AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211610 MtrunA17_Chr4g0060271 96.110 617 19 2 1 616 1 613 0.0 1214
Msa1211610 MtrunA17_Chr7g0216891 40.493 568 255 20 68 599 38 558 6.89e-97 308
Msa1211610 MtrunA17_Chr2g0322391 34.091 484 220 17 59 527 157 556 3.40e-55 197
Msa1211610 MtrunA17_Chr3g0099641 37.791 344 160 9 64 402 87 381 7.27e-54 191
Msa1211610 MtrunA17_Chr4g0051181 36.381 536 259 21 1 526 10 473 8.45e-51 182
Msa1211610 MtrunA17_Chr2g0288871 35.625 480 195 17 70 527 143 530 6.35e-49 179
Msa1211610 MtrunA17_Chr4g0075201 37.798 336 154 8 70 405 120 400 2.09e-48 176
Msa1211610 MtrunA17_Chr7g0270831 55.090 167 57 2 233 396 190 341 2.71e-47 172
Msa1211610 MtrunA17_Chr2g0302391 49.143 175 77 3 225 399 181 343 2.14e-43 161
Msa1211610 MtrunA17_Chr4g0025061 51.948 154 61 3 244 397 345 485 8.22e-42 160
Msa1211610 MtrunA17_Chr4g0024391 28.398 493 238 16 84 527 14 440 8.71e-38 146
Msa1211610 MtrunA17_Chr4g0001361 45.528 123 50 3 242 347 143 265 4.32e-25 106
Msa1211610 MtrunA17_Chr1g0150281 50.000 94 47 0 242 335 123 216 8.27e-25 104
Msa1211610 MtrunA17_Chr1g0150271 45.918 98 51 1 240 335 80 177 1.12e-24 103
Msa1211610 MtrunA17_Chr5g0432161 45.133 113 54 3 213 321 374 482 2.32e-24 107
Msa1211610 MtrunA17_Chr3g0136961 63.333 60 22 0 258 317 137 196 2.43e-24 103
Msa1211610 MtrunA17_Chr3g0106491 52.564 78 36 1 242 319 348 424 1.48e-23 104
Msa1211610 MtrunA17_Chr3g0106491 49.206 63 30 2 259 321 198 258 3.30e-13 72.4
Msa1211610 MtrunA17_Chr5g0445311 35.196 179 98 4 157 335 279 439 2.10e-23 104
Msa1211610 MtrunA17_Chr5g0445311 50.820 61 28 2 259 319 200 258 1.20e-11 67.4
Msa1211610 MtrunA17_Chr4g0004911 50.633 79 38 1 242 320 319 396 1.06e-22 102
Msa1211610 MtrunA17_Chr4g0004911 48.333 60 30 1 260 319 185 243 7.35e-13 71.2
Msa1211610 MtrunA17_Chr3g0101131 45.794 107 53 2 213 319 373 474 1.55e-22 102
Msa1211610 MtrunA17_Chr3g0101131 49.180 61 29 2 259 319 243 301 1.99e-11 67.0
Msa1211610 MtrunA17_Chr7g0243891 52.564 78 36 1 242 319 357 433 1.72e-22 101
Msa1211610 MtrunA17_Chr7g0243891 51.613 62 28 2 260 321 217 276 4.50e-12 68.9
Msa1211610 MtrunA17_Chr2g0333851 43.478 92 41 1 239 319 138 229 3.29e-22 97.8
Msa1211610 MtrunA17_Chr5g0418191 36.842 171 101 3 182 350 245 410 4.05e-22 99.4
Msa1211610 MtrunA17_Chr5g0418191 50.746 67 30 3 253 319 146 209 1.13e-13 73.6
Msa1211610 MtrunA17_Chr7g0218081 42.478 113 60 2 226 334 373 484 5.63e-22 99.8
Msa1211610 MtrunA17_Chr7g0218081 42.222 90 49 3 230 319 200 286 4.11e-12 68.9
Msa1211610 MtrunA17_Chr3g0079691 51.948 77 36 1 243 319 479 554 1.23e-21 99.8
Msa1211610 MtrunA17_Chr3g0079691 40.000 100 55 4 220 319 244 338 7.27e-13 71.6
Msa1211610 MtrunA17_Chr7g0249311 38.793 116 70 1 242 357 375 489 2.29e-21 98.6
Msa1211610 MtrunA17_Chr7g0249311 48.485 66 32 2 257 322 177 240 2.88e-11 66.6
Msa1211610 MtrunA17_Chr4g0042831 50.000 80 39 1 244 323 263 341 2.52e-21 96.7
Msa1211610 MtrunA17_Chr4g0042831 31.515 165 100 5 259 421 145 298 2.02e-12 69.3
Msa1211610 MtrunA17_Chr7g0263531 50.649 77 37 1 247 323 349 424 2.81e-21 97.1
Msa1211610 MtrunA17_Chr7g0263531 45.679 81 41 3 254 334 185 262 1.56e-13 73.2
Msa1211610 MtrunA17_Chr1g0194481 40.000 125 69 4 226 348 128 248 4.93e-21 94.7
Msa1211610 MtrunA17_Chr7g0249301 52.703 74 34 1 246 319 279 351 5.09e-21 95.5
Msa1211610 MtrunA17_Chr7g0249301 49.206 63 30 2 257 319 60 120 2.95e-11 65.5
Msa1211610 MtrunA17_Chr7g0270191 39.167 120 60 3 226 337 104 218 1.10e-20 92.8
Msa1211610 MtrunA17_Chr5g0419241 66.071 56 19 0 232 287 50 105 2.09e-20 86.7
Msa1211610 MtrunA17_Chr4g0074001 51.250 80 38 1 241 320 341 419 4.24e-20 94.0
Msa1211610 MtrunA17_Chr4g0051881 39.423 104 62 1 246 349 165 267 6.43e-20 91.7
Msa1211610 MtrunA17_Chr8g0335811 46.988 83 43 1 235 317 130 211 8.33e-20 89.0
Msa1211610 MtrunA17_Chr5g0447701 45.882 85 45 1 244 328 237 320 1.64e-19 91.3
Msa1211610 MtrunA17_Chr2g0294231 48.052 77 39 1 243 319 187 262 3.75e-19 89.7
Msa1211610 MtrunA17_Chr3g0129361 47.368 76 39 1 242 317 127 201 4.53e-19 86.3
Msa1211610 MtrunA17_Chr4g0068541 47.436 78 40 1 243 320 192 268 7.44e-19 89.4
Msa1211610 MtrunA17_Chr1g0150801 49.315 73 36 1 244 316 87 158 9.02e-19 84.0
Msa1211610 MtrunA17_Chr5g0401821 55.224 67 28 1 254 320 196 260 1.80e-18 85.9
Msa1211610 MtrunA17_Chr5g0443131 48.649 74 37 1 246 319 144 216 2.30e-18 86.3
Msa1211610 MtrunA17_Chr4g0053281 57.627 59 25 0 260 318 267 325 2.40e-18 86.7
Msa1211610 MtrunA17_Chr8g0379461 55.385 65 29 0 259 323 76 140 2.80e-18 84.7
Msa1211610 MtrunA17_Chr7g0270051 44.792 96 50 1 259 354 53 145 3.14e-18 85.1
Msa1211610 MtrunA17_Chr1g0188941 43.590 78 43 1 242 319 34 110 3.62e-18 80.5
Msa1211610 MtrunA17_Chr5g0418781 38.462 117 64 3 221 336 92 201 4.28e-18 85.1
Msa1211610 MtrunA17_Chr7g0224801 48.571 70 35 1 249 318 83 151 6.14e-18 81.6
Msa1211610 MtrunA17_Chr2g0319961 49.367 79 40 0 250 328 71 149 1.09e-17 83.6
Msa1211610 MtrunA17_Chr8g0383351 46.753 77 39 2 242 317 142 217 1.34e-17 82.4
Msa1211610 MtrunA17_Chr8g0383251 42.857 77 43 1 246 322 95 170 1.46e-17 81.3
Msa1211610 MtrunA17_Chr2g0289181 41.818 110 53 3 247 347 4 111 3.69e-17 81.3
Msa1211610 MtrunA17_Chr3g0129321 46.753 77 40 1 246 322 105 180 4.56e-17 80.1
