AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550560 MtrunA17_Chr8g0387501 95.636 275 7 2 1 274 1 271 0.0 540
Msa0550560 MtrunA17_Chr7g0248691 45.361 194 89 5 25 207 42 229 3.82e-42 147
Msa0550560 MtrunA17_Chr8g0348311 44.809 183 84 4 49 219 70 247 2.08e-38 137
Msa0550560 MtrunA17_Chr2g0293481 50.000 140 51 4 89 212 215 351 3.68e-36 134
Msa0550560 MtrunA17_Chr1g0202461 53.435 131 51 4 99 225 225 349 5.34e-36 132
Msa0550560 MtrunA17_Chr2g0284321 56.566 99 40 1 101 196 1 99 1.89e-32 118
Msa0550560 MtrunA17_Chr7g0270051 50.000 114 50 2 91 197 5 118 1.27e-30 115
Msa0550560 MtrunA17_Chr2g0319961 55.319 94 34 1 107 192 47 140 7.09e-28 107
Msa0550560 MtrunA17_Chr8g0379461 58.904 73 30 0 133 205 77 149 1.33e-27 106
Msa0550560 MtrunA17_Chr2g0289181 54.795 73 32 1 133 204 15 87 5.63e-23 94.4
Msa0550560 MtrunA17_Chr4g0071521 51.765 85 41 0 107 191 220 304 4.04e-22 93.6
Msa0550560 MtrunA17_Chr1g0147881 50.602 83 36 2 111 189 238 319 1.76e-21 92.0
Msa0550560 MtrunA17_Chr4g0053281 47.573 103 42 3 110 208 241 335 2.88e-21 91.7
Msa0550560 MtrunA17_Chr5g0401821 51.807 83 35 2 111 189 175 256 3.97e-21 90.1
Msa0550560 MtrunA17_Chr4g0051881 50.617 81 38 2 131 210 177 256 1.96e-20 89.4
Msa0550560 MtrunA17_Chr1g0184691 54.930 71 28 1 123 189 280 350 3.47e-20 89.0
Msa0550560 MtrunA17_Chr7g0228941 59.649 57 23 0 133 189 53 109 6.00e-20 83.2
Msa0550560 MtrunA17_Chr1g0194481 50.704 71 33 2 131 200 157 226 6.48e-20 87.8
Msa0550560 MtrunA17_Chr7g0218081 46.875 96 47 3 104 197 381 474 9.94e-20 88.6
Msa0550560 MtrunA17_Chr7g0218081 47.887 71 33 3 127 195 223 291 1.03e-12 67.8
Msa0550560 MtrunA17_Chr3g0139021 48.193 83 38 2 113 191 292 373 2.18e-19 87.0
Msa0550560 MtrunA17_Chr4g0042831 46.739 92 44 3 104 195 254 340 3.47e-18 83.6
Msa0550560 MtrunA17_Chr4g0042831 43.939 66 36 1 127 192 140 204 3.21e-11 63.2
Msa0550560 MtrunA17_Chr5g0443131 55.556 63 27 1 131 193 156 217 5.27e-18 82.0
Msa0550560 MtrunA17_Chr5g0418781 41.053 95 55 1 95 189 87 180 5.66e-18 81.6
Msa0550560 MtrunA17_Chr5g0418191 49.333 75 36 2 118 192 307 379 6.30e-18 82.8
Msa0550560 MtrunA17_Chr5g0418191 45.833 72 35 3 127 196 146 215 1.83e-12 67.0
Msa0550560 MtrunA17_Chr3g0101131 46.835 79 40 2 118 196 402 478 1.72e-17 82.0
Msa0550560 MtrunA17_Chr3g0101131 44.444 72 36 3 126 195 237 306 7.58e-12 65.1
Msa0550560 MtrunA17_Chr7g0270191 50.725 69 33 1 131 199 144 211 2.10e-17 80.1
Msa0550560 MtrunA17_Chr5g0445311 45.238 84 41 3 120 200 353 434 2.74e-17 81.3
Msa0550560 MtrunA17_Chr5g0445311 45.714 70 35 3 133 201 201 268 7.99e-12 65.1
Msa0550560 MtrunA17_Chr5g0428351 34.591 159 84 5 73 223 128 274 2.89e-17 80.1
Msa0550560 MtrunA17_Chr3g0099641 35.514 107 63 1 102 202 215 321 4.09e-17 80.9
Msa0550560 MtrunA17_Chr7g0263531 41.667 96 41 2 111 192 326 420 4.10e-17 80.5
Msa0550560 MtrunA17_Chr7g0263531 36.301 146 64 7 133 274 190 310 1.36e-14 73.2
Msa0550560 MtrunA17_Chr7g0238921 41.284 109 58 3 86 189 73 180 6.41e-17 79.3
Msa0550560 MtrunA17_Chr4g0001361 44.444 81 41 1 133 213 163 239 1.67e-16 77.8
Msa0550560 MtrunA17_Chr2g0294231 48.571 70 34 2 131 199 202 270 1.97e-16 78.2
Msa0550560 MtrunA17_Chr7g0270831 44.444 72 40 0 131 202 215 286 2.38e-16 78.6
Msa0550560 MtrunA17_Chr4g0051181 39.785 93 54 1 102 192 211 303 2.50e-16 78.6
Msa0550560 MtrunA17_Chr3g0079691 46.250 80 41 2 118 197 482 559 2.61e-16 78.6
Msa0550560 MtrunA17_Chr3g0079691 48.780 82 36 5 124 202 271 349 1.61e-15 76.3
Msa0550560 MtrunA17_Chr5g0447701 45.570 79 42 1 120 198 240 317 3.72e-16 77.8
Msa0550560 MtrunA17_Chr2g0333851 38.095 105 63 1 114 216 149 253 3.77e-16 77.0
Msa0550560 MtrunA17_Chr4g0025061 40.964 83 49 0 120 202 348 430 4.87e-16 77.8
Msa0550560 MtrunA17_Chr7g0249301 33.588 131 83 3 65 195 228 354 4.97e-16 77.0
Msa0550560 MtrunA17_Chr7g0249301 48.649 74 34 3 130 201 60 131 1.08e-15 76.3
Msa0550560 MtrunA17_Chr4g0025051 45.833 72 39 0 131 202 334 405 5.04e-16 77.8
Msa0550560 MtrunA17_Chr7g0249311 46.753 77 40 1 120 196 380 455 1.06e-15 77.0
Msa0550560 MtrunA17_Chr7g0249311 49.296 71 32 3 133 201 180 248 3.97e-14 72.0
Msa0550560 MtrunA17_Chr2g0288871 48.387 62 32 0 131 192 304 365 1.75e-15 76.3
Msa0550560 MtrunA17_Chr7g0243891 40.816 98 55 3 120 217 363 457 2.05e-15 75.9
