Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874640 | XP_013451087.1 | 93.952 | 463 | 26 | 1 | 1 | 461 | 1 | 463 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874640 | sp|Q9ZWR8|ANTA_GENTR | 35.294 | 476 | 268 | 16 | 3 | 454 | 2 | 461 | 8.80e-84 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005260 | Msa0874640 | 0.802452 | 5.573548e-49 | -8.615850e-47 |
| Msa0052780 | Msa0874640 | 0.811767 | 5.937851e-51 | -8.615850e-47 |
| Msa0059440 | Msa0874640 | 0.809726 | 1.641349e-50 | -8.615850e-47 |
| Msa0071470 | Msa0874640 | 0.800929 | 1.144614e-48 | -8.615850e-47 |
| Msa0086360 | Msa0874640 | 0.803003 | 4.288096e-49 | -8.615850e-47 |
| Msa0090380 | Msa0874640 | 0.863167 | 3.020038e-64 | -8.615850e-47 |
| Msa0097570 | Msa0874640 | 0.814258 | 1.688709e-51 | -8.615850e-47 |
| Msa0603300 | Msa0874640 | 0.814381 | 1.585914e-51 | -8.615850e-47 |
| Msa0611060 | Msa0874640 | 0.858118 | 1.025758e-62 | -8.615850e-47 |
| Msa0615200 | Msa0874640 | 0.849581 | 2.949055e-60 | -8.615850e-47 |
| Msa0615210 | Msa0874640 | 0.817246 | 3.641730e-52 | -8.615850e-47 |
| Msa0631130 | Msa0874640 | 0.834795 | 2.437761e-56 | -8.615850e-47 |
| Msa0657340 | Msa0874640 | 0.809873 | 1.525939e-50 | -8.615850e-47 |
| Msa0669350 | Msa0874640 | 0.835182 | 1.947730e-56 | -8.615850e-47 |
| Msa0699800 | Msa0874640 | 0.807320 | 5.353703e-50 | -8.615850e-47 |
| Msa0701430 | Msa0874640 | 0.809544 | 1.795496e-50 | -8.615850e-47 |
| Msa0713060 | Msa0874640 | 0.819715 | 1.004208e-52 | -8.615850e-47 |
| Msa0716620 | Msa0874640 | 0.808437 | 3.097972e-50 | -8.615850e-47 |
| Msa0744540 | Msa0874640 | 0.807565 | 4.751063e-50 | -8.615850e-47 |
| Msa0744550 | Msa0874640 | 0.828017 | 1.135887e-54 | -8.615850e-47 |
| Msa0744560 | Msa0874640 | 0.831888 | 1.292767e-55 | -8.615850e-47 |
| Msa0744640 | Msa0874640 | 0.823012 | 1.741999e-53 | -8.615850e-47 |
| Msa0744710 | Msa0874640 | 0.813203 | 2.881928e-51 | -8.615850e-47 |
| Msa0746340 | Msa0874640 | 0.820842 | 5.540022e-53 | -8.615850e-47 |
| Msa0753930 | Msa0874640 | 0.814323 | 1.633242e-51 | -8.615850e-47 |
| Msa0795320 | Msa0874640 | 0.805117 | 1.558218e-49 | -8.615850e-47 |
| Msa0804870 | Msa0874640 | 0.857578 | 1.483921e-62 | -8.615850e-47 |
| Msa0826240 | Msa0874640 | 0.817744 | 2.812688e-52 | -8.615850e-47 |
| Msa0826380 | Msa0874640 | 0.824052 | 9.948898e-54 | -8.615850e-47 |
| Msa0826450 | Msa0874640 | 0.812997 | 3.198189e-51 | -8.615850e-47 |
| Msa0832950 | Msa0874640 | 0.825195 | 5.351129e-54 | -8.615850e-47 |
| Msa0841730 | Msa0874640 | 0.823173 | 1.597604e-53 | -8.615850e-47 |
| Msa0121240 | Msa0874640 | 0.801319 | 9.522681e-49 | -8.615850e-47 |
| Msa0137860 | Msa0874640 | 0.860907 | 1.488337e-63 | -8.615850e-47 |
| Msa0143640 | Msa0874640 | 0.812133 | 4.940745e-51 | -8.615850e-47 |
| Msa0145430 | Msa0874640 | 0.805317 | 1.415336e-49 | -8.615850e-47 |
| Msa0150620 | Msa0874640 | 0.842043 | 3.289363e-58 | -8.615850e-47 |
| Msa0153860 | Msa0874640 | 0.833624 | 4.792701e-56 | -8.615850e-47 |
| Msa0166250 | Msa0874640 | 0.817937 | 2.544586e-52 | -8.615850e-47 |
| Msa0185100 | Msa0874640 | 0.813764 | 2.170032e-51 | -8.615850e-47 |
| Msa0186240 | Msa0874640 | 0.820924 | 5.303968e-53 | -8.615850e-47 |
| Msa0193190 | Msa0874640 | 0.824459 | 7.980849e-54 | -8.615850e-47 |
| Msa0223140 | Msa0874640 | 0.810043 | 1.402367e-50 | -8.615850e-47 |
| Msa0383900 | Msa0874640 | 0.849053 | 4.139066e-60 | -8.615850e-47 |
| Msa0393100 | Msa0874640 | 0.857421 | 1.651028e-62 | -8.615850e-47 |
| Msa0400010 | Msa0874640 | 0.800988 | 1.113017e-48 | -8.615850e-47 |
| Msa0402800 | Msa0874640 | 0.853329 | 2.567424e-61 | -8.615850e-47 |
| Msa0414050 | Msa0874640 | 0.802426 | 5.641297e-49 | -8.615850e-47 |
| Msa0434300 | Msa0874640 | 0.828683 | 7.843209e-55 | -8.615850e-47 |
| Msa0434400 | Msa0874640 | 0.853075 | 3.035572e-61 | -8.615850e-47 |
| Msa0442860 | Msa0874640 | 0.803051 | 4.191272e-49 | -8.615850e-47 |
| Msa0443450 | Msa0874640 | 0.849295 | 3.544034e-60 | -8.615850e-47 |
| Msa0449620 | Msa0874640 | 0.808583 | 2.883537e-50 | -8.615850e-47 |
| Msa0480530 | Msa0874640 | 0.804327 | 2.277972e-49 | -8.615850e-47 |
| Msa0480540 | Msa0874640 | 0.826172 | 3.138881e-54 | -8.615850e-47 |
| Msa0480550 | Msa0874640 | 0.833446 | 5.309035e-56 | -8.615850e-47 |
| Msa0242720 | Msa0874640 | 0.807066 | 6.059494e-50 | -8.615850e-47 |
| Msa0246140 | Msa0874640 | 0.819590 | 1.072535e-52 | -8.615850e-47 |
| Msa0264680 | Msa0874640 | 0.815520 | 8.863839e-52 | -8.615850e-47 |
| Msa0272400 | Msa0874640 | 0.816504 | 5.345295e-52 | -8.615850e-47 |
| Msa0273070 | Msa0874640 | 0.808322 | 3.277994e-50 | -8.615850e-47 |
| Msa0281000 | Msa0874640 | 0.809189 | 2.140143e-50 | -8.615850e-47 |
| Msa0302510 | Msa0874640 | 0.827386 | 1.609913e-54 | -8.615850e-47 |
| Msa0302730 | Msa0874640 | 0.812971 | 3.240452e-51 | -8.615850e-47 |
| Msa0306310 | Msa0874640 | 0.852455 | 4.566213e-61 | -8.615850e-47 |
| Msa0312590 | Msa0874640 | 0.802978 | 4.339734e-49 | -8.615850e-47 |
| Msa0316470 | Msa0874640 | 0.811177 | 7.974966e-51 | -8.615850e-47 |
