Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403690 | XP_024631051.2 | 96.964 | 494 | 14 | 1 | 1 | 493 | 1 | 494 | 0.0 | 971 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403690 | sp|Q9LEV7|FBT6_ARATH | 58.799 | 483 | 199 | 0 | 5 | 487 | 21 | 503 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403690 | A0A1S2Y5D5 | 87.131 | 474 | 60 | 1 | 21 | 493 | 49 | 522 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa1403690 | 0.812775 | 3.577857e-51 | -8.615850e-47 |
| Msa0087550 | Msa1403690 | 0.800350 | 1.502264e-48 | -8.615850e-47 |
| Msa0090380 | Msa1403690 | 0.816166 | 6.360911e-52 | -8.615850e-47 |
| Msa0094710 | Msa1403690 | 0.807010 | 6.229628e-50 | -8.615850e-47 |
| Msa0100750 | Msa1403690 | 0.805252 | 1.460329e-49 | -8.615850e-47 |
| Msa1349830 | Msa1403690 | 0.808757 | 2.647338e-50 | -8.615850e-47 |
| Msa1355510 | Msa1403690 | 0.839488 | 1.538119e-57 | -8.615850e-47 |
| Msa1359610 | Msa1403690 | 0.839482 | 1.543186e-57 | -8.615850e-47 |
| Msa1403690 | Msa1412410 | 0.809802 | 1.580216e-50 | -8.615850e-47 |
| Msa1403690 | Msa1422230 | 0.807670 | 4.513416e-50 | -8.615850e-47 |
| Msa1403690 | Msa1427860 | 0.806906 | 6.550137e-50 | -8.615850e-47 |
| Msa1403690 | Msa1433410 | 0.811053 | 8.484622e-51 | -8.615850e-47 |
| Msa1403690 | Msa1435320 | 0.848121 | 7.500741e-60 | -8.615850e-47 |
| Msa1403690 | Msa1443400 | 0.844598 | 6.846320e-59 | -8.615850e-47 |
| Msa1403690 | Msa1443620 | 0.812305 | 4.533415e-51 | -8.615850e-47 |
| Msa1403690 | Msa1448040 | 0.844930 | 5.572916e-59 | -8.615850e-47 |
| Msa1403690 | Msa1459920 | 0.822000 | 2.992819e-53 | -8.615850e-47 |
| Msa0611060 | Msa1403690 | 0.805125 | 1.552236e-49 | -8.615850e-47 |
| Msa0639110 | Msa1403690 | 0.807971 | 3.895045e-50 | -8.615850e-47 |
| Msa0642920 | Msa1403690 | 0.824190 | 9.229080e-54 | -8.615850e-47 |
| Msa0693750 | Msa1403690 | 0.804045 | 2.607410e-49 | -8.615850e-47 |
| Msa0713060 | Msa1403690 | 0.865759 | 4.678499e-65 | -8.615850e-47 |
| Msa0744560 | Msa1403690 | 0.806129 | 9.554684e-50 | -8.615850e-47 |
| Msa0804870 | Msa1403690 | 0.824758 | 6.787403e-54 | -8.615850e-47 |
| Msa0816630 | Msa1403690 | 0.839923 | 1.185165e-57 | -8.615850e-47 |
| Msa0826380 | Msa1403690 | 0.818554 | 1.844688e-52 | -8.615850e-47 |
| Msa0826450 | Msa1403690 | 0.811548 | 6.626874e-51 | -8.615850e-47 |
| Msa0129640 | Msa1403690 | 0.807318 | 5.358603e-50 | -8.615850e-47 |
| Msa0137860 | Msa1403690 | 0.806328 | 8.677764e-50 | -8.615850e-47 |
| Msa0147790 | Msa1403690 | 0.826468 | 2.668264e-54 | -8.615850e-47 |
| Msa0238710 | Msa1403690 | 0.842289 | 2.831682e-58 | -8.615850e-47 |
| Msa1225580 | Msa1403690 | 0.827649 | 1.392093e-54 | -8.615850e-47 |
| Msa1252810 | Msa1403690 | 0.866665 | 2.414727e-65 | -8.615850e-47 |
| Msa1286220 | Msa1403690 | 0.800901 | 1.159607e-48 | -8.615850e-47 |
| Msa1299780 | Msa1403690 | 0.800966 | 1.124717e-48 | -8.615850e-47 |
| Msa1312440 | Msa1403690 | 0.801784 | 7.648137e-49 | -8.615850e-47 |
| Msa1329900 | Msa1403690 | 0.801600 | 8.341613e-49 | -8.615850e-47 |
| Msa1334840 | Msa1403690 | 0.806822 | 6.826135e-50 | -8.615850e-47 |
| Msa0366810 | Msa1403690 | 0.811038 | 8.551186e-51 | -8.615850e-47 |
| Msa0393100 | Msa1403690 | 0.829827 | 4.139812e-55 | -8.615850e-47 |
| Msa0402800 | Msa1403690 | 0.834875 | 2.327070e-56 | -8.615850e-47 |
| Msa0413870 | Msa1403690 | 0.805750 | 1.148206e-49 | -8.615850e-47 |
| Msa0449620 | Msa1403690 | 0.809382 | 1.945447e-50 | -8.615850e-47 |
| Msa0476770 | Msa1403690 | 0.801304 | 9.590361e-49 | -8.615850e-47 |
| Msa0480550 | Msa1403690 | 0.806260 | 8.968940e-50 | -8.615850e-47 |
| Msa1000800 | Msa1403690 | 0.816082 | 6.641932e-52 | -8.615850e-47 |
| Msa1011250 | Msa1403690 | 0.807038 | 6.144129e-50 | -8.615850e-47 |
| Msa1016960 | Msa1403690 | 0.823785 | 1.149045e-53 | -8.615850e-47 |
| Msa1030210 | Msa1403690 | 0.800458 | 1.427675e-48 | -8.615850e-47 |
| Msa1058200 | Msa1403690 | 0.826580 | 2.509463e-54 | -8.615850e-47 |
| Msa1064240 | Msa1403690 | 0.811943 | 5.436547e-51 | -8.615850e-47 |
| Msa1098970 | Msa1403690 | 0.821851 | 3.241370e-53 | -8.615850e-47 |
| Msa0246140 | Msa1403690 | 0.815967 | 7.045708e-52 | -8.615850e-47 |
| Msa0264680 | Msa1403690 | 0.839554 | 1.477977e-57 | -8.615850e-47 |
| Msa0276430 | Msa1403690 | 0.834279 | 3.286454e-56 | -8.615850e-47 |
| Msa0302510 | Msa1403690 | 0.815125 | 1.084864e-51 | -8.615850e-47 |
| Msa0302730 | Msa1403690 | 0.805573 | 1.250426e-49 | -8.615850e-47 |
| Msa0306310 | Msa1403690 | 0.848280 | 6.778351e-60 | -8.615850e-47 |
| Msa0316470 | Msa1403690 | 0.862043 | 6.699943e-64 | -8.615850e-47 |
| Msa0319680 | Msa1403690 | 0.837523 | 4.943201e-57 | -8.615850e-47 |