Msa0550560 MtrunA17_Chr7g0243891 38.144 97 56 3 133 227 217 311 7.15e-14 71.2
Msa0550560 MtrunA17_Chr2g0302391 42.353 85 47 1 131 213 210 294 2.54e-15 75.5
Msa0550560 MtrunA17_Chr4g0068541 47.619 63 32 1 131 193 207 268 2.88e-15 75.1
Msa0550560 MtrunA17_Chr4g0004911 44.872 78 41 2 118 195 323 398 3.54e-15 75.1
Msa0550560 MtrunA17_Chr4g0004911 48.333 60 30 1 133 192 185 243 4.71e-13 68.9
Msa0550560 MtrunA17_Chr1g0188941 39.080 87 49 3 107 193 29 111 5.34e-15 69.7
Msa0550560 MtrunA17_Chr7g0216891 42.466 73 42 0 130 202 217 289 5.93e-15 74.7
Msa0550560 MtrunA17_Chr3g0126391 44.928 69 36 1 121 187 122 190 9.04e-15 73.2
Msa0550560 MtrunA17_Chr4g0075201 48.333 60 31 0 133 192 268 327 1.15e-14 73.6
Msa0550560 MtrunA17_Chr1g0150801 35.135 111 67 2 85 191 51 160 1.27e-14 70.1
Msa0550560 MtrunA17_Chr1g0150281 49.123 57 29 0 133 189 141 197 1.42e-14 72.0
Msa0550560 MtrunA17_Chr3g0106491 41.379 87 49 2 118 204 352 436 1.57e-14 73.2
Msa0550560 MtrunA17_Chr3g0106491 47.761 67 31 3 133 197 199 263 1.54e-12 67.4
Msa0550560 MtrunA17_Chr1g0189391 42.000 100 48 4 115 205 80 178 1.65e-14 72.4
Msa0550560 MtrunA17_Chr3g0136961 32.331 133 77 2 89 217 104 227 1.70e-14 72.0
Msa0550560 MtrunA17_Chr7g0224801 50.000 60 29 1 131 190 92 150 3.46e-14 68.9
Msa0550560 MtrunA17_Chr5g0432161 38.710 93 56 1 105 197 394 485 3.57e-14 72.4
Msa0550560 MtrunA17_Chr5g0432161 48.333 60 29 2 133 192 245 302 1.50e-11 64.3
Msa0550560 MtrunA17_Chr8g0347251 38.384 99 50 2 107 194 102 200 4.38e-14 71.2
Msa0550560 MtrunA17_Chr4g0024391 43.056 72 41 0 131 202 228 299 4.98e-14 71.6
Msa0550560 MtrunA17_Chr3g0129321 48.333 60 30 1 133 192 119 177 8.96e-14 68.6
Msa0550560 MtrunA17_Chr7g0275531 43.243 74 36 2 128 195 114 187 1.01e-13 70.1
Msa0550560 MtrunA17_Chr6g0485431 42.500 80 42 3 120 196 142 220 1.29e-13 70.1
Msa0550560 MtrunA17_Chr4g0060271 46.032 63 34 0 130 192 253 315 1.52e-13 70.5
Msa0550560 MtrunA17_Chr2g0322391 45.161 62 34 0 131 192 348 409 3.34e-13 69.3
Msa0550560 MtrunA17_Chr7g0248721 49.231 65 31 2 126 190 135 197 3.34e-13 67.4
Msa0550560 MtrunA17_Chr3g0128671 39.506 81 41 2 109 187 110 184 4.94e-13 67.8
Msa0550560 MtrunA17_Chr8g0387981 37.234 94 44 2 109 187 96 189 6.47e-13 67.8
Msa0550560 MtrunA17_Chr3g0129361 45.588 68 35 2 122 189 135 200 6.66e-13 66.2
Msa0550560 MtrunA17_Chr4g0074001 44.286 70 36 2 129 196 356 424 6.70e-13 68.2
Msa0550560 MtrunA17_Chr8g0383351 47.692 65 32 2 125 189 154 216 1.05e-12 66.2
Msa0550560 MtrunA17_Chr1g0150271 33.051 118 72 2 96 206 58 175 1.06e-12 66.2
Msa0550560 MtrunA17_Chr8g0383251 46.667 60 31 1 133 192 109 167 2.09e-12 64.3
Msa0550560 MtrunA17_Chr8g0386241 40.000 75 43 2 116 190 88 160 2.75e-12 63.9
Msa0550560 MtrunA17_Chr8g0335811 49.153 59 29 1 131 189 153 210 3.42e-12 64.7
Msa0550560 MtrunA17_Chr7g0244971 49.123 57 27 1 133 187 124 180 6.51e-11 61.6
Msa0550560 MtrunA17_Chr5g0447711 34.831 89 57 1 120 208 218 305 7.90e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550560 AT4G23550.1 44.000 250 113 7 1 226 1 247 1.87e-45 155
Msa0550560 AT4G01250.1 41.546 207 100 6 9 204 4 200 6.57e-41 143
Msa0550560 AT5G52830.1 57.018 114 48 1 111 224 145 257 4.41e-38 137
Msa0550560 AT2G34830.2 76.471 68 16 0 133 200 225 292 1.78e-33 126
Msa0550560 AT2G34830.1 76.471 68 16 0 133 200 216 283 1.91e-33 126
Msa0550560 AT1G30650.1 73.529 68 18 0 133 200 218 285 7.11e-32 122
Msa0550560 AT5G45050.1 56.842 95 41 0 106 200 1154 1248 2.28e-31 123
Msa0550560 AT5G45050.4 56.842 95 41 0 106 200 1015 1109 2.33e-31 123
Msa0550560 AT5G45050.2 56.842 95 41 0 106 200 1126 1220 2.46e-31 123
Msa0550560 AT3G58710.1 40.625 160 84 3 110 258 40 199 6.52e-31 116
Msa0550560 AT3G58710.2 38.922 167 87 3 107 258 32 198 6.48e-30 114
Msa0550560 AT1G29280.1 67.123 73 19 1 133 205 75 142 2.19e-29 112
Msa0550560 AT5G45260.1 48.515 101 49 2 106 203 1181 1281 7.61e-24 101
Msa0550560 AT2G30590.1 47.475 99 47 2 98 191 274 372 5.03e-23 97.4
Msa0550560 AT4G31550.1 46.875 96 46 2 110 201 221 315 8.00e-23 95.9
Msa0550560 AT2G24570.1 51.136 88 38 2 110 193 218 304 1.09e-21 92.8
Msa0550560 AT4G31550.2 45.263 95 47 2 111 201 221 314 1.40e-21 92.8