| Msa0319680 | Msa0874640 | 0.826787 | 2.239911e-54 | -8.615850e-47 |
| Msa0320170 | Msa0874640 | 0.807414 | 5.114437e-50 | -8.615850e-47 |
| Msa0332190 | Msa0874640 | 0.804484 | 2.112595e-49 | -8.615850e-47 |
| Msa0339720 | Msa0874640 | 0.807472 | 4.972023e-50 | -8.615850e-47 |
| Msa0345980 | Msa0874640 | 0.823239 | 1.541231e-53 | -8.615850e-47 |
| Msa0356580 | Msa0874640 | 0.808763 | 2.640094e-50 | -8.615850e-47 |
| Msa0488580 | Msa0874640 | 0.853392 | 2.463714e-61 | -8.615850e-47 |
| Msa0490320 | Msa0874640 | 0.818313 | 2.091679e-52 | -8.615850e-47 |
| Msa0493870 | Msa0874640 | 0.802259 | 6.106912e-49 | -8.615850e-47 |
| Msa0497690 | Msa0874640 | 0.802431 | 5.628241e-49 | -8.615850e-47 |
| Msa0497860 | Msa0874640 | 0.870900 | 1.028411e-66 | -8.615850e-47 |
| Msa0505640 | Msa0874640 | 0.818736 | 1.677654e-52 | -8.615850e-47 |
| Msa0522140 | Msa0874640 | 0.829284 | 5.611595e-55 | -8.615850e-47 |
| Msa0522170 | Msa0874640 | 0.824582 | 7.464740e-54 | -8.615850e-47 |
| Msa0534610 | Msa0874640 | 0.833438 | 5.333654e-56 | -8.615850e-47 |
| Msa0550550 | Msa0874640 | 0.836365 | 9.765085e-57 | -8.615850e-47 |
| Msa0550560 | Msa0874640 | 0.810211 | 1.290396e-50 | -8.615850e-47 |
| Msa0561110 | Msa0874640 | 0.801713 | 7.906335e-49 | -8.615850e-47 |
| Msa0573950 | Msa0874640 | 0.808918 | 2.445983e-50 | -8.615850e-47 |
| Msa0576560 | Msa0874640 | 0.837402 | 5.310665e-57 | -8.615850e-47 |
| Msa0580840 | Msa0874640 | 0.811495 | 6.802781e-51 | -8.615850e-47 |
| Msa0590810 | Msa0874640 | 0.838305 | 3.112172e-57 | -8.615850e-47 |
| Msa0848020 | Msa0874640 | 0.827924 | 1.195694e-54 | -8.615850e-47 |
| Msa0865810 | Msa0874640 | 0.807012 | 6.222971e-50 | -8.615850e-47 |
| Msa0865820 | Msa0874640 | 0.834028 | 3.796937e-56 | -8.615850e-47 |
| Msa0874640 | Msa0945130 | 0.838989 | 2.071842e-57 | -8.615850e-47 |
| Msa0874640 | Msa0966580 | 0.828097 | 1.086588e-54 | -8.615850e-47 |
| Msa0874640 | Msa1009940 | -0.800081 | 1.703785e-48 | -8.615850e-47 |
| Msa0874640 | Msa1016960 | 0.804765 | 1.846404e-49 | -8.615850e-47 |
| Msa0874640 | Msa1030210 | 0.841568 | 4.390595e-58 | -8.615850e-47 |
| Msa0874640 | Msa1035050 | 0.801021 | 1.095891e-48 | -8.615850e-47 |
| Msa0874640 | Msa1058200 | 0.820078 | 8.294783e-53 | -8.615850e-47 |
| Msa0874640 | Msa1061970 | 0.823813 | 1.131774e-53 | -8.615850e-47 |
| Msa0874640 | Msa1064240 | 0.817009 | 4.117069e-52 | -8.615850e-47 |
| Msa0874640 | Msa1069250 | 0.824040 | 1.001117e-53 | -8.615850e-47 |
| Msa0874640 | Msa1074200 | 0.800249 | 1.574847e-48 | -8.615850e-47 |
| Msa0874640 | Msa1075090 | 0.810929 | 9.025215e-51 | -8.615850e-47 |
| Msa0874640 | Msa1077970 | 0.830825 | 2.361005e-55 | -8.615850e-47 |
| Msa0874640 | Msa1102210 | 0.809100 | 2.235556e-50 | -8.615850e-47 |
| Msa0874640 | Msa1110900 | 0.814474 | 1.512627e-51 | -8.615850e-47 |
| Msa0874640 | Msa1114670 | 0.836891 | 7.174830e-57 | -8.615850e-47 |
| Msa0874640 | Msa1120580 | 0.837261 | 5.769529e-57 | -8.615850e-47 |
| Msa0874640 | Msa1131790 | 0.804185 | 2.438549e-49 | -8.615850e-47 |
| Msa0874640 | Msa1133700 | 0.804276 | 2.334540e-49 | -8.615850e-47 |
| Msa0874640 | Msa1136760 | 0.818793 | 1.628420e-52 | -8.615850e-47 |
| Msa0874640 | Msa1142390 | 0.801024 | 1.094132e-48 | -8.615850e-47 |
| Msa0874640 | Msa1154240 | 0.825166 | 5.436670e-54 | -8.615850e-47 |
| Msa0874640 | Msa1157110 | 0.853565 | 2.196766e-61 | -8.615850e-47 |
| Msa0874640 | Msa1159170 | 0.825623 | 4.236928e-54 | -8.615850e-47 |
| Msa0874640 | Msa1173150 | 0.814797 | 1.283068e-51 | -8.615850e-47 |
| Msa0874640 | Msa1174280 | 0.812269 | 4.614405e-51 | -8.615850e-47 |
| Msa0874640 | Msa1180430 | 0.820828 | 5.579967e-53 | -8.615850e-47 |
| Msa0874640 | Msa1180720 | 0.806639 | 7.460133e-50 | -8.615850e-47 |
| Msa0874640 | Msa1187490 | 0.806574 | 7.700484e-50 | -8.615850e-47 |
| Msa0874640 | Msa1202110 | 0.836020 | 1.195056e-56 | -8.615850e-47 |
| Msa0874640 | Msa1203810 | 0.821028 | 5.019518e-53 | -8.615850e-47 |
| Msa0874640 | Msa1211610 | 0.816849 | 4.473897e-52 | -8.615850e-47 |
| Msa0874640 | Msa1224510 | 0.816870 | 4.425607e-52 | -8.615850e-47 |
| Msa0874640 | Msa1225580 | 0.819495 | 1.127034e-52 | -8.615850e-47 |
| Msa0874640 | Msa1231710 | 0.820089 | 8.246131e-53 | -8.615850e-47 |
| Msa0874640 | Msa1231980 | 0.812596 | 3.916290e-51 | -8.615850e-47 |
| Msa0874640 | Msa1252810 | 0.820130 | 8.067905e-53 | -8.615850e-47 |
| Msa0874640 | Msa1254870 | 0.833088 | 6.517871e-56 | -8.615850e-47 |
| Msa0874640 | Msa1299480 | 0.808768 | 2.632943e-50 | -8.615850e-47 |
| Msa0874640 | Msa1312440 | 0.826737 | 2.301639e-54 | -8.615850e-47 |
| Msa0874640 | Msa1322150 | 0.809971 | 1.453241e-50 | -8.615850e-47 |
| Msa0874640 | Msa1328430 | 0.832850 | 7.471492e-56 | -8.615850e-47 |
| Msa0874640 | Msa1355510 | 0.814834 | 1.259217e-51 | -8.615850e-47 |
| Msa0874640 | Msa1386000 | 0.819351 | 1.215718e-52 | -8.615850e-47 |
| Msa0874640 | Msa1404050 | 0.815548 | 8.735895e-52 | -8.615850e-47 |
| Msa0874640 | Msa1413800 | 0.844630 | 6.711789e-59 | -8.615850e-47 |
| Msa0874640 | Msa1422230 | 0.833574 | 4.931180e-56 | -8.615850e-47 |
