Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500450 | XP_003603058.1 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500450 | sp|Q9C635|HSFB4_ARATH | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.48e-119 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500450 | G7J6F2 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0500450 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015570 | Msa0500450 | 0.805138 | 1.542845e-49 | -8.615850e-47 |
| Msa0029960 | Msa0500450 | 0.803421 | 3.514872e-49 | -8.615850e-47 |
| Msa0067060 | Msa0500450 | 0.827327 | 1.663097e-54 | -8.615850e-47 |
| Msa0112670 | Msa0500450 | 0.806849 | 6.736155e-50 | -8.615850e-47 |
| Msa0141640 | Msa0500450 | 0.827414 | 1.585528e-54 | -8.615850e-47 |
| Msa0156050 | Msa0500450 | 0.822710 | 2.047272e-53 | -8.615850e-47 |
| Msa0156090 | Msa0500450 | 0.818472 | 1.925869e-52 | -8.615850e-47 |
| Msa0170070 | Msa0500450 | 0.801244 | 9.864765e-49 | -8.615850e-47 |
| Msa0172590 | Msa0500450 | 0.800992 | 1.110895e-48 | -8.615850e-47 |
| Msa0373170 | Msa0500450 | 0.803927 | 2.759221e-49 | -8.615850e-47 |
| Msa0380540 | Msa0500450 | 0.979589 | 2.666382e-148 | -8.615850e-47 |
| Msa0382740 | Msa0500450 | 0.825331 | 4.969996e-54 | -8.615850e-47 |
| Msa0382770 | Msa0500450 | 0.821248 | 4.466536e-53 | -8.615850e-47 |
| Msa0430080 | Msa0500450 | 0.977717 | 2.419870e-144 | -8.615850e-47 |
| Msa0430170 | Msa0500450 | 0.976641 | 3.247086e-142 | -8.615850e-47 |
| Msa0500450 | Msa0507920 | 0.801171 | 1.020951e-48 | -8.615850e-47 |
| Msa0500450 | Msa0521320 | 0.818155 | 2.271640e-52 | -8.615850e-47 |
| Msa0500450 | Msa0524800 | 0.828700 | 7.768696e-55 | -8.615850e-47 |
| Msa0500450 | Msa0525000 | 0.825444 | 4.671908e-54 | -8.615850e-47 |
| Msa0500450 | Msa0537990 | 0.811367 | 7.252533e-51 | -8.615850e-47 |
| Msa0500450 | Msa0541740 | 0.826262 | 2.987349e-54 | -8.615850e-47 |
| Msa0500450 | Msa0548350 | 0.803621 | 3.194223e-49 | -8.615850e-47 |
| Msa0500450 | Msa0554300 | 0.809395 | 1.932381e-50 | -8.615850e-47 |
| Msa0500450 | Msa0557850 | 0.813700 | 2.241953e-51 | -8.615850e-47 |
| Msa0500450 | Msa0561560 | 0.816560 | 5.193840e-52 | -8.615850e-47 |
| Msa0500450 | Msa0563940 | 0.806967 | 6.358583e-50 | -8.615850e-47 |
| Msa0500450 | Msa0564980 | 0.851497 | 8.541542e-61 | -8.615850e-47 |
| Msa0500450 | Msa0570010 | 0.830279 | 3.212186e-55 | -8.615850e-47 |
| Msa0500450 | Msa0608350 | 0.815575 | 8.617844e-52 | -8.615850e-47 |
| Msa0500450 | Msa0612520 | 0.836782 | 7.649676e-57 | -8.615850e-47 |
| Msa0500450 | Msa0625340 | 0.803206 | 3.893830e-49 | -8.615850e-47 |
| Msa0500450 | Msa0648760 | 0.800755 | 1.241698e-48 | -8.615850e-47 |
| Msa0500450 | Msa0653160 | 0.822679 | 2.082428e-53 | -8.615850e-47 |
| Msa0500450 | Msa0654740 | 0.805862 | 1.087502e-49 | -8.615850e-47 |
| Msa0500450 | Msa0657210 | 0.807299 | 5.410610e-50 | -8.615850e-47 |
| Msa0500450 | Msa0688620 | 0.834588 | 2.748200e-56 | -8.615850e-47 |
| Msa0500450 | Msa0691270 | 0.818637 | 1.766461e-52 | -8.615850e-47 |
| Msa0500450 | Msa0695560 | 0.805266 | 1.450135e-49 | -8.615850e-47 |
| Msa0500450 | Msa0700500 | 0.809075 | 2.263598e-50 | -8.615850e-47 |
| Msa0500450 | Msa0701250 | 0.824000 | 1.022962e-53 | -8.615850e-47 |
| Msa0500450 | Msa0749190 | 0.834298 | 3.250453e-56 | -8.615850e-47 |
| Msa0500450 | Msa0750520 | 0.834416 | 3.034749e-56 | -8.615850e-47 |
| Msa0500450 | Msa0901150 | 0.829836 | 4.118065e-55 | -8.615850e-47 |
| Msa0500450 | Msa0966710 | 0.842145 | 3.091426e-58 | -8.615850e-47 |
| Msa0500450 | Msa1000970 | 0.850408 | 1.730848e-60 | -8.615850e-47 |
| Msa0500450 | Msa1008850 | 0.800635 | 1.313953e-48 | -8.615850e-47 |
| Msa0500450 | Msa1060900 | 0.805794 | 1.123871e-49 | -8.615850e-47 |
| Msa0500450 | Msa1071410 | 0.833412 | 5.414569e-56 | -8.615850e-47 |
| Msa0500450 | Msa1078880 | 0.834953 | 2.224102e-56 | -8.615850e-47 |
| Msa0500450 | Msa1078970 | 0.838645 | 2.542309e-57 | -8.615850e-47 |
| Msa0500450 | Msa1079640 | 0.816628 | 5.014724e-52 | -8.615850e-47 |
| Msa0500450 | Msa1082380 | 0.802677 | 5.008840e-49 | -8.615850e-47 |
| Msa0500450 | Msa1130780 | 0.805553 | 1.262626e-49 | -8.615850e-47 |
| Msa0500450 | Msa1169190 | 0.834292 | 3.260591e-56 | -8.615850e-47 |
| Msa0500450 | Msa1212700 | 0.812562 | 3.982286e-51 | -8.615850e-47 |
| Msa0500450 | Msa1212920 | 0.801444 | 8.979591e-49 | -8.615850e-47 |
| Msa0500450 | Msa1219770 | 0.802390 | 5.739364e-49 | -8.615850e-47 |
| Msa0500450 | Msa1228630 | 0.806096 | 9.710464e-50 | -8.615850e-47 |