Msa0550560 AT5G46350.1 53.750 80 33 3 125 202 177 254 5.19e-21 91.3
Msa0550560 AT2G23320.1 46.988 83 39 2 111 189 216 297 2.63e-20 89.0
Msa0550560 AT1G29860.1 45.455 88 44 2 131 218 135 218 5.01e-20 87.8
Msa0550560 AT4G24240.1 49.398 83 37 2 111 189 257 338 7.63e-20 88.2
Msa0550560 AT4G18170.1 58.730 63 25 1 131 193 171 232 1.76e-19 86.7
Msa0550560 AT2G04880.2 32.984 191 98 7 29 195 161 345 2.02e-19 87.8
Msa0550560 AT2G04880.2 46.377 69 30 3 133 201 112 173 4.42e-11 63.2
Msa0550560 AT1G68150.1 34.746 118 75 1 96 213 201 316 6.79e-19 85.9
Msa0550560 AT2G04880.1 42.202 109 51 3 97 195 263 369 8.74e-19 86.3
Msa0550560 AT2G04880.1 46.377 69 30 3 133 201 112 173 3.65e-11 63.5
Msa0550560 AT5G28650.1 38.333 120 63 4 77 189 204 319 1.14e-18 84.7
Msa0550560 AT3G04670.1 48.810 84 37 2 110 189 238 319 1.91e-18 84.0
Msa0550560 AT4G30935.1 37.984 129 70 5 116 241 316 437 2.84e-18 84.3
Msa0550560 AT2G03340.1 34.307 137 71 5 88 220 384 505 4.44e-18 84.0
Msa0550560 AT2G03340.1 34.167 120 68 3 88 207 215 323 2.79e-14 72.8
Msa0550560 AT2G37260.3 42.222 90 51 1 100 189 237 325 4.72e-18 83.2
Msa0550560 AT2G37260.3 43.662 71 38 2 123 193 76 144 9.96e-12 64.7
Msa0550560 AT2G37260.2 42.222 90 51 1 100 189 235 323 4.73e-18 83.2
Msa0550560 AT2G37260.2 43.662 71 38 2 123 193 74 142 9.61e-12 64.7
Msa0550560 AT2G37260.1 42.222 90 51 1 100 189 317 405 5.89e-18 83.6
Msa0550560 AT2G37260.1 46.970 66 33 2 128 193 161 224 8.31e-12 65.5
Msa0550560 AT5G49520.1 54.839 62 27 1 131 192 220 280 5.90e-18 83.2
Msa0550560 AT2G21900.1 42.222 90 49 2 106 193 81 169 1.95e-17 79.0
Msa0550560 AT1G13960.1 50.000 70 33 2 120 189 398 465 2.12e-17 82.0
Msa0550560 AT1G13960.1 37.624 101 55 4 102 196 195 293 2.88e-14 72.8
Msa0550560 AT1G13960.2 50.000 70 33 2 120 189 245 312 2.91e-17 80.9
Msa0550560 AT1G13960.2 49.315 73 33 3 127 197 71 141 4.06e-14 72.0
Msa0550560 AT1G80840.1 39.130 115 58 3 113 217 117 229 2.99e-17 80.1
Msa0550560 AT3G62340.1 40.206 97 53 2 114 206 96 191 7.27e-17 79.0
Msa0550560 AT4G04450.2 45.833 72 39 0 131 202 197 268 1.66e-16 79.3
Msa0550560 AT4G04450.1 45.833 72 39 0 131 202 291 362 1.84e-16 79.3
Msa0550560 AT4G26640.5 46.154 78 40 2 120 197 194 269 2.62e-16 78.6
Msa0550560 AT4G26640.5 40.000 100 48 5 103 197 8 100 1.09e-12 67.8
Msa0550560 AT4G26640.6 46.154 78 40 2 120 197 194 269 2.62e-16 78.6
Msa0550560 AT4G26640.6 40.000 100 48 5 103 197 8 100 1.09e-12 67.8
Msa0550560 AT4G26640.4 46.154 78 40 2 120 197 194 269 2.62e-16 78.6
Msa0550560 AT4G26640.4 40.000 100 48 5 103 197 8 100 1.09e-12 67.8
Msa0550560 AT4G26640.3 46.154 78 40 2 120 197 194 269 2.62e-16 78.6
Msa0550560 AT4G26640.3 40.000 100 48 5 103 197 8 100 1.09e-12 67.8
Msa0550560 AT4G26640.1 46.154 78 40 2 120 197 298 373 3.22e-16 78.6
Msa0550560 AT4G26640.1 34.127 126 67 5 74 197 93 204 5.06e-13 68.9
Msa0550560 AT4G26640.7 46.154 78 40 2 120 197 330 405 3.25e-16 78.6
Msa0550560 AT4G26640.7 34.127 126 67 5 74 197 125 236 5.30e-13 68.9
Msa0550560 AT4G26640.2 46.154 78 40 2 120 197 370 445 3.31e-16 78.6
Msa0550560 AT4G26640.2 34.127 126 67 5 74 197 165 276 5.26e-13 68.9
Msa0550560 AT5G07100.2 42.222 90 51 1 108 197 117 205 3.39e-16 75.9
Msa0550560 AT5G07100.2 40.789 76 42 2 124 197 16 90 1.72e-11 62.8
Msa0550560 AT5G07100.4 42.222 90 51 1 108 197 117 205 3.39e-16 75.9
Msa0550560 AT5G07100.4 40.789 76 42 2 124 197 16 90 1.72e-11 62.8
Msa0550560 AT5G07100.5 42.222 90 51 1 108 197 117 205 3.39e-16 75.9
Msa0550560 AT5G07100.5 40.789 76 42 2 124 197 16 90 1.72e-11 62.8
Msa0550560 AT5G07100.3 42.222 90 51 1 108 197 117 205 3.39e-16 75.9
Msa0550560 AT5G07100.3 40.789 76 42 2 124 197 16 90 1.72e-11 62.8
Msa0550560 AT2G30250.1 47.368 76 38 2 118 193 315 388 3.86e-16 77.8
Msa0550560 AT4G26440.1 40.206 97 57 1 101 197 341 436 3.92e-16 78.6
Msa0550560 AT4G26440.1 41.772 79 42 3 133 209 179 255 5.41e-13 68.9
Msa0550560 AT5G07100.1 43.182 88 49 1 108 195 210 296 4.87e-16 77.0
Msa0550560 AT5G07100.1 40.789 76 42 2 124 197 109 183 3.03e-11 63.2
Msa0550560 AT1G62300.1 48.387 62 32 0 131 192 311 372 5.12e-16 78.2
Msa0550560 AT1G69310.4 40.000 105 59 3 88 189 100 203 6.19e-16 76.3
Msa0550560 AT1G69310.2 40.000 105 59 3 88 189 100 203 6.19e-16 76.3