| Msa0874640 | Msa1433410 | 0.860328 | 2.230275e-63 | -8.615850e-47 |
| Msa0874640 | Msa1435320 | 0.855917 | 4.571355e-62 | -8.615850e-47 |
| Msa0874640 | Msa1436090 | 0.846699 | 1.843593e-59 | -8.615850e-47 |
| Msa0874640 | Msa1438470 | 0.810725 | 9.994623e-51 | -8.615850e-47 |
| Msa0874640 | Msa1443400 | 0.857967 | 1.137751e-62 | -8.615850e-47 |
| Msa0874640 | Msa1443620 | 0.827939 | 1.185589e-54 | -8.615850e-47 |
| Msa0874640 | Msa1443640 | 0.825749 | 3.956275e-54 | -8.615850e-47 |
| Msa0874640 | Msa1443990 | 0.814103 | 1.826744e-51 | -8.615850e-47 |
| Msa0874640 | Msa1448040 | 0.857601 | 1.461063e-62 | -8.615850e-47 |
| Msa0874640 | Msa1459920 | 0.844347 | 7.999755e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874640 | MtrunA17_Chr6g0455341 | 93.952 | 463 | 26 | 1 | 1 | 461 | 1 | 463 | 0.0 | 889 |
| Msa0874640 | MtrunA17_Chr6g0455361 | 80.260 | 461 | 90 | 1 | 1 | 461 | 1 | 460 | 0.0 | 766 |
| Msa0874640 | MtrunA17_Chr6g0455351 | 70.259 | 464 | 99 | 4 | 1 | 461 | 1 | 428 | 0.0 | 654 |
| Msa0874640 | MtrunA17_Chr6g0454761 | 59.674 | 429 | 165 | 7 | 38 | 461 | 520 | 945 | 3.97e-172 | 508 |
| Msa0874640 | MtrunA17_Chr6g0454761 | 56.863 | 459 | 182 | 8 | 9 | 461 | 9 | 457 | 2.90e-168 | 498 |
| Msa0874640 | MtrunA17_Chr7g0219331 | 45.806 | 465 | 232 | 10 | 8 | 460 | 97 | 553 | 7.31e-141 | 415 |
| Msa0874640 | MtrunA17_Chr7g0219331 | 55.738 | 61 | 25 | 1 | 8 | 68 | 2 | 60 | 1.57e-14 | 75.9 |
| Msa0874640 | MtrunA17_Chr7g0219301 | 47.174 | 460 | 225 | 9 | 8 | 456 | 4 | 456 | 6.68e-139 | 420 |
| Msa0874640 | MtrunA17_Chr7g0219301 | 41.241 | 274 | 146 | 7 | 194 | 460 | 618 | 883 | 3.40e-57 | 202 |
| Msa0874640 | MtrunA17_Chr7g0219301 | 56.989 | 93 | 40 | 0 | 30 | 122 | 533 | 625 | 2.65e-29 | 121 |
| Msa0874640 | MtrunA17_Chr7g0219241 | 41.949 | 472 | 231 | 14 | 20 | 458 | 12 | 473 | 1.70e-108 | 329 |
| Msa0874640 | MtrunA17_Chr7g0219291 | 43.556 | 450 | 226 | 10 | 30 | 458 | 373 | 815 | 2.21e-106 | 334 |
| Msa0874640 | MtrunA17_Chr7g0219291 | 33.333 | 282 | 175 | 6 | 174 | 444 | 35 | 314 | 8.90e-37 | 144 |
| Msa0874640 | MtrunA17_Chr7g0219121 | 39.794 | 485 | 257 | 12 | 1 | 458 | 1 | 477 | 4.62e-100 | 308 |
| Msa0874640 | MtrunA17_Chr7g0219181 | 40.708 | 452 | 244 | 8 | 30 | 458 | 25 | 475 | 6.56e-100 | 307 |
| Msa0874640 | MtrunA17_Chr2g0323471 | 36.323 | 446 | 260 | 8 | 32 | 461 | 43 | 480 | 1.51e-83 | 265 |
| Msa0874640 | MtrunA17_Chr2g0323511 | 34.440 | 482 | 274 | 14 | 9 | 461 | 17 | 485 | 1.83e-82 | 263 |
| Msa0874640 | MtrunA17_Chr8g0339641 | 34.440 | 482 | 277 | 11 | 9 | 461 | 4 | 475 | 2.06e-75 | 244 |
| Msa0874640 | MtrunA17_Chr3g0087901 | 33.544 | 474 | 279 | 12 | 9 | 461 | 9 | 467 | 4.12e-75 | 243 |
| Msa0874640 | MtrunA17_Chr2g0323481 | 34.382 | 445 | 243 | 14 | 47 | 461 | 39 | 464 | 1.50e-70 | 231 |
| Msa0874640 | MtrunA17_Chr2g0323421 | 33.983 | 462 | 253 | 14 | 31 | 461 | 72 | 512 | 2.39e-70 | 232 |
| Msa0874640 | MtrunA17_Chr7g0219881 | 33.264 | 481 | 274 | 12 | 5 | 459 | 2 | 461 | 4.51e-70 | 229 |
| Msa0874640 | MtrunA17_Chr3g0124341 | 34.690 | 467 | 244 | 13 | 32 | 459 | 29 | 473 | 1.31e-68 | 226 |
| Msa0874640 | MtrunA17_Chr7g0219101 | 34.368 | 451 | 219 | 13 | 35 | 458 | 30 | 430 | 5.26e-68 | 223 |
| Msa0874640 | MtrunA17_Chr2g0323501 | 33.551 | 459 | 257 | 13 | 34 | 461 | 37 | 478 | 3.31e-67 | 223 |
| Msa0874640 | MtrunA17_Chr3g0083761 | 31.902 | 489 | 275 | 14 | 5 | 461 | 2 | 464 | 1.92e-65 | 218 |
| Msa0874640 | MtrunA17_Chr6g0454741 | 60.465 | 172 | 65 | 3 | 84 | 254 | 25 | 194 | 1.75e-63 | 205 |
| Msa0874640 | MtrunA17_Chr6g0454741 | 78.000 | 50 | 11 | 0 | 387 | 436 | 188 | 237 | 3.60e-18 | 83.6 |
| Msa0874640 | MtrunA17_Chr7g0219211 | 41.667 | 264 | 139 | 7 | 30 | 281 | 26 | 286 | 1.51e-53 | 182 |
| Msa0874640 | MtrunA17_Chr7g0219191 | 47.368 | 190 | 96 | 2 | 30 | 215 | 15 | 204 | 2.20e-49 | 168 |
| Msa0874640 | MtrunA17_Chr7g0219351 | 41.704 | 223 | 112 | 7 | 80 | 290 | 15 | 231 | 4.93e-49 | 167 |
| Msa0874640 | MtrunA17_Chr7g0219251 | 54.000 | 150 | 65 | 2 | 30 | 175 | 24 | 173 | 7.15e-45 | 154 |
| Msa0874640 | MtrunA17_Chr7g0219341 | 47.368 | 152 | 76 | 3 | 311 | 460 | 3 | 152 | 5.17e-41 | 143 |
| Msa0874640 | MtrunA17_Chr3g0092011 | 40.099 | 202 | 100 | 4 | 27 | 215 | 17 | 210 | 8.74e-37 | 136 |
| Msa0874640 | MtrunA17_Chr7g0219311 | 46.897 | 145 | 73 | 3 | 298 | 440 | 2 | 144 | 1.86e-36 | 131 |
| Msa0874640 | MtrunA17_Chr2g0323441 | 44.318 | 176 | 86 | 5 | 9 | 175 | 3 | 175 | 8.98e-35 | 128 |
| Msa0874640 | MtrunA17_Chr7g0219221 | 40.000 | 155 | 92 | 1 | 305 | 458 | 4 | 158 | 2.99e-31 | 117 |
| Msa0874640 | MtrunA17_Chr7g0219201 | 36.364 | 198 | 121 | 2 | 266 | 458 | 5 | 202 | 3.40e-29 | 113 |
| Msa0874640 | MtrunA17_Chr8g0371821 | 26.506 | 415 | 266 | 17 | 50 | 453 | 39 | 425 | 1.56e-27 | 114 |
| Msa0874640 | MtrunA17_Chr2g0334001 | 25.180 | 417 | 274 | 14 | 50 | 454 | 39 | 429 | 1.22e-23 | 102 |
| Msa0874640 | MtrunA17_Chr4g0001861 | 25.485 | 412 | 272 | 13 | 50 | 450 | 39 | 426 | 1.54e-23 | 102 |
| Msa0874640 | MtrunA17_Chr3g0134071 | 25.732 | 478 | 274 | 18 | 11 | 450 | 10 | 444 | 9.24e-21 | 94.7 |
