Msa0999360 | 0.822041 | 2.928348e-53 | -8.615850e-47 |
| Msa0533080 | Msa0999360 | 0.807585 | 4.703159e-50 | -8.615850e-47 |
| Msa0534930 | Msa0999360 | 0.820292 | 7.406983e-53 | -8.615850e-47 |
| Msa0535040 | Msa0999360 | 0.837746 | 4.332768e-57 | -8.615850e-47 |
| Msa0537920 | Msa0999360 | 0.804864 | 1.760669e-49 | -8.615850e-47 |
| Msa0538220 | Msa0999360 | 0.800207 | 1.606258e-48 | -8.615850e-47 |
| Msa0575740 | Msa0999360 | 0.826383 | 2.795505e-54 | -8.615850e-47 |
| Msa0591790 | Msa0999360 | 0.833014 | 6.802047e-56 | -8.615850e-47 |
| Msa0591800 | Msa0999360 | 0.820796 | 5.675434e-53 | -8.615850e-47 |
| Msa0594090 | Msa0999360 | 0.818035 | 2.418555e-52 | -8.615850e-47 |
| Msa0843640 | Msa0999360 | 0.816882 | 4.397042e-52 | -8.615850e-47 |
| Msa0844560 | Msa0999360 | 0.807938 | 3.958485e-50 | -8.615850e-47 |
| Msa0845940 | Msa0999360 | 0.818823 | 1.602702e-52 | -8.615850e-47 |
| Msa0858840 | Msa0999360 | 0.819669 | 1.028850e-52 | -8.615850e-47 |
| Msa0860280 | Msa0999360 | 0.838532 | 2.719268e-57 | -8.615850e-47 |
| Msa0862310 | Msa0999360 | 0.818105 | 2.331360e-52 | -8.615850e-47 |
| Msa0867350 | Msa0999360 | 0.817206 | 3.719039e-52 | -8.615850e-47 |
| Msa0880140 | Msa0999360 | 0.807892 | 4.048763e-50 | -8.615850e-47 |
| Msa0885060 | Msa0999360 | 0.845107 | 4.990310e-59 | -8.615850e-47 |
| Msa0898730 | Msa0999360 | 0.806215 | 9.164210e-50 | -8.615850e-47 |
| Msa0899950 | Msa0999360 | 0.846605 | 1.955488e-59 | -8.615850e-47 |
| Msa0927120 | Msa0999360 | 0.820133 | 8.058920e-53 | -8.615850e-47 |
| Msa0929870 | Msa0999360 | 0.813665 | 2.281776e-51 | -8.615850e-47 |
| Msa0944760 | Msa0999360 | 0.809931 | 1.482498e-50 | -8.615850e-47 |
| Msa0965310 | Msa0999360 | 0.849682 | 2.763958e-60 | -8.615850e-47 |
| Msa0973250 | Msa0999360 | 0.810136 | 1.339212e-50 | -8.615850e-47 |
| Msa0979510 | Msa0999360 | 0.805992 | 1.021424e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999360 | MtrunA17_Chr6g0485551 | 57.500 | 80 | 22 | 1 | 38 | 117 | 42 | 109 | 4.56e-20 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAACCATTTGATCATAAA+AGG | 0.244028 | 6_4:-81298965 | None:intergenic |
| TCGGACTTTCAAGTTCTTTA+CGG | 0.318095 | 6_4:-81299203 | None:intergenic |
| GACAGTCATTTGTGGAAGAT+TGG | 0.366580 | 6_4:-81298715 | None:intergenic |
| ACAGTCATTTGTGGAAGATT+GGG | 0.381276 | 6_4:-81298714 | None:intergenic |
| AGGCTAAAATGTGCGTGGTT+TGG | 0.425751 | 6_4:+81299147 | Msa0999360:CDS |
| CGGAAGCTGAAATTCGAAAG+TGG | 0.452981 | 6_4:+81299280 | Msa0999360:CDS |
| CTCTAAACCAGCAGTTGTTT+AGG | 0.457152 | 6_4:+81299127 | Msa0999360:intron |
| TTCTTCTCGACAGTCATTTG+TGG | 0.465053 | 6_4:-81298723 | None:intergenic |