Msa1211610 MtrunA17_Chr1g0184691 53.448 58 27 0 260 317 294 351 8.44e-17 82.4
Msa1211610 MtrunA17_Chr7g0228941 48.571 70 33 2 248 316 42 109 8.62e-17 77.0
Msa1211610 MtrunA17_Chr1g0147881 52.542 59 28 0 260 318 263 321 1.00e-16 82.0
Msa1211610 MtrunA17_Chr2g0284321 53.333 60 28 0 260 319 36 95 1.39e-16 79.0
Msa1211610 MtrunA17_Chr8g0386241 40.244 82 48 1 244 325 88 168 2.22e-16 77.4
Msa1211610 MtrunA17_Chr3g0139021 40.870 115 48 4 220 316 259 371 2.97e-16 81.3
Msa1211610 MtrunA17_Chr7g0248721 50.000 74 35 2 243 316 125 196 3.46e-16 78.2
Msa1211610 MtrunA17_Chr2g0293481 46.667 75 40 0 260 334 268 342 5.08e-16 81.3
Msa1211610 MtrunA17_Chr6g0485431 47.368 76 38 2 246 320 141 215 1.23e-15 79.0
Msa1211610 MtrunA17_Chr7g0238921 58.621 58 23 1 259 316 124 180 4.36e-15 76.6
Msa1211610 MtrunA17_Chr8g0348311 47.887 71 37 0 259 329 155 225 7.08e-15 76.3
Msa1211610 MtrunA17_Chr4g0071521 50.000 64 30 1 254 317 242 303 7.10e-15 76.3
Msa1211610 MtrunA17_Chr7g0248691 39.560 91 52 1 242 329 134 224 1.26e-14 75.5
Msa1211610 MtrunA17_Chr8g0387501 42.466 73 42 0 257 329 127 199 5.32e-14 72.8
Msa1211610 MtrunA17_Chr5g0432071 42.308 78 43 2 259 336 104 179 5.43e-14 71.6
Msa1211610 MtrunA17_Chr1g0202461 45.714 70 38 0 260 329 262 331 1.55e-13 72.8
Msa1211610 MtrunA17_Chr8g0387981 35.811 148 68 7 179 314 57 189 2.87e-12 68.6
Msa1211610 MtrunA17_Chr1g0189391 37.234 94 55 3 227 317 63 155 4.54e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211610 AT5G15130.1 42.596 493 199 18 63 527 28 464 3.88e-88 284
Msa1211610 AT5G15130.2 42.678 478 190 18 78 527 1 422 2.18e-84 273
Msa1211610 AT1G18860.1 38.596 570 234 19 7 527 8 510 1.70e-79 261
Msa1211610 AT1G69810.1 38.485 330 169 9 68 394 23 321 5.77e-57 197
Msa1211610 AT4G04450.2 38.636 352 155 12 67 394 8 322 1.20e-53 189
Msa1211610 AT1G68150.1 81.633 98 18 0 243 340 219 316 5.46e-53 186
Msa1211610 AT4G04450.1 38.920 352 154 12 67 394 102 416 1.38e-52 189
Msa1211610 AT1G62300.1 32.486 551 265 17 5 531 76 543 5.24e-47 174
Msa1211610 AT1G69810.2 38.095 294 148 9 104 394 1 263 4.18e-45 163
Msa1211610 AT4G01720.1 77.778 81 18 0 239 319 219 299 2.28e-39 151
Msa1211610 AT4G22070.4 60.366 164 53 3 234 397 272 423 3.96e-39 151
Msa1211610 AT4G22070.3 60.366 164 53 3 234 397 272 423 3.96e-39 151
Msa1211610 AT4G22070.2 60.366 164 53 3 234 397 272 423 3.96e-39 151
Msa1211610 AT4G22070.1 60.366 164 53 3 234 397 272 423 3.96e-39 151
Msa1211610 AT4G31800.2 54.321 81 37 0 257 337 109 189 2.75e-26 108
Msa1211610 AT4G31800.1 54.321 81 37 0 257 337 174 254 4.66e-26 109
Msa1211610 AT2G25000.2 65.079 63 22 0 257 319 101 163 8.94e-25 103
Msa1211610 AT2G25000.4 65.079 63 22 0 257 319 101 163 8.94e-25 103
Msa1211610 AT2G25000.3 65.079 63 22 0 257 319 123 185 1.71e-24 103
Msa1211610 AT2G25000.1 65.079 63 22 0 257 319 144 206 1.91e-24 103
Msa1211610 AT1G80840.1 61.538 65 25 0 255 319 142 206 2.66e-24 103
Msa1211610 AT2G38470.1 47.778 90 46 1 242 331 345 433 1.64e-23 105
Msa1211610 AT2G38470.1 51.667 60 27 2 260 319 185 242 8.93e-13 71.6
Msa1211610 AT1G29860.1 36.364 154 85 4 243 396 120 260 1.94e-23 101
Msa1211610 AT5G56270.1 54.545 77 34 1 243 319 471 546 4.63e-23 104
Msa1211610 AT5G56270.1 51.667 60 27 2 260 319 274 331 9.04e-12 68.6
Msa1211610 AT4G26640.5 48.810 84 42 1 241 324 187 269 1.20e-22 100
Msa1211610 AT4G26640.5 39.773 88 49 3 251 336 25 110 1.10e-11 67.4
Msa1211610 AT4G26640.6 48.810 84 42 1 241 324 187 269 1.20e-22 100
Msa1211610 AT4G26640.6 39.773 88 49 3 251 336 25 110 1.10e-11 67.4
Msa1211610 AT4G26640.4 48.810 84 42 1 241 324 187 269 1.20e-22 100
Msa1211610 AT4G26640.4 39.773 88 49 3 251 336 25 110 1.10e-11 67.4
Msa1211610 AT4G26640.3 48.810 84 42 1 241 324 187 269 1.20e-22 100
Msa1211610 AT4G26640.3 39.773 88 49 3 251 336 25 110 1.10e-11 67.4
Msa1211610 AT4G30935.1 45.872 109 56 2 212 320 286 391 1.37e-22 101
Msa1211610 AT2G03340.1 41.667 108 62 1 217 324 373 479 3.14e-22 100
Msa1211610 AT2G03340.1 50.746 67 30 3 253 319 245 308 3.95e-14 75.9
Msa1211610 AT4G26640.1 48.810 84 42 1 241 324 291 373 3.37e-22 100
Msa1211610 AT4G26640.1 46.479 71 34 3 251 319 129 197 1.72e-11 67.4
Msa1211610 AT4G26640.7 48.810 84 42 1 241 324 323 405 3.58e-22 100
Msa1211610 AT4G26640.7 46.479 71 34 3 251 319 161 229 1.75e-11 67.4
Msa1211610 AT4G26640.2 48.810 84 42 1 241 324 363 445 5.39e-22 100
Msa1211610 AT4G26640.2 46.479 71 34 3 251 319 201 269 2.03e-11 67.4
Msa1211610 AT1G13960.1 44.792 96 46 2 230 319 374 468 1.06e-21 99.4
Msa1211610 AT1G13960.1 49.254 67 31 3 253 319 224 287 6.79e-13 72.0
Msa1211610 AT1G13960.2 52.703 74 34 1 246 319 243 315 1.57e-21 97.1
Msa1211610 AT1G13960.2 49.254 67 31 3 253 319 71 134 7.64e-13 70.9
Msa1211610 AT5G07100.2 51.282 78 37 1 242 319 124 200 1.61e-21 94.0
Msa1211610 AT5G07100.2 42.105 76 43 1 257 332 22 96 3.99e-12 66.6
Msa1211610 AT5G07100.4 51.282 78 37 1 242 319 124 200 1.61e-21 94.0
Msa1211610 AT5G07100.4 42.105 76 43 1 257 332 22 96 3.99e-12 66.6
Msa1211610 AT5G07100.5 51.282 78 37 1 242 319 124 200 1.61e-21 94.0
Msa1211610 AT5G07100.5 42.105 76 43 1 257 332 22 96 3.99e-12 66.6
Msa1211610 AT5G07100.3 51.282 78 37 1 242 319 124 200 1.61e-21 94.0
Msa1211610 AT5G07100.3 42.105 76 43 1 257 332 22 96 3.99e-12 66.6