| Msa0500450 | Msa1262570 | 0.804744 | 1.864950e-49 | -8.615850e-47 |
| Msa0500450 | Msa1266690 | 0.817569 | 3.081166e-52 | -8.615850e-47 |
| Msa0500450 | Msa1267930 | 0.823798 | 1.140819e-53 | -8.615850e-47 |
| Msa0500450 | Msa1296330 | 0.805354 | 1.390123e-49 | -8.615850e-47 |
| Msa0500450 | Msa1299980 | 0.838086 | 3.542650e-57 | -8.615850e-47 |
| Msa0500450 | Msa1308850 | 0.808801 | 2.591283e-50 | -8.615850e-47 |
| Msa0500450 | Msa1331650 | 0.811612 | 6.417966e-51 | -8.615850e-47 |
| Msa0500450 | Msa1333360 | 0.813096 | 3.043496e-51 | -8.615850e-47 |
| Msa0500450 | Msa1342810 | 0.829935 | 3.897231e-55 | -8.615850e-47 |
| Msa0500450 | Msa1381800 | 0.829388 | 5.293204e-55 | -8.615850e-47 |
| Msa0500450 | Msa1389820 | 0.809361 | 1.965656e-50 | -8.615850e-47 |
| Msa0500450 | Msa1426110 | 0.803201 | 3.903326e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500450 | MtrunA17_Chr3g0134031 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Msa0500450 | MtrunA17_Chr5g0441531 | 47.337 | 338 | 87 | 11 | 1 | 335 | 1 | 250 | 1.42e-87 | 265 |
| Msa0500450 | MtrunA17_Chr5g0397881 | 47.391 | 230 | 107 | 5 | 1 | 228 | 1 | 218 | 6.53e-59 | 194 |
| Msa0500450 | MtrunA17_Chr6g0472421 | 46.429 | 224 | 89 | 5 | 15 | 227 | 24 | 227 | 2.34e-55 | 185 |
| Msa0500450 | MtrunA17_Chr5g0402291 | 44.796 | 221 | 85 | 5 | 17 | 229 | 2 | 193 | 4.25e-51 | 172 |
| Msa0500450 | MtrunA17_Chr1g0203601 | 42.326 | 215 | 95 | 2 | 16 | 229 | 10 | 196 | 5.33e-51 | 172 |
| Msa0500450 | MtrunA17_Chr7g0257331 | 39.744 | 234 | 91 | 5 | 9 | 237 | 2 | 190 | 1.27e-47 | 161 |
| Msa0500450 | MtrunA17_Chr6g0467041 | 74.194 | 93 | 24 | 0 | 23 | 115 | 21 | 113 | 2.80e-46 | 160 |
| Msa0500450 | MtrunA17_Chr8g0375041 | 40.278 | 216 | 83 | 4 | 17 | 229 | 2 | 174 | 5.92e-45 | 155 |
| Msa0500450 | MtrunA17_Chr5g0410881 | 72.632 | 95 | 26 | 0 | 21 | 115 | 29 | 123 | 2.58e-44 | 159 |
| Msa0500450 | MtrunA17_Chr7g0260331 | 69.388 | 98 | 30 | 0 | 18 | 115 | 43 | 140 | 3.19e-43 | 154 |
| Msa0500450 | MtrunA17_Chr8g0378061 | 72.527 | 91 | 25 | 0 | 25 | 115 | 23 | 113 | 1.44e-41 | 152 |
| Msa0500450 | MtrunA17_Chr1g0204741 | 65.049 | 103 | 36 | 0 | 18 | 120 | 34 | 136 | 6.68e-41 | 146 |
| Msa0500450 | MtrunA17_Chr8g0379701 | 64.646 | 99 | 34 | 1 | 17 | 115 | 6 | 103 | 1.70e-39 | 144 |
| Msa0500450 | MtrunA17_Chr4g0039891 | 42.487 | 193 | 63 | 4 | 24 | 216 | 12 | 156 | 7.99e-39 | 144 |
| Msa0500450 | MtrunA17_Chr1g0185131 | 64.078 | 103 | 36 | 1 | 22 | 123 | 30 | 132 | 3.56e-38 | 140 |
| Msa0500450 | MtrunA17_Chr4g0071051 | 59.091 | 110 | 44 | 1 | 18 | 126 | 95 | 204 | 1.66e-37 | 139 |
| Msa0500450 | MtrunA17_Chr6g0485571 | 62.105 | 95 | 36 | 0 | 21 | 115 | 8 | 102 | 9.39e-37 | 136 |
| Msa0500450 | MtrunA17_Chr3g0135831 | 56.757 | 111 | 43 | 1 | 18 | 123 | 40 | 150 | 1.72e-36 | 136 |
| Msa0500450 | MtrunA17_Chr2g0330821 | 65.957 | 94 | 32 | 0 | 22 | 115 | 77 | 170 | 3.80e-36 | 134 |
| Msa0500450 | MtrunA17_Chr2g0284481 | 61.000 | 100 | 38 | 1 | 17 | 116 | 9 | 107 | 4.66e-36 | 135 |
| Msa0500450 | MtrunA17_Chr4g0047421 | 58.000 | 100 | 38 | 1 | 21 | 116 | 30 | 129 | 1.62e-34 | 126 |
| Msa0500450 | MtrunA17_Chr8g0392001 | 62.766 | 94 | 34 | 1 | 23 | 115 | 21 | 114 | 4.27e-33 | 127 |
| Msa0500450 | MtrunA17_Chr1g0179321 | 66.667 | 60 | 20 | 0 | 24 | 83 | 49 | 108 | 2.63e-22 | 90.9 |
| Msa0500450 | MtrunA17_Chr4g0023771 | 56.923 | 65 | 28 | 0 | 17 | 81 | 8 | 72 | 3.65e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500450 | AT1G46264.1 | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.53e-120 | 352 |
| Msa0500450 | AT4G11660.1 | 49.533 | 214 | 105 | 2 | 16 | 227 | 51 | 263 | 9.73e-60 | 197 |
| Msa0500450 | AT5G62020.1 | 44.726 | 237 | 109 | 4 | 17 | 253 | 16 | 230 | 3.18e-58 | 191 |
| Msa0500450 | AT4G36990.1 | 45.794 | 214 | 89 | 2 | 17 | 230 | 7 | 193 | 6.71e-54 | 179 |
| Msa0500450 | AT1G32330.2 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.27e-45 | 163 |
| Msa0500450 | AT1G32330.1 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.33e-45 | 163 |
| Msa0500450 | AT2G41690.1 | 41.905 | 210 | 89 | 5 | 22 | 228 | 38 | 217 | 4.69e-45 | 155 |
| Msa0500450 | AT4G17750.1 | 70.707 | 99 | 29 | 0 | 20 | 118 | 48 | 146 | 4.89e-45 | 162 |
| Msa0500450 | AT3G22830.1 | 67.000 | 100 | 33 | 0 | 18 | 117 | 55 | 154 | 5.47e-42 | 152 |
| Msa0500450 | AT3G02990.1 | 61.261 | 111 | 39 | 2 | 8 | 115 | 5 | 114 | 2.41e-40 | 149 |
| Msa0500450 | AT5G03720.2 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.94e-40 | 147 |