| TGGTGATTTAAATCAGCATC+CGG | 0.494036 | 6_4:-81299012 | None:intergenic |
| CGAAAGTGGGCAGCTAAAGT+TGG | 0.498146 | 6_4:+81299294 | Msa0999360:CDS |
| AGCTAAAGTTGGAAAGCAGC+AGG | 0.505164 | 6_4:+81299305 | Msa0999360:CDS |
| CAGTCATTTGTGGAAGATTG+GGG | 0.526783 | 6_4:-81298713 | None:intergenic |
| TGGCAAGGCTCATTATAAAG+AGG | 0.544099 | 6_4:+81299167 | Msa0999360:CDS |
| TCGTAGTTGCATGAATAAGC+CGG | 0.600958 | 6_4:+81298993 | Msa0999360:CDS |
| GGATGCTGATTTAAATCACC+AGG | 0.601696 | 6_4:+81299014 | Msa0999360:CDS |
| CATCACATGTTACACAGACA+CGG | 0.608031 | 6_4:+81298173 | Msa0999360:CDS |
| AAAATGTGCGTGGTTTGGCA+AGG | 0.609174 | 6_4:+81299152 | Msa0999360:CDS |
| GGAAGCTGAAATTCGAAAGT+GGG | 0.616430 | 6_4:+81299281 | Msa0999360:CDS |
| CAAGGCTCATTATAAAGAGG+AGG | 0.629971 | 6_4:+81299170 | Msa0999360:CDS |
| TGTTTAGGCTAAAATGTGCG+TGG | 0.663685 | 6_4:+81299142 | Msa0999360:CDS |
| AGTCATTTGTGGAAGATTGG+GGG | 0.693821 | 6_4:-81298712 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATAGAAAATTAATATTAA+AGG | - | chr6_4:81298923-81298942 | None:intergenic | 10.0% |
| !!! | TTCTTTTTAATTTTCTTTTT+CGG | - | chr6_4:81299225-81299244 | None:intergenic | 10.0% |
| !! | GTATAGAAAATTAATATTAA+AGG | - | chr6_4:81298923-81298942 | None:intergenic | 10.0% |
| !!! | TTCTTTTTAATTTTCTTTTT+CGG | - | chr6_4:81299225-81299244 | None:intergenic | 10.0% |
| !! | GAAAAAGAAAATTAAAAAGA+AGG | + | chr6_4:81299224-81299243 | Msa0999360:CDS | 15.0% |
| !! | GAAAAAGAAAATTAAAAAGA+AGG | + | chr6_4:81299224-81299243 | Msa0999360:CDS | 15.0% |
| !! | TTAATATTAAAGGGCTAAAA+CGG | - | chr6_4:81298913-81298932 | None:intergenic | 20.0% |
| !! | GAAAAAGAAAATTAAGAAGA+CGG | + | chr6_4:81299260-81299279 | Msa0999360:CDS | 20.0% |
| !! | TTAATATTAAAGGGCTAAAA+CGG | - | chr6_4:81298913-81298932 | None:intergenic | 20.0% |
| !! | GAAAAAGAAAATTAAGAAGA+CGG | + | chr6_4:81299260-81299279 | Msa0999360:CDS | 20.0% |
| ! | GAAATCAATCATAGATTCAA+AGG | - | chr6_4:81298476-81298495 | None:intergenic | 25.0% |
| ! | GATGATAACAATCATAAAAG+AGG | - | chr6_4:81298631-81298650 | None:intergenic | 25.0% |
| !! | TATTAATTTTCTATACCTGC+AGG | + | chr6_4:81298927-81298946 | Msa0999360:intron | 25.0% |
| !! | TGATTCCTTTTATGATCAAA+TGG | + | chr6_4:81298960-81298979 | Msa0999360:CDS | 25.0% |
| ! | ATCAACCATTTGATCATAAA+AGG | - | chr6_4:81298968-81298987 | None:intergenic | 25.0% |
| ! | GAAATCAATCATAGATTCAA+AGG | - | chr6_4:81298476-81298495 | None:intergenic | 25.0% |
| ! | GATGATAACAATCATAAAAG+AGG | - | chr6_4:81298631-81298650 | None:intergenic | 25.0% |