Msa1211610 AT5G07100.1 51.282 78 37 1 242 319 217 293 2.24e-21 95.9
Msa1211610 AT5G07100.1 42.105 76 43 1 257 332 115 189 8.91e-12 67.0
Msa1211610 AT2G04880.2 52.000 75 35 1 245 319 269 342 3.19e-21 97.4
Msa1211610 AT2G04880.2 41.237 97 52 4 257 353 109 200 9.62e-13 71.2
Msa1211610 AT4G26440.1 36.517 178 94 7 210 386 326 485 3.21e-21 98.2
Msa1211610 AT4G26440.1 49.254 67 31 3 253 319 173 236 1.59e-11 67.8
Msa1211610 AT5G26170.1 50.685 73 35 1 245 317 99 170 3.28e-21 91.7
Msa1211610 AT2G04880.1 52.000 75 35 1 245 319 293 366 4.91e-21 97.1
Msa1211610 AT2G04880.1 45.588 68 35 2 257 324 109 174 1.63e-12 70.5
Msa1211610 AT5G41570.1 43.299 97 54 1 220 316 59 154 5.61e-21 91.3
Msa1211610 AT2G30250.1 43.878 98 51 2 225 319 291 387 7.06e-21 95.5
Msa1211610 AT2G44745.1 44.186 86 47 1 231 316 117 201 1.85e-20 90.9
Msa1211610 AT3G01080.1 51.351 74 35 1 246 319 293 365 2.39e-20 94.4
Msa1211610 AT3G01080.2 51.351 74 35 1 246 319 331 403 2.44e-20 94.7
Msa1211610 AT2G47260.1 43.137 102 52 2 239 335 154 254 2.98e-20 92.8
Msa1211610 AT5G49520.1 46.835 79 41 1 243 321 205 282 4.09e-20 93.6
Msa1211610 AT5G46350.1 46.591 88 45 2 246 332 170 256 9.51e-20 91.3
Msa1211610 AT4G18170.1 43.878 98 48 3 222 319 141 231 1.25e-19 90.9
Msa1211610 AT1G64000.1 52.113 71 33 1 246 316 101 170 3.61e-19 86.3
Msa1211610 AT5G28650.1 62.712 59 22 0 264 322 267 325 5.02e-19 89.0
Msa1211610 AT5G13080.1 47.945 73 37 1 246 318 54 125 9.58e-19 83.6
Msa1211610 AT1G69310.4 42.574 101 51 2 216 316 110 203 1.30e-18 87.0
Msa1211610 AT1G69310.2 42.574 101 51 2 216 316 110 203 1.30e-18 87.0
Msa1211610 AT1G69310.1 42.574 101 51 2 216 316 110 203 1.30e-18 87.0
Msa1211610 AT5G64810.1 45.000 80 43 1 237 316 88 166 1.30e-18 84.7
Msa1211610 AT4G24240.1 52.778 72 32 1 254 325 278 347 1.48e-18 88.2
Msa1211610 AT1G55600.1 44.872 78 42 1 242 319 290 366 1.54e-18 89.4
Msa1211610 AT3G04670.1 59.322 59 24 0 264 322 267 325 1.80e-18 87.4
Msa1211610 AT2G23320.1 59.322 59 24 0 260 318 241 299 2.80e-18 86.7
Msa1211610 AT1G29280.1 47.297 74 39 0 250 323 65 138 5.42e-18 84.7
Msa1211610 AT2G46130.1 51.351 74 35 1 243 316 14 86 6.42e-18 80.1
Msa1211610 AT3G62340.1 48.193 83 42 1 238 320 97 178 8.87e-18 84.3
Msa1211610 AT4G39410.1 44.737 76 41 1 242 317 206 280 1.11e-17 84.7
Msa1211610 AT2G30590.1 46.988 83 36 1 242 316 288 370 2.33e-17 84.7
Msa1211610 AT2G37260.2 56.923 65 27 1 257 321 265 328 3.21e-17 84.0
Msa1211610 AT2G37260.2 43.434 99 53 3 260 358 84 179 2.63e-16 81.3
Msa1211610 AT2G37260.3 56.923 65 27 1 257 321 267 330 3.40e-17 84.0
Msa1211610 AT2G37260.3 43.434 99 53 3 260 358 86 181 2.81e-16 81.3
Msa1211610 AT2G37260.1 56.923 65 27 1 257 321 347 410 6.99e-17 84.0
Msa1211610 AT2G37260.1 43.434 99 53 3 260 358 166 261 6.35e-16 80.9
Msa1211610 AT3G01970.1 47.297 74 38 1 245 318 51 123 9.70e-17 78.2
Msa1211610 AT4G31550.1 35.088 171 81 7 169 316 140 303 1.83e-16 81.3
Msa1211610 AT4G31550.2 46.154 78 35 2 239 316 232 302 2.97e-16 80.9
Msa1211610 AT2G24570.1 39.806 103 51 3 239 341 230 321 4.08e-16 80.1
Msa1211610 AT4G23550.1 44.156 77 43 0 258 334 139 215 2.80e-15 77.4
Msa1211610 AT1G30650.1 49.254 67 34 0 260 326 218 284 3.13e-15 79.0
Msa1211610 AT3G58710.1 52.308 65 31 0 259 323 71 135 4.09e-15 76.6
Msa1211610 AT3G58710.2 52.308 65 31 0 259 323 70 134 4.11e-15 76.3
Msa1211610 AT4G01250.1 46.479 71 38 0 259 329 128 198 4.80e-15 76.6
Msa1211610 AT2G34830.1 49.254 67 34 0 260 326 216 282 9.08e-15 77.4
Msa1211610 AT2G34830.2 49.254 67 34 0 260 326 225 291 1.04e-14 77.0
Msa1211610 AT4G31800.3 67.500 40 13 0 257 296 174 213 1.41e-14 74.3
Msa1211610 AT5G52830.1 48.571 70 36 0 260 329 166 235 2.79e-14 75.1
Msa1211610 AT2G21900.1 45.161 62 33 1 258 319 108 168 8.02e-14 71.2
Msa1211610 AT1G69310.3 39.604 101 50 3 216 316 110 199 9.90e-14 72.4
Msa1211610 AT2G46130.2 47.297 74 34 2 243 316 14 82 5.17e-13 65.9
Msa1211610 AT5G43290.1 51.724 58 27 1 259 316 114 170 5.59e-13 70.1
Msa1211610 AT5G24110.1 46.575 73 36 2 244 314 99 170 1.94e-12 68.9
Msa1211610 AT5G45050.1 35.780 109 68 1 211 319 1134 1240 7.73e-12 69.3
Msa1211610 AT5G45050.4 35.780 109 68 1 211 319 995 1101 8.32e-12 68.9
Msa1211610 AT5G45050.2 35.780 109 68 1 211 319 1106 1212 8.67e-12 68.9

Find 116 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTGGACTTGGAATATT+TGG 0.129902 8_1:-71324251 None:intergenic
CCATATATGGAGTGCAATTC+TGG 0.170613 8_1:+71321658 Msa1211610:exon
GCAGCACTTTCTTCACTTAT+TGG 0.177197 8_1:+71325779 Msa1211610:CDS
CAATGCATGGGATTTGATTC+AGG 0.243163 8_1:-71325515 None:intergenic
ATAAATAATCACCAATTAAT+TGG 0.256352 8_1:-71326065 None:intergenic
TCATCAAGTTCTAAAGTAAA+TGG 0.266329 8_1:+71325902 Msa1211610:CDS
CCAGAATTGCACTCCATATA+TGG 0.273439 8_1:-71321658 None:intergenic
GGAAATGCAATTTAACAATA+TGG 0.281542 8_1:+71323971 Msa1211610:CDS
ATTCTGCATTTATTTCTTCA+TGG 0.288137 8_1:-71324040 None:intergenic
TTGTTCCTATTATTACTATA+TGG 0.291383 8_1:-71325575 None:intergenic
GAAATGGGCTGAGATGTTTC+AGG 0.315609 8_1:+71325859 Msa1211610:CDS
CAAACTCTAGCTTTCTTTGC+AGG 0.346131 8_1:-71324386 None:intergenic
ACAACTTCATCATCCTTTGT+TGG 0.350623 8_1:-71324290 None:intergenic
ATCAACCATATAGTAATAAT+AGG 0.373148 8_1:+71325570 Msa1211610:CDS