| Msa0332360 | Msa1403690 | 0.800241 | 1.580319e-48 | -8.615850e-47 |
| Msa0345980 | Msa1403690 | 0.800262 | 1.565224e-48 | -8.615850e-47 |
| Msa1127360 | Msa1403690 | 0.804307 | 2.299878e-49 | -8.615850e-47 |
| Msa1131790 | Msa1403690 | 0.821844 | 3.253581e-53 | -8.615850e-47 |
| Msa1154240 | Msa1403690 | 0.829272 | 5.648115e-55 | -8.615850e-47 |
| Msa1157110 | Msa1403690 | 0.808904 | 2.462216e-50 | -8.615850e-47 |
| Msa1173150 | Msa1403690 | 0.800233 | 1.586365e-48 | -8.615850e-47 |
| Msa1181060 | Msa1403690 | 0.820119 | 8.117386e-53 | -8.615850e-47 |
| Msa1199870 | Msa1403690 | 0.846419 | 2.198564e-59 | -8.615850e-47 |
| Msa1208990 | Msa1403690 | 0.803761 | 2.987768e-49 | -8.615850e-47 |
| Msa1212470 | Msa1403690 | 0.808532 | 2.956732e-50 | -8.615850e-47 |
| Msa1217260 | Msa1403690 | 0.815106 | 1.095457e-51 | -8.615850e-47 |
| Msa1218160 | Msa1403690 | 0.818505 | 1.893004e-52 | -8.615850e-47 |
| Msa1221220 | Msa1403690 | 0.811196 | 7.900855e-51 | -8.615850e-47 |
| Msa0488580 | Msa1403690 | 0.836285 | 1.023747e-56 | -8.615850e-47 |
| Msa0490320 | Msa1403690 | 0.800844 | 1.190792e-48 | -8.615850e-47 |
| Msa0497860 | Msa1403690 | 0.830916 | 2.243281e-55 | -8.615850e-47 |
| Msa0506370 | Msa1403690 | 0.809648 | 1.705720e-50 | -8.615850e-47 |
| Msa0550550 | Msa1403690 | 0.833409 | 5.422023e-56 | -8.615850e-47 |
| Msa0550560 | Msa1403690 | 0.821022 | 5.034589e-53 | -8.615850e-47 |
| Msa0560460 | Msa1403690 | 0.804014 | 2.646667e-49 | -8.615850e-47 |
| Msa0570700 | Msa1403690 | 0.820515 | 6.587259e-53 | -8.615850e-47 |
| Msa0573950 | Msa1403690 | 0.843385 | 1.447346e-58 | -8.615850e-47 |
| Msa0576560 | Msa1403690 | 0.843170 | 1.651594e-58 | -8.615850e-47 |
| Msa0601790 | Msa1403690 | 0.806396 | 8.394932e-50 | -8.615850e-47 |
| Msa0843700 | Msa1403690 | 0.804514 | 2.082786e-49 | -8.615850e-47 |
| Msa0848020 | Msa1403690 | 0.809896 | 1.508470e-50 | -8.615850e-47 |
| Msa0863940 | Msa1403690 | 0.824406 | 8.210674e-54 | -8.615850e-47 |
| Msa0930740 | Msa1403690 | 0.811604 | 6.441454e-51 | -8.615850e-47 |
| Msa0945130 | Msa1403690 | 0.806378 | 8.469916e-50 | -8.615850e-47 |
| Msa0965780 | Msa1403690 | 0.802581 | 5.241475e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403690 | MtrunA17_Chr1g0150041 | 79.553 | 313 | 28 | 3 | 1 | 312 | 1 | 278 | 2.20e-169 | 479 |
| Msa1403690 | MtrunA17_Chr1g0150001 | 47.581 | 496 | 247 | 4 | 2 | 487 | 5 | 497 | 3.72e-158 | 458 |
| Msa1403690 | MtrunA17_Chr1g0150031 | 98.485 | 198 | 3 | 0 | 296 | 493 | 2 | 199 | 5.04e-138 | 395 |
| Msa1403690 | MtrunA17_Chr1g0205221 | 26.517 | 445 | 306 | 8 | 1 | 439 | 80 | 509 | 6.78e-49 | 176 |
| Msa1403690 | MtrunA17_Chr3g0098661 | 25.458 | 491 | 299 | 9 | 28 | 456 | 3 | 488 | 7.29e-42 | 155 |
| Msa1403690 | MtrunA17_Chr2g0293351 | 24.324 | 407 | 280 | 8 | 51 | 440 | 27 | 422 | 3.07e-28 | 117 |
| Msa1403690 | MtrunA17_Chr3g0079271 | 26.108 | 406 | 277 | 10 | 62 | 455 | 120 | 514 | 9.85e-24 | 104 |
| Msa1403690 | MtrunA17_Chr2g0293371 | 24.752 | 303 | 203 | 7 | 151 | 440 | 42 | 332 | 5.31e-16 | 79.3 |
| Msa1403690 | MtrunA17_Chr2g0293361 | 24.268 | 239 | 161 | 4 | 210 | 440 | 1 | 227 | 3.06e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403690 | AT5G10820.1 | 58.799 | 483 | 199 | 0 | 5 | 487 | 21 | 503 | 0.0 | 585 |
| Msa1403690 | AT1G79710.2 | 47.216 | 485 | 252 | 2 | 4 | 487 | 11 | 492 | 9.81e-165 | 475 |
| Msa1403690 | AT1G79710.1 | 47.216 | 485 | 252 | 2 | 4 | 487 | 11 | 492 | 9.81e-165 | 475 |
| Msa1403690 | AT5G25050.1 | 45.380 | 487 | 259 | 2 | 5 | 487 | 9 | 492 | 5.57e-155 | 451 |
| Msa1403690 | AT5G25040.4 | 44.353 | 487 | 257 | 4 | 5 | 487 | 9 | 485 | 5.88e-141 | 414 |
| Msa1403690 | AT5G25040.2 | 42.188 | 512 | 257 | 5 | 5 | 487 | 9 | 510 | 1.91e-135 | 401 |
| Msa1403690 | AT1G79710.3 | 46.292 | 391 | 206 | 2 | 4 | 393 | 11 | 398 | 1.11e-127 | 377 |
| Msa1403690 | AT5G25040.1 | 44.731 | 427 | 226 | 3 | 5 | 430 | 9 | 426 | 1.02e-124 | 372 |
| Msa1403690 | AT5G25040.3 | 43.085 | 376 | 207 | 2 | 5 | 379 | 9 | 378 | 3.29e-105 | 319 |
| Msa1403690 | AT5G25040.5 | 47.093 | 344 | 169 | 3 | 147 | 487 | 5 | 338 | 5.20e-104 | 315 |
| Msa1403690 | AT2G32040.2 | 29.545 | 396 | 263 | 7 | 53 | 439 | 6 | 394 | 3.04e-49 | 175 |
| Msa1403690 | AT2G32040.1 | 29.369 | 412 | 273 | 9 | 37 | 439 | 123 | 525 | 6.27e-49 | 177 |
| Msa1403690 | AT5G54860.1 | 25.103 | 486 | 302 | 9 | 28 | 456 | 3 | 483 | 5.01e-44 | 162 |
| Msa1403690 | AT2G33280.1 | 24.818 | 411 | 284 | 9 | 62 | 459 | 103 | 501 | 2.08e-22 | 100 |
| Msa1403690 | AT1G04570.1 | 26.402 | 428 | 296 | 12 | 44 | 462 | 86 | 503 | 2.66e-22 | 100 |