| !! | TATTAATTTTCTATACCTGC+AGG | + | chr6_4:81298927-81298946 | Msa0999360:intron | 25.0% |
| !! | TGATTCCTTTTATGATCAAA+TGG | + | chr6_4:81298960-81298979 | Msa0999360:CDS | 25.0% |
| ! | ATCAACCATTTGATCATAAA+AGG | - | chr6_4:81298968-81298987 | None:intergenic | 25.0% |
| !!! | GAAGATGATGATTTTTTCTG+TGG | + | chr6_4:81298211-81298230 | Msa0999360:CDS | 30.0% |
| !!! | ATTTTTTCTGTGGAAGAAAG+TGG | + | chr6_4:81298221-81298240 | Msa0999360:intron | 30.0% |
| TATGATAAACCAATTCAACG+TGG | + | chr6_4:81298295-81298314 | Msa0999360:intron | 30.0% | |
| AGGATCAAAGTGATTAAAGT+AGG | + | chr6_4:81298378-81298397 | Msa0999360:intron | 30.0% | |
| ATTCGAATATTCTTGCATTC+AGG | + | chr6_4:81298507-81298526 | Msa0999360:intron | 30.0% | |
| TTCGAATATTCTTGCATTCA+GGG | + | chr6_4:81298508-81298527 | Msa0999360:intron | 30.0% | |
| ! | ATTTTTGATGAGAAGTTTGC+CGG | - | chr6_4:81298817-81298836 | None:intergenic | 30.0% |
| TCAAAAATGATAGAGATCAG+CGG | + | chr6_4:81298829-81298848 | Msa0999360:intron | 30.0% | |
| !! | TTCAAGTTCTTTACGGTTTT+CGG | - | chr6_4:81299199-81299218 | None:intergenic | 30.0% |
| !!! | GAAGATGATGATTTTTTCTG+TGG | + | chr6_4:81298211-81298230 | Msa0999360:CDS | 30.0% |
| !!! | ATTTTTTCTGTGGAAGAAAG+TGG | + | chr6_4:81298221-81298240 | Msa0999360:intron | 30.0% |
| TATGATAAACCAATTCAACG+TGG | + | chr6_4:81298295-81298314 | Msa0999360:intron | 30.0% | |
| AGGATCAAAGTGATTAAAGT+AGG | + | chr6_4:81298378-81298397 | Msa0999360:intron | 30.0% | |
| ATTCGAATATTCTTGCATTC+AGG | + | chr6_4:81298507-81298526 | Msa0999360:intron | 30.0% | |
| TTCGAATATTCTTGCATTCA+GGG | + | chr6_4:81298508-81298527 | Msa0999360:intron | 30.0% | |
| ! | ATTTTTGATGAGAAGTTTGC+CGG | - | chr6_4:81298817-81298836 | None:intergenic | 30.0% |
| TCAAAAATGATAGAGATCAG+CGG | + | chr6_4:81298829-81298848 | Msa0999360:intron | 30.0% | |
| !! | TTCAAGTTCTTTACGGTTTT+CGG | - | chr6_4:81299199-81299218 | None:intergenic | 30.0% |
| TCGAATATTCTTGCATTCAG+GGG | + | chr6_4:81298509-81298528 | Msa0999360:intron | 35.0% | |
| AATGCTTCTTCTCTAGTCTA+GGG | + | chr6_4:81298556-81298575 | Msa0999360:intron | 35.0% | |
| ACAGTCATTTGTGGAAGATT+GGG | - | chr6_4:81298717-81298736 | None:intergenic | 35.0% | |
| AGAAATCTAAGCCAACTACT+TGG | + | chr6_4:81298742-81298761 | Msa0999360:intron | 35.0% | |
| ! | CTCTTTTTGCCAGTATATGA+GGG | - | chr6_4:81298780-81298799 | None:intergenic | 35.0% |
| ! | TCTCTTTTTGCCAGTATATG+AGG | - | chr6_4:81298781-81298800 | None:intergenic | 35.0% |
| TATACTGGCAAAAAGAGATC+TGG | + | chr6_4:81298783-81298802 | Msa0999360:intron | 35.0% | |
| ATACTGGCAAAAAGAGATCT+GGG | + | chr6_4:81298784-81298803 | Msa0999360:intron | 35.0% | |