GAATTCTTCATCATTATTCA+AGG 0.382747 8_1:-71324153 None:intergenic
TGAGACAACAAAAGCTCAAA+TGG 0.387526 8_1:+71323878 Msa1211610:CDS
GCTAAAGCTGATTGAAAAGT+TGG 0.388661 8_1:-71325755 None:intergenic
CAAACCAACAACAATCTTCA+TGG 0.391184 8_1:+71325275 Msa1211610:CDS
CTTATTGGAAACACTAATCA+AGG 0.409882 8_1:+71325794 Msa1211610:CDS
TAATGATGAAGAATTCAATA+AGG 0.410747 8_1:+71324160 Msa1211610:CDS
CCATTCTGTGTATTGTTCAC+TGG 0.411705 8_1:-71325956 None:intergenic
GGATGTCAATGGAGGAAGTA+TGG 0.418183 8_1:+71324719 Msa1211610:CDS
GGAAGAGTTGTCACTTGGAT+TGG 0.418802 8_1:+71324181 Msa1211610:CDS
CATCTGGTAGATAAAAGTTT+AGG 0.422150 8_1:-71325298 None:intergenic
AACCTAAGCACTTTAAACTT+TGG 0.427632 8_1:+71325602 Msa1211610:CDS
GATGATGTTGAAGAATTTGA+TGG 0.429432 8_1:-71325410 None:intergenic
TTGTTGTTGGTTTGTGTTGA+GGG 0.435206 8_1:-71325266 None:intergenic
AAGAAGGGTATCTTGGTAGT+TGG 0.437752 8_1:-71325472 None:intergenic
ATTTGAGTCAGAAAATGAAA+TGG 0.439076 8_1:+71325843 Msa1211610:CDS
GTCTTATTGAGTGTCTTGCT+TGG 0.445610 8_1:-71324326 None:intergenic
TTTGAGTAGTAGCATAATTG+AGG 0.451637 8_1:-71325547 None:intergenic
CATATATGGAGTGCAATTCT+GGG 0.463692 8_1:+71321659 Msa1211610:exon
AAGAGAAGTGAGCGTAGTAC+TGG 0.464658 8_1:+71321718 Msa1211610:CDS
TTGGGCGAGGATATTGTGCT+TGG 0.464830 8_1:-71323605 None:intergenic
ATCATGTCCAGTTAGAAAAC+AGG 0.466304 8_1:+71324802 Msa1211610:CDS
GCCGCATCGATGCTATTATC+AGG 0.467031 8_1:+71325215 Msa1211610:CDS
CGATAGTAAGCTCGAGGGCA+AGG 0.467132 8_1:-71324764 None:intergenic
ATGATAGTGCAGGGTTGGAT+AGG 0.467366 8_1:-71325343 None:intergenic
AGAGTGGAAGAAGGGTATCT+TGG 0.467928 8_1:-71325479 None:intergenic
GATCTTTCAGTATTAGCAAT+GGG 0.469342 8_1:-71323569 None:intergenic
TTTGAGTCAGAAAATGAAAT+GGG 0.477793 8_1:+71325844 Msa1211610:CDS
GATCTTGTTTCCCTCAGCCT+TGG 0.480636 8_1:+71324065 Msa1211610:CDS
TTATTGAGTGTCTTGCTTGG+TGG 0.496292 8_1:-71324323 None:intergenic
TTCTCAAAACAGATGAATGA+TGG 0.497069 8_1:+71324698 Msa1211610:intron
AAATTTGAAACATCAAAATC+AGG 0.497604 8_1:+71324209 Msa1211610:CDS
TACCAAAGTTTAAAGTGCTT+AGG 0.497709 8_1:-71325604 None:intergenic
TAAATTGCATTTCCAGTGCT+CGG 0.498132 8_1:-71323962 None:intergenic
TCAGAACTATTCACTGGACT+TGG 0.498507 8_1:-71324260 None:intergenic
CTAAAGCTAAGAGTGGAAGA+AGG 0.503500 8_1:-71325488 None:intergenic
GTGAGATCAAGAGTGATAGT+TGG 0.505210 8_1:-71325380 None:intergenic
CGATGCGGCCGCAGAAGTTG+TGG 0.505511 8_1:-71325201 None:intergenic
TTCAAGTTTCTTGAACAAAA+CGG 0.507107 8_1:+71325931 Msa1211610:CDS
AGTTCTAAAGTAAATGGTTG+TGG 0.510261 8_1:+71325908 Msa1211610:CDS
TTTACTTTAGAACTTGATGA+AGG 0.512151 8_1:-71325899 None:intergenic
TAGGCCATGAAGATTGTTGT+TGG 0.513416 8_1:-71325279 None:intergenic
GAGTGCAATTCTGGGAGATC+TGG 0.518269 8_1:+71321667 Msa1211610:CDS
TTGAGATGATAGTGCAGGGT+TGG 0.519761 8_1:-71325348 None:intergenic
AATAAGGAAGAGTTGTCACT+TGG 0.522430 8_1:+71324176 Msa1211610:CDS
CTGAATCAAATCCCATGCAT+TGG 0.522577 8_1:+71325516 Msa1211610:CDS
GCCATGGCTGTTGCTGAAAG+TGG 0.522889 8_1:-71325176 None:intergenic
GGTTCATCAACTTCCAACTC+TGG 0.523321 8_1:+71325236 Msa1211610:CDS
TGAGGGGATTGAACCAGAGT+TGG 0.523996 8_1:-71325249 None:intergenic
AAAAGTGCTTCTGCATCTCC+TGG 0.524615 8_1:+71326022 Msa1211610:CDS
CGCAGAAGTTGTGGAAGCCA+TGG 0.524957 8_1:-71325192 None:intergenic
GGTGCAGAAAATGGCAAAGA+AGG 0.529278 8_1:-71325998 None:intergenic
CTTGAATTGAATCTAACAAA+GGG 0.532209 8_1:-71325434 None:intergenic
TAGGAACTCTTCCAAGGCTG+AGG 0.532985 8_1:-71324076 None:intergenic
ACAACTTCAGAACTATTCAC+TGG 0.533241 8_1:-71324266 None:intergenic
TCCACTTTCAGCAACAGCCA+TGG 0.540367 8_1:+71325175 Msa1211610:CDS
TCAAACATTTCACAACATGT+AGG 0.542220 8_1:+71325683 Msa1211610:CDS
TTCTGAAGTTGTTCCAACAA+AGG 0.546847 8_1:+71324277 Msa1211610:CDS
GGGAATCAAAATCAAAGTGC+AGG 0.547602 8_1:+71325815 Msa1211610:CDS
AACAAAGGATGATGAAGTTG+TGG 0.549021 8_1:+71324292 Msa1211610:CDS
ATGATGAAGTTGTGGAGACT+TGG 0.550945 8_1:+71324300 Msa1211610:CDS
GAGACAACAAAAGCTCAAAT+GGG 0.551564 8_1:+71323879 Msa1211610:CDS
AATGACTGAATACCGAGCAC+TGG 0.553755 8_1:+71323950 Msa1211610:CDS
CCAGTGAACAATACACAGAA+TGG 0.554001 8_1:+71325956 Msa1211610:CDS
ACTGAAAGATCAATTGAGGC+TGG 0.554571 8_1:+71323581 Msa1211610:CDS
ATTGTTGTTGGTTTGTGTTG+AGG 0.555298 8_1:-71325267 None:intergenic
AAATCAGGTAGCACAACTGA+AGG 0.555466 8_1:+71324224 Msa1211610:CDS
TGATCTTTCAGTATTAGCAA+TGG 0.556800 8_1:-71323570 None:intergenic
TGTTGTTGGTTTGTGTTGAG+GGG 0.559624 8_1:-71325265 None:intergenic
GAGGAAGCTATTCCAATGCA+TGG 0.564369 8_1:-71325528 None:intergenic
AGATGAATGATGGATGTCAA+TGG 0.566197 8_1:+71324708 Msa1211610:intron
AGGAAGCTATTCCAATGCAT+GGG 0.575316 8_1:-71325527 None:intergenic
TGGCTGTTGCTGAAAGTGGA+AGG 0.576476 8_1:-71325172 None:intergenic
AGGAGAACTAAAGCTAAGAG+TGG 0.580510 8_1:-71325495 None:intergenic
TGATGGAGATAGTGAACTCA+AGG 0.581059 8_1:+71321690 Msa1211610:CDS
TAAAGCTAAGAGTGGAAGAA+GGG 0.581456 8_1:-71325487 None:intergenic
ATGATGTTGAAGAATTTGAT+GGG 0.583175 8_1:-71325409 None:intergenic
TTGCTGAAAGTGGAAGGCTG+TGG 0.584244 8_1:-71325166 None:intergenic
TGTTACTAGGAACTCTTCCA+AGG 0.584869 8_1:-71324082 None:intergenic
GATAGTAAGCTCGAGGGCAA+GGG 0.589028 8_1:-71324763 None:intergenic
TAATACTGAAAGATCAATTG+AGG 0.589489 8_1:+71323577 Msa1211610:CDS