Msa0550560 AT1G69310.1 40.000 105 59 3 88 189 100 203 6.19e-16 76.3
Msa0550560 AT4G22070.4 48.387 62 32 0 131 192 296 357 6.55e-16 77.8
Msa0550560 AT4G22070.3 48.387 62 32 0 131 192 296 357 6.55e-16 77.8
Msa0550560 AT4G22070.2 48.387 62 32 0 131 192 296 357 6.55e-16 77.8
Msa0550560 AT4G22070.1 48.387 62 32 0 131 192 296 357 6.55e-16 77.8
Msa0550560 AT2G47260.1 40.625 96 54 3 97 192 141 233 1.09e-15 76.3
Msa0550560 AT2G38470.1 38.596 114 62 4 120 231 351 458 1.57e-15 76.6
Msa0550560 AT2G38470.1 48.333 60 29 2 133 192 185 242 1.47e-11 64.7
Msa0550560 AT5G56270.1 46.154 78 40 2 118 195 474 549 2.31e-15 76.3
Msa0550560 AT5G56270.1 45.588 68 33 3 133 198 274 339 4.64e-12 66.2
Msa0550560 AT1G64000.1 50.794 63 30 1 128 190 110 171 5.45e-15 72.0
Msa0550560 AT1G69810.1 38.636 88 53 1 116 202 187 274 5.55e-15 74.7
Msa0550560 AT4G01720.1 49.206 63 32 0 130 192 237 299 6.26e-15 74.7
Msa0550560 AT5G41570.1 40.964 83 48 1 108 190 74 155 6.85e-15 71.6
Msa0550560 AT1G69810.2 38.636 88 53 1 116 202 129 216 7.43e-15 73.9
Msa0550560 AT5G26170.1 50.847 59 28 1 131 189 112 169 9.77e-15 70.9
Msa0550560 AT5G13080.1 50.000 60 29 1 131 190 66 124 1.06e-14 70.1
Msa0550560 AT5G15130.1 42.466 73 42 0 130 202 225 297 1.06e-14 74.3
Msa0550560 AT5G15130.2 42.466 73 42 0 130 202 183 255 1.25e-14 73.9
Msa0550560 AT3G01080.2 45.333 75 39 2 118 192 331 403 1.47e-14 73.6
Msa0550560 AT3G01080.2 45.588 68 35 2 133 200 206 271 5.94e-13 68.9
Msa0550560 AT2G25000.2 46.032 63 34 0 130 192 101 163 1.55e-14 71.6
Msa0550560 AT2G25000.4 46.032 63 34 0 130 192 101 163 1.55e-14 71.6
Msa0550560 AT1G18860.1 47.619 63 33 0 130 192 237 299 1.72e-14 73.6
Msa0550560 AT3G01080.1 45.333 75 39 2 118 192 293 365 1.84e-14 73.2
Msa0550560 AT3G01080.1 45.588 68 35 2 133 200 168 233 6.93e-13 68.6
Msa0550560 AT2G25000.3 46.032 63 34 0 130 192 123 185 2.29e-14 71.2
Msa0550560 AT2G25000.1 46.032 63 34 0 130 192 144 206 3.04e-14 71.2
Msa0550560 AT2G46130.1 42.500 80 45 1 111 190 9 87 4.06e-14 67.4
Msa0550560 AT4G31800.2 44.444 63 35 0 130 192 109 171 5.48e-14 70.1
Msa0550560 AT3G56400.1 50.847 59 27 1 131 187 119 177 5.51e-14 70.9
Msa0550560 AT4G31800.1 44.444 63 35 0 130 192 174 236 5.90e-14 70.9
Msa0550560 AT1G55600.1 37.037 81 50 1 112 192 287 366 6.79e-14 71.6
Msa0550560 AT2G46400.1 39.450 109 57 4 109 208 77 185 1.95e-13 69.3
Msa0550560 AT3G01970.1 49.153 59 29 1 131 189 64 121 3.27e-13 66.2
Msa0550560 AT3G01080.3 45.588 68 35 2 133 200 206 271 5.19e-13 68.6
Msa0550560 AT5G43290.1 42.529 87 47 2 103 189 87 170 5.83e-13 67.8
Msa0550560 AT4G39410.1 38.776 98 52 3 98 189 184 279 6.28e-13 68.2
Msa0550560 AT4G23810.1 41.379 87 48 2 126 209 152 238 8.38e-13 67.8
Msa0550560 AT2G44745.1 49.153 59 29 1 131 189 144 201 1.96e-12 65.5
Msa0550560 AT2G40740.1 38.298 94 53 2 133 221 174 267 1.99e-12 66.6
Msa0550560 AT2G40740.3 38.298 94 53 2 133 221 183 276 2.13e-12 66.6
Msa0550560 AT1G66560.1 38.144 97 58 1 133 227 104 200 3.00e-12 65.5
Msa0550560 AT4G11070.2 45.312 64 33 1 126 187 103 166 3.17e-12 65.9
Msa0550560 AT4G11070.1 45.312 64 33 1 126 187 135 198 3.48e-12 65.9
Msa0550560 AT5G24110.1 40.217 92 47 3 102 187 81 170 4.50e-12 65.5
Msa0550560 AT2G40750.1 47.368 57 28 1 133 187 153 209 7.93e-12 65.1
Msa0550560 AT5G64810.1 45.763 59 31 1 131 189 109 166 1.18e-11 62.8
Msa0550560 AT5G01900.1 52.632 57 25 1 133 187 111 167 1.61e-11 63.5
Msa0550560 AT1G66550.1 48.387 62 28 2 130 187 104 165 3.48e-11 62.4
Msa0550560 AT1G66550.2 48.387 62 28 2 130 187 99 160 3.50e-11 62.4
Msa0550560 AT4G12020.6 44.118 68 36 2 127 194 463 528 4.15e-11 63.9
Msa0550560 AT4G12020.8 44.118 68 36 2 127 194 463 528 4.15e-11 63.9
Msa0550560 AT4G12020.10 44.118 68 36 2 127 194 463 528 4.61e-11 63.5
Msa0550560 AT4G12020.3 44.118 68 36 2 127 194 463 528 4.74e-11 63.5
Msa0550560 AT4G12020.7 44.118 68 36 2 127 194 463 528 4.90e-11 63.5
Msa0550560 AT4G12020.1 44.118 68 36 2 127 194 463 528 4.90e-11 63.5
Msa0550560 AT4G12020.9 44.118 68 36 2 127 194 463 528 4.90e-11 63.5
Msa0550560 AT4G12020.4 44.118 68 36 2 127 194 463 528 4.92e-11 63.5
Msa0550560 AT4G12020.2 44.118 68 36 2 127 194 463 528 5.11e-11 63.5
Msa0550560 AT4G12020.5 44.118 68 36 2 127 194 396 461 5.38e-11 63.5