| Msa0500450 | AT5G03720.1 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.94e-40 | 147 |
| Msa0500450 | AT5G16820.1 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.40e-39 | 147 |
| Msa0500450 | AT5G16820.2 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.40e-39 | 147 |
| Msa0500450 | AT5G43840.1 | 64.356 | 101 | 36 | 0 | 22 | 122 | 17 | 117 | 2.89e-39 | 141 |
| Msa0500450 | AT2G26150.1 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.99e-38 | 140 |
| Msa0500450 | AT2G26150.4 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.99e-38 | 140 |
| Msa0500450 | AT3G24520.1 | 62.245 | 98 | 37 | 0 | 21 | 118 | 14 | 111 | 6.23e-38 | 139 |
| Msa0500450 | AT4G13980.1 | 67.033 | 91 | 30 | 0 | 25 | 115 | 24 | 114 | 1.07e-37 | 141 |
| Msa0500450 | AT3G51910.1 | 61.856 | 97 | 37 | 0 | 18 | 114 | 23 | 119 | 3.04e-37 | 135 |
| Msa0500450 | AT3G63350.1 | 60.825 | 97 | 38 | 0 | 18 | 114 | 22 | 118 | 1.09e-35 | 132 |
| Msa0500450 | AT5G54070.1 | 59.341 | 91 | 37 | 0 | 24 | 114 | 71 | 161 | 5.28e-34 | 129 |
| Msa0500450 | AT4G18880.1 | 64.646 | 99 | 34 | 1 | 17 | 115 | 9 | 106 | 1.78e-31 | 123 |
| Msa0500450 | AT1G67970.1 | 57.732 | 97 | 40 | 1 | 23 | 118 | 18 | 114 | 6.76e-31 | 121 |
| Msa0500450 | AT5G45710.3 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.99e-30 | 119 |
| Msa0500450 | AT5G45710.1 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.99e-30 | 119 |
| Msa0500450 | AT4G18870.1 | 42.553 | 94 | 51 | 1 | 18 | 108 | 137 | 230 | 1.17e-20 | 91.3 |
| Msa0500450 | AT4G18870.1 | 44.186 | 86 | 43 | 3 | 25 | 108 | 14 | 96 | 3.45e-16 | 78.6 |
| Msa0500450 | AT1G77570.1 | 38.636 | 88 | 49 | 3 | 25 | 108 | 27 | 113 | 2.27e-12 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTGTTTCCAAACTATT+TGG | 0.202751 | 3_4:-40874723 | None:intergenic |
| AAACAAGGCTCGTTTGGTTT+TGG | 0.245774 | 3_4:+40874740 | Msa0500450:CDS |
| TGAATCATCATCACTGAAAA+TGG | 0.259439 | 3_4:+40873522 | Msa0500450:exon |
| GGATTATTAGATCCACATTC+AGG | 0.261808 | 3_4:-40874702 | None:intergenic |
| TGAAGACGAGTCATATGTTT+AGG | 0.266459 | 3_4:-40874528 | None:intergenic |
| CTAACTCTAGTGTTTGAAAA+TGG | 0.272288 | 3_4:-40874120 | None:intergenic |
| AAGCCAATGAACCAGCTTTC+GGG | 0.281382 | 3_4:+40874489 | Msa0500450:CDS |
| ATCAACAAGTTGGTATGTTT+TGG | 0.282286 | 3_4:-40873620 | None:intergenic |
| CTATTGATGTAGGTGGATTT+TGG | 0.289446 | 3_4:+40875068 | Msa0500450:three_prime_UTR |
| TTAACTTCATCATTTGTTAA+TGG | 0.296353 | 3_4:+40874204 | Msa0500450:CDS |
| GAAGTTGTGCATTTAAAGTT+TGG | 0.305380 | 3_4:-40875122 | None:intergenic |
| TTAACAAATGATGAAGTTAA+TGG | 0.309297 | 3_4:-40874201 | None:intergenic |
| ATGAGAATCCTAAGCTAGTT+AGG | 0.314254 | 3_4:+40874834 | Msa0500450:three_prime_UTR |
| TTGTTGTGTTTGAAGTAGTT+AGG | 0.319993 | 3_4:-40873733 | None:intergenic |
| ATCTAATAATCCAAATAGTT+TGG | 0.322798 | 3_4:+40874713 | Msa0500450:CDS |
| AGGAGGTCTCTAGCAAATTC+TGG | 0.338598 | 3_4:-40873709 | None:intergenic |
| ATGACTCCACCTTCGTTGTT+TGG | 0.343318 | 3_4:+40873680 | Msa0500450:CDS |
| TAGTTGTTTGTTGCTGTTGT+TGG | 0.344004 | 3_4:-40874234 | None:intergenic |
| AAAGCCAATGAACCAGCTTT+CGG | 0.347409 | 3_4:+40874488 | Msa0500450:CDS |
| TGTTGTGTTTGAAGTAGTTA+GGG | 0.361431 | 3_4:-40873732 | None:intergenic |
| CACAGATCACATCGTCTCTT+GGG | 0.368339 | 3_4:+40873651 | Msa0500450:CDS |
| GGAAACAAACAAGGCTCGTT+TGG | 0.378669 | 3_4:+40874734 | Msa0500450:CDS |
| GAGCTTCTTGATGTGTTTGT+TGG | 0.386154 | 3_4:-40874591 | None:intergenic |
| GAAGATCATGATGATATTGA+TGG | 0.395870 | 3_4:+40874971 | Msa0500450:three_prime_UTR |
| ATTGAGAACAAAGATAATAT+TGG | 0.400288 | 3_4:-40875045 | None:intergenic |
| GAAGACGAGTCATATGTTTA+GGG | 0.405370 | 3_4:-40874527 | None:intergenic |
| TGTTCTCAATCTATTGATGT+AGG | 0.411507 | 3_4:+40875058 | Msa0500450:three_prime_UTR |
| TAAGAGTTACTTGGAGCTAC+TGG | 0.420379 | 3_4:-40874390 | None:intergenic |
| ACATTACCACCACCATTCAT+AGG | 0.425778 | 3_4:-40874453 | None:intergenic |
| TAGCCCGAAAGCTGGTTCAT+TGG | 0.429834 | 3_4:-40874492 | None:intergenic |
| CCACAGATCACATCGTCTCT+TGG | 0.431871 | 3_4:+40873650 | Msa0500450:CDS |
| TTGTTCATCAGAGTATTCAT+TGG | 0.454805 | 3_4:-40874154 | None:intergenic |
| CCACCACCATTCATAGGAGT+TGG | 0.459985 | 3_4:-40874447 | None:intergenic |
| CTGATGAACAAGTCAACAAC+TGG | 0.462821 | 3_4:+40874166 | Msa0500450:CDS |
| AGCTCAATAACAATGGTTGA+AGG | 0.469701 | 3_4:+40874609 | Msa0500450:CDS |
| ACATCACAGCCACAACAAAC+AGG | 0.483395 | 3_4:+40874045 | Msa0500450:CDS |
| GATGAAGAGTAAGAGTTACT+TGG | 0.490480 | 3_4:-40874399 | None:intergenic |