| CAAAAATGATAGAGATCAGC+GGG | + | chr6_4:81298830-81298849 | Msa0999360:intron | 35.0% | |
| TGGTGATTTAAATCAGCATC+CGG | - | chr6_4:81299015-81299034 | None:intergenic | 35.0% | |
| TTGTTCGAAAAAAACTTGCC+TGG | - | chr6_4:81299035-81299054 | None:intergenic | 35.0% | |
| !! | ATTTTAGCCTAAACAACTGC+TGG | - | chr6_4:81299137-81299156 | None:intergenic | 35.0% |
| !! | TCGGACTTTCAAGTTCTTTA+CGG | - | chr6_4:81299206-81299225 | None:intergenic | 35.0% |
| TCGAATATTCTTGCATTCAG+GGG | + | chr6_4:81298509-81298528 | Msa0999360:intron | 35.0% | |
| AATGCTTCTTCTCTAGTCTA+GGG | + | chr6_4:81298556-81298575 | Msa0999360:intron | 35.0% | |
| ACAGTCATTTGTGGAAGATT+GGG | - | chr6_4:81298717-81298736 | None:intergenic | 35.0% | |
| AGAAATCTAAGCCAACTACT+TGG | + | chr6_4:81298742-81298761 | Msa0999360:intron | 35.0% | |
| ! | CTCTTTTTGCCAGTATATGA+GGG | - | chr6_4:81298780-81298799 | None:intergenic | 35.0% |
| ! | TCTCTTTTTGCCAGTATATG+AGG | - | chr6_4:81298781-81298800 | None:intergenic | 35.0% |
| TATACTGGCAAAAAGAGATC+TGG | + | chr6_4:81298783-81298802 | Msa0999360:intron | 35.0% | |
| ATACTGGCAAAAAGAGATCT+GGG | + | chr6_4:81298784-81298803 | Msa0999360:intron | 35.0% | |
| CAAAAATGATAGAGATCAGC+GGG | + | chr6_4:81298830-81298849 | Msa0999360:intron | 35.0% | |
| TGGTGATTTAAATCAGCATC+CGG | - | chr6_4:81299015-81299034 | None:intergenic | 35.0% | |
| TTGTTCGAAAAAAACTTGCC+TGG | - | chr6_4:81299035-81299054 | None:intergenic | 35.0% | |
| !! | ATTTTAGCCTAAACAACTGC+TGG | - | chr6_4:81299137-81299156 | None:intergenic | 35.0% |
| !! | TCGGACTTTCAAGTTCTTTA+CGG | - | chr6_4:81299206-81299225 | None:intergenic | 35.0% |
| CATCACATGTTACACAGACA+CGG | + | chr6_4:81298173-81298192 | Msa0999360:CDS | 40.0% | |
| ! | AGTCTGTTGCTGCAAGTTTT+GGG | - | chr6_4:81298259-81298278 | None:intergenic | 40.0% |
| ! | TAGTCTGTTGCTGCAAGTTT+TGG | - | chr6_4:81298260-81298279 | None:intergenic | 40.0% |
| ACTTGCAGCAACAGACTAAT+TGG | + | chr6_4:81298262-81298281 | Msa0999360:intron | 40.0% | |
| CTTGCAGCAACAGACTAATT+GGG | + | chr6_4:81298263-81298282 | Msa0999360:intron | 40.0% | |
| TGCAAAGATCCACGTTGAAT+TGG | - | chr6_4:81298307-81298326 | None:intergenic | 40.0% | |
| ! | CTTTGGGAAAATTGTCACAG+AGG | + | chr6_4:81298358-81298377 | Msa0999360:intron | 40.0% |
| ATTCTTGCATTCAGGGGTTT+AGG | + | chr6_4:81298515-81298534 | Msa0999360:intron | 40.0% | |
| TTCTTGCATTCAGGGGTTTA+GGG | + | chr6_4:81298516-81298535 | Msa0999360:intron | 40.0% | |
| CAATGCTTCTTCTCTAGTCT+AGG | + | chr6_4:81298555-81298574 | Msa0999360:intron | 40.0% | |
| AGTCATTTGTGGAAGATTGG+GGG | - | chr6_4:81298715-81298734 | None:intergenic | 40.0% | |