AACAAAAGCTCAAATGGGTG+AGG 0.591231 8_1:+71323884 Msa1211610:CDS
GAATGTTGAGATGATAGTGC+AGG 0.594784 8_1:-71325353 None:intergenic
GCTTGAATTGAATCTAACAA+AGG 0.596663 8_1:-71325435 None:intergenic
AGGAACTCTTCCAAGGCTGA+GGG 0.600114 8_1:-71324075 None:intergenic
TCAGGTACAAAGATGTGTTG+AGG 0.608124 8_1:+71325103 Msa1211610:intron
CATGGCTTCCACAACTTCTG+CGG 0.616867 8_1:+71325193 Msa1211610:CDS
TAGAGAAGTATTTACCGTTG+GGG 0.623579 8_1:-71324429 None:intergenic
TTCTAATCACAACATACGAA+GGG 0.629312 8_1:+71325135 Msa1211610:CDS
CTTTGGTAGACAAAATACAA+TGG 0.632926 8_1:+71325619 Msa1211610:CDS
GTGCAACGATAGTAAGCTCG+AGG 0.633302 8_1:-71324770 None:intergenic
TTATTGGAAACACTAATCAA+GGG 0.641347 8_1:+71325795 Msa1211610:CDS
ATTCTAATCACAACATACGA+AGG 0.641504 8_1:+71325134 Msa1211610:CDS
AATCAGGTAGCACAACTGAA+GGG 0.644837 8_1:+71324225 Msa1211610:CDS
AGCAAGATGTGACACCCCAA+CGG 0.667652 8_1:+71324415 Msa1211610:CDS
AGGTGAGAGAAGAAAATCAA+CGG 0.684567 8_1:+71323904 Msa1211610:CDS
TTGTCACTATTATCACCACC+AGG 0.684962 8_1:-71326040 None:intergenic
TGCAACGATAGTAAGCTCGA+GGG 0.697067 8_1:-71324769 None:intergenic
AGTGCTTCTGCATCTCCTGG+TGG 0.699273 8_1:+71326025 Msa1211610:CDS
ACCTGATAATAGCATCGATG+CGG 0.704481 8_1:-71325216 None:intergenic
TGAATGATGGATGTCAATGG+AGG 0.716593 8_1:+71324711 Msa1211610:CDS
AATGTTGAGATGATAGTGCA+GGG 0.717220 8_1:-71325352 None:intergenic
AATTCTGGGAGATCTGGTGA+TGG 0.720675 8_1:+71321673 Msa1211610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATTATATATAAAT+AGG + chr8_1:71322807-71322826 Msa1211610:intron 0.0%
!! AAATATATTATATATAAATA+GGG + chr8_1:71322808-71322827 Msa1211610:intron 0.0%
!! ATTGATATAATTAAACAAAA+AGG - chr8_1:71321995-71322014 None:intergenic 10.0%
!! TTGTTTAATTATATCAATAT+TGG + chr8_1:71321997-71322016 Msa1211610:intron 10.0%
!!! GAATTATGATTTTTTTTTTA+AGG - chr8_1:71322173-71322192 None:intergenic 10.0%
!!! ATAAGTAGATTATTTTTTAT+TGG - chr8_1:71322752-71322771 None:intergenic 10.0%
!! AATCTACTTATATATAAAAA+AGG + chr8_1:71322761-71322780 Msa1211610:intron 10.0%
!! ACATTAAAAAAAATAAACTT+GGG - chr8_1:71323410-71323429 None:intergenic 10.0%
!! TACATTAAAAAAAATAAACT+TGG - chr8_1:71323411-71323430 None:intergenic 10.0%
!!! AGTTTATTTTTTTTAATGTA+AGG + chr8_1:71323411-71323430 Msa1211610:intron 10.0%
!! TTCTAAATTATTCATTTATT+AGG + chr8_1:71324935-71324954 Msa1211610:intron 10.0%
!! CAAAATCATTTATAAAAGTT+TGG - chr8_1:71321951-71321970 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTGTTGAA+AGG - chr8_1:71322149-71322168 None:intergenic 15.0%
!!! ATTTGTGGTATATATTTTTA+TGG - chr8_1:71322563-71322582 None:intergenic 15.0%
!!! GATGATTTTTTTTTTTTGAA+TGG + chr8_1:71322783-71322802 Msa1211610:intron 15.0%
!! ATTAAATTGAAAATAAACGT+CGG + chr8_1:71322977-71322996 Msa1211610:intron 15.0%
!! ATTAAAAAAAATAAACTTGG+GGG - chr8_1:71323408-71323427 None:intergenic 15.0%
!! CATTAAAAAAAATAAACTTG+GGG - chr8_1:71323409-71323428 None:intergenic 15.0%
!!! ATTTTTCACTTTATTTATCA+TGG - chr8_1:71323466-71323485 None:intergenic 15.0%
!! GATAAATAAAGTGAAAAATA+AGG + chr8_1:71323467-71323486 Msa1211610:intron 15.0%
!!! AAATTAACCTTATCATTTTT+GGG - chr8_1:71323626-71323645 None:intergenic 15.0%
!!! AAAATTAACCTTATCATTTT+TGG - chr8_1:71323627-71323646 None:intergenic 15.0%
!!! TGAGTTTAATTTTATATAGA+CGG + chr8_1:71323746-71323765 Msa1211610:intron 15.0%
!!! TTTTTCTCAATTTCCATATA+TGG + chr8_1:71321645-71321664 Msa1211610:exon 20.0%
!! TGTGATTTAAAAGCTAAAAA+TGG - chr8_1:71321830-71321849 None:intergenic 20.0%
!! TTTCTTTCTCTCTATATATA+TGG + chr8_1:71321863-71321882 Msa1211610:intron 20.0%
!!! AGATTTGATAGTCAAAATTA+AGG + chr8_1:71321917-71321936 Msa1211610:intron 20.0%
!!! GATTTGATAGTCAAAATTAA+GGG + chr8_1:71321918-71321937 Msa1211610:intron 20.0%
!! AATTATCATTGTAATTAACG+TGG + chr8_1:71322221-71322240 Msa1211610:intron 20.0%
!! ATTATCATTGTAATTAACGT+GGG + chr8_1:71322222-71322241 Msa1211610:intron 20.0%
!!! TTTTGGATAATAAAGGATAA+GGG - chr8_1:71322272-71322291 None:intergenic 20.0%
!!! ATTTTGGATAATAAAGGATA+AGG - chr8_1:71322273-71322292 None:intergenic 20.0%
!!! AAGTTGATTTTGGATAATAA+AGG - chr8_1:71322279-71322298 None:intergenic 20.0%
!!! AGACATTTTTAACAAGTTTA+AGG - chr8_1:71322668-71322687 None:intergenic 20.0%
!!! GGTGTATTTTTATTTTCTTT+TGG - chr8_1:71322855-71322874 None:intergenic 20.0%
!! TCATCAAATGTGTATATTAA+TGG - chr8_1:71323154-71323173 None:intergenic 20.0%
!! TTAATTGACCAAATATGAAT+AGG + chr8_1:71323258-71323277 Msa1211610:intron 20.0%
!! TAATTGACCAAATATGAATA+GGG + chr8_1:71323259-71323278 Msa1211610:intron 20.0%
!! TTTCTAAATGACATAAGAAA+GGG - chr8_1:71323383-71323402 None:intergenic 20.0%
!! ATTTCTAAATGACATAAGAA+AGG - chr8_1:71323384-71323403 None:intergenic 20.0%
!!! TTTTTTTAATGTAAGGAACA+AGG + chr8_1:71323418-71323437 Msa1211610:intron 20.0%
!!! GAGTTTAATTTTATATAGAC+GGG + chr8_1:71323747-71323766 Msa1211610:intron 20.0%
!!! TTTTTTGGAATATTGTTACT+AGG - chr8_1:71324098-71324117 None:intergenic 20.0%
!! TAATGATGAAGAATTCAATA+AGG + chr8_1:71324160-71324179 Msa1211610:CDS 20.0%
!!! AAATTTGAAACATCAAAATC+AGG + chr8_1:71324209-71324228 Msa1211610:CDS 20.0%
!!! AAGTTTTTCTCTTAATCTAT+CGG + chr8_1:71324578-71324597 Msa1211610:intron 20.0%
!! ATCAACCATATAGTAATAAT+AGG + chr8_1:71325570-71325589 Msa1211610:CDS 20.0%