| TTAGCAAACTCCCATCTGTC+AGG | 0.497806 | 3_4:-40873967 | None:intergenic |
| GAAAATGGAAAGAAACTTGG+TGG | 0.498648 | 3_4:-40874105 | None:intergenic |
| GATTATTAGATCCACATTCA+GGG | 0.505417 | 3_4:-40874701 | None:intergenic |
| GTGGAACATTGTGATGCTGC+TGG | 0.507886 | 3_4:-40874086 | None:intergenic |
| TGTGTTTGAAGTAGTTAGGG+AGG | 0.509850 | 3_4:-40873729 | None:intergenic |
| TCATCAGAGTATTCATTGGA+TGG | 0.511281 | 3_4:-40874150 | None:intergenic |
| GAAAGATTGTACCTGACAGA+TGG | 0.519136 | 3_4:+40873956 | Msa0500450:CDS |
| GTTTGAAGTAGTTAGGGAGG+AGG | 0.523740 | 3_4:-40873726 | None:intergenic |
| TCAAATCCAACTCCTATGAA+TGG | 0.530340 | 3_4:+40874441 | Msa0500450:CDS |
| AATTGTAATAGCCCGAAAGC+TGG | 0.534218 | 3_4:-40874500 | None:intergenic |
| TCTCAATCTATTGATGTAGG+TGG | 0.534364 | 3_4:+40875061 | Msa0500450:three_prime_UTR |
| TTTGAAAATGGAAAGAAACT+TGG | 0.548152 | 3_4:-40874108 | None:intergenic |
| TGGTGGTGGTAATGTTTCAA+TGG | 0.548976 | 3_4:+40874461 | Msa0500450:CDS |
| ACTTCATCATTTGTTAATGG+AGG | 0.552014 | 3_4:+40874207 | Msa0500450:CDS |
| CCACAAAATCAATCCCATCA+TGG | 0.552202 | 3_4:+40874552 | Msa0500450:CDS |
| AGTTCACATTCATACCATGA+TGG | 0.552494 | 3_4:-40874566 | None:intergenic |
| ATGTTGATTCCTGTTTGTTG+TGG | 0.553850 | 3_4:-40874054 | None:intergenic |
| AAAAGAGTGCACCCTGAATG+TGG | 0.555827 | 3_4:+40874690 | Msa0500450:CDS |
| TTCAATAACACACACAACAC+TGG | 0.558866 | 3_4:-40873503 | None:intergenic |
| ACAAATGATGAAGTTAATGG+TGG | 0.561209 | 3_4:-40874198 | None:intergenic |
| ACACTGGTTTAGAGAGGGAG+AGG | 0.565479 | 3_4:-40873487 | None:intergenic |
| GTTCACATTCATACCATGAT+GGG | 0.572426 | 3_4:-40874565 | None:intergenic |
| CCAACTCCTATGAATGGTGG+TGG | 0.572594 | 3_4:+40874447 | Msa0500450:CDS |
| AAAGATTGTACCTGACAGAT+GGG | 0.574158 | 3_4:+40873957 | Msa0500450:CDS |
| GCTCAATAACAATGGTTGAA+GGG | 0.590591 | 3_4:+40874610 | Msa0500450:CDS |
| GGAGTTGGATTTGAAGCTTG+TGG | 0.599678 | 3_4:-40874432 | None:intergenic |
| AAAACTAACTAACAAGTGGA+AGG | 0.604739 | 3_4:-40874804 | None:intergenic |
| TGGTTGGATCATCAACAAGT+TGG | 0.622309 | 3_4:-40873630 | None:intergenic |
| CACACAACACTGGTTTAGAG+AGG | 0.626575 | 3_4:-40873493 | None:intergenic |
| ACAGATCACATCGTCTCTTG+GGG | 0.629510 | 3_4:+40873652 | Msa0500450:CDS |
| ATCAAGAAGCTCAATAACAA+TGG | 0.631659 | 3_4:+40874602 | Msa0500450:CDS |
| GAGACGATGTGATCTGTGGT+TGG | 0.633776 | 3_4:-40873646 | None:intergenic |
| AAATAGTTTGGAAACAAACA+AGG | 0.638741 | 3_4:+40874725 | Msa0500450:CDS |
| AGGACGCCAAACAACGAAGG+TGG | 0.642419 | 3_4:-40873686 | None:intergenic |
| ACACAACACTGGTTTAGAGA+GGG | 0.651513 | 3_4:-40873492 | None:intergenic |
| AATCCAACTCCTATGAATGG+TGG | 0.654630 | 3_4:+40874444 | Msa0500450:CDS |
| ACTAACTAACAAGTGGAAGG+AGG | 0.655564 | 3_4:-40874801 | None:intergenic |
| CTTCTACTAGACAACTGTGA+AGG | 0.669455 | 3_4:+40873547 | Msa0500450:CDS |
| AGGTCTCTAGCAAATTCTGG+AGG | 0.693279 | 3_4:-40873706 | None:intergenic |
| TGGAGGACGCCAAACAACGA+AGG | 0.695849 | 3_4:-40873689 | None:intergenic |
| CCAAGAGACGATGTGATCTG+TGG | 0.707530 | 3_4:-40873650 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | + | chr3_4:40873927-40873946 | Msa0500450:intron | 10.0% |
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | + | chr3_4:40873928-40873947 | Msa0500450:intron | 10.0% |
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | + | chr3_4:40873927-40873946 | Msa0500450:intron | 10.0% |
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | + | chr3_4:40873928-40873947 | Msa0500450:intron | 10.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | + | chr3_4:40873985-40874004 | Msa0500450:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | - | chr3_4:40874204-40874223 | None:intergenic | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | + | chr3_4:40874204-40874223 | Msa0500450:CDS | 20.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | + | chr3_4:40874713-40874732 | Msa0500450:CDS | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | + | chr3_4:40874764-40874783 | Msa0500450:CDS | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | + | chr3_4:40874765-40874784 | Msa0500450:CDS | 20.0% |
| !! | ATTGAGAACAAAGATAATAT+TGG | - | chr3_4:40875048-40875067 | None:intergenic | 20.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | + | chr3_4:40873985-40874004 | Msa0500450:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | - | chr3_4:40874204-40874223 | None:intergenic | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | + | chr3_4:40874204-40874223 | Msa0500450:CDS | 20.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | + | chr3_4:40874713-40874732 | Msa0500450:CDS | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | + | chr3_4:40874764-40874783 | Msa0500450:CDS | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | + | chr3_4:40874765-40874784 | Msa0500450:CDS | 20.0% |