Msa0550560 AT4G12020.11 44.118 68 36 2 127 194 463 528 5.99e-11 63.2
Msa0550560 AT1G80590.1 50.877 57 26 1 133 187 86 142 7.39e-11 61.2

Find 50 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATGATGAGTTATTATT+TGG 0.129039 4_1:-46110162 Msa0550560:CDS
TTGACTTGTTCAGGCTCTTT+AGG 0.150517 4_1:+46110021 None:intergenic
AGAATAAAATTTGAATGATA+TGG 0.169511 4_1:-46108906 Msa0550560:three_prime_UTR
TTTGGATCCAAAAGTTTATT+TGG 0.173451 4_1:-46109441 Msa0550560:CDS
GGATGAGCTTGCATTCTTAA+TGG 0.203867 4_1:-46110256 Msa0550560:CDS
TAGATATATGGCTGCAGTTT+TGG 0.232281 4_1:-46109120 Msa0550560:three_prime_UTR
AAGTATGAAGCAACAAAATA+AGG 0.250850 4_1:-46109279 Msa0550560:CDS
GATGAAAGTGGATAGAAATT+AGG 0.255054 4_1:+46110075 None:intergenic
TTAATTTCTTTGACTTGTTC+AGG 0.260130 4_1:+46110012 None:intergenic
GGATAAGGTGAACCCTTTAT+TGG 0.261455 4_1:+46109530 None:intergenic
TGACTTGTTCAGGCTCTTTA+GGG 0.272887 4_1:+46110022 None:intergenic
GCTCTTCAAATTCATGAATA+AGG 0.283800 4_1:+46110106 None:intergenic
TCTTACTTATCTTGTAATAA+TGG 0.288869 4_1:-46110277 Msa0550560:exon
GCATGGGCATGGCGTAAATA+TGG 0.330729 4_1:-46109560 Msa0550560:CDS
TATGTAACCAAATAAACTTT+TGG 0.350399 4_1:+46109434 None:intergenic
AAAGAGCTAGAGGAACTTAT+TGG 0.359530 4_1:-46109179 Msa0550560:CDS
TGCAGAGATATATAGATATA+TGG 0.361327 4_1:-46109132 Msa0550560:three_prime_UTR
ATTCTTAATGGATTGGGATT+TGG 0.363394 4_1:-46110244 Msa0550560:CDS
AGCAATGTTAAATTTCTTCA+TGG 0.366703 4_1:+46108954 None:intergenic
CTAATATTGTGAGTCAGATA+TGG 0.378660 4_1:-46109002 Msa0550560:three_prime_UTR
AGTATGAAGCAACAAAATAA+GGG 0.388973 4_1:-46109278 Msa0550560:CDS
ACAAGTGGAAAAGAATCATT+TGG 0.397015 4_1:-46109459 Msa0550560:CDS
CTATAGTAGCTTCGTGGATA+AGG 0.400452 4_1:+46109515 None:intergenic
GCTTGCATTCTTAATGGATT+GGG 0.410458 4_1:-46110250 Msa0550560:CDS
AGCTTGCATTCTTAATGGAT+TGG 0.412282 4_1:-46110251 Msa0550560:CDS
CTCAATTATGTGATGATGGT+TGG 0.450519 4_1:-46109211 Msa0550560:CDS
AGTTCCTCTAGCTCTTTGCT+TGG 0.460231 4_1:+46109185 None:intergenic
GCTAATGAATTTCTTCGAGT+TGG 0.462513 4_1:+46109386 None:intergenic
ACTCGAAGAAATTCATTAGC+TGG 0.478608 4_1:-46109383 Msa0550560:CDS
CCAACCACTCAAGAAGATCT+TGG 0.481311 4_1:+46109240 None:intergenic
GAATTTCTTCGAGTTGGTTG+AGG 0.496581 4_1:+46109392 None:intergenic
TAGCAGTTCTAAAGGATGTT+CGG 0.497075 4_1:-46109489 Msa0550560:CDS
GATCTTCTTGAGTGGTTGGA+TGG 0.515896 4_1:-46109236 Msa0550560:CDS
CCAAGATCTTCTTGAGTGGT+TGG 0.520742 4_1:-46109240 Msa0550560:CDS
TATAGATGTAGCAGTTCTAA+AGG 0.522420 4_1:-46109497 Msa0550560:CDS
CTACATCTATAGTAGCTTCG+TGG 0.523670 4_1:+46109509 None:intergenic
TTTAGTGAAAATTGAAGATG+AGG 0.535441 4_1:-46109312 Msa0550560:CDS
CTCTATGTGATGCATGGGCA+TGG 0.552413 4_1:-46109571 Msa0550560:CDS
GGTGCTCAATTATGTGATGA+TGG 0.555369 4_1:-46109215 Msa0550560:CDS
AGTTGCGCGCAGAGTATACT+CGG 0.557785 4_1:+46109032 None:intergenic
ATTCATTAGCTGGAAGCACT+AGG 0.572420 4_1:-46109373 Msa0550560:CDS
ATGGTACTCTATGTGATGCA+TGG 0.587497 4_1:-46109577 Msa0550560:CDS
TGGTACTCTATGTGATGCAT+GGG 0.594523 4_1:-46109576 Msa0550560:CDS
GATTCCAAGCAAAGAGCTAG+AGG 0.602142 4_1:-46109189 Msa0550560:CDS
AAAATGGTTTGAGATGAAAG+TGG 0.604698 4_1:+46110063 None:intergenic
ATGACCAAGATCTTCTTGAG+TGG 0.626463 4_1:-46109244 Msa0550560:CDS
AAGAAAGTAACAGCAGTGGA+TGG 0.637681 4_1:-46109596 Msa0550560:CDS
ATGTTCGGCGAAGAAACAAG+TGG 0.637909 4_1:-46109474 Msa0550560:CDS
GTATGAAGCAACAAAATAAG+GGG 0.642510 4_1:-46109277 Msa0550560:CDS
TGTGAAGAAAGTAACAGCAG+TGG 0.752611 4_1:-46109600 Msa0550560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAATAAAAAAAT+TGG + chr4_1:46109324-46109343 None:intergenic 0.0%
!! AAAATAAAAAATAAAAAAAT+TGG + chr4_1:46109324-46109343 None:intergenic 0.0%
!! AAAAAAGATGAGAAAAATAA+GGG + chr4_1:46108969-46108988 None:intergenic 15.0%
!! AGAAAAGATTATATTACTAT+AGG + chr4_1:46109377-46109396 None:intergenic 15.0%
!!! TGTTTCAAATTTATTTTTTG+AGG - chr4_1:46109405-46109424 Msa0550560:CDS 15.0%
!! AGAATAAAATTTGAATGATA+TGG - chr4_1:46110253-46110272 Msa0550560:CDS 15.0%
!! AAAAAAGATGAGAAAAATAA+GGG + chr4_1:46108969-46108988 None:intergenic 15.0%
!! AGAAAAGATTATATTACTAT+AGG + chr4_1:46109377-46109396 None:intergenic 15.0%
!!! TGTTTCAAATTTATTTTTTG+AGG - chr4_1:46109405-46109424 Msa0550560:CDS 15.0%