| CAGTCATTTGTGGAAGATTG+GGG | - | chr6_4:81298716-81298735 | None:intergenic | 40.0% | |
| GACAGTCATTTGTGGAAGAT+TGG | - | chr6_4:81298718-81298737 | None:intergenic | 40.0% | |
| TTCTTCTCGACAGTCATTTG+TGG | - | chr6_4:81298726-81298745 | None:intergenic | 40.0% | |
| !!! | ATGAGAAGTTTGCCGGTTTT+TGG | - | chr6_4:81298810-81298829 | None:intergenic | 40.0% |
| TCGTAGTTGCATGAATAAGC+CGG | + | chr6_4:81298993-81299012 | Msa0999360:CDS | 40.0% | |
| !! | GGATGCTGATTTAAATCACC+AGG | + | chr6_4:81299014-81299033 | Msa0999360:CDS | 40.0% |
| !! | CTAAACAACTGCTGGTTTAG+AGG | - | chr6_4:81299129-81299148 | None:intergenic | 40.0% |
| CTCTAAACCAGCAGTTGTTT+AGG | + | chr6_4:81299127-81299146 | Msa0999360:intron | 40.0% | |
| TGTTTAGGCTAAAATGTGCG+TGG | + | chr6_4:81299142-81299161 | Msa0999360:CDS | 40.0% | |
| TGGCAAGGCTCATTATAAAG+AGG | + | chr6_4:81299167-81299186 | Msa0999360:CDS | 40.0% | |
| CAAGGCTCATTATAAAGAGG+AGG | + | chr6_4:81299170-81299189 | Msa0999360:CDS | 40.0% | |
| GGAAGCTGAAATTCGAAAGT+GGG | + | chr6_4:81299281-81299300 | Msa0999360:CDS | 40.0% | |
| CATCACATGTTACACAGACA+CGG | + | chr6_4:81298173-81298192 | Msa0999360:CDS | 40.0% | |
| ! | AGTCTGTTGCTGCAAGTTTT+GGG | - | chr6_4:81298259-81298278 | None:intergenic | 40.0% |
| ! | TAGTCTGTTGCTGCAAGTTT+TGG | - | chr6_4:81298260-81298279 | None:intergenic | 40.0% |
| ACTTGCAGCAACAGACTAAT+TGG | + | chr6_4:81298262-81298281 | Msa0999360:intron | 40.0% | |
| CTTGCAGCAACAGACTAATT+GGG | + | chr6_4:81298263-81298282 | Msa0999360:intron | 40.0% | |
| TGCAAAGATCCACGTTGAAT+TGG | - | chr6_4:81298307-81298326 | None:intergenic | 40.0% | |
| ! | CTTTGGGAAAATTGTCACAG+AGG | + | chr6_4:81298358-81298377 | Msa0999360:intron | 40.0% |
| ATTCTTGCATTCAGGGGTTT+AGG | + | chr6_4:81298515-81298534 | Msa0999360:intron | 40.0% | |
| TTCTTGCATTCAGGGGTTTA+GGG | + | chr6_4:81298516-81298535 | Msa0999360:intron | 40.0% | |
| CAATGCTTCTTCTCTAGTCT+AGG | + | chr6_4:81298555-81298574 | Msa0999360:intron | 40.0% | |
| AGTCATTTGTGGAAGATTGG+GGG | - | chr6_4:81298715-81298734 | None:intergenic | 40.0% | |
| CAGTCATTTGTGGAAGATTG+GGG | - | chr6_4:81298716-81298735 | None:intergenic | 40.0% | |
| GACAGTCATTTGTGGAAGAT+TGG | - | chr6_4:81298718-81298737 | None:intergenic | 40.0% | |
| TTCTTCTCGACAGTCATTTG+TGG | - | chr6_4:81298726-81298745 | None:intergenic | 40.0% | |
| !!! | ATGAGAAGTTTGCCGGTTTT+TGG | - | chr6_4:81298810-81298829 | None:intergenic | 40.0% |
| TCGTAGTTGCATGAATAAGC+CGG | + | chr6_4:81298993-81299012 | Msa0999360:CDS | 40.0% | |
| !! | GGATGCTGATTTAAATCACC+AGG | + | chr6_4:81299014-81299033 | Msa0999360:CDS | 40.0% |