| !! | ATTGAGAACAAAGATAATAT+TGG | - | chr3_4:40875048-40875067 | None:intergenic | 20.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | - | chr3_4:40874111-40874130 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | - | chr3_4:40874726-40874745 | None:intergenic | 25.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | + | chr3_4:40874725-40874744 | Msa0500450:CDS | 25.0% |
| ! | AAGAAAAACTAACTAACAAG+TGG | - | chr3_4:40874811-40874830 | None:intergenic | 25.0% |
| !! | AAAAAAAACCTAACTAGCTT+AGG | - | chr3_4:40874845-40874864 | None:intergenic | 25.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | - | chr3_4:40874111-40874130 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | - | chr3_4:40874726-40874745 | None:intergenic | 25.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | + | chr3_4:40874725-40874744 | Msa0500450:CDS | 25.0% |
| ! | AAGAAAAACTAACTAACAAG+TGG | - | chr3_4:40874811-40874830 | None:intergenic | 25.0% |
| !! | AAAAAAAACCTAACTAGCTT+AGG | - | chr3_4:40874845-40874864 | None:intergenic | 25.0% |
| TGAATCATCATCACTGAAAA+TGG | + | chr3_4:40873522-40873541 | Msa0500450:exon | 30.0% | |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | - | chr3_4:40873623-40873642 | None:intergenic | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | - | chr3_4:40873735-40873754 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | - | chr3_4:40873736-40873755 | None:intergenic | 30.0% |
| CTAACTCTAGTGTTTGAAAA+TGG | - | chr3_4:40874123-40874142 | None:intergenic | 30.0% | |
| ! | TTGTTCATCAGAGTATTCAT+TGG | - | chr3_4:40874157-40874176 | None:intergenic | 30.0% |
| ACAAATGATGAAGTTAATGG+TGG | - | chr3_4:40874201-40874220 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | + | chr3_4:40874207-40874226 | Msa0500450:CDS | 30.0% |
| ATCAAGAAGCTCAATAACAA+TGG | + | chr3_4:40874602-40874621 | Msa0500450:CDS | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | - | chr3_4:40874704-40874723 | None:intergenic | 30.0% | |
| AAAACTAACTAACAAGTGGA+AGG | - | chr3_4:40874807-40874826 | None:intergenic | 30.0% | |
| !!! | GATTATCAAGTTTTGAGTCA+CGG | + | chr3_4:40874939-40874958 | Msa0500450:three_prime_UTR | 30.0% |
| GAAGATCATGATGATATTGA+TGG | + | chr3_4:40874971-40874990 | Msa0500450:three_prime_UTR | 30.0% | |
| TGTTCTCAATCTATTGATGT+AGG | + | chr3_4:40875058-40875077 | Msa0500450:three_prime_UTR | 30.0% | |
| TGAATCATCATCACTGAAAA+TGG | + | chr3_4:40873522-40873541 | Msa0500450:exon | 30.0% | |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | - | chr3_4:40873623-40873642 | None:intergenic | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | - | chr3_4:40873735-40873754 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | - | chr3_4:40873736-40873755 | None:intergenic | 30.0% |
| CTAACTCTAGTGTTTGAAAA+TGG | - | chr3_4:40874123-40874142 | None:intergenic | 30.0% | |
| ! | TTGTTCATCAGAGTATTCAT+TGG | - | chr3_4:40874157-40874176 | None:intergenic | 30.0% |
| ACAAATGATGAAGTTAATGG+TGG | - | chr3_4:40874201-40874220 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | + | chr3_4:40874207-40874226 | Msa0500450:CDS | 30.0% |
| ATCAAGAAGCTCAATAACAA+TGG | + | chr3_4:40874602-40874621 | Msa0500450:CDS | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | - | chr3_4:40874704-40874723 | None:intergenic | 30.0% | |
| AAAACTAACTAACAAGTGGA+AGG | - | chr3_4:40874807-40874826 | None:intergenic | 30.0% | |
| !!! | GATTATCAAGTTTTGAGTCA+CGG | + | chr3_4:40874939-40874958 | Msa0500450:three_prime_UTR | 30.0% |
| GAAGATCATGATGATATTGA+TGG | + | chr3_4:40874971-40874990 | Msa0500450:three_prime_UTR | 30.0% | |
| TGTTCTCAATCTATTGATGT+AGG | + | chr3_4:40875058-40875077 | Msa0500450:three_prime_UTR | 30.0% | |
| TTCAATAACACACACAACAC+TGG | - | chr3_4:40873506-40873525 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | - | chr3_4:40873788-40873807 | None:intergenic | 35.0% | |
| AAAGATTGTACCTGACAGAT+GGG | + | chr3_4:40873957-40873976 | Msa0500450:CDS | 35.0% | |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | - | chr3_4:40874057-40874076 | None:intergenic | 35.0% |
| GAAAATGGAAAGAAACTTGG+TGG | - | chr3_4:40874108-40874127 | None:intergenic | 35.0% | |