| Msa1403690 | AT2G33280.3 | 25.250 | 400 | 274 | 9 | 73 | 459 | 6 | 393 | 3.90e-22 | 99.0 |
| Msa1403690 | AT1G04570.2 | 25.652 | 230 | 162 | 4 | 236 | 462 | 132 | 355 | 3.79e-17 | 83.6 |
| Msa1403690 | AT1G64890.1 | 22.193 | 383 | 287 | 6 | 53 | 431 | 30 | 405 | 1.80e-14 | 75.9 |
| Msa1403690 | AT2G33280.2 | 25.446 | 224 | 155 | 5 | 239 | 459 | 105 | 319 | 2.24e-14 | 75.1 |
Find 109 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGCATTGACAATTGTTC+TGG | 0.171571 | tig0022974:-59681 | Msa1403690:CDS |
| CTACGTTGGAATTTGAAAAT+TGG | 0.214262 | tig0022974:-58240 | Msa1403690:CDS |
| CATGGATTCTTAAACCTATC+TGG | 0.221992 | tig0022974:-60688 | Msa1403690:CDS |
| TCTGGTTCTGGTGCTCTTCT+TGG | 0.244927 | tig0022974:-60407 | Msa1403690:CDS |
| TTAGGGGTCGCTTGGTCTTA+TGG | 0.248348 | tig0022974:-59711 | Msa1403690:intron |
| GGTGCAGTGGCTTCAATAAT+AGG | 0.259173 | tig0022974:-58369 | Msa1403690:CDS |
| TAGATTTGTTACACTTGTTT+TGG | 0.260439 | tig0022974:-57956 | Msa1403690:CDS |
| GGTTTCTTTGTTCATCATCT+TGG | 0.287418 | tig0022974:-60371 | Msa1403690:CDS |
| AACTAGTCACTGATTACTAT+TGG | 0.295416 | tig0022974:-60772 | Msa1403690:CDS |
| ACTCCAGCAACGACAAAATA+AGG | 0.315707 | tig0022974:+60620 | None:intergenic |
| ATTTCTCTAAACTTCAGTTT+TGG | 0.318615 | tig0022974:+57819 | None:intergenic |
| TTGGTGGCCTTATATCAAAA+TGG | 0.333437 | tig0022974:-58065 | Msa1403690:CDS |
| CTGCTATGAATGTTGGGTTT+AGG | 0.335500 | tig0022974:+60846 | None:intergenic |
| TAAGAATCACAGGCAAAATA+AGG | 0.338692 | tig0022974:-58176 | Msa1403690:CDS |
| GTGCAGTGGCTTCAATAATA+GGG | 0.341061 | tig0022974:-58368 | Msa1403690:CDS |
| CCTGCATTGACAATTGTTCT+GGG | 0.345500 | tig0022974:-59680 | Msa1403690:CDS |
| ATATGCAATATCAGGTCTAT+TGG | 0.355056 | tig0022974:-58277 | Msa1403690:CDS |
| CCACACAAACTCTGCAAATC+AGG | 0.355919 | tig0022974:+60437 | None:intergenic |
| GCAGGAATATTCCTAGTATA+TGG | 0.356591 | tig0022974:-60827 | Msa1403690:CDS |
| TGTTCATCATCTTGGTCCTC+AGG | 0.362448 | tig0022974:-60363 | Msa1403690:intron |
| AATGTTCCTTCAATTCCTAA+TGG | 0.382788 | tig0022974:+58117 | None:intergenic |
| CTCCGACGATATCCCATTAC+TGG | 0.386877 | tig0022974:+60644 | None:intergenic |
| CAACTCCTATATGCAATATC+AGG | 0.388681 | tig0022974:-58285 | Msa1403690:CDS |
| GCCATTCTGTTGGTTCTGTT+AGG | 0.408858 | tig0022974:+60888 | None:intergenic |
| TGGTGGCCTTATATCAAAAT+GGG | 0.409984 | tig0022974:-58064 | Msa1403690:CDS |
| TTTGTCGTTGCTGGAGTTGT+TGG | 0.416881 | tig0022974:-60614 | Msa1403690:CDS |
| AGGAATAGTATTGAGGTTCC+AGG | 0.421524 | tig0022974:-60467 | Msa1403690:CDS |
| ATATTCCTGCTATGAATGTT+GGG | 0.421667 | tig0022974:+60840 | None:intergenic |
| AATATTCCTGCTATGAATGT+TGG | 0.422576 | tig0022974:+60839 | None:intergenic |
| ACGTAGAGTTGAACTGTTGA+AGG | 0.432809 | tig0022974:+60728 | None:intergenic |
| TCCTAATGTTGGGCCTTATG+AGG | 0.433740 | tig0022974:-57923 | Msa1403690:CDS |
| TCCTCATAAGGCCCAACATT+AGG | 0.441850 | tig0022974:+57922 | None:intergenic |
| TTGAATATGCAGGAGTTTGT+TGG | 0.457566 | tig0022974:-58408 | Msa1403690:intron |
| TTTGTGCTTAGTACCATCAT+AGG | 0.457654 | tig0022974:+58147 | None:intergenic |
| CTTGGCCTATACCATATACT+AGG | 0.458394 | tig0022974:+60816 | None:intergenic |
| AGCACAAAACTATGTCCATT+AGG | 0.463739 | tig0022974:-58132 | Msa1403690:CDS |
| CTATGTCCATTAGGAATTGA+AGG | 0.463884 | tig0022974:-58123 | Msa1403690:CDS |
| ATGGATTCTTAAACCTATCT+GGG | 0.464122 | tig0022974:-60687 | Msa1403690:CDS |
| GTTGGTATAATCTATGCAAT+TGG | 0.464940 | tig0022974:-58390 | Msa1403690:CDS |
| ATATTCCTAGTATATGGTAT+AGG | 0.475760 | tig0022974:-60821 | Msa1403690:CDS |
| GAAGGAATCAACTCCTCATA+AGG | 0.481908 | tig0022974:+57910 | None:intergenic |
| AGGTGAGGTGAGTGTGGTTG+CGG | 0.485151 | tig0022974:-60561 | Msa1403690:CDS |
| CTTCTTGGTTATCTTGCTAG+TGG | 0.487565 | tig0022974:-60392 | Msa1403690:CDS |
| CCTGATTTGCAGAGTTTGTG+TGG | 0.489748 | tig0022974:-60437 | Msa1403690:CDS |
| TGAGGAGTTGATTCCTTCTG+AGG | 0.491264 | tig0022974:-57905 | Msa1403690:CDS |
| CTGATTTGCAGAGTTTGTGT+GGG | 0.494014 | tig0022974:-60436 | Msa1403690:CDS |
| ATCTATGAAAAGAGAACCAT+TGG | 0.500353 | tig0022974:-59650 | Msa1403690:CDS |
| GGTATAGGCCAAGGCTTCAC+AGG | 0.501541 | tig0022974:-60806 | Msa1403690:CDS |
| AGTCGGCCCTGCATTCTCTC+AGG | 0.502838 | tig0022974:-59292 | Msa1403690:intron |
| AATCAGTTCTAGTAACATGA+AGG | 0.503411 | tig0022974:+58019 | None:intergenic |
| CCCAGAACAATTGTCAATGC+AGG | 0.503491 | tig0022974:+59680 | None:intergenic |
| CTTGCATAATGAAAAGAAGC+AGG | 0.511118 | tig0022974:-59627 | Msa1403690:intron |
| CTATTGATGCTTGTATTGCA+AGG | 0.511611 | tig0022974:-60487 | Msa1403690:CDS |
| CTTATATCAAAATGGGGTGG+AGG | 0.513361 | tig0022974:-58057 | Msa1403690:CDS |