| Msa0874640 | MtrunA17_Chr4g0053111 | 25.061 | 407 | 254 | 13 | 67 | 450 | 59 | 437 | 1.33e-20 | 94.0 |
| Msa0874640 | MtrunA17_Chr4g0053081 | 25.280 | 447 | 261 | 16 | 34 | 450 | 32 | 435 | 4.44e-20 | 92.4 |
| Msa0874640 | MtrunA17_Chr8g0354371 | 23.871 | 465 | 302 | 15 | 11 | 461 | 4 | 430 | 8.49e-20 | 91.7 |
| Msa0874640 | MtrunA17_Chr6g0467861 | 25.885 | 452 | 272 | 18 | 34 | 447 | 68 | 494 | 8.94e-19 | 89.0 |
| Msa0874640 | MtrunA17_Chr2g0311401 | 25.157 | 318 | 208 | 10 | 147 | 454 | 2 | 299 | 8.09e-18 | 84.0 |
| Msa0874640 | MtrunA17_Chr8g0386141 | 25.060 | 415 | 271 | 14 | 46 | 450 | 38 | 422 | 8.03e-17 | 82.4 |
| Msa0874640 | MtrunA17_Chr4g0010361 | 25.057 | 439 | 270 | 19 | 42 | 450 | 22 | 431 | 1.54e-16 | 81.6 |
| Msa0874640 | MtrunA17_Chr3g0134111 | 24.406 | 463 | 303 | 16 | 9 | 452 | 8 | 442 | 4.69e-16 | 80.1 |
| Msa0874640 | MtrunA17_Chr3g0087401 | 22.917 | 432 | 262 | 16 | 67 | 458 | 51 | 451 | 4.03e-15 | 77.4 |
| Msa0874640 | MtrunA17_Chr7g0253541 | 24.306 | 432 | 250 | 16 | 73 | 461 | 63 | 460 | 4.39e-15 | 77.4 |
| Msa0874640 | MtrunA17_Chr4g0053061 | 23.409 | 440 | 285 | 17 | 34 | 450 | 57 | 467 | 5.85e-15 | 77.0 |
| Msa0874640 | MtrunA17_Chr3g0113181 | 22.897 | 428 | 267 | 16 | 58 | 447 | 54 | 456 | 6.45e-15 | 76.6 |
| Msa0874640 | MtrunA17_Chr8g0359251 | 24.129 | 402 | 255 | 11 | 67 | 449 | 60 | 430 | 7.27e-15 | 76.6 |
| Msa0874640 | MtrunA17_Chr5g0408911 | 26.037 | 434 | 255 | 19 | 24 | 434 | 34 | 424 | 8.25e-15 | 76.3 |
| Msa0874640 | MtrunA17_Chr3g0087221 | 23.195 | 457 | 286 | 16 | 25 | 450 | 15 | 437 | 1.08e-14 | 75.9 |
| Msa0874640 | MtrunA17_Chr8g0374911 | 22.851 | 442 | 289 | 17 | 32 | 450 | 48 | 460 | 1.89e-14 | 75.5 |
| Msa0874640 | MtrunA17_Chr4g0072041 | 22.511 | 462 | 293 | 17 | 30 | 458 | 31 | 460 | 3.18e-14 | 74.7 |
| Msa0874640 | MtrunA17_Chr3g0092001 | 33.333 | 123 | 79 | 2 | 339 | 461 | 1 | 120 | 5.23e-14 | 68.6 |
| Msa0874640 | MtrunA17_Chr7g0253531 | 24.074 | 432 | 272 | 15 | 65 | 461 | 50 | 460 | 1.49e-13 | 72.4 |
| Msa0874640 | MtrunA17_Chr2g0323491 | 43.836 | 73 | 41 | 0 | 389 | 461 | 8 | 80 | 1.68e-13 | 65.9 |
| Msa0874640 | MtrunA17_Chr7g0252731 | 24.217 | 351 | 216 | 12 | 70 | 411 | 70 | 379 | 3.42e-12 | 68.2 |
| Msa0874640 | MtrunA17_Chr2g0323451 | 42.308 | 78 | 39 | 1 | 282 | 353 | 1 | 78 | 4.53e-12 | 61.6 |
| Msa0874640 | MtrunA17_Chr7g0252771 | 28.788 | 264 | 156 | 12 | 205 | 454 | 6 | 251 | 1.34e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874640 | AT5G39090.1 | 39.189 | 444 | 225 | 13 | 31 | 454 | 25 | 443 | 9.91e-93 | 288 |
| Msa0874640 | AT3G29635.1 | 37.660 | 470 | 260 | 12 | 9 | 461 | 4 | 457 | 1.79e-89 | 280 |
| Msa0874640 | AT5G39080.1 | 36.017 | 472 | 268 | 15 | 7 | 458 | 4 | 461 | 1.55e-88 | 278 |
| Msa0874640 | AT3G29670.1 | 35.230 | 457 | 280 | 10 | 10 | 460 | 5 | 451 | 6.91e-82 | 260 |
| Msa0874640 | AT5G39050.1 | 37.107 | 477 | 267 | 15 | 3 | 459 | 5 | 468 | 4.04e-80 | 256 |
| Msa0874640 | AT5G61160.1 | 33.188 | 458 | 283 | 10 | 9 | 456 | 4 | 448 | 8.53e-80 | 255 |
| Msa0874640 | AT3G29680.1 | 36.629 | 445 | 252 | 11 | 29 | 459 | 20 | 448 | 2.57e-79 | 253 |
| Msa0874640 | AT3G29590.1 | 34.267 | 464 | 267 | 14 | 10 | 459 | 10 | 449 | 1.98e-76 | 246 |
| Msa0874640 | AT1G03940.1 | 32.292 | 480 | 289 | 13 | 1 | 459 | 1 | 465 | 8.77e-68 | 224 |
| Msa0874640 | AT1G03495.1 | 34.097 | 349 | 198 | 13 | 1 | 332 | 1 | 334 | 1.10e-43 | 157 |
| Msa0874640 | AT5G23940.1 | 25.216 | 464 | 275 | 19 | 21 | 448 | 12 | 439 | 2.55e-24 | 105 |
| Msa0874640 | AT5G48930.1 | 25.635 | 433 | 268 | 17 | 38 | 450 | 28 | 426 | 1.50e-22 | 100 |
| Msa0874640 | AT3G29720.1 | 34.826 | 201 | 118 | 8 | 91 | 288 | 11 | 201 | 2.32e-21 | 92.8 |
| Msa0874640 | AT5G67150.1 | 25.463 | 432 | 286 | 12 | 34 | 452 | 29 | 437 | 1.30e-18 | 88.6 |
| Msa0874640 | AT5G07850.1 | 26.596 | 470 | 285 | 22 | 9 | 452 | 9 | 444 | 2.20e-18 | 87.8 |
| Msa0874640 | AT5G42830.1 | 24.941 | 421 | 246 | 16 | 64 | 452 | 58 | 440 | 5.49e-18 | 86.7 |
| Msa0874640 | AT2G19070.1 | 24.554 | 448 | 269 | 20 | 47 | 458 | 37 | 451 | 1.78e-17 | 85.1 |
| Msa0874640 | AT3G29690.1 | 30.189 | 159 | 101 | 3 | 297 | 454 | 25 | 174 | 2.95e-16 | 77.0 |
| Msa0874640 | AT3G48720.1 | 23.697 | 422 | 274 | 15 | 47 | 454 | 41 | 428 | 5.31e-16 | 80.5 |
| Msa0874640 | AT3G29636.1 | 29.557 | 203 | 82 | 6 | 246 | 444 | 23 | 168 | 9.23e-15 | 73.2 |
| Msa0874640 | AT5G41040.2 | 23.971 | 413 | 247 | 15 | 70 | 456 | 69 | 440 | 2.44e-14 | 75.1 |
| Msa0874640 | AT5G41040.1 | 23.971 | 413 | 247 | 15 | 70 | 456 | 85 | 456 | 3.57e-14 | 74.7 |
| Msa0874640 | AT1G31490.1 | 25.408 | 429 | 251 | 18 | 31 | 434 | 26 | 410 | 8.49e-14 | 73.6 |
| Msa0874640 | AT5G57840.1 | 22.296 | 453 | 292 | 17 | 31 | 458 | 21 | 438 | 2.28e-13 | 72.4 |
| Msa0874640 | AT1G65450.1 | 25.070 | 359 | 226 | 12 | 110 | 458 | 124 | 449 | 2.55e-13 | 72.0 |
| Msa0874640 | AT3G50280.2 | 27.240 | 279 | 164 | 9 | 147 | 413 | 14 | 265 | 8.86e-13 | 69.3 |
| Msa0874640 | AT3G50270.1 | 25.806 | 403 | 239 | 15 | 34 | 410 | 29 | 397 | 1.03e-12 | 70.1 |