!! TTGTTCCTATTATTACTATA+TGG - chr8_1:71325578-71325597 None:intergenic 20.0%
! TGAAAGTCATCATCAAAAAA+AGG + chr8_1:71321750-71321769 Msa1211610:CDS 25.0%
!! ATGGATCTATATGTTTGTTT+TGG + chr8_1:71321882-71321901 Msa1211610:intron 25.0%
! TATCTACAAGTCTTAAACAA+AGG + chr8_1:71322027-71322046 Msa1211610:intron 25.0%
! AAAGGTGATTAATTTCTACA+AGG - chr8_1:71322131-71322150 None:intergenic 25.0%
!! TTGACTTCGATTCTTAATTT+TGG + chr8_1:71322473-71322492 Msa1211610:intron 25.0%
! CAATAAATACTGAAGATTTG+TGG - chr8_1:71322578-71322597 None:intergenic 25.0%
!!! ATTTTTTTAGGGGTTTGTTT+GGG - chr8_1:71322638-71322657 None:intergenic 25.0%
!!! AATTTTTTTAGGGGTTTGTT+TGG - chr8_1:71322639-71322658 None:intergenic 25.0%
!!! AAGGAGGTTGAATTTTTTTA+GGG - chr8_1:71322649-71322668 None:intergenic 25.0%
!!! TAAGGAGGTTGAATTTTTTT+AGG - chr8_1:71322650-71322669 None:intergenic 25.0%
!! CATTTTTAACAAGTTTAAGG+AGG - chr8_1:71322665-71322684 None:intergenic 25.0%
!!! TTTCTTTTGGTGTAAAACTT+GGG - chr8_1:71322842-71322861 None:intergenic 25.0%
!!! TTTTCTTTTGGTGTAAAACT+TGG - chr8_1:71322843-71322862 None:intergenic 25.0%
!!! ATGTTTGTTGATTTTTCCTT+GGG - chr8_1:71322884-71322903 None:intergenic 25.0%
! AAATTAAGAACATGCACAAT+TGG - chr8_1:71323068-71323087 None:intergenic 25.0%
!!! TGAAGATGTTATCATTTTTC+TGG + chr8_1:71323100-71323119 Msa1211610:intron 25.0%
! TGGCATATACATACTATTAA+GGG + chr8_1:71323120-71323139 Msa1211610:intron 25.0%
!!! GATATAATTTGTTTTGTGTG+TGG - chr8_1:71323196-71323215 None:intergenic 25.0%
! AATTTAAACTTACATGTGCT+GGG - chr8_1:71323235-71323254 None:intergenic 25.0%
! TAATTTAAACTTACATGTGC+TGG - chr8_1:71323236-71323255 None:intergenic 25.0%
!!! CTTTTTTCCCTATTCATATT+TGG - chr8_1:71323269-71323288 None:intergenic 25.0%
! AATAGGGAAAAAAGATTCAT+TGG + chr8_1:71323275-71323294 Msa1211610:intron 25.0%
! TTATGAACATGTCTTTAATG+AGG - chr8_1:71323325-71323344 None:intergenic 25.0%
!! TATATTTGCCTATGTTTTAC+AGG + chr8_1:71323541-71323560 Msa1211610:intron 25.0%
! TAATACTGAAAGATCAATTG+AGG + chr8_1:71323577-71323596 Msa1211610:CDS 25.0%
! ACATGAGTACTAATTGAAAT+TGG - chr8_1:71323818-71323837 None:intergenic 25.0%
! TGTTGCAATTACATGTATAT+AGG + chr8_1:71323842-71323861 Msa1211610:intron 25.0%
! GGAAATGCAATTTAACAATA+TGG + chr8_1:71323971-71323990 Msa1211610:CDS 25.0%
!! ATTCTGCATTTATTTCTTCA+TGG - chr8_1:71324043-71324062 None:intergenic 25.0%
!!! ACTTTGTCTTGATCATTTTT+TGG - chr8_1:71324113-71324132 None:intergenic 25.0%
! GAATTCTTCATCATTATTCA+AGG - chr8_1:71324156-71324175 None:intergenic 25.0%
! ATCGAATTTGGTATAAAATG+AGG - chr8_1:71324463-71324482 None:intergenic 25.0%
!!! GCTTCTCTATTTTAATCTAA+CGG - chr8_1:71324512-71324531 None:intergenic 25.0%
! AGAAATCAAATGTGAACAAA+TGG - chr8_1:71324682-71324701 None:intergenic 25.0%
! TATGGACAAAAAATTGCAAA+GGG + chr8_1:71324737-71324756 Msa1211610:CDS 25.0%
! ACCACATAATTATGAATTTC+AGG + chr8_1:71325085-71325104 Msa1211610:intron 25.0%
! ACCTGAAATTCATAATTATG+TGG - chr8_1:71325089-71325108 None:intergenic 25.0%
! ATGATGTTGAAGAATTTGAT+GGG - chr8_1:71325412-71325431 None:intergenic 25.0%
! CTTGAATTGAATCTAACAAA+GGG - chr8_1:71325437-71325456 None:intergenic 25.0%
!!! ATTGTTGTTTTTTTGCATGT+AGG - chr8_1:71325660-71325679 None:intergenic 25.0%
! TTATTGGAAACACTAATCAA+GGG + chr8_1:71325795-71325814 Msa1211610:CDS 25.0%
! ATTTGAGTCAGAAAATGAAA+TGG + chr8_1:71325843-71325862 Msa1211610:CDS 25.0%
! TTTGAGTCAGAAAATGAAAT+GGG + chr8_1:71325844-71325863 Msa1211610:CDS 25.0%
!!! TTTACTTTAGAACTTGATGA+AGG - chr8_1:71325902-71325921 None:intergenic 25.0%
!!! TCATCAAGTTCTAAAGTAAA+TGG + chr8_1:71325902-71325921 Msa1211610:CDS 25.0%
!! TTCAAGTTTCTTGAACAAAA+CGG + chr8_1:71325931-71325950 Msa1211610:CDS 25.0%
AAAAAAGGAGACTATTGTTG+AGG + chr8_1:71321765-71321784 Msa1211610:CDS 30.0%
!!! ACTTAGTAGCAAGTTGATTT+TGG - chr8_1:71322289-71322308 None:intergenic 30.0%
CACAAGAAATCCATATAGTT+AGG + chr8_1:71322388-71322407 Msa1211610:intron 30.0%
ATCTCTATGTCCTAACTATA+TGG - chr8_1:71322401-71322420 None:intergenic 30.0%
!!! AGGAGGTTGAATTTTTTTAG+GGG - chr8_1:71322648-71322667 None:intergenic 30.0%
!!! GATGTTTGTTGATTTTTCCT+TGG - chr8_1:71322885-71322904 None:intergenic 30.0%
CTGGCATATACATACTATTA+AGG + chr8_1:71323119-71323138 Msa1211610:intron 30.0%
TATCATGGATGCAAAACAAT+TGG - chr8_1:71323451-71323470 None:intergenic 30.0%
GATCTTTCAGTATTAGCAAT+GGG - chr8_1:71323572-71323591 None:intergenic 30.0%
TGATCTTTCAGTATTAGCAA+TGG - chr8_1:71323573-71323592 None:intergenic 30.0%
CAAGTAGAATCACTAAAAGT+CGG - chr8_1:71323706-71323725 None:intergenic 30.0%
!! ATAGAGAAGTATTTACCGTT+GGG - chr8_1:71324433-71324452 None:intergenic 30.0%
ATACCAAATTCGATGTTACA+TGG + chr8_1:71324469-71324488 Msa1211610:intron 30.0%
TTCTCAAAACAGATGAATGA+TGG + chr8_1:71324698-71324717 Msa1211610:intron 30.0%
GTATGGACAAAAAATTGCAA+AGG + chr8_1:71324736-71324755 Msa1211610:CDS 30.0%
! ATATGTACCTGTTTTCTAAC+TGG - chr8_1:71324812-71324831 None:intergenic 30.0%
! ATATCTCGTGTACATTTTCT+AGG - chr8_1:71324962-71324981 None:intergenic 30.0%
ATTCTAATCACAACATACGA+AGG + chr8_1:71325134-71325153 Msa1211610:CDS 30.0%
TTCTAATCACAACATACGAA+GGG + chr8_1:71325135-71325154 Msa1211610:CDS 30.0%
CATCTGGTAGATAAAAGTTT+AGG - chr8_1:71325301-71325320 None:intergenic 30.0%