!! AGAATAAAATTTGAATGATA+TGG - chr4_1:46110253-46110272 Msa0550560:CDS 15.0%
!! TCTTACTTATCTTGTAATAA+TGG - chr4_1:46108882-46108901 Msa0550560:three_prime_UTR 20.0%
!! GAAAAAAGATGAGAAAAATA+AGG + chr4_1:46108970-46108989 None:intergenic 20.0%
!! CAGTATCTAAGTTTAAAAAA+AGG - chr4_1:46109214-46109233 Msa0550560:CDS 20.0%
!!! GATTTAAGATTTTTATGTTG+TGG - chr4_1:46109297-46109316 Msa0550560:CDS 20.0%
!!! ATTGTCTTTGTATTTTTGTT+TGG - chr4_1:46109345-46109364 Msa0550560:CDS 20.0%
!!! TATGTAACCAAATAAACTTT+TGG + chr4_1:46109728-46109747 None:intergenic 20.0%
!! TCTTACTTATCTTGTAATAA+TGG - chr4_1:46108882-46108901 Msa0550560:three_prime_UTR 20.0%
!! GAAAAAAGATGAGAAAAATA+AGG + chr4_1:46108970-46108989 None:intergenic 20.0%
!! CAGTATCTAAGTTTAAAAAA+AGG - chr4_1:46109214-46109233 Msa0550560:CDS 20.0%
!!! GATTTAAGATTTTTATGTTG+TGG - chr4_1:46109297-46109316 Msa0550560:CDS 20.0%
!!! ATTGTCTTTGTATTTTTGTT+TGG - chr4_1:46109345-46109364 Msa0550560:CDS 20.0%
!!! TATGTAACCAAATAAACTTT+TGG + chr4_1:46109728-46109747 None:intergenic 20.0%
! GATCATGATGAGTTATTATT+TGG - chr4_1:46108997-46109016 Msa0550560:three_prime_UTR 25.0%
!!! TTAGTAGTTTTTGAGAATTC+TGG + chr4_1:46109030-46109049 None:intergenic 25.0%
!!! TTAATTTCTTTGACTTGTTC+AGG + chr4_1:46109150-46109169 None:intergenic 25.0%
!! TTTTTAAACTTAGATACTGC+TGG + chr4_1:46109213-46109232 None:intergenic 25.0%
! CGTTATAATCATTTGCATAT+TGG - chr4_1:46109249-46109268 Msa0550560:CDS 25.0%
!!! TATTTTTTGAGGAAACCTAA+TGG - chr4_1:46109416-46109435 Msa0550560:CDS 25.0%
!! CGGATATAGAATTTTCTATT+TGG - chr4_1:46109472-46109491 Msa0550560:CDS 25.0%
! ATATGGACAAAAACCAATAA+AGG - chr4_1:46109616-46109635 Msa0550560:CDS 25.0%
! TATGGACAAAAACCAATAAA+GGG - chr4_1:46109617-46109636 Msa0550560:CDS 25.0%
! TTTGGATCCAAAAGTTTATT+TGG - chr4_1:46109718-46109737 Msa0550560:intron 25.0%
!! TCATCTTCAATTTTCACTAA+AGG + chr4_1:46109848-46109867 None:intergenic 25.0%
! TTTAGTGAAAATTGAAGATG+AGG - chr4_1:46109847-46109866 Msa0550560:intron 25.0%
! AAGTATGAAGCAACAAAATA+AGG - chr4_1:46109880-46109899 Msa0550560:intron 25.0%
! AGTATGAAGCAACAAAATAA+GGG - chr4_1:46109881-46109900 Msa0550560:intron 25.0%
! TGCAGAGATATATAGATATA+TGG - chr4_1:46110027-46110046 Msa0550560:CDS 25.0%
! AGCAATGTTAAATTTCTTCA+TGG + chr4_1:46110208-46110227 None:intergenic 25.0%
! GATCATGATGAGTTATTATT+TGG - chr4_1:46108997-46109016 Msa0550560:three_prime_UTR 25.0%
!!! TTAGTAGTTTTTGAGAATTC+TGG + chr4_1:46109030-46109049 None:intergenic 25.0%
!!! TTAATTTCTTTGACTTGTTC+AGG + chr4_1:46109150-46109169 None:intergenic 25.0%
!! TTTTTAAACTTAGATACTGC+TGG + chr4_1:46109213-46109232 None:intergenic 25.0%
! CGTTATAATCATTTGCATAT+TGG - chr4_1:46109249-46109268 Msa0550560:CDS 25.0%
!!! TATTTTTTGAGGAAACCTAA+TGG - chr4_1:46109416-46109435 Msa0550560:CDS 25.0%
!! CGGATATAGAATTTTCTATT+TGG - chr4_1:46109472-46109491 Msa0550560:CDS 25.0%
! ATATGGACAAAAACCAATAA+AGG - chr4_1:46109616-46109635 Msa0550560:CDS 25.0%
! TATGGACAAAAACCAATAAA+GGG - chr4_1:46109617-46109636 Msa0550560:CDS 25.0%
! TTTGGATCCAAAAGTTTATT+TGG - chr4_1:46109718-46109737 Msa0550560:intron 25.0%
!! TCATCTTCAATTTTCACTAA+AGG + chr4_1:46109848-46109867 None:intergenic 25.0%
! TTTAGTGAAAATTGAAGATG+AGG - chr4_1:46109847-46109866 Msa0550560:intron 25.0%
! AAGTATGAAGCAACAAAATA+AGG - chr4_1:46109880-46109899 Msa0550560:intron 25.0%
! AGTATGAAGCAACAAAATAA+GGG - chr4_1:46109881-46109900 Msa0550560:intron 25.0%
! TGCAGAGATATATAGATATA+TGG - chr4_1:46110027-46110046 Msa0550560:CDS 25.0%
! AGCAATGTTAAATTTCTTCA+TGG + chr4_1:46110208-46110227 None:intergenic 25.0%
!! ATTCTTAATGGATTGGGATT+TGG - chr4_1:46108915-46108934 Msa0550560:three_prime_UTR 30.0%
!! GAAAAATAAGGGTTTGTTGT+TGG + chr4_1:46108958-46108977 None:intergenic 30.0%
GCTCTTCAAATTCATGAATA+AGG + chr4_1:46109056-46109075 None:intergenic 30.0%
GATGAAAGTGGATAGAAATT+AGG + chr4_1:46109087-46109106 None:intergenic 30.0%
! AAAATGGTTTGAGATGAAAG+TGG + chr4_1:46109099-46109118 None:intergenic 30.0%
! AAGCTTTAATTAACCCTAAG+CGG - chr4_1:46109452-46109471 Msa0550560:CDS 30.0%
GAAAATTCTATATCCGCTTA+GGG + chr4_1:46109468-46109487 None:intergenic 30.0%
AGAAAATTCTATATCCGCTT+AGG + chr4_1:46109469-46109488 None:intergenic 30.0%