| Msa0874640 | AT3G50280.1 | 27.240 | 279 | 164 | 9 | 147 | 413 | 144 | 395 | 1.24e-12 | 70.1 |
| Msa0874640 | AT5G67160.1 | 22.628 | 411 | 265 | 14 | 13 | 410 | 12 | 382 | 6.05e-11 | 64.7 |
| Msa0874640 | AT5G01210.1 | 33.333 | 147 | 85 | 6 | 309 | 447 | 314 | 455 | 8.88e-11 | 64.3 |
Find 59 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTTCTCCTATGTATTT+TGG | 0.099812 | 6_1:-10417107 | Msa0874640:CDS |
| CTCTTGCTGGTAACATAATT+TGG | 0.176044 | 6_1:-10417823 | Msa0874640:CDS |
| TCACTTTCTTTGATCTTCTA+TGG | 0.215533 | 6_1:-10417970 | Msa0874640:CDS |
| GTTGATGCTTTGATGAATTT+TGG | 0.216352 | 6_1:-10417398 | Msa0874640:CDS |
| TGGTTAGCTACTATGTTTAA+TGG | 0.256858 | 6_1:-10416945 | Msa0874640:CDS |
| GAAGTCATATCAACTTTCTT+AGG | 0.271346 | 6_1:+10416843 | None:intergenic |
| TACTATGTTTAATGGTAAAA+AGG | 0.281901 | 6_1:-10416937 | Msa0874640:CDS |
| GTTAAAATTTCCTCTATTGC+TGG | 0.309053 | 6_1:-10416912 | Msa0874640:CDS |
| AAGATCTTTGAAACTTTCAT+TGG | 0.324573 | 6_1:+10417730 | None:intergenic |
| GAAAGTGAGTGTTTGAGATT+TGG | 0.329141 | 6_1:+10417869 | None:intergenic |
| CCCTTAACATAGTTTATGAT+TGG | 0.340852 | 6_1:+10417782 | None:intergenic |
| ATTGCAAACTTCAACAACTT+TGG | 0.345314 | 6_1:+10418048 | None:intergenic |
| GAGGTTTATAGTATTGATTT+TGG | 0.348010 | 6_1:-10416876 | Msa0874640:CDS |
| TAATAAAAGTCTCAAGGTTT+GGG | 0.355038 | 6_1:-10417366 | Msa0874640:CDS |
| GCCAATCATAAACTATGTTA+AGG | 0.355832 | 6_1:-10417783 | Msa0874640:CDS |
| TCACACCATGCTGGTTTAGA+TGG | 0.356316 | 6_1:-10417575 | Msa0874640:CDS |
| CAACACTTTCTCCCTCTTGC+TGG | 0.361140 | 6_1:-10417836 | Msa0874640:CDS |
| AAGAAATTAGTTGGAAAAGA+TGG | 0.370504 | 6_1:-10417047 | Msa0874640:CDS |
| ATAATAAAAGTCTCAAGGTT+TGG | 0.375427 | 6_1:-10417367 | Msa0874640:CDS |
| AGAATTAGAACATGCAATAT+AGG | 0.378155 | 6_1:+10417520 | None:intergenic |
| CTTGATACAAAGAAATTAGT+TGG | 0.386537 | 6_1:-10417056 | Msa0874640:CDS |
| GGATGAATGAAGCTTTGAAT+AGG | 0.393461 | 6_1:-10417004 | Msa0874640:CDS |
| AACAATGGTGGAGTTGAGAT+TGG | 0.405228 | 6_1:-10416777 | Msa0874640:CDS |
| CTAAAGTTTGAAACTTCAAA+TGG | 0.406909 | 6_1:+10416692 | None:intergenic |
| CCTTGGTGATCCAGCAATAG+AGG | 0.425782 | 6_1:+10416902 | None:intergenic |
| AAAGTGAGAGGAAGTGAGGC+TGG | 0.426073 | 6_1:+10417986 | None:intergenic |
| GATGAATGAAGCTTTGAATA+GGG | 0.427868 | 6_1:-10417003 | Msa0874640:CDS |
| TGCTGGATCACCAAGGTTTG+AGG | 0.430883 | 6_1:-10416895 | Msa0874640:CDS |
| AACATAGTTTATGATTGGCT+TGG | 0.435231 | 6_1:+10417787 | None:intergenic |
| GATTGGTTTGGCTCTAAGTA+AGG | 0.444395 | 6_1:-10416760 | Msa0874640:CDS |
| ATGACTTCAACTGATAAAAC+AGG | 0.450314 | 6_1:-10416828 | Msa0874640:CDS |
| TGTTGAATGGAGCTAAAGAT+TGG | 0.451673 | 6_1:-10416965 | Msa0874640:CDS |
| CCAATCATAAACTATGTTAA+GGG | 0.452668 | 6_1:-10417782 | Msa0874640:CDS |
| ATTGGACTCAACAACATTGA+AGG | 0.466727 | 6_1:+10417748 | None:intergenic |
| TAGAAGAAAAGACGTTCAAC+TGG | 0.473498 | 6_1:+10417935 | None:intergenic |
| AGTGAGGCTGGTGATTGAAA+AGG | 0.477516 | 6_1:+10417998 | None:intergenic |
| AAATTGTGTTACAGGACAAA+AGG | 0.481421 | 6_1:-10417084 | Msa0874640:CDS |
| ATACTATAAACCTCAAACCT+TGG | 0.484183 | 6_1:+10416885 | None:intergenic |
| ATCACTTTGTTTCCAAACAA+TGG | 0.504774 | 6_1:-10417617 | Msa0874640:CDS |
| TGATTCTTCTTGTTGTGCCA+TGG | 0.512761 | 6_1:+10418072 | None:intergenic |
| GGCTCTAAGTAAGGAAGAGA+TGG | 0.521873 | 6_1:-10416751 | Msa0874640:CDS |
| GGACCATGATTTCATAAAAG+TGG | 0.528105 | 6_1:+10417541 | None:intergenic |
| TGGTGGAGTTGAGATTGGTT+TGG | 0.532650 | 6_1:-10416772 | Msa0874640:CDS |
| TTGATAGAAGATCATCATAG+TGG | 0.550037 | 6_1:-10417437 | Msa0874640:CDS |
| GGAATATCATCACACCATGC+TGG | 0.550715 | 6_1:-10417584 | Msa0874640:CDS |
| AGCAAAAGTTGAGCAACCAA+AGG | 0.562306 | 6_1:-10417183 | Msa0874640:CDS |
| AAGAAAAGACGTTCAACTGG+TGG | 0.567805 | 6_1:+10417938 | None:intergenic |
| ACCAAATAATAAAAGTCTCA+AGG | 0.572931 | 6_1:-10417372 | Msa0874640:CDS |
| GAAAGTAGGAATAACAATGG+TGG | 0.573498 | 6_1:-10416789 | Msa0874640:CDS |
| ACACAATTTCCAAAATACAT+AGG | 0.574370 | 6_1:+10417098 | None:intergenic |
| AGAAGATCAAAGAAAGTGAG+AGG | 0.592860 | 6_1:+10417974 | None:intergenic |
| CAAATTATGTTACCAGCAAG+AGG | 0.594605 | 6_1:+10417824 | None:intergenic |
| AAATACATAGGAGAAATTGA+AGG | 0.601552 | 6_1:+10417110 | None:intergenic |
| AAAGAAAGTGAGAGGAAGTG+AGG | 0.603554 | 6_1:+10417982 | None:intergenic |
| CCATGATTTCATAAAAGTGG+TGG | 0.604119 | 6_1:+10417544 | None:intergenic |
| ATTGGCTTGGATGAATCACT+TGG | 0.636506 | 6_1:+10417800 | None:intergenic |
| AGTGAAAGTAGGAATAACAA+TGG | 0.647980 | 6_1:-10416792 | Msa0874640:CDS |
| CCTCTATTGCTGGATCACCA+AGG | 0.655723 | 6_1:-10416902 | Msa0874640:CDS |
| AAATTATGTTACCAGCAAGA+GGG | 0.657111 | 6_1:+10417825 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAAAAAAGATGAATCA+AGG | + | chr6_1:10417285-10417304 | None:intergenic | 20.0% |
| !! | ATCAATGATCTATCAAAAAA+AGG | + | chr6_1:10417325-10417344 | None:intergenic | 20.0% |
| !!! | TTAAGCTTTTGAATATTTGA+AGG | + | chr6_1:10417490-10417509 | None:intergenic | 20.0% |