| !! | CTAAACAACTGCTGGTTTAG+AGG | - | chr6_4:81299129-81299148 | None:intergenic | 40.0% |
| CTCTAAACCAGCAGTTGTTT+AGG | + | chr6_4:81299127-81299146 | Msa0999360:intron | 40.0% | |
| TGTTTAGGCTAAAATGTGCG+TGG | + | chr6_4:81299142-81299161 | Msa0999360:CDS | 40.0% | |
| TGGCAAGGCTCATTATAAAG+AGG | + | chr6_4:81299167-81299186 | Msa0999360:CDS | 40.0% | |
| CAAGGCTCATTATAAAGAGG+AGG | + | chr6_4:81299170-81299189 | Msa0999360:CDS | 40.0% | |
| GGAAGCTGAAATTCGAAAGT+GGG | + | chr6_4:81299281-81299300 | Msa0999360:CDS | 40.0% | |
| ! | GACACGGTTTTCGAATACTG+AGG | + | chr6_4:81298189-81298208 | Msa0999360:CDS | 45.0% |
| TTCAACGTGGATCTTTGCAG+AGG | + | chr6_4:81298308-81298327 | Msa0999360:intron | 45.0% | |
| TCAACGTGGATCTTTGCAGA+GGG | + | chr6_4:81298309-81298328 | Msa0999360:intron | 45.0% | |
| ! | TTTTCCCAAAGCGAGATGCT+GGG | - | chr6_4:81298349-81298368 | None:intergenic | 45.0% |
| ! | ATTTTCCCAAAGCGAGATGC+TGG | - | chr6_4:81298350-81298369 | None:intergenic | 45.0% |
| AAGAGATCTGGGCCAAAAAC+CGG | + | chr6_4:81298795-81298814 | Msa0999360:intron | 45.0% | |
| AATCAAACAACGAAGCCTGC+AGG | - | chr6_4:81298945-81298964 | None:intergenic | 45.0% | |
| AGGCTAAAATGTGCGTGGTT+TGG | + | chr6_4:81299147-81299166 | Msa0999360:CDS | 45.0% | |
| ! | AAAATGTGCGTGGTTTGGCA+AGG | + | chr6_4:81299152-81299171 | Msa0999360:CDS | 45.0% |
| CGGAAGCTGAAATTCGAAAG+TGG | + | chr6_4:81299280-81299299 | Msa0999360:CDS | 45.0% | |
| AGCTAAAGTTGGAAAGCAGC+AGG | + | chr6_4:81299305-81299324 | Msa0999360:CDS | 45.0% | |
| ! | GACACGGTTTTCGAATACTG+AGG | + | chr6_4:81298189-81298208 | Msa0999360:CDS | 45.0% |
| TTCAACGTGGATCTTTGCAG+AGG | + | chr6_4:81298308-81298327 | Msa0999360:intron | 45.0% | |
| TCAACGTGGATCTTTGCAGA+GGG | + | chr6_4:81298309-81298328 | Msa0999360:intron | 45.0% | |
| ! | TTTTCCCAAAGCGAGATGCT+GGG | - | chr6_4:81298349-81298368 | None:intergenic | 45.0% |
| ! | ATTTTCCCAAAGCGAGATGC+TGG | - | chr6_4:81298350-81298369 | None:intergenic | 45.0% |
| AAGAGATCTGGGCCAAAAAC+CGG | + | chr6_4:81298795-81298814 | Msa0999360:intron | 45.0% | |
| AATCAAACAACGAAGCCTGC+AGG | - | chr6_4:81298945-81298964 | None:intergenic | 45.0% | |
| AGGCTAAAATGTGCGTGGTT+TGG | + | chr6_4:81299147-81299166 | Msa0999360:CDS | 45.0% | |
| ! | AAAATGTGCGTGGTTTGGCA+AGG | + | chr6_4:81299152-81299171 | Msa0999360:CDS | 45.0% |
| CGGAAGCTGAAATTCGAAAG+TGG | + | chr6_4:81299280-81299299 | Msa0999360:CDS | 45.0% | |
| AGCTAAAGTTGGAAAGCAGC+AGG | + | chr6_4:81299305-81299324 | Msa0999360:CDS | 45.0% | |
| !! | TATAGAAAATTAATATTAAA+GGG | - | chr6_4:81298922-81298941 | None:intergenic | 5.0% |
| !! | TATAGAAAATTAATATTAAA+GGG | - | chr6_4:81298922-81298941 | None:intergenic | 5.0% |