! CTAAACTTTTATCTACCAGA+TGG + chr8_1:71325299-71325318 Msa1211610:CDS 30.0%
!! TGATTTGATTTTGAACCATC+TGG - chr8_1:71325317-71325336 None:intergenic 30.0%
GATGATGTTGAAGAATTTGA+TGG - chr8_1:71325413-71325432 None:intergenic 30.0%
GCTTGAATTGAATCTAACAA+AGG - chr8_1:71325438-71325457 None:intergenic 30.0%
TTTGAGTAGTAGCATAATTG+AGG - chr8_1:71325550-71325569 None:intergenic 30.0%
AACCTAAGCACTTTAAACTT+TGG + chr8_1:71325602-71325621 Msa1211610:CDS 30.0%
! TACCAAAGTTTAAAGTGCTT+AGG - chr8_1:71325607-71325626 None:intergenic 30.0%
CTTTGGTAGACAAAATACAA+TGG + chr8_1:71325619-71325638 Msa1211610:CDS 30.0%
!!! TGTTTTTTTGCATGTAGGTT+TGG - chr8_1:71325655-71325674 None:intergenic 30.0%
TCAAACATTTCACAACATGT+AGG + chr8_1:71325683-71325702 Msa1211610:CDS 30.0%
CTTATTGGAAACACTAATCA+AGG + chr8_1:71325794-71325813 Msa1211610:CDS 30.0%
!! AGTTCTAAAGTAAATGGTTG+TGG + chr8_1:71325908-71325927 Msa1211610:CDS 30.0%
CATATATGGAGTGCAATTCT+GGG + chr8_1:71321659-71321678 Msa1211610:exon 35.0%
GGATAATAAAGGATAAGGGA+AGG - chr8_1:71322268-71322287 None:intergenic 35.0%
GACATAAGAAAGGGAAAATG+AGG - chr8_1:71323374-71323393 None:intergenic 35.0%
TGAGACAACAAAAGCTCAAA+TGG + chr8_1:71323878-71323897 Msa1211610:CDS 35.0%
GAGACAACAAAAGCTCAAAT+GGG + chr8_1:71323879-71323898 Msa1211610:CDS 35.0%
AGGTGAGAGAAGAAAATCAA+CGG + chr8_1:71323904-71323923 Msa1211610:CDS 35.0%
TAAATTGCATTTCCAGTGCT+CGG - chr8_1:71323965-71323984 None:intergenic 35.0%
AATAAGGAAGAGTTGTCACT+TGG + chr8_1:71324176-71324195 Msa1211610:CDS 35.0%
TTCACTGGACTTGGAATATT+TGG - chr8_1:71324254-71324273 None:intergenic 35.0%
ACAACTTCAGAACTATTCAC+TGG - chr8_1:71324269-71324288 None:intergenic 35.0%
!! TTCTGAAGTTGTTCCAACAA+AGG + chr8_1:71324277-71324296 Msa1211610:CDS 35.0%
ACAACTTCATCATCCTTTGT+TGG - chr8_1:71324293-71324312 None:intergenic 35.0%
AACAAAGGATGATGAAGTTG+TGG + chr8_1:71324292-71324311 Msa1211610:CDS 35.0%
!! TAGAGAAGTATTTACCGTTG+GGG - chr8_1:71324432-71324451 None:intergenic 35.0%
!! GATAGAGAAGTATTTACCGT+TGG - chr8_1:71324434-71324453 None:intergenic 35.0%
TCTCTTAATCTATCGGTGTA+CGG + chr8_1:71324585-71324604 Msa1211610:intron 35.0%
!! AGATGAATGATGGATGTCAA+TGG + chr8_1:71324708-71324727 Msa1211610:intron 35.0%
! TGTTTTCTAACTGGACATGA+TGG - chr8_1:71324803-71324822 None:intergenic 35.0%
ATCATGTCCAGTTAGAAAAC+AGG + chr8_1:71324802-71324821 Msa1211610:CDS 35.0%
!! TTGTTGTTGGTTTGTGTTGA+GGG - chr8_1:71325269-71325288 None:intergenic 35.0%
!! ATTGTTGTTGGTTTGTGTTG+AGG - chr8_1:71325270-71325289 None:intergenic 35.0%
CAAACCAACAACAATCTTCA+TGG + chr8_1:71325275-71325294 Msa1211610:CDS 35.0%
! AATGTTGAGATGATAGTGCA+GGG - chr8_1:71325355-71325374 None:intergenic 35.0%
TAAAGCTAAGAGTGGAAGAA+GGG - chr8_1:71325490-71325509 None:intergenic 35.0%
GCTAAAGCTGATTGAAAAGT+TGG - chr8_1:71325758-71325777 None:intergenic 35.0%
CCAGAATTGCACTCCATATA+TGG - chr8_1:71321661-71321680 None:intergenic 40.0%
CCATATATGGAGTGCAATTC+TGG + chr8_1:71321658-71321677 Msa1211610:exon 40.0%
TGATGGAGATAGTGAACTCA+AGG + chr8_1:71321690-71321709 Msa1211610:CDS 40.0%
AGGAATTAACGACCTGATCA+TGG - chr8_1:71322248-71322267 None:intergenic 40.0%
AATTACCTTTCGTGCATGCA+AGG + chr8_1:71322353-71322372 Msa1211610:intron 40.0%
AAAATACACCAGAACACCCA+AGG + chr8_1:71322865-71322884 Msa1211610:intron 40.0%
! TGATTTTTCCTTGGGTGTTC+TGG - chr8_1:71322876-71322895 None:intergenic 40.0%
ACTGAAAGATCAATTGAGGC+TGG + chr8_1:71323581-71323600 Msa1211610:CDS 40.0%
ATCCTCGCCCAAAAATGATA+AGG + chr8_1:71323616-71323635 Msa1211610:CDS 40.0%
!! AACCTTATCATTTTTGGGCG+AGG - chr8_1:71323621-71323640 None:intergenic 40.0%
AACAAAAGCTCAAATGGGTG+AGG + chr8_1:71323884-71323903 Msa1211610:CDS 40.0%
TGTTACTAGGAACTCTTCCA+AGG - chr8_1:71324085-71324104 None:intergenic 40.0%
AAATCAGGTAGCACAACTGA+AGG + chr8_1:71324224-71324243 Msa1211610:CDS 40.0%
AATCAGGTAGCACAACTGAA+GGG + chr8_1:71324225-71324244 Msa1211610:CDS 40.0%
TCAGAACTATTCACTGGACT+TGG - chr8_1:71324263-71324282 None:intergenic 40.0%
ATGATGAAGTTGTGGAGACT+TGG + chr8_1:71324300-71324319 Msa1211610:CDS 40.0%
TTATTGAGTGTCTTGCTTGG+TGG - chr8_1:71324326-71324345 None:intergenic 40.0%
! GTCTTATTGAGTGTCTTGCT+TGG - chr8_1:71324329-71324348 None:intergenic 40.0%
!! CAAACTCTAGCTTTCTTTGC+AGG - chr8_1:71324389-71324408 None:intergenic 40.0%
GCACCATGTAACATCGAATT+TGG - chr8_1:71324475-71324494 None:intergenic 40.0%
!! TGAATGATGGATGTCAATGG+AGG + chr8_1:71324711-71324730 Msa1211610:CDS 40.0%
! CACGAGATATTTTGTGCTTG+AGG + chr8_1:71324972-71324991 Msa1211610:intron 40.0%
TCAGGTACAAAGATGTGTTG+AGG + chr8_1:71325103-71325122 Msa1211610:intron 40.0%
!! ACCTGATAATAGCATCGATG+CGG - chr8_1:71325219-71325238 None:intergenic 40.0%
!! TGTTGTTGGTTTGTGTTGAG+GGG - chr8_1:71325268-71325287 None:intergenic 40.0%
TAGGCCATGAAGATTGTTGT+TGG - chr8_1:71325282-71325301 None:intergenic 40.0%
! GAATGTTGAGATGATAGTGC+AGG - chr8_1:71325356-71325375 None:intergenic 40.0%
GTGAGATCAAGAGTGATAGT+TGG - chr8_1:71325383-71325402 None:intergenic 40.0%
!! AAGAAGGGTATCTTGGTAGT+TGG - chr8_1:71325475-71325494 None:intergenic 40.0%
CTAAAGCTAAGAGTGGAAGA+AGG - chr8_1:71325491-71325510 None:intergenic 40.0%
AGGAGAACTAAAGCTAAGAG+TGG - chr8_1:71325498-71325517 None:intergenic 40.0%
CAATGCATGGGATTTGATTC+AGG - chr8_1:71325518-71325537 None:intergenic 40.0%