| AGCATTGATAGCCATTCTGT+TGG | 0.514790 | tig0022974:+60878 | None:intergenic |
| GTCTGCTACGATTGTTGCTG+TGG | 0.514938 | tig0022974:-60585 | Msa1403690:CDS |
| CTCATTTCACAAACCTCAGA+AGG | 0.515142 | tig0022974:+57892 | None:intergenic |
| TATTGCAAGGAATAGTATTG+AGG | 0.520684 | tig0022974:-60474 | Msa1403690:CDS |
| TGAATCTTGTTGTGTTGACA+TGG | 0.524137 | tig0022974:+60955 | None:intergenic |
| ATAGACCTGATATTGCATAT+AGG | 0.528384 | tig0022974:+58280 | None:intergenic |
| AATAAGGTGGATGCCTATGA+TGG | 0.535562 | tig0022974:-58160 | Msa1403690:CDS |
| AGAGTTGAACTGTTGAAGGT+TGG | 0.538340 | tig0022974:+60732 | None:intergenic |
| CAGATAGGTTTAAGAATCCA+TGG | 0.538409 | tig0022974:+60689 | None:intergenic |
| CTAGTATATGGTATAGGCCA+AGG | 0.539645 | tig0022974:-60815 | Msa1403690:CDS |
| AGAGTGAGCCTGTGAAGCCT+TGG | 0.539998 | tig0022974:+60798 | None:intergenic |
| TGCAAATCAGGAGCCAACCC+TGG | 0.542040 | tig0022974:+60449 | None:intergenic |
| TCGGTTAGAATGCCCCAGAT+AGG | 0.542383 | tig0022974:+60674 | None:intergenic |
| ATGTGTATTGATAGCATTGG+TGG | 0.544527 | tig0022974:-58081 | Msa1403690:CDS |
| CTAAACCCAACATTCATAGC+AGG | 0.546989 | tig0022974:-60845 | Msa1403690:CDS |
| AATGTAGGAACGACAATTCG+AGG | 0.547125 | tig0022974:-59432 | Msa1403690:CDS |
| ACTTAATCTTCATTCTACGT+TGG | 0.547948 | tig0022974:-58254 | Msa1403690:CDS |
| GATGCTGCTATAAGAATCAC+AGG | 0.548431 | tig0022974:-58186 | Msa1403690:CDS |
| CAATAAAGTGTCCTCAAGCA+TGG | 0.550340 | tig0022974:-59398 | Msa1403690:CDS |
| AGAGGTACCTGAGAGAATGC+AGG | 0.554272 | tig0022974:+59285 | None:intergenic |
| CTTAATGTAACCACTCATGA+AGG | 0.563754 | tig0022974:-59342 | Msa1403690:CDS |
| TTAAAAGAACAGCCAACCAT+AGG | 0.564884 | tig0022974:+57989 | None:intergenic |
| GAAAGGAACATGTAAAGAGA+TGG | 0.565527 | tig0022974:+59372 | None:intergenic |
| TAGTATTGAGGTTCCAGGGT+TGG | 0.566971 | tig0022974:-60462 | Msa1403690:CDS |
| TGTGGGAGGTGAGGTGAGTG+TGG | 0.567101 | tig0022974:-60567 | Msa1403690:CDS |
| TCCTAACAGAACCAACAGAA+TGG | 0.568379 | tig0022974:-60889 | Msa1403690:CDS |
| CGTTGCTGGAGTTGTTGGAA+CGG | 0.568419 | tig0022974:-60609 | Msa1403690:CDS |
| TCTGCTACGATTGTTGCTGT+GGG | 0.569735 | tig0022974:-60584 | Msa1403690:CDS |
| GAGTGGTTACATTAAGAGCA+AGG | 0.572992 | tig0022974:+59349 | None:intergenic |
| TGGTATACTGATTCAAAAGT+CGG | 0.575373 | tig0022974:-59309 | Msa1403690:CDS |
| TTATATCAAAATGGGGTGGA+GGG | 0.579386 | tig0022974:-58056 | Msa1403690:CDS |
| ATCAGTTCTAGTAACATGAA+GGG | 0.581853 | tig0022974:+58020 | None:intergenic |
| TGATATTGATGAAGAGACCT+TGG | 0.583427 | tig0022974:-57860 | Msa1403690:CDS |
| AGAGATGGCTTCCATGCTTG+AGG | 0.584725 | tig0022974:+59387 | None:intergenic |
| TGCAGTGGCTTCAATAATAG+GGG | 0.585973 | tig0022974:-58367 | Msa1403690:CDS |
| AATCTATGCAATTGGTGCAG+TGG | 0.592181 | tig0022974:-58382 | Msa1403690:CDS |
| TTAATGTGTATTGATAGCAT+TGG | 0.600486 | tig0022974:-58084 | Msa1403690:CDS |
| TTACATTAAGAGCAAGGGAA+AGG | 0.602871 | tig0022974:+59355 | None:intergenic |
| GGAATAGTATTGAGGTTCCA+GGG | 0.603259 | tig0022974:-60466 | Msa1403690:CDS |
| GCTACGATTGTTGCTGTGGG+AGG | 0.603973 | tig0022974:-60581 | Msa1403690:CDS |
| AGTGGTTACATTAAGAGCAA+GGG | 0.607736 | tig0022974:+59350 | None:intergenic |
| TTCCAGTAATGGGATATCGT+CGG | 0.608018 | tig0022974:-60646 | Msa1403690:CDS |
| GAATCACAGGCAAAATAAGG+TGG | 0.610591 | tig0022974:-58173 | Msa1403690:CDS |
| TCCCATTACTGGAAAAGCGT+CGG | 0.613298 | tig0022974:+60655 | None:intergenic |
| TCTGTTAGGATTGATAACAA+TGG | 0.623787 | tig0022974:+60902 | None:intergenic |
| TAGGAATATACTTCATACCA+TGG | 0.624013 | tig0022974:-60706 | Msa1403690:CDS |
| ATTTAAAGGAACAAGCTCCA+AGG | 0.627727 | tig0022974:+57843 | None:intergenic |
| GAGGTACCTGAGAGAATGCA+GGG | 0.635587 | tig0022974:+59286 | None:intergenic |
| GGCCTTATATCAAAATGGGG+TGG | 0.639767 | tig0022974:-58060 | Msa1403690:CDS |
| GATTGTTGCTGTGGGAGGTG+AGG | 0.648427 | tig0022974:-60576 | Msa1403690:CDS |
| GGGGTCGCTTGGTCTTATGG+CGG | 0.651608 | tig0022974:-59708 | Msa1403690:CDS |
| CAGTAATGGGATATCGTCGG+AGG | 0.679956 | tig0022974:-60643 | Msa1403690:CDS |
| TCAACAGTTCAACTCTACGT+AGG | 0.687400 | tig0022974:-60725 | Msa1403690:CDS |
| GGTGGCCTTATATCAAAATG+GGG | 0.688936 | tig0022974:-58063 | Msa1403690:CDS |
| TGGATTCTTAAACCTATCTG+GGG | 0.710158 | tig0022974:-60686 | Msa1403690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATAAATAAAATGTTT+AGG | - | tig0022974:58522-58541 | Msa1403690:intron | 10.0% |
| !!! | ATTTAGTTGATAAAATCTTA+AGG | + | tig0022974:58888-58907 | None:intergenic | 15.0% |
| !!! | CTGATTAAATACATTTTTTA+GGG | - | tig0022974:59313-59332 | Msa1403690:CDS | 15.0% |