| !! | TACTATGTTTAATGGTAAAA+AGG | - | chr6_1:10417840-10417859 | Msa0874640:CDS | 20.0% |
| !!! | TATAGTATTGATTTTGGATT+TGG | - | chr6_1:10417907-10417926 | Msa0874640:CDS | 20.0% |
| !! | AAGATAAAAAAGATGAATCA+AGG | + | chr6_1:10417285-10417304 | None:intergenic | 20.0% |
| !! | ATCAATGATCTATCAAAAAA+AGG | + | chr6_1:10417325-10417344 | None:intergenic | 20.0% |
| !!! | TTAAGCTTTTGAATATTTGA+AGG | + | chr6_1:10417490-10417509 | None:intergenic | 20.0% |
| !! | TACTATGTTTAATGGTAAAA+AGG | - | chr6_1:10417840-10417859 | Msa0874640:CDS | 20.0% |
| !!! | TATAGTATTGATTTTGGATT+TGG | - | chr6_1:10417907-10417926 | Msa0874640:CDS | 20.0% |
| ! | AGAGTTTCATAGAAAAAAGA+GGG | + | chr6_1:10416884-10416903 | None:intergenic | 25.0% |
| ! | AAGAGTTTCATAGAAAAAAG+AGG | + | chr6_1:10416885-10416904 | None:intergenic | 25.0% |
| ! | CCAATCATAAACTATGTTAA+GGG | - | chr6_1:10416995-10417014 | Msa0874640:CDS | 25.0% |
| !!! | AAGATCTTTGAAACTTTCAT+TGG | + | chr6_1:10417050-10417069 | None:intergenic | 25.0% |
| ! | AGAATTAGAACATGCAATAT+AGG | + | chr6_1:10417260-10417279 | None:intergenic | 25.0% |
| !!! | AAAAAAGGTGTTAGATTTTC+AGG | + | chr6_1:10417310-10417329 | None:intergenic | 25.0% |
| ! | ACCAAATAATAAAAGTCTCA+AGG | - | chr6_1:10417405-10417424 | Msa0874640:CDS | 25.0% |
| !! | ACCTTGAGACTTTTATTATT+TGG | + | chr6_1:10417409-10417428 | None:intergenic | 25.0% |
| ! | ATAATAAAAGTCTCAAGGTT+TGG | - | chr6_1:10417410-10417429 | Msa0874640:CDS | 25.0% |
| ! | TAATAAAAGTCTCAAGGTTT+GGG | - | chr6_1:10417411-10417430 | Msa0874640:CDS | 25.0% |
| !! | AGTGTTTTTCATATTTAGTG+TGG | - | chr6_1:10417624-10417643 | Msa0874640:CDS | 25.0% |
| ! | AAATACATAGGAGAAATTGA+AGG | + | chr6_1:10417670-10417689 | None:intergenic | 25.0% |
| !! | TCAATTTCTCCTATGTATTT+TGG | - | chr6_1:10417670-10417689 | Msa0874640:CDS | 25.0% |
| ! | ACACAATTTCCAAAATACAT+AGG | + | chr6_1:10417682-10417701 | None:intergenic | 25.0% |
| !!! | TATTTTGGAAATTGTGTTAC+AGG | - | chr6_1:10417685-10417704 | Msa0874640:CDS | 25.0% |
| ! | CTTGATACAAAGAAATTAGT+TGG | - | chr6_1:10417721-10417740 | Msa0874640:CDS | 25.0% |
| ! | AAGAAATTAGTTGGAAAAGA+TGG | - | chr6_1:10417730-10417749 | Msa0874640:CDS | 25.0% |
| !!! | GATTTTTATGTGCTTTAGAA+GGG | - | chr6_1:10417752-10417771 | Msa0874640:CDS | 25.0% |
| !!! | GAGGTTTATAGTATTGATTT+TGG | - | chr6_1:10417901-10417920 | Msa0874640:CDS | 25.0% |
| ! | AGAGTTTCATAGAAAAAAGA+GGG | + | chr6_1:10416884-10416903 | None:intergenic | 25.0% |
| ! | AAGAGTTTCATAGAAAAAAG+AGG | + | chr6_1:10416885-10416904 | None:intergenic | 25.0% |
| ! | CCAATCATAAACTATGTTAA+GGG | - | chr6_1:10416995-10417014 | Msa0874640:CDS | 25.0% |
| !!! | AAGATCTTTGAAACTTTCAT+TGG | + | chr6_1:10417050-10417069 | None:intergenic | 25.0% |
| ! | AGAATTAGAACATGCAATAT+AGG | + | chr6_1:10417260-10417279 | None:intergenic | 25.0% |
| !!! | AAAAAAGGTGTTAGATTTTC+AGG | + | chr6_1:10417310-10417329 | None:intergenic | 25.0% |
| ! | ACCAAATAATAAAAGTCTCA+AGG | - | chr6_1:10417405-10417424 | Msa0874640:CDS | 25.0% |
| !! | ACCTTGAGACTTTTATTATT+TGG | + | chr6_1:10417409-10417428 | None:intergenic | 25.0% |
| ! | ATAATAAAAGTCTCAAGGTT+TGG | - | chr6_1:10417410-10417429 | Msa0874640:CDS | 25.0% |
| ! | TAATAAAAGTCTCAAGGTTT+GGG | - | chr6_1:10417411-10417430 | Msa0874640:CDS | 25.0% |
| !! | AGTGTTTTTCATATTTAGTG+TGG | - | chr6_1:10417624-10417643 | Msa0874640:CDS | 25.0% |
| ! | AAATACATAGGAGAAATTGA+AGG | + | chr6_1:10417670-10417689 | None:intergenic | 25.0% |
| !! | TCAATTTCTCCTATGTATTT+TGG | - | chr6_1:10417670-10417689 | Msa0874640:CDS | 25.0% |
| ! | ACACAATTTCCAAAATACAT+AGG | + | chr6_1:10417682-10417701 | None:intergenic | 25.0% |
| !!! | TATTTTGGAAATTGTGTTAC+AGG | - | chr6_1:10417685-10417704 | Msa0874640:CDS | 25.0% |
| ! | CTTGATACAAAGAAATTAGT+TGG | - | chr6_1:10417721-10417740 | Msa0874640:CDS | 25.0% |
| ! | AAGAAATTAGTTGGAAAAGA+TGG | - | chr6_1:10417730-10417749 | Msa0874640:CDS | 25.0% |
| !!! | GATTTTTATGTGCTTTAGAA+GGG | - | chr6_1:10417752-10417771 | Msa0874640:CDS | 25.0% |
| !!! | GAGGTTTATAGTATTGATTT+TGG | - | chr6_1:10417901-10417920 | Msa0874640:CDS | 25.0% |
| ATTGCAAACTTCAACAACTT+TGG | + | chr6_1:10416732-10416751 | None:intergenic | 30.0% | |
| TCACTTTCTTTGATCTTCTA+TGG | - | chr6_1:10416807-10416826 | Msa0874640:CDS | 30.0% | |
| AAATTATGTTACCAGCAAGA+GGG | + | chr6_1:10416955-10416974 | None:intergenic | 30.0% | |
| ! | AACATAGTTTATGATTGGCT+TGG | + | chr6_1:10416993-10417012 | None:intergenic | 30.0% |
| GCCAATCATAAACTATGTTA+AGG | - | chr6_1:10416994-10417013 | Msa0874640:CDS | 30.0% | |
| CCCTTAACATAGTTTATGAT+TGG | + | chr6_1:10416998-10417017 | None:intergenic | 30.0% | |
| ! | TCATGTGAAGTTTTCAAAAG+TGG | + | chr6_1:10417115-10417134 | None:intergenic | 30.0% |
| ! | ATCACTTTGTTTCCAAACAA+TGG | - | chr6_1:10417160-10417179 | Msa0874640:CDS | 30.0% |
| TTGATAGAAGATCATCATAG+TGG | - | chr6_1:10417340-10417359 | Msa0874640:CDS | 30.0% | |
| ! | GTTGATGCTTTGATGAATTT+TGG | - | chr6_1:10417379-10417398 | Msa0874640:CDS | 30.0% |
| !! | TTTAATTGCATCGTTTTTCG+CGG | + | chr6_1:10417449-10417468 | None:intergenic | 30.0% |