| ! | TCATCAGAGTATTCATTGGA+TGG | - | chr3_4:40874153-40874172 | None:intergenic | 35.0% |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | - | chr3_4:40874237-40874256 | None:intergenic | 35.0% |
| GATGAAGAGTAAGAGTTACT+TGG | - | chr3_4:40874402-40874421 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | + | chr3_4:40874441-40874460 | Msa0500450:CDS | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | - | chr3_4:40874530-40874549 | None:intergenic | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | - | chr3_4:40874531-40874550 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | - | chr3_4:40874568-40874587 | None:intergenic | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | - | chr3_4:40874569-40874588 | None:intergenic | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | + | chr3_4:40874609-40874628 | Msa0500450:CDS | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | + | chr3_4:40874610-40874629 | Msa0500450:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | - | chr3_4:40874705-40874724 | None:intergenic | 35.0% | |
| ATGAGAATCCTAAGCTAGTT+AGG | + | chr3_4:40874834-40874853 | Msa0500450:three_prime_UTR | 35.0% | |
| TCTCAATCTATTGATGTAGG+TGG | + | chr3_4:40875061-40875080 | Msa0500450:three_prime_UTR | 35.0% | |
| !! | CTATTGATGTAGGTGGATTT+TGG | + | chr3_4:40875068-40875087 | Msa0500450:three_prime_UTR | 35.0% |
| TTCAATAACACACACAACAC+TGG | - | chr3_4:40873506-40873525 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | - | chr3_4:40873788-40873807 | None:intergenic | 35.0% | |
| AAAGATTGTACCTGACAGAT+GGG | + | chr3_4:40873957-40873976 | Msa0500450:CDS | 35.0% | |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | - | chr3_4:40874057-40874076 | None:intergenic | 35.0% |
| GAAAATGGAAAGAAACTTGG+TGG | - | chr3_4:40874108-40874127 | None:intergenic | 35.0% | |
| ! | TCATCAGAGTATTCATTGGA+TGG | - | chr3_4:40874153-40874172 | None:intergenic | 35.0% |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | - | chr3_4:40874237-40874256 | None:intergenic | 35.0% |
| GATGAAGAGTAAGAGTTACT+TGG | - | chr3_4:40874402-40874421 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | + | chr3_4:40874441-40874460 | Msa0500450:CDS | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | - | chr3_4:40874530-40874549 | None:intergenic | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | - | chr3_4:40874531-40874550 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | - | chr3_4:40874568-40874587 | None:intergenic | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | - | chr3_4:40874569-40874588 | None:intergenic | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | + | chr3_4:40874609-40874628 | Msa0500450:CDS | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | + | chr3_4:40874610-40874629 | Msa0500450:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | - | chr3_4:40874705-40874724 | None:intergenic | 35.0% | |
| ATGAGAATCCTAAGCTAGTT+AGG | + | chr3_4:40874834-40874853 | Msa0500450:three_prime_UTR | 35.0% | |
| TCTCAATCTATTGATGTAGG+TGG | + | chr3_4:40875061-40875080 | Msa0500450:three_prime_UTR | 35.0% | |
| !! | CTATTGATGTAGGTGGATTT+TGG | + | chr3_4:40875068-40875087 | Msa0500450:three_prime_UTR | 35.0% |
| !! | ACACAACACTGGTTTAGAGA+GGG | - | chr3_4:40873495-40873514 | None:intergenic | 40.0% |
| CTTCTACTAGACAACTGTGA+AGG | + | chr3_4:40873547-40873566 | Msa0500450:CDS | 40.0% | |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | - | chr3_4:40873613-40873632 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | - | chr3_4:40873618-40873637 | None:intergenic | 40.0% |
| TGGTTGGATCATCAACAAGT+TGG | - | chr3_4:40873633-40873652 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | - | chr3_4:40873732-40873751 | None:intergenic | 40.0% |
| GAAAGATTGTACCTGACAGA+TGG | + | chr3_4:40873956-40873975 | Msa0500450:CDS | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | + | chr3_4:40874166-40874185 | Msa0500450:CDS | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | - | chr3_4:40874393-40874412 | None:intergenic | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | + | chr3_4:40874444-40874463 | Msa0500450:CDS | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | - | chr3_4:40874456-40874475 | None:intergenic | 40.0% | |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | + | chr3_4:40874461-40874480 | Msa0500450:CDS | 40.0% |
| AAAGCCAATGAACCAGCTTT+CGG | + | chr3_4:40874488-40874507 | Msa0500450:CDS | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | - | chr3_4:40874503-40874522 | None:intergenic | 40.0% | |