! TATAGATGTAGCAGTTCTAA+AGG - chr4_1:46109662-46109681 Msa0550560:intron 30.0%
ACAAGTGGAAAAGAATCATT+TGG - chr4_1:46109700-46109719 Msa0550560:intron 30.0%
GTATGAAGCAACAAAATAAG+GGG - chr4_1:46109882-46109901 Msa0550560:intron 30.0%
CTAATATTGTGAGTCAGATA+TGG - chr4_1:46110157-46110176 Msa0550560:CDS 30.0%
!! ATTCTTAATGGATTGGGATT+TGG - chr4_1:46108915-46108934 Msa0550560:three_prime_UTR 30.0%
!! GAAAAATAAGGGTTTGTTGT+TGG + chr4_1:46108958-46108977 None:intergenic 30.0%
GCTCTTCAAATTCATGAATA+AGG + chr4_1:46109056-46109075 None:intergenic 30.0%
GATGAAAGTGGATAGAAATT+AGG + chr4_1:46109087-46109106 None:intergenic 30.0%
! AAAATGGTTTGAGATGAAAG+TGG + chr4_1:46109099-46109118 None:intergenic 30.0%
! AAGCTTTAATTAACCCTAAG+CGG - chr4_1:46109452-46109471 Msa0550560:CDS 30.0%
GAAAATTCTATATCCGCTTA+GGG + chr4_1:46109468-46109487 None:intergenic 30.0%
AGAAAATTCTATATCCGCTT+AGG + chr4_1:46109469-46109488 None:intergenic 30.0%
! TATAGATGTAGCAGTTCTAA+AGG - chr4_1:46109662-46109681 Msa0550560:intron 30.0%
ACAAGTGGAAAAGAATCATT+TGG - chr4_1:46109700-46109719 Msa0550560:intron 30.0%
GTATGAAGCAACAAAATAAG+GGG - chr4_1:46109882-46109901 Msa0550560:intron 30.0%
CTAATATTGTGAGTCAGATA+TGG - chr4_1:46110157-46110176 Msa0550560:CDS 30.0%
! AGCTTGCATTCTTAATGGAT+TGG - chr4_1:46108908-46108927 Msa0550560:three_prime_UTR 35.0%
!! GCTTGCATTCTTAATGGATT+GGG - chr4_1:46108909-46108928 Msa0550560:three_prime_UTR 35.0%
TTGACTTACACTTGTCCATT+AGG + chr4_1:46109434-46109453 None:intergenic 35.0%
!! TAGCAGTTCTAAAGGATGTT+CGG - chr4_1:46109670-46109689 Msa0550560:intron 35.0%
GCTAATGAATTTCTTCGAGT+TGG + chr4_1:46109776-46109795 None:intergenic 35.0%
ACTCGAAGAAATTCATTAGC+TGG - chr4_1:46109776-46109795 Msa0550560:intron 35.0%
!! CTCAATTATGTGATGATGGT+TGG - chr4_1:46109948-46109967 Msa0550560:CDS 35.0%
AAAGAGCTAGAGGAACTTAT+TGG - chr4_1:46109980-46109999 Msa0550560:CDS 35.0%
! TAGATATATGGCTGCAGTTT+TGG - chr4_1:46110039-46110058 Msa0550560:CDS 35.0%
! AGCTTGCATTCTTAATGGAT+TGG - chr4_1:46108908-46108927 Msa0550560:three_prime_UTR 35.0%
!! GCTTGCATTCTTAATGGATT+GGG - chr4_1:46108909-46108928 Msa0550560:three_prime_UTR 35.0%
TTGACTTACACTTGTCCATT+AGG + chr4_1:46109434-46109453 None:intergenic 35.0%
!! TAGCAGTTCTAAAGGATGTT+CGG - chr4_1:46109670-46109689 Msa0550560:intron 35.0%
GCTAATGAATTTCTTCGAGT+TGG + chr4_1:46109776-46109795 None:intergenic 35.0%
ACTCGAAGAAATTCATTAGC+TGG - chr4_1:46109776-46109795 Msa0550560:intron 35.0%
!! CTCAATTATGTGATGATGGT+TGG - chr4_1:46109948-46109967 Msa0550560:CDS 35.0%
AAAGAGCTAGAGGAACTTAT+TGG - chr4_1:46109980-46109999 Msa0550560:CDS 35.0%
! TAGATATATGGCTGCAGTTT+TGG - chr4_1:46110039-46110058 Msa0550560:CDS 35.0%
GGATGAGCTTGCATTCTTAA+TGG - chr4_1:46108903-46108922 Msa0550560:three_prime_UTR 40.0%
AGCGAGAGAGCTTGTAAAAA+TGG + chr4_1:46109115-46109134 None:intergenic 40.0%
!! TGACTTGTTCAGGCTCTTTA+GGG + chr4_1:46109140-46109159 None:intergenic 40.0%
!! TTGACTTGTTCAGGCTCTTT+AGG + chr4_1:46109141-46109160 None:intergenic 40.0%
TGTGAAGAAAGTAACAGCAG+TGG - chr4_1:46109559-46109578 Msa0550560:CDS 40.0%
AAGAAAGTAACAGCAGTGGA+TGG - chr4_1:46109563-46109582 Msa0550560:CDS 40.0%
ATGGTACTCTATGTGATGCA+TGG - chr4_1:46109582-46109601 Msa0550560:CDS 40.0%
TGGTACTCTATGTGATGCAT+GGG - chr4_1:46109583-46109602 Msa0550560:CDS 40.0%
GGATAAGGTGAACCCTTTAT+TGG + chr4_1:46109632-46109651 None:intergenic 40.0%
CTATAGTAGCTTCGTGGATA+AGG + chr4_1:46109647-46109666 None:intergenic 40.0%
CTACATCTATAGTAGCTTCG+TGG + chr4_1:46109653-46109672 None:intergenic 40.0%
!! GAATTTCTTCGAGTTGGTTG+AGG + chr4_1:46109770-46109789 None:intergenic 40.0%
!! ATTCATTAGCTGGAAGCACT+AGG - chr4_1:46109786-46109805 Msa0550560:intron 40.0%
ATGACCAAGATCTTCTTGAG+TGG - chr4_1:46109915-46109934 Msa0550560:intron 40.0%
GGTGCTCAATTATGTGATGA+TGG - chr4_1:46109944-46109963 Msa0550560:intron 40.0%
GGATGAGCTTGCATTCTTAA+TGG - chr4_1:46108903-46108922 Msa0550560:three_prime_UTR 40.0%
AGCGAGAGAGCTTGTAAAAA+TGG + chr4_1:46109115-46109134 None:intergenic 40.0%
!! TGACTTGTTCAGGCTCTTTA+GGG + chr4_1:46109140-46109159 None:intergenic 40.0%
!! TTGACTTGTTCAGGCTCTTT+AGG + chr4_1:46109141-46109160 None:intergenic 40.0%
TGTGAAGAAAGTAACAGCAG+TGG - chr4_1:46109559-46109578 Msa0550560:CDS 40.0%