| AAAAACACTTCTTCAACCTT+TGG | + | chr6_1:10417613-10417632 | None:intergenic | 30.0% | |
| AAATTGTGTTACAGGACAAA+AGG | - | chr6_1:10417693-10417712 | Msa0874640:CDS | 30.0% | |
| !! | GGATTTTTATGTGCTTTAGA+AGG | - | chr6_1:10417751-10417770 | Msa0874640:CDS | 30.0% |
| !! | GATGAATGAAGCTTTGAATA+GGG | - | chr6_1:10417774-10417793 | Msa0874640:CDS | 30.0% |
| TTGAATAGGGTGAAAAATGA+TGG | - | chr6_1:10417787-10417806 | Msa0874640:CDS | 30.0% | |
| !! | AAAAATGATGGAGTGTTGAA+TGG | - | chr6_1:10417799-10417818 | Msa0874640:CDS | 30.0% |
| ! | TGGTTAGCTACTATGTTTAA+TGG | - | chr6_1:10417832-10417851 | Msa0874640:CDS | 30.0% |
| GTTAAAATTTCCTCTATTGC+TGG | - | chr6_1:10417865-10417884 | Msa0874640:CDS | 30.0% | |
| ATACTATAAACCTCAAACCT+TGG | + | chr6_1:10417895-10417914 | None:intergenic | 30.0% | |
| GAAGTCATATCAACTTTCTT+AGG | + | chr6_1:10417937-10417956 | None:intergenic | 30.0% | |
| ATGACTTCAACTGATAAAAC+AGG | - | chr6_1:10417949-10417968 | Msa0874640:CDS | 30.0% | |
| ! | CATTTTCTCTAAGTGAAAGT+AGG | - | chr6_1:10417974-10417993 | Msa0874640:CDS | 30.0% |
| AGTGAAAGTAGGAATAACAA+TGG | - | chr6_1:10417985-10418004 | Msa0874640:CDS | 30.0% | |
| ATTGCAAACTTCAACAACTT+TGG | + | chr6_1:10416732-10416751 | None:intergenic | 30.0% | |
| TCACTTTCTTTGATCTTCTA+TGG | - | chr6_1:10416807-10416826 | Msa0874640:CDS | 30.0% | |
| AAATTATGTTACCAGCAAGA+GGG | + | chr6_1:10416955-10416974 | None:intergenic | 30.0% | |
| ! | AACATAGTTTATGATTGGCT+TGG | + | chr6_1:10416993-10417012 | None:intergenic | 30.0% |
| GCCAATCATAAACTATGTTA+AGG | - | chr6_1:10416994-10417013 | Msa0874640:CDS | 30.0% | |
| CCCTTAACATAGTTTATGAT+TGG | + | chr6_1:10416998-10417017 | None:intergenic | 30.0% | |
| ! | TCATGTGAAGTTTTCAAAAG+TGG | + | chr6_1:10417115-10417134 | None:intergenic | 30.0% |
| ! | ATCACTTTGTTTCCAAACAA+TGG | - | chr6_1:10417160-10417179 | Msa0874640:CDS | 30.0% |
| TTGATAGAAGATCATCATAG+TGG | - | chr6_1:10417340-10417359 | Msa0874640:CDS | 30.0% | |
| ! | GTTGATGCTTTGATGAATTT+TGG | - | chr6_1:10417379-10417398 | Msa0874640:CDS | 30.0% |
| !! | TTTAATTGCATCGTTTTTCG+CGG | + | chr6_1:10417449-10417468 | None:intergenic | 30.0% |
| AAAAACACTTCTTCAACCTT+TGG | + | chr6_1:10417613-10417632 | None:intergenic | 30.0% | |
| AAATTGTGTTACAGGACAAA+AGG | - | chr6_1:10417693-10417712 | Msa0874640:CDS | 30.0% | |
| !! | GGATTTTTATGTGCTTTAGA+AGG | - | chr6_1:10417751-10417770 | Msa0874640:CDS | 30.0% |
| !! | GATGAATGAAGCTTTGAATA+GGG | - | chr6_1:10417774-10417793 | Msa0874640:CDS | 30.0% |
| TTGAATAGGGTGAAAAATGA+TGG | - | chr6_1:10417787-10417806 | Msa0874640:CDS | 30.0% | |
| !! | AAAAATGATGGAGTGTTGAA+TGG | - | chr6_1:10417799-10417818 | Msa0874640:CDS | 30.0% |
| ! | TGGTTAGCTACTATGTTTAA+TGG | - | chr6_1:10417832-10417851 | Msa0874640:CDS | 30.0% |
| GTTAAAATTTCCTCTATTGC+TGG | - | chr6_1:10417865-10417884 | Msa0874640:CDS | 30.0% | |
| ATACTATAAACCTCAAACCT+TGG | + | chr6_1:10417895-10417914 | None:intergenic | 30.0% | |
| GAAGTCATATCAACTTTCTT+AGG | + | chr6_1:10417937-10417956 | None:intergenic | 30.0% | |
| ATGACTTCAACTGATAAAAC+AGG | - | chr6_1:10417949-10417968 | Msa0874640:CDS | 30.0% | |
| ! | CATTTTCTCTAAGTGAAAGT+AGG | - | chr6_1:10417974-10417993 | Msa0874640:CDS | 30.0% |
| AGTGAAAGTAGGAATAACAA+TGG | - | chr6_1:10417985-10418004 | Msa0874640:CDS | 30.0% | |
| !!! | GGTTTTGTTGGTTCATGAAA+TGG | + | chr6_1:10416761-10416780 | None:intergenic | 35.0% |
| !! | GGTGATTGAAAAGGTTTTGT+TGG | + | chr6_1:10416773-10416792 | None:intergenic | 35.0% |
| AGAAGATCAAAGAAAGTGAG+AGG | + | chr6_1:10416806-10416825 | None:intergenic | 35.0% | |
| TAGAAGAAAAGACGTTCAAC+TGG | + | chr6_1:10416845-10416864 | None:intergenic | 35.0% | |
| ! | GAAAGTGAGTGTTTGAGATT+TGG | + | chr6_1:10416911-10416930 | None:intergenic | 35.0% |
| CAAATTATGTTACCAGCAAG+AGG | + | chr6_1:10416956-10416975 | None:intergenic | 35.0% | |
| CTCTTGCTGGTAACATAATT+TGG | - | chr6_1:10416954-10416973 | Msa0874640:CDS | 35.0% | |
| ATTGGACTCAACAACATTGA+AGG | + | chr6_1:10417032-10417051 | None:intergenic | 35.0% | |
| CCAATGCAAAAACCATTGTT+TGG | + | chr6_1:10417175-10417194 | None:intergenic | 35.0% | |
| ! | CCAAACAATGGTTTTTGCAT+TGG | - | chr6_1:10417172-10417191 | Msa0874640:CDS | 35.0% |
| ! | ATTTTCCATCTAAACCAGCA+TGG | + | chr6_1:10417210-10417229 | None:intergenic | 35.0% |
| CCATGATTTCATAAAAGTGG+TGG | + | chr6_1:10417236-10417255 | None:intergenic | 35.0% | |
| !! | CCACCACTTTTATGAAATCA+TGG | - | chr6_1:10417233-10417252 | Msa0874640:CDS | 35.0% |
| GGACCATGATTTCATAAAAG+TGG | + | chr6_1:10417239-10417258 | None:intergenic | 35.0% | |
| ! | GATGCTTTGATGAATTTTGG+TGG | - | chr6_1:10417382-10417401 | Msa0874640:CDS | 35.0% |
| !!! | CTCAAGGTTTGGGATTTTTT+CGG | - | chr6_1:10417421-10417440 | Msa0874640:CDS | 35.0% |
| !! | GGATGAATGAAGCTTTGAAT+AGG | - | chr6_1:10417773-10417792 | Msa0874640:CDS | 35.0% |
| TGTTGAATGGAGCTAAAGAT+TGG | - | chr6_1:10417812-10417831 | Msa0874640:CDS | 35.0% | |
| GAAAGTAGGAATAACAATGG+TGG | - | chr6_1:10417988-10418007 | Msa0874640:CDS | 35.0% | |