| !!! | TGATTAAATACATTTTTTAG+GGG | - | tig0022974:59314-59333 | Msa1403690:CDS | 15.0% |
| !! | TAACAAAAGATAAATAAAGT+CGG | - | tig0022974:59789-59808 | Msa1403690:intron | 15.0% |
| !! | AATTCTATAAGAAAAAGAAA+TGG | + | tig0022974:60337-60356 | None:intergenic | 15.0% |
| !!! | GATCATGTTAATCATTTTTT+AGG | - | tig0022974:58749-58768 | Msa1403690:intron | 20.0% |
| !!! | GCTGATTAAATACATTTTTT+AGG | - | tig0022974:59312-59331 | Msa1403690:CDS | 20.0% |
| !!! | GATTAAATACATTTTTTAGG+GGG | - | tig0022974:59315-59334 | Msa1403690:CDS | 20.0% |
| !! | TTGAATACAAATTGTAAGTT+CGG | + | tig0022974:59610-59629 | None:intergenic | 20.0% |
| !! | AATAAGGTGAAAACAAATTA+TGG | - | tig0022974:59869-59888 | Msa1403690:intron | 20.0% |
| !!! | CTTTTAACATATAAGTACTT+AGG | + | tig0022974:60257-60276 | None:intergenic | 20.0% |
| ! | ATATTCCTAGTATATGGTAT+AGG | - | tig0022974:57957-57976 | Msa1403690:CDS | 25.0% |
| ! | AAAATAGAAAAACAAACCTG+AGG | + | tig0022974:58434-58453 | None:intergenic | 25.0% |
| ! | ACAACTAGACATACAAAATA+GGG | + | tig0022974:58459-58478 | None:intergenic | 25.0% |
| ! | TACAACTAGACATACAAAAT+AGG | + | tig0022974:58460-58479 | None:intergenic | 25.0% |
| ! | GCTATCAATAATTTGAATCA+TGG | - | tig0022974:58646-58665 | Msa1403690:intron | 25.0% |
| !!! | GAATCATGGTTTTAGTTTTT+AGG | - | tig0022974:58660-58679 | Msa1403690:intron | 25.0% |
| !!! | ATGGTTTTAGTTTTTAGGAT+TGG | - | tig0022974:58665-58684 | Msa1403690:intron | 25.0% |
| !! | ATTGAACGTTTTCAATTTCA+TGG | - | tig0022974:58813-58832 | Msa1403690:intron | 25.0% |
| !!! | AATGCTTCTGTTGTTATTTT+AGG | - | tig0022974:59049-59068 | Msa1403690:intron | 25.0% |
| !!! | ATGCTTCTGTTGTTATTTTA+GGG | - | tig0022974:59050-59069 | Msa1403690:intron | 25.0% |
| ! | AATCAGTATACCAGTAAAAA+TGG | + | tig0022974:59462-59481 | None:intergenic | 25.0% |
| ! | TTGTATTCAATTGCTTAGAT+TGG | - | tig0022974:59620-59639 | Msa1403690:intron | 25.0% |
| ! | ATTCATCTGCAAACAAAATA+CGG | + | tig0022974:59693-59712 | None:intergenic | 25.0% |
| ! | CTGGAAAACTTATAGAAATA+AGG | - | tig0022974:59853-59872 | Msa1403690:intron | 25.0% |
| ! | TTGTATGCAATTAATTGCTT+AGG | - | tig0022974:59996-60015 | Msa1403690:intron | 25.0% |
| ! | GTCATCTATAAACAACATAT+GGG | + | tig0022974:60072-60091 | None:intergenic | 25.0% |
| ! | AGTCATCTATAAACAACATA+TGG | + | tig0022974:60073-60092 | None:intergenic | 25.0% |
| !! | TTTTCACTGAAAACATCTTA+TGG | + | tig0022974:60192-60211 | None:intergenic | 25.0% |
| !!! | TGTAGTTTTTTAGATACTTG+TGG | + | tig0022974:60447-60466 | None:intergenic | 25.0% |
| !! | TTAATGTGTATTGATAGCAT+TGG | - | tig0022974:60694-60713 | Msa1403690:CDS | 25.0% |
| !!! | TAGATTTGTTACACTTGTTT+TGG | - | tig0022974:60822-60841 | Msa1403690:CDS | 25.0% |
| !! | TTTTTCTTGTTCCTAATGTT+GGG | - | tig0022974:60845-60864 | Msa1403690:CDS | 25.0% |
| ! | TCTGTTAGGATTGATAACAA+TGG | + | tig0022974:57879-57898 | None:intergenic | 30.0% |
| ATATTCCTGCTATGAATGTT+GGG | + | tig0022974:57941-57960 | None:intergenic | 30.0% | |
| AATATTCCTGCTATGAATGT+TGG | + | tig0022974:57942-57961 | None:intergenic | 30.0% | |
| ! | AACTAGTCACTGATTACTAT+TGG | - | tig0022974:58006-58025 | Msa1403690:CDS | 30.0% |
| TAGGAATATACTTCATACCA+TGG | - | tig0022974:58072-58091 | Msa1403690:CDS | 30.0% | |
| ATGGATTCTTAAACCTATCT+GGG | - | tig0022974:58091-58110 | Msa1403690:CDS | 30.0% | |
| TATTGCAAGGAATAGTATTG+AGG | - | tig0022974:58304-58323 | Msa1403690:CDS | 30.0% | |
| !! | AGTTCTGAGATTGTATAGAA+TGG | - | tig0022974:58783-58802 | Msa1403690:intron | 30.0% |
| !!! | TGCTTCTGTTGTTATTTTAG+GGG | - | tig0022974:59051-59070 | Msa1403690:intron | 30.0% |
| ATCTATGAAAAGAGAACCAT+TGG | - | tig0022974:59128-59147 | Msa1403690:intron | 30.0% | |
| TGATTTCACTTTGTGCAAAT+AGG | + | tig0022974:59213-59232 | None:intergenic | 30.0% | |
| ! | TTAGTTAGTTAGTGCTGAAT+TGG | - | tig0022974:59290-59309 | Msa1403690:intron | 30.0% |
| !! | TGGTATACTGATTCAAAAGT+CGG | - | tig0022974:59469-59488 | Msa1403690:intron | 30.0% |
| TTCATCTGCAAACAAAATAC+GGG | + | tig0022974:59692-59711 | None:intergenic | 30.0% | |
| ! | ATTGAGGTGTTTATCTAAAC+AGG | + | tig0022974:59721-59740 | None:intergenic | 30.0% |
| AAGTGATTAGAGCTTAATTG+AGG | + | tig0022974:59737-59756 | None:intergenic | 30.0% | |
| ! | TCTTTTGACATAAACACTTG+TGG | - | tig0022974:60126-60145 | Msa1403690:intron | 30.0% |
| TATCCAAACAGAGACTAAAA+AGG | - | tig0022974:60294-60313 | Msa1403690:intron | 30.0% | |
| GTTGGTATAATCTATGCAAT+TGG | - | tig0022974:60388-60407 | Msa1403690:CDS | 30.0% | |
| ATAGACCTGATATTGCATAT+AGG | + | tig0022974:60501-60520 | None:intergenic | 30.0% | |
| ATATGCAATATCAGGTCTAT+TGG | - | tig0022974:60501-60520 | Msa1403690:CDS | 30.0% | |