AAGAAAGTAACAGCAGTGGA+TGG - chr4_1:46109563-46109582 Msa0550560:CDS 40.0%
ATGGTACTCTATGTGATGCA+TGG - chr4_1:46109582-46109601 Msa0550560:CDS 40.0%
TGGTACTCTATGTGATGCAT+GGG - chr4_1:46109583-46109602 Msa0550560:CDS 40.0%
GGATAAGGTGAACCCTTTAT+TGG + chr4_1:46109632-46109651 None:intergenic 40.0%
CTATAGTAGCTTCGTGGATA+AGG + chr4_1:46109647-46109666 None:intergenic 40.0%
CTACATCTATAGTAGCTTCG+TGG + chr4_1:46109653-46109672 None:intergenic 40.0%
!! GAATTTCTTCGAGTTGGTTG+AGG + chr4_1:46109770-46109789 None:intergenic 40.0%
!! ATTCATTAGCTGGAAGCACT+AGG - chr4_1:46109786-46109805 Msa0550560:intron 40.0%
ATGACCAAGATCTTCTTGAG+TGG - chr4_1:46109915-46109934 Msa0550560:intron 40.0%
GGTGCTCAATTATGTGATGA+TGG - chr4_1:46109944-46109963 Msa0550560:intron 40.0%
ATGTTCGGCGAAGAAACAAG+TGG - chr4_1:46109685-46109704 Msa0550560:intron 45.0%
CCAACCACTCAAGAAGATCT+TGG + chr4_1:46109922-46109941 None:intergenic 45.0%
CCAAGATCTTCTTGAGTGGT+TGG - chr4_1:46109919-46109938 Msa0550560:intron 45.0%
GATCTTCTTGAGTGGTTGGA+TGG - chr4_1:46109923-46109942 Msa0550560:intron 45.0%
GATTCCAAGCAAAGAGCTAG+AGG - chr4_1:46109970-46109989 Msa0550560:CDS 45.0%
!! AGTTCCTCTAGCTCTTTGCT+TGG + chr4_1:46109977-46109996 None:intergenic 45.0%
ATGTTCGGCGAAGAAACAAG+TGG - chr4_1:46109685-46109704 Msa0550560:intron 45.0%
CCAACCACTCAAGAAGATCT+TGG + chr4_1:46109922-46109941 None:intergenic 45.0%
CCAAGATCTTCTTGAGTGGT+TGG - chr4_1:46109919-46109938 Msa0550560:intron 45.0%
GATCTTCTTGAGTGGTTGGA+TGG - chr4_1:46109923-46109942 Msa0550560:intron 45.0%
GATTCCAAGCAAAGAGCTAG+AGG - chr4_1:46109970-46109989 Msa0550560:CDS 45.0%
!! AGTTCCTCTAGCTCTTTGCT+TGG + chr4_1:46109977-46109996 None:intergenic 45.0%
CTCTATGTGATGCATGGGCA+TGG - chr4_1:46109588-46109607 Msa0550560:CDS 50.0%
GCATGGGCATGGCGTAAATA+TGG - chr4_1:46109599-46109618 Msa0550560:CDS 50.0%
AGTTGCGCGCAGAGTATACT+CGG + chr4_1:46110130-46110149 None:intergenic 50.0%
CTCTATGTGATGCATGGGCA+TGG - chr4_1:46109588-46109607 Msa0550560:CDS 50.0%
GCATGGGCATGGCGTAAATA+TGG - chr4_1:46109599-46109618 Msa0550560:CDS 50.0%
AGTTGCGCGCAGAGTATACT+CGG + chr4_1:46110130-46110149 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46108874 46110307 46108874 ID=Msa0550560;Name=Msa0550560
chr4_1 mRNA 46108874 46110307 46108874 ID=Msa0550560-mRNA-1;Parent=Msa0550560;Name=Msa0550560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=27|1|1|1|1|1|2|283|274
chr4_1 exon 46108874 46109646 46108874 ID=Msa0550560-mRNA-1:exon:12303;Parent=Msa0550560-mRNA-1
chr4_1 exon 46109946 46110307 46109946 ID=Msa0550560-mRNA-1:exon:12302;Parent=Msa0550560-mRNA-1
chr4_1 five_prime_UTR 46110281 46110307 46110281 ID=Msa0550560-mRNA-1:five_prime_utr;Parent=Msa0550560-mRNA-1
chr4_1 CDS 46109946 46110280 46109946 ID=Msa0550560-mRNA-1:cds;Parent=Msa0550560-mRNA-1
chr4_1 CDS 46109157 46109646 46109157 ID=Msa0550560-mRNA-1:cds;Parent=Msa0550560-mRNA-1
chr4_1 three_prime_UTR 46108874 46109156 46108874 ID=Msa0550560-mRNA-1:three_prime_utr;Parent=Msa0550560-mRNA-1
Gene Sequence

>Msa0550560

ATGGATGAGCTTGCATTCTTAATGGATTGGGATTTGGAAGCTATCAATGAAGTACCAACAACAAACCCTTATTTTTCTCATCTTTTTTCTGAACAAGATCATGATGAGTTATTATTTGGATGTTTTCCAGAATTCTCAAAAACTACTAATGTCCTTATTCATGAATTTGAAGAGCTTTGCAAACCTAATTTCTATCCACTTTCATCTCAAACCATTTTTACAAGCTCTCTCGCTATCCCTAAAGAGCCTGAACAAGTCAAAGAAATTAAAGCAGCAGACAAAGTAGCTTCTCATCAAGATCTGCAAGTTCCAGCAGTATCTAAGTTTAAAAAAAGCAAGAAAAACAAGAACAAGAGTGTTGTGAAGAAAGTAACAGCAGTGGATGGTACTCTATGTGATGCATGGGCATGGCGTAAATATGGACAAAAACCAATAAAGGGTTCACCTTATCCACGAAGCTACTATAGATGTAGCAGTTCTAAAGGATGTTCGGCGAAGAAACAAGTGGAAAAGAATCATTTGGATCCAAAAGTTTATTTGGTTACATACACTGCAGAACACAATCATCCTCAACCAACTCGAAGAAATTCATTAGCTGGAAGCACTAGGAAGAACAATATCTTAGTTACACATTCTTCAAAGACACCTTTAGTGAAAATTGAAGATGAGGTAAATGTGACAAGTATGAAGCAACAAAATAAGGGGTTTGAGAAAGATGACCAAGATCTTCTTGAGTGGTTGGATGGTGCTCAATTATGTGATGATGGTTGGATTCCAAGCAAAGAGCTAGAGGAACTTATTGGACTTGAGAATAAGTGTCAATAA
Protein sequence

>Msa0550560

MDELAFLMDWDLEAINEVPTTNPYFSHLFSEQDHDELLFGCFPEFSKTTNVLIHEFEELCKPNFYPLSSQTIFTSSLAIPKEPEQVKEIKAADKVASHQDLQVPAVSKFKKSKKNKNKSVVKKVTAVDGTLCDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSAKKQVEKNHLDPKVYLVTYTAEHNHPQPTRRNSLAGSTRKNNILVTHSSKTPLVKIEDEVNVTSMKQQNKGFEKDDQDLLEWLDGAQLCDDGWIPSKELEELIGLENKCQ*