| !!! | GGTTTTGTTGGTTCATGAAA+TGG | + | chr6_1:10416761-10416780 | None:intergenic | 35.0% |
| !! | GGTGATTGAAAAGGTTTTGT+TGG | + | chr6_1:10416773-10416792 | None:intergenic | 35.0% |
| AGAAGATCAAAGAAAGTGAG+AGG | + | chr6_1:10416806-10416825 | None:intergenic | 35.0% | |
| TAGAAGAAAAGACGTTCAAC+TGG | + | chr6_1:10416845-10416864 | None:intergenic | 35.0% | |
| ! | GAAAGTGAGTGTTTGAGATT+TGG | + | chr6_1:10416911-10416930 | None:intergenic | 35.0% |
| CAAATTATGTTACCAGCAAG+AGG | + | chr6_1:10416956-10416975 | None:intergenic | 35.0% | |
| CTCTTGCTGGTAACATAATT+TGG | - | chr6_1:10416954-10416973 | Msa0874640:CDS | 35.0% | |
| ATTGGACTCAACAACATTGA+AGG | + | chr6_1:10417032-10417051 | None:intergenic | 35.0% | |
| CCAATGCAAAAACCATTGTT+TGG | + | chr6_1:10417175-10417194 | None:intergenic | 35.0% | |
| ! | CCAAACAATGGTTTTTGCAT+TGG | - | chr6_1:10417172-10417191 | Msa0874640:CDS | 35.0% |
| ! | ATTTTCCATCTAAACCAGCA+TGG | + | chr6_1:10417210-10417229 | None:intergenic | 35.0% |
| CCATGATTTCATAAAAGTGG+TGG | + | chr6_1:10417236-10417255 | None:intergenic | 35.0% | |
| !! | CCACCACTTTTATGAAATCA+TGG | - | chr6_1:10417233-10417252 | Msa0874640:CDS | 35.0% |
| GGACCATGATTTCATAAAAG+TGG | + | chr6_1:10417239-10417258 | None:intergenic | 35.0% | |
| ! | GATGCTTTGATGAATTTTGG+TGG | - | chr6_1:10417382-10417401 | Msa0874640:CDS | 35.0% |
| !!! | CTCAAGGTTTGGGATTTTTT+CGG | - | chr6_1:10417421-10417440 | Msa0874640:CDS | 35.0% |
| !! | GGATGAATGAAGCTTTGAAT+AGG | - | chr6_1:10417773-10417792 | Msa0874640:CDS | 35.0% |
| TGTTGAATGGAGCTAAAGAT+TGG | - | chr6_1:10417812-10417831 | Msa0874640:CDS | 35.0% | |
| GAAAGTAGGAATAACAATGG+TGG | - | chr6_1:10417988-10418007 | Msa0874640:CDS | 35.0% | |
| AAAGAAAGTGAGAGGAAGTG+AGG | + | chr6_1:10416798-10416817 | None:intergenic | 40.0% | |
| AAGAAAAGACGTTCAACTGG+TGG | + | chr6_1:10416842-10416861 | None:intergenic | 40.0% | |
| !! | ATTGGCTTGGATGAATCACT+TGG | + | chr6_1:10416980-10416999 | None:intergenic | 40.0% |
| AGCAAAAGTTGAGCAACCAA+AGG | - | chr6_1:10417594-10417613 | Msa0874640:CDS | 40.0% | |
| ! | AACAATGGTGGAGTTGAGAT+TGG | - | chr6_1:10418000-10418019 | Msa0874640:CDS | 40.0% |
| !! | GATTGGTTTGGCTCTAAGTA+AGG | - | chr6_1:10418017-10418036 | Msa0874640:CDS | 40.0% |
| AAAGAAAGTGAGAGGAAGTG+AGG | + | chr6_1:10416798-10416817 | None:intergenic | 40.0% | |
| AAGAAAAGACGTTCAACTGG+TGG | + | chr6_1:10416842-10416861 | None:intergenic | 40.0% | |
| !! | ATTGGCTTGGATGAATCACT+TGG | + | chr6_1:10416980-10416999 | None:intergenic | 40.0% |
| AGCAAAAGTTGAGCAACCAA+AGG | - | chr6_1:10417594-10417613 | Msa0874640:CDS | 40.0% | |
| ! | AACAATGGTGGAGTTGAGAT+TGG | - | chr6_1:10418000-10418019 | Msa0874640:CDS | 40.0% |
| !! | GATTGGTTTGGCTCTAAGTA+AGG | - | chr6_1:10418017-10418036 | Msa0874640:CDS | 40.0% |
| AGTGAGGCTGGTGATTGAAA+AGG | + | chr6_1:10416782-10416801 | None:intergenic | 45.0% | |
| GGAATATCATCACACCATGC+TGG | - | chr6_1:10417193-10417212 | Msa0874640:CDS | 45.0% | |
| !! | TCACACCATGCTGGTTTAGA+TGG | - | chr6_1:10417202-10417221 | Msa0874640:CDS | 45.0% |
| ! | TGGTGGAGTTGAGATTGGTT+TGG | - | chr6_1:10418005-10418024 | Msa0874640:CDS | 45.0% |
| !! | GGCTCTAAGTAAGGAAGAGA+TGG | - | chr6_1:10418026-10418045 | Msa0874640:CDS | 45.0% |
| AGTGAGGCTGGTGATTGAAA+AGG | + | chr6_1:10416782-10416801 | None:intergenic | 45.0% | |
| GGAATATCATCACACCATGC+TGG | - | chr6_1:10417193-10417212 | Msa0874640:CDS | 45.0% | |
| !! | TCACACCATGCTGGTTTAGA+TGG | - | chr6_1:10417202-10417221 | Msa0874640:CDS | 45.0% |
| ! | TGGTGGAGTTGAGATTGGTT+TGG | - | chr6_1:10418005-10418024 | Msa0874640:CDS | 45.0% |
| !! | GGCTCTAAGTAAGGAAGAGA+TGG | - | chr6_1:10418026-10418045 | Msa0874640:CDS | 45.0% |
| AAAGTGAGAGGAAGTGAGGC+TGG | + | chr6_1:10416794-10416813 | None:intergenic | 50.0% | |
| CAACACTTTCTCCCTCTTGC+TGG | - | chr6_1:10416941-10416960 | Msa0874640:CDS | 50.0% | |
| ! | CCTTGGTGATCCAGCAATAG+AGG | + | chr6_1:10417878-10417897 | None:intergenic | 50.0% |
| CCTCTATTGCTGGATCACCA+AGG | - | chr6_1:10417875-10417894 | Msa0874640:CDS | 50.0% | |
| TGCTGGATCACCAAGGTTTG+AGG | - | chr6_1:10417882-10417901 | Msa0874640:CDS | 50.0% | |
| AAAGTGAGAGGAAGTGAGGC+TGG | + | chr6_1:10416794-10416813 | None:intergenic | 50.0% | |
| CAACACTTTCTCCCTCTTGC+TGG | - | chr6_1:10416941-10416960 | Msa0874640:CDS | 50.0% | |
| ! | CCTTGGTGATCCAGCAATAG+AGG | + | chr6_1:10417878-10417897 | None:intergenic | 50.0% |
| CCTCTATTGCTGGATCACCA+AGG | - | chr6_1:10417875-10417894 | Msa0874640:CDS | 50.0% | |
| TGCTGGATCACCAAGGTTTG+AGG | - | chr6_1:10417882-10417901 | Msa0874640:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 10416707 | 10418092 | 10416707 | ID=Msa0874640;Name=Msa0874640 |
| chr6_1 | mRNA | 10416707 | 10418092 | 10416707 | ID=Msa0874640-mRNA-1;Parent=Msa0874640;Name=Msa0874640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|461 |
| chr6_1 | exon | 10416707 | 10418092 | 10416707 | ID=Msa0874640-mRNA-1:exon:3222;Parent=Msa0874640-mRNA-1 |
| chr6_1 | CDS | 10416707 | 10418092 | 10416707 | ID=Msa0874640-mRNA-1:cds;Parent=Msa0874640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