| ACTTAATCTTCATTCTACGT+TGG | - | tig0022974:60524-60543 | Msa1403690:CDS | 30.0% | |
| CTACGTTGGAATTTGAAAAT+TGG | - | tig0022974:60538-60557 | Msa1403690:CDS | 30.0% | |
| ATGACAACAAAAAAGTAGTC+AGG | + | tig0022974:60568-60587 | None:intergenic | 30.0% | |
| TAAGAATCACAGGCAAAATA+AGG | - | tig0022974:60602-60621 | Msa1403690:CDS | 30.0% | |
| AATGTTCCTTCAATTCCTAA+TGG | + | tig0022974:60664-60683 | None:intergenic | 30.0% | |
| ! | ATCAGTTCTAGTAACATGAA+GGG | + | tig0022974:60761-60780 | None:intergenic | 30.0% |
| ! | AATCAGTTCTAGTAACATGA+AGG | + | tig0022974:60762-60781 | None:intergenic | 30.0% |
| !! | GAACTGATTTTACTAACCTA+TGG | - | tig0022974:60773-60792 | Msa1403690:CDS | 30.0% |
| ! | TGATTTTACTAACCTATGGT+TGG | - | tig0022974:60777-60796 | Msa1403690:CDS | 30.0% |
| ! | GTTTTTCTTGTTCCTAATGT+TGG | - | tig0022974:60844-60863 | Msa1403690:CDS | 30.0% |
| !! | ACTTCAGTTTTGGCATTTAA+AGG | + | tig0022974:60952-60971 | None:intergenic | 30.0% |
| GCAGGAATATTCCTAGTATA+TGG | - | tig0022974:57951-57970 | Msa1403690:CDS | 35.0% | |
| CAGATAGGTTTAAGAATCCA+TGG | + | tig0022974:58092-58111 | None:intergenic | 35.0% | |
| CATGGATTCTTAAACCTATC+TGG | - | tig0022974:58090-58109 | Msa1403690:CDS | 35.0% | |
| TGGATTCTTAAACCTATCTG+GGG | - | tig0022974:58092-58111 | Msa1403690:CDS | 35.0% | |
| CTATTGATGCTTGTATTGCA+AGG | - | tig0022974:58291-58310 | Msa1403690:CDS | 35.0% | |
| GGTTTCTTTGTTCATCATCT+TGG | - | tig0022974:58407-58426 | Msa1403690:intron | 35.0% | |
| ATTACTTATAAGCGCTCTCT+GGG | + | tig0022974:58586-58605 | None:intergenic | 35.0% | |
| AATTACTTATAAGCGCTCTC+TGG | + | tig0022974:58587-58606 | None:intergenic | 35.0% | |
| ATTCCACTCATCAGACATTA+CGG | + | tig0022974:59032-59051 | None:intergenic | 35.0% | |
| ! | CTTTTCATTATGCAAGCCAA+TGG | + | tig0022974:59147-59166 | None:intergenic | 35.0% |
| CTTGCATAATGAAAAGAAGC+AGG | - | tig0022974:59151-59170 | Msa1403690:intron | 35.0% | |
| GTGCAAATAGGCTTATGATA+TGG | + | tig0022974:59201-59220 | None:intergenic | 35.0% | |
| !!! | ATACATTTTTTAGGGGGTAG+TGG | - | tig0022974:59321-59340 | Msa1403690:CDS | 35.0% |
| GAAAGGAACATGTAAAGAGA+TGG | + | tig0022974:59409-59428 | None:intergenic | 35.0% | |
| TTACATTAAGAGCAAGGGAA+AGG | + | tig0022974:59426-59445 | None:intergenic | 35.0% | |
| AGTGGTTACATTAAGAGCAA+GGG | + | tig0022974:59431-59450 | None:intergenic | 35.0% | |
| CTTAATGTAACCACTCATGA+AGG | - | tig0022974:59436-59455 | Msa1403690:CDS | 35.0% | |
| TCAATTTCCCGAAATATGAG+AGG | + | tig0022974:59514-59533 | None:intergenic | 35.0% | |
| ! | AGTCACTACATTTGAGATCA+CGG | - | tig0022974:59549-59568 | Msa1403690:intron | 35.0% |
| ! | ACATTTGAGATCACGGTTAT+CGG | - | tig0022974:59556-59575 | Msa1403690:intron | 35.0% |
| !!! | GCTTTTTTCATAAGCTCTTC+TGG | - | tig0022974:59834-59853 | Msa1403690:intron | 35.0% |
| AGCTATTGATGAACATCAGA+CGG | - | tig0022974:59948-59967 | Msa1403690:intron | 35.0% | |
| CTAATGGAATTGCTGAATAC+AGG | - | tig0022974:60036-60055 | Msa1403690:intron | 35.0% | |
| TAGATGACTAATGACCTGTT+TGG | - | tig0022974:60084-60103 | Msa1403690:intron | 35.0% | |
| TCAAACAAGTCAATCCAAAC+AGG | + | tig0022974:60101-60120 | None:intergenic | 35.0% | |
| AACACTTGTGGAAACTGTTT+AGG | - | tig0022974:60138-60157 | Msa1403690:intron | 35.0% | |
| CTGAAAACATCTTATGGACA+TGG | + | tig0022974:60186-60205 | None:intergenic | 35.0% | |
| !! | TCACCTTTTTAGTCTCTGTT+TGG | + | tig0022974:60300-60319 | None:intergenic | 35.0% |
| CAAACTCCTGCATATTCAAA+GGG | + | tig0022974:60369-60388 | None:intergenic | 35.0% | |
| ACAAACTCCTGCATATTCAA+AGG | + | tig0022974:60370-60389 | None:intergenic | 35.0% | |
| TTGAATATGCAGGAGTTTGT+TGG | - | tig0022974:60370-60389 | Msa1403690:CDS | 35.0% | |
| CAACTCCTATATGCAATATC+AGG | - | tig0022974:60493-60512 | Msa1403690:CDS | 35.0% | |
| TTTGTGCTTAGTACCATCAT+AGG | + | tig0022974:60634-60653 | None:intergenic | 35.0% | |
| AGCACAAAACTATGTCCATT+AGG | - | tig0022974:60646-60665 | Msa1403690:CDS | 35.0% | |
| CTATGTCCATTAGGAATTGA+AGG | - | tig0022974:60655-60674 | Msa1403690:CDS | 35.0% | |
| ! | ATGTGTATTGATAGCATTGG+TGG | - | tig0022974:60697-60716 | Msa1403690:CDS | 35.0% |
| !! | TTGGTGGCCTTATATCAAAA+TGG | - | tig0022974:60713-60732 | Msa1403690:CDS | 35.0% |
| !! | TGGTGGCCTTATATCAAAAT+GGG | - | tig0022974:60714-60733 | Msa1403690:CDS | 35.0% |
| TTATATCAAAATGGGGTGGA+GGG | - | tig0022974:60722-60741 | Msa1403690:CDS | 35.0% | |
| TTAAAAGAACAGCCAACCAT+AGG | + | tig0022974:60792-60811 | None:intergenic | 35.0% | |
| TGATATTGATGAAGAGACCT+TGG | - | tig0022974:60918-60937 | Msa1403690:CDS | 35.0% | |
| ATTTAAAGGAACAAGCTCCA+AGG | + | tig0022974:60938-60957 | None:intergenic | 35.0% | |