| AGCGAGATGCTGGGACTAAT+TGG | - | chr6_4:81298340-81298359 | None:intergenic | 50.0% | |
| TTAGTCCCAGCATCTCGCTT+TGG | + | chr6_4:81298341-81298360 | Msa0999360:intron | 50.0% | |
| TAGTCCCAGCATCTCGCTTT+GGG | + | chr6_4:81298342-81298361 | Msa0999360:intron | 50.0% | |
| CCTGCGATGATCCAAGTAGT+TGG | - | chr6_4:81298756-81298775 | None:intergenic | 50.0% | |
| CCAACTACTTGGATCATCGC+AGG | + | chr6_4:81298753-81298772 | Msa0999360:intron | 50.0% | |
| ATCGCAGGACCCTCATATAC+TGG | + | chr6_4:81298768-81298787 | Msa0999360:intron | 50.0% | |
| CGAAAGTGGGCAGCTAAAGT+TGG | + | chr6_4:81299294-81299313 | Msa0999360:CDS | 50.0% | |
| AGCGAGATGCTGGGACTAAT+TGG | - | chr6_4:81298340-81298359 | None:intergenic | 50.0% | |
| TTAGTCCCAGCATCTCGCTT+TGG | + | chr6_4:81298341-81298360 | Msa0999360:intron | 50.0% | |
| TAGTCCCAGCATCTCGCTTT+GGG | + | chr6_4:81298342-81298361 | Msa0999360:intron | 50.0% | |
| CCTGCGATGATCCAAGTAGT+TGG | - | chr6_4:81298756-81298775 | None:intergenic | 50.0% | |
| CCAACTACTTGGATCATCGC+AGG | + | chr6_4:81298753-81298772 | Msa0999360:intron | 50.0% | |
| ATCGCAGGACCCTCATATAC+TGG | + | chr6_4:81298768-81298787 | Msa0999360:intron | 50.0% | |
| CGAAAGTGGGCAGCTAAAGT+TGG | + | chr6_4:81299294-81299313 | Msa0999360:CDS | 50.0% | |
| GGGAGAGAGTTAAGCTGCAG+AGG | - | chr6_4:81298695-81298714 | None:intergenic | 55.0% | |
| GGGAGAGAGTTAAGCTGCAG+AGG | - | chr6_4:81298695-81298714 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 81298166 | 81299335 | 81298166 | ID=Msa0999360;Name=Msa0999360 |
| chr6_4 | mRNA | 81298166 | 81299335 | 81298166 | ID=Msa0999360-mRNA-1;Parent=Msa0999360;Name=Msa0999360-mRNA-1;_AED=0.37;_eAED=0.42;_QI=0|0|0|1|0|0|4|0|142 |
| chr6_4 | exon | 81298166 | 81298239 | 81298166 | ID=Msa0999360-mRNA-1:exon:15540;Parent=Msa0999360-mRNA-1 |
| chr6_4 | exon | 81298701 | 81298734 | 81298701 | ID=Msa0999360-mRNA-1:exon:15541;Parent=Msa0999360-mRNA-1 |
| chr6_4 | exon | 81298949 | 81299068 | 81298949 | ID=Msa0999360-mRNA-1:exon:15542;Parent=Msa0999360-mRNA-1 |
| chr6_4 | exon | 81299138 | 81299335 | 81299138 | ID=Msa0999360-mRNA-1:exon:15543;Parent=Msa0999360-mRNA-1 |
| chr6_4 | CDS | 81298166 | 81298239 | 81298166 | ID=Msa0999360-mRNA-1:cds;Parent=Msa0999360-mRNA-1 |
| chr6_4 | CDS | 81298701 | 81298734 | 81298701 | ID=Msa0999360-mRNA-1:cds;Parent=Msa0999360-mRNA-1 |
| chr6_4 | CDS | 81298949 | 81299068 | 81298949 | ID=Msa0999360-mRNA-1:cds;Parent=Msa0999360-mRNA-1 |
| chr6_4 | CDS | 81299138 | 81299335 | 81299138 | ID=Msa0999360-mRNA-1:cds;Parent=Msa0999360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