| !! | CCATGATGGGATTGATTTTG+TGG | - | chr3_4:40874555-40874574 | None:intergenic | 40.0% |
| CCACAAAATCAATCCCATCA+TGG | + | chr3_4:40874552-40874571 | Msa0500450:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | - | chr3_4:40874594-40874613 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | + | chr3_4:40874648-40874667 | Msa0500450:CDS | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | + | chr3_4:40874740-40874759 | Msa0500450:CDS | 40.0% |
| ACTAACTAACAAGTGGAAGG+AGG | - | chr3_4:40874804-40874823 | None:intergenic | 40.0% | |
| !!! | TATCAAGTTTTGAGTCACGG+AGG | + | chr3_4:40874942-40874961 | Msa0500450:three_prime_UTR | 40.0% |
| !! | ACACAACACTGGTTTAGAGA+GGG | - | chr3_4:40873495-40873514 | None:intergenic | 40.0% |
| CTTCTACTAGACAACTGTGA+AGG | + | chr3_4:40873547-40873566 | Msa0500450:CDS | 40.0% | |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | - | chr3_4:40873613-40873632 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | - | chr3_4:40873618-40873637 | None:intergenic | 40.0% |
| TGGTTGGATCATCAACAAGT+TGG | - | chr3_4:40873633-40873652 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | - | chr3_4:40873732-40873751 | None:intergenic | 40.0% |
| GAAAGATTGTACCTGACAGA+TGG | + | chr3_4:40873956-40873975 | Msa0500450:CDS | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | + | chr3_4:40874166-40874185 | Msa0500450:CDS | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | - | chr3_4:40874393-40874412 | None:intergenic | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | + | chr3_4:40874444-40874463 | Msa0500450:CDS | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | - | chr3_4:40874456-40874475 | None:intergenic | 40.0% | |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | + | chr3_4:40874461-40874480 | Msa0500450:CDS | 40.0% |
| AAAGCCAATGAACCAGCTTT+CGG | + | chr3_4:40874488-40874507 | Msa0500450:CDS | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | - | chr3_4:40874503-40874522 | None:intergenic | 40.0% | |
| !! | CCATGATGGGATTGATTTTG+TGG | - | chr3_4:40874555-40874574 | None:intergenic | 40.0% |
| CCACAAAATCAATCCCATCA+TGG | + | chr3_4:40874552-40874571 | Msa0500450:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | - | chr3_4:40874594-40874613 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | + | chr3_4:40874648-40874667 | Msa0500450:CDS | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | + | chr3_4:40874740-40874759 | Msa0500450:CDS | 40.0% |
| ACTAACTAACAAGTGGAAGG+AGG | - | chr3_4:40874804-40874823 | None:intergenic | 40.0% | |
| !!! | TATCAAGTTTTGAGTCACGG+AGG | + | chr3_4:40874942-40874961 | Msa0500450:three_prime_UTR | 40.0% |
| !! | CACACAACACTGGTTTAGAG+AGG | - | chr3_4:40873496-40873515 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | - | chr3_4:40873606-40873625 | None:intergenic | 45.0% |
| CACAGATCACATCGTCTCTT+GGG | + | chr3_4:40873651-40873670 | Msa0500450:CDS | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | + | chr3_4:40873652-40873671 | Msa0500450:CDS | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | + | chr3_4:40873680-40873699 | Msa0500450:CDS | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | - | chr3_4:40873709-40873728 | None:intergenic | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | - | chr3_4:40873712-40873731 | None:intergenic | 45.0% | |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | - | chr3_4:40873729-40873748 | None:intergenic | 45.0% |
| TAACGAATCGAAGCGACAAG+AGG | - | chr3_4:40873857-40873876 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | - | chr3_4:40873970-40873989 | None:intergenic | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | + | chr3_4:40874045-40874064 | Msa0500450:CDS | 45.0% | |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | - | chr3_4:40874435-40874454 | None:intergenic | 45.0% |
| AAGCCAATGAACCAGCTTTC+GGG | + | chr3_4:40874489-40874508 | Msa0500450:CDS | 45.0% | |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | - | chr3_4:40874688-40874707 | None:intergenic | 45.0% |
| ! | AAAAGAGTGCACCCTGAATG+TGG | + | chr3_4:40874690-40874709 | Msa0500450:CDS | 45.0% |
| GGAAACAAACAAGGCTCGTT+TGG | + | chr3_4:40874734-40874753 | Msa0500450:CDS | 45.0% | |
| !! | CACACAACACTGGTTTAGAG+AGG | - | chr3_4:40873496-40873515 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | - | chr3_4:40873606-40873625 | None:intergenic | 45.0% |