| TCCTAACAGAACCAACAGAA+TGG | - | tig0022974:57889-57908 | Msa1403690:CDS | 40.0% | |
| !! | AGCATTGATAGCCATTCTGT+TGG | + | tig0022974:57903-57922 | None:intergenic | 40.0% |
| CTGCTATGAATGTTGGGTTT+AGG | + | tig0022974:57935-57954 | None:intergenic | 40.0% | |
| CTAAACCCAACATTCATAGC+AGG | - | tig0022974:57933-57952 | Msa1403690:CDS | 40.0% | |
| CTTGGCCTATACCATATACT+AGG | + | tig0022974:57965-57984 | None:intergenic | 40.0% | |
| CTAGTATATGGTATAGGCCA+AGG | - | tig0022974:57963-57982 | Msa1403690:CDS | 40.0% | |
| AGAGTTGAACTGTTGAAGGT+TGG | + | tig0022974:58049-58068 | None:intergenic | 40.0% | |
| ACGTAGAGTTGAACTGTTGA+AGG | + | tig0022974:58053-58072 | None:intergenic | 40.0% | |
| TCAACAGTTCAACTCTACGT+AGG | - | tig0022974:58053-58072 | Msa1403690:CDS | 40.0% | |
| ! | TTCCAGTAATGGGATATCGT+CGG | - | tig0022974:58132-58151 | Msa1403690:CDS | 40.0% |
| ACTCCAGCAACGACAAAATA+AGG | + | tig0022974:58161-58180 | None:intergenic | 40.0% | |
| ! | AGGAATAGTATTGAGGTTCC+AGG | - | tig0022974:58311-58330 | Msa1403690:CDS | 40.0% |
| ! | GGAATAGTATTGAGGTTCCA+GGG | - | tig0022974:58312-58331 | Msa1403690:CDS | 40.0% |
| ! | CTGATTTGCAGAGTTTGTGT+GGG | - | tig0022974:58342-58361 | Msa1403690:CDS | 40.0% |
| !!! | AGTTTGTGTGGGTTTTGTTC+TGG | - | tig0022974:58353-58372 | Msa1403690:CDS | 40.0% |
| CTTCTTGGTTATCTTGCTAG+TGG | - | tig0022974:58386-58405 | Msa1403690:CDS | 40.0% | |
| TCAGGGTTAGAAAAGTCTCA+AGG | - | tig0022974:58560-58579 | Msa1403690:intron | 40.0% | |
| AGGATTGGAGTTGAGCAATT+TGG | - | tig0022974:58680-58699 | Msa1403690:intron | 40.0% | |
| TTGGAGTTGAGCAATTTGGT+TGG | - | tig0022974:58684-58703 | Msa1403690:intron | 40.0% | |
| AAAGAACTGCTGTACTGTAC+AGG | + | tig0022974:58934-58953 | None:intergenic | 40.0% | |
| ATACCGTAATGTCTGATGAG+TGG | - | tig0022974:59026-59045 | Msa1403690:intron | 40.0% | |
| !!! | TTGTTATTTTAGGGGTCGCT+TGG | - | tig0022974:59059-59078 | Msa1403690:intron | 40.0% |
| ! | TCCTGCATTGACAATTGTTC+TGG | - | tig0022974:59097-59116 | Msa1403690:intron | 40.0% |
| ! | CCTGCATTGACAATTGTTCT+GGG | - | tig0022974:59098-59117 | Msa1403690:intron | 40.0% |
| AATGTAGGAACGACAATTCG+AGG | - | tig0022974:59346-59365 | Msa1403690:CDS | 40.0% | |
| ! | CAATAAAGTGTCCTCAAGCA+TGG | - | tig0022974:59380-59399 | Msa1403690:CDS | 40.0% |
| GAGTGGTTACATTAAGAGCA+AGG | + | tig0022974:59432-59451 | None:intergenic | 40.0% | |
| GTAAAAATGGCCTTCATGAG+TGG | + | tig0022974:59449-59468 | None:intergenic | 40.0% | |
| !!! | CTCATGAAGGCCATTTTTAC+TGG | - | tig0022974:59449-59468 | Msa1403690:intron | 40.0% |
| CTCAGGTACCTCTCATATTT+CGG | - | tig0022974:59503-59522 | Msa1403690:intron | 40.0% | |
| TCAGGTACCTCTCATATTTC+GGG | - | tig0022974:59504-59523 | Msa1403690:intron | 40.0% | |
| TCTGCAAACAAAATACGGGA+TGG | + | tig0022974:59688-59707 | None:intergenic | 40.0% | |
| TAGCTAACTGCAGTGACTAA+TGG | - | tig0022974:60020-60039 | Msa1403690:intron | 40.0% | |
| CTATAAACAACATATGGGCC+TGG | + | tig0022974:60067-60086 | None:intergenic | 40.0% | |
| TTTCCTCCCTTTGAATATGC+AGG | - | tig0022974:60360-60379 | Msa1403690:intron | 40.0% | |
| AATCTATGCAATTGGTGCAG+TGG | - | tig0022974:60396-60415 | Msa1403690:CDS | 40.0% | |
| GTGCAGTGGCTTCAATAATA+GGG | - | tig0022974:60410-60429 | Msa1403690:CDS | 40.0% | |
| TGCAGTGGCTTCAATAATAG+GGG | - | tig0022974:60411-60430 | Msa1403690:CDS | 40.0% | |
| GATGCTGCTATAAGAATCAC+AGG | - | tig0022974:60592-60611 | Msa1403690:CDS | 40.0% | |
| GAATCACAGGCAAAATAAGG+TGG | - | tig0022974:60605-60624 | Msa1403690:CDS | 40.0% | |
| AATAAGGTGGATGCCTATGA+TGG | - | tig0022974:60618-60637 | Msa1403690:CDS | 40.0% | |
| !! | GGTGGCCTTATATCAAAATG+GGG | - | tig0022974:60715-60734 | Msa1403690:CDS | 40.0% |
| !! | CTCCACCCCATTTTGATATA+AGG | + | tig0022974:60723-60742 | None:intergenic | 40.0% |
| CTTATATCAAAATGGGGTGG+AGG | - | tig0022974:60721-60740 | Msa1403690:CDS | 40.0% | |
| GAAGGAATCAACTCCTCATA+AGG | + | tig0022974:60871-60890 | None:intergenic | 40.0% | |
| CTCATTTCACAAACCTCAGA+AGG | + | tig0022974:60889-60908 | None:intergenic | 40.0% | |
| !! | GCCATTCTGTTGGTTCTGTT+AGG | + | tig0022974:57893-57912 | None:intergenic | 45.0% |
| ! | AACCGACGCTTTTCCAGTAA+TGG | - | tig0022974:58121-58140 | Msa1403690:CDS | 45.0% |
| ! | ACCGACGCTTTTCCAGTAAT+GGG | - | tig0022974:58122-58141 | Msa1403690:CDS | 45.0% |
| ! | TCCCATTACTGGAAAAGCGT+CGG | + | tig0022974:58126-58145 | None:intergenic | 45.0% |
| !!! | AGGCCTTATTTTGTCGTTGC+TGG | - | tig0022974:58155-58174 | Msa1403690:CDS | 45.0% |
| TTTGTCGTTGCTGGAGTTGT+TGG | - | tig0022974:58164-58183 | Msa1403690:CDS | 45.0% | |
| TCTGCTACGATTGTTGCTGT+GGG | - | tig0022974:58194-58213 | Msa1403690:CDS | 45.0% | |