| CACAGATCACATCGTCTCTT+GGG | + | chr3_4:40873651-40873670 | Msa0500450:CDS | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | + | chr3_4:40873652-40873671 | Msa0500450:CDS | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | + | chr3_4:40873680-40873699 | Msa0500450:CDS | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | - | chr3_4:40873709-40873728 | None:intergenic | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | - | chr3_4:40873712-40873731 | None:intergenic | 45.0% | |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | - | chr3_4:40873729-40873748 | None:intergenic | 45.0% |
| TAACGAATCGAAGCGACAAG+AGG | - | chr3_4:40873857-40873876 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | - | chr3_4:40873970-40873989 | None:intergenic | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | + | chr3_4:40874045-40874064 | Msa0500450:CDS | 45.0% | |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | - | chr3_4:40874435-40874454 | None:intergenic | 45.0% |
| AAGCCAATGAACCAGCTTTC+GGG | + | chr3_4:40874489-40874508 | Msa0500450:CDS | 45.0% | |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | - | chr3_4:40874688-40874707 | None:intergenic | 45.0% |
| ! | AAAAGAGTGCACCCTGAATG+TGG | + | chr3_4:40874690-40874709 | Msa0500450:CDS | 45.0% |
| GGAAACAAACAAGGCTCGTT+TGG | + | chr3_4:40874734-40874753 | Msa0500450:CDS | 45.0% | |
| !! | ACACTGGTTTAGAGAGGGAG+AGG | - | chr3_4:40873490-40873509 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | - | chr3_4:40873607-40873626 | None:intergenic | 50.0% |
| GAGACGATGTGATCTGTGGT+TGG | - | chr3_4:40873649-40873668 | None:intergenic | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | - | chr3_4:40873653-40873672 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | + | chr3_4:40873650-40873669 | Msa0500450:CDS | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | - | chr3_4:40874089-40874108 | None:intergenic | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | - | chr3_4:40874450-40874469 | None:intergenic | 50.0% | |
| CCAACTCCTATGAATGGTGG+TGG | + | chr3_4:40874447-40874466 | Msa0500450:CDS | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | - | chr3_4:40874495-40874514 | None:intergenic | 50.0% |
| !! | TTTTGAGTCACGGAGGAGCT+AGG | + | chr3_4:40874949-40874968 | Msa0500450:three_prime_UTR | 50.0% |
| !! | ACACTGGTTTAGAGAGGGAG+AGG | - | chr3_4:40873490-40873509 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | - | chr3_4:40873607-40873626 | None:intergenic | 50.0% |
| GAGACGATGTGATCTGTGGT+TGG | - | chr3_4:40873649-40873668 | None:intergenic | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | - | chr3_4:40873653-40873672 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | + | chr3_4:40873650-40873669 | Msa0500450:CDS | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | - | chr3_4:40874089-40874108 | None:intergenic | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | - | chr3_4:40874450-40874469 | None:intergenic | 50.0% | |
| CCAACTCCTATGAATGGTGG+TGG | + | chr3_4:40874447-40874466 | Msa0500450:CDS | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | - | chr3_4:40874495-40874514 | None:intergenic | 50.0% |
| !! | TTTTGAGTCACGGAGGAGCT+AGG | + | chr3_4:40874949-40874968 | Msa0500450:three_prime_UTR | 50.0% |
| AGGACGCCAAACAACGAAGG+TGG | - | chr3_4:40873689-40873708 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | - | chr3_4:40873692-40873711 | None:intergenic | 55.0% | |
| AGGACGCCAAACAACGAAGG+TGG | - | chr3_4:40873689-40873708 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | - | chr3_4:40873692-40873711 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 40873443 | 40875138 | 40873443 | ID=Msa0500450;Name=Msa0500450 |
| chr3_4 | mRNA | 40873443 | 40875138 | 40873443 | ID=Msa0500450-mRNA-1;Parent=Msa0500450;Name=Msa0500450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=98|1|1|1|1|1|2|320|372 |
| chr3_4 | exon | 40873443 | 40873789 | 40873443 | ID=Msa0500450-mRNA-1:exon:8365;Parent=Msa0500450-mRNA-1 |
| chr3_4 | exon | 40873949 | 40875138 | 40873949 | ID=Msa0500450-mRNA-1:exon:8366;Parent=Msa0500450-mRNA-1 |
| chr3_4 | five_prime_UTR | 40873443 | 40873540 | 40873443 | ID=Msa0500450-mRNA-1:five_prime_utr;Parent=Msa0500450-mRNA-1 |
| chr3_4 | CDS | 40873541 | 40873789 | 40873541 | ID=Msa0500450-mRNA-1:cds;Parent=Msa0500450-mRNA-1 |
| chr3_4 | CDS | 40873949 | 40874818 | 40873949 | ID=Msa0500450-mRNA-1:cds;Parent=Msa0500450-mRNA-1 |
| chr3_4 | three_prime_UTR | 40874819 | 40875138 | 40874819 | ID=Msa0500450-mRNA-1:three_prime_utr;Parent=Msa0500450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