| ! | TAGTATTGAGGTTCCAGGGT+TGG | - | tig0022974:58316-58335 | Msa1403690:CDS | 45.0% |
| CCACACAAACTCTGCAAATC+AGG | + | tig0022974:58344-58363 | None:intergenic | 45.0% | |
| ! | CCTGATTTGCAGAGTTTGTG+TGG | - | tig0022974:58341-58360 | Msa1403690:CDS | 45.0% |
| !!! | TGTGGGTTTTGTTCTGGTTC+TGG | - | tig0022974:58359-58378 | Msa1403690:CDS | 45.0% |
| TGTTCATCATCTTGGTCCTC+AGG | - | tig0022974:58415-58434 | Msa1403690:intron | 45.0% | |
| ! | AGGTTAGTCGTGTCACAATC+AGG | - | tig0022974:58542-58561 | Msa1403690:intron | 45.0% |
| ! | GGTTAGTCGTGTCACAATCA+GGG | - | tig0022974:58543-58562 | Msa1403690:intron | 45.0% |
| CCCAGAACAATTGTCAATGC+AGG | + | tig0022974:59101-59120 | None:intergenic | 45.0% | |
| !! | TAGGGGGTAGTGGAAAATGT+AGG | - | tig0022974:59331-59350 | Msa1403690:CDS | 45.0% |
| TTGTCTGCAGTCAGAAATCC+CGG | + | tig0022974:59662-59681 | None:intergenic | 45.0% | |
| TGCTGAATACAGGCAATTCC+AGG | - | tig0022974:60046-60065 | Msa1403690:intron | 45.0% | |
| ACTCCTGCATATTCAAAGGG+AGG | + | tig0022974:60366-60385 | None:intergenic | 45.0% | |
| GGTGCAGTGGCTTCAATAAT+AGG | - | tig0022974:60409-60428 | Msa1403690:CDS | 45.0% | |
| ! | GGCCTTATATCAAAATGGGG+TGG | - | tig0022974:60718-60737 | Msa1403690:CDS | 45.0% |
| ! | TCCTAATGTTGGGCCTTATG+AGG | - | tig0022974:60855-60874 | Msa1403690:CDS | 45.0% |
| TCCTCATAAGGCCCAACATT+AGG | + | tig0022974:60859-60878 | None:intergenic | 45.0% | |
| ! | TGAGGAGTTGATTCCTTCTG+AGG | - | tig0022974:60873-60892 | Msa1403690:CDS | 45.0% |
| TCGGTTAGAATGCCCCAGAT+AGG | + | tig0022974:58107-58126 | None:intergenic | 50.0% | |
| CTCCGACGATATCCCATTAC+TGG | + | tig0022974:58137-58156 | None:intergenic | 50.0% | |
| ! | CAGTAATGGGATATCGTCGG+AGG | - | tig0022974:58135-58154 | Msa1403690:CDS | 50.0% |
| CGTTGCTGGAGTTGTTGGAA+CGG | - | tig0022974:58169-58188 | Msa1403690:CDS | 50.0% | |
| GTCTGCTACGATTGTTGCTG+TGG | - | tig0022974:58193-58212 | Msa1403690:CDS | 50.0% | |
| !!! | GCGGCGTTGATGTGTTTTGT+TGG | - | tig0022974:58236-58255 | Msa1403690:CDS | 50.0% |
| !! | TCTGGTTCTGGTGCTCTTCT+TGG | - | tig0022974:58371-58390 | Msa1403690:CDS | 50.0% |
| !! | TTAGGGGTCGCTTGGTCTTA+TGG | - | tig0022974:59067-59086 | Msa1403690:intron | 50.0% |
| AGAGATGGCTTCCATGCTTG+AGG | + | tig0022974:59394-59413 | None:intergenic | 50.0% | |
| ! | GAGGTACCTGAGAGAATGCA+GGG | + | tig0022974:59495-59514 | None:intergenic | 50.0% |
| !! | AGAGGTACCTGAGAGAATGC+AGG | + | tig0022974:59496-59515 | None:intergenic | 50.0% |
| TGGTTACCTGCAGTGACTAC+CGG | - | tig0022974:59640-59659 | Msa1403690:CDS | 50.0% | |
| GGTATAGGCCAAGGCTTCAC+AGG | - | tig0022974:57972-57991 | Msa1403690:CDS | 55.0% | |
| AGAGTGAGCCTGTGAAGCCT+TGG | + | tig0022974:57983-58002 | None:intergenic | 55.0% | |
| GCTACGATTGTTGCTGTGGG+AGG | - | tig0022974:58197-58216 | Msa1403690:CDS | 55.0% | |
| GATTGTTGCTGTGGGAGGTG+AGG | - | tig0022974:58202-58221 | Msa1403690:CDS | 55.0% | |
| AGGTGAGGTGAGTGTGGTTG+CGG | - | tig0022974:58217-58236 | Msa1403690:CDS | 55.0% | |
| TGCAAATCAGGAGCCAACCC+TGG | + | tig0022974:58332-58351 | None:intergenic | 55.0% | |
| GGTTACCTGCAGTGACTACC+GGG | - | tig0022974:59641-59660 | Msa1403690:CDS | 55.0% | |
| GAAATCCCGGTAGTCACTGC+AGG | + | tig0022974:59649-59668 | None:intergenic | 55.0% | |
| TGTGGGAGGTGAGGTGAGTG+TGG | - | tig0022974:58211-58230 | Msa1403690:CDS | 60.0% | |
| !! | GGGGTCGCTTGGTCTTATGG+CGG | - | tig0022974:59070-59089 | Msa1403690:intron | 60.0% |
| AGTCGGCCCTGCATTCTCTC+AGG | - | tig0022974:59486-59505 | Msa1403690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022974 | gene | 57825 | 60975 | 57825 | ID=Msa1403690;Name=Msa1403690 |
| tig0022974 | mRNA | 57825 | 60975 | 57825 | ID=Msa1403690-mRNA-1;Parent=Msa1403690;Name=Msa1403690-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|4|0|493 |
| tig0022974 | exon | 60364 | 60975 | 60364 | ID=Msa1403690-mRNA-1:exon:19418;Parent=Msa1403690-mRNA-1 |
| tig0022974 | exon | 59628 | 59729 | 59628 | ID=Msa1403690-mRNA-1:exon:19417;Parent=Msa1403690-mRNA-1 |
| tig0022974 | exon | 59293 | 59466 | 59293 | ID=Msa1403690-mRNA-1:exon:19416;Parent=Msa1403690-mRNA-1 |
| tig0022974 | exon | 57825 | 58418 | 57825 | ID=Msa1403690-mRNA-1:exon:19415;Parent=Msa1403690-mRNA-1 |
| tig0022974 | CDS | 60364 | 60975 | 60364 | ID=Msa1403690-mRNA-1:cds;Parent=Msa1403690-mRNA-1 |
| tig0022974 | CDS | 59628 | 59729 | 59628 | ID=Msa1403690-mRNA-1:cds;Parent=Msa1403690-mRNA-1 |
| tig0022974 | CDS | 59293 | 59466 | 59293 | ID=Msa1403690-mRNA-1:cds;Parent=Msa1403690-mRNA-1 |
| tig0022974 | CDS | 57825 | 58418 | 57825 | ID=Msa1403690-mRNA-1:cds;Parent=Msa1403690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