CTGAATCAAATCCCATGCAT+TGG + chr8_1:71325516-71325535 Msa1211610:CDS 40.0%
AGGAAGCTATTCCAATGCAT+GGG - chr8_1:71325530-71325549 None:intergenic 40.0%
GCAGCACTTTCTTCACTTAT+TGG + chr8_1:71325779-71325798 Msa1211610:CDS 40.0%
GGGAATCAAAATCAAAGTGC+AGG + chr8_1:71325815-71325834 Msa1211610:CDS 40.0%
CCATTCTGTGTATTGTTCAC+TGG - chr8_1:71325959-71325978 None:intergenic 40.0%
CCAGTGAACAATACACAGAA+TGG + chr8_1:71325956-71325975 Msa1211610:CDS 40.0%
!! GCACTTTTAGGTGCAGAAAA+TGG - chr8_1:71326010-71326029 None:intergenic 40.0%
TTGTCACTATTATCACCACC+AGG - chr8_1:71326043-71326062 None:intergenic 40.0%
! AATTCTGGGAGATCTGGTGA+TGG + chr8_1:71321673-71321692 Msa1211610:CDS 45.0%
AAGAGAAGTGAGCGTAGTAC+TGG + chr8_1:71321718-71321737 Msa1211610:CDS 45.0%
AATTAACGTGGGCCATGATC+AGG + chr8_1:71322233-71322252 Msa1211610:intron 45.0%
! TTAGGGGTTTGTTTGGGCTA+TGG - chr8_1:71322632-71322651 None:intergenic 45.0%
TTTGTGTGTGGCACATGCAT+AGG - chr8_1:71323184-71323203 None:intergenic 45.0%
AATGTAAGGAACAAGGAGCC+TGG + chr8_1:71323425-71323444 Msa1211610:intron 45.0%
TGGATGCAAAACAATTGGCC+AGG - chr8_1:71323446-71323465 None:intergenic 45.0%
GGGTGCTTCCTGTAAAACAT+AGG - chr8_1:71323552-71323571 None:intergenic 45.0%
AATGACTGAATACCGAGCAC+TGG + chr8_1:71323950-71323969 Msa1211610:CDS 45.0%
! GGAAGAGTTGTCACTTGGAT+TGG + chr8_1:71324181-71324200 Msa1211610:CDS 45.0%
GGATGTCAATGGAGGAAGTA+TGG + chr8_1:71324719-71324738 Msa1211610:CDS 45.0%
TGCAACGATAGTAAGCTCGA+GGG - chr8_1:71324772-71324791 None:intergenic 45.0%
GGTTCATCAACTTCCAACTC+TGG + chr8_1:71325236-71325255 Msa1211610:CDS 45.0%
! ATGATAGTGCAGGGTTGGAT+AGG - chr8_1:71325346-71325365 None:intergenic 45.0%
! TTGAGATGATAGTGCAGGGT+TGG - chr8_1:71325351-71325370 None:intergenic 45.0%
!! AGAGTGGAAGAAGGGTATCT+TGG - chr8_1:71325482-71325501 None:intergenic 45.0%
GAGGAAGCTATTCCAATGCA+TGG - chr8_1:71325531-71325550 None:intergenic 45.0%
!! GAAATGGGCTGAGATGTTTC+AGG + chr8_1:71325859-71325878 Msa1211610:CDS 45.0%
GGTGCAGAAAATGGCAAAGA+AGG - chr8_1:71326001-71326020 None:intergenic 45.0%
!!! GGAGATGCAGAAGCACTTTT+AGG - chr8_1:71326022-71326041 None:intergenic 45.0%
!! AAAAGTGCTTCTGCATCTCC+TGG + chr8_1:71326022-71326041 Msa1211610:CDS 45.0%
!! AATATATTATATATAAATAG+GGG + chr8_1:71322809-71322828 Msa1211610:intron 5.0%
!!! TATTTTCAATTTAATATTTA+CGG - chr8_1:71322972-71322991 None:intergenic 5.0%
!! AATTCAATAAAAATTAATAA+CGG - chr8_1:71323658-71323677 None:intergenic 5.0%
!!! ATTAATTTTTATTGAATTAT+TGG + chr8_1:71323660-71323679 Msa1211610:intron 5.0%
! GAGTGCAATTCTGGGAGATC+TGG + chr8_1:71321667-71321686 Msa1211610:CDS 50.0%
GTTTGCCTTGCATGCACGAA+AGG - chr8_1:71322361-71322380 None:intergenic 50.0%
TTGGGCGAGGATATTGTGCT+TGG - chr8_1:71323608-71323627 None:intergenic 50.0%
! GATCTTGTTTCCCTCAGCCT+TGG + chr8_1:71324065-71324084 Msa1211610:CDS 50.0%
AGGAACTCTTCCAAGGCTGA+GGG - chr8_1:71324078-71324097 None:intergenic 50.0%
TAGGAACTCTTCCAAGGCTG+AGG - chr8_1:71324079-71324098 None:intergenic 50.0%
AGCAAGATGTGACACCCCAA+CGG + chr8_1:71324415-71324434 Msa1211610:CDS 50.0%
GATAGTAAGCTCGAGGGCAA+GGG - chr8_1:71324766-71324785 None:intergenic 50.0%
GTGCAACGATAGTAAGCTCG+AGG - chr8_1:71324773-71324792 None:intergenic 50.0%
TTGCTGAAAGTGGAAGGCTG+TGG - chr8_1:71325169-71325188 None:intergenic 50.0%
TGGCTGTTGCTGAAAGTGGA+AGG - chr8_1:71325175-71325194 None:intergenic 50.0%
TCCACTTTCAGCAACAGCCA+TGG + chr8_1:71325175-71325194 Msa1211610:CDS 50.0%
CATGGCTTCCACAACTTCTG+CGG + chr8_1:71325193-71325212 Msa1211610:CDS 50.0%
! GCCGCATCGATGCTATTATC+AGG + chr8_1:71325215-71325234 Msa1211610:CDS 50.0%
TGAGGGGATTGAACCAGAGT+TGG - chr8_1:71325252-71325271 None:intergenic 50.0%
! GGGGTTTGTTTGGGCTATGG+AGG - chr8_1:71322629-71322648 None:intergenic 55.0%
CGATAGTAAGCTCGAGGGCA+AGG - chr8_1:71324767-71324786 None:intergenic 55.0%
GCCATGGCTGTTGCTGAAAG+TGG - chr8_1:71325179-71325198 None:intergenic 55.0%
CGCAGAAGTTGTGGAAGCCA+TGG - chr8_1:71325195-71325214 None:intergenic 55.0%
AGTGCTTCTGCATCTCCTGG+TGG + chr8_1:71326025-71326044 Msa1211610:CDS 55.0%
CGATGCGGCCGCAGAAGTTG+TGG - chr8_1:71325204-71325223 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 71321614 71326072 71321614 ID=Msa1211610;Name=Msa1211610
chr8_1 mRNA 71321614 71326072 71321614 ID=Msa1211610-mRNA-1;Parent=Msa1211610;Name=Msa1211610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|0.6|1|1|1|5|0|616
chr8_1 exon 71321614 71321786 71321614 ID=Msa1211610-mRNA-1:exon:23915;Parent=Msa1211610-mRNA-1
chr8_1 exon 71323563 71323637 71323563 ID=Msa1211610-mRNA-1:exon:23916;Parent=Msa1211610-mRNA-1
chr8_1 exon 71323864 71324436 71323864 ID=Msa1211610-mRNA-1:exon:23917;Parent=Msa1211610-mRNA-1
chr8_1 exon 71324710 71324823 71324710 ID=Msa1211610-mRNA-1:exon:23918;Parent=Msa1211610-mRNA-1
chr8_1 exon 71325107 71326072 71325107 ID=Msa1211610-mRNA-1:exon:23919;Parent=Msa1211610-mRNA-1
chr8_1 five_prime_UTR 71321614 71321663 71321614 ID=Msa1211610-mRNA-1:five_prime_utr;Parent=Msa1211610-mRNA-1
chr8_1 CDS 71321664 71321786 71321664 ID=Msa1211610-mRNA-1:cds;Parent=Msa1211610-mRNA-1
chr8_1 CDS 71323563 71323637 71323563 ID=Msa1211610-mRNA-1:cds;Parent=Msa1211610-mRNA-1
chr8_1 CDS 71323864 71324436 71323864 ID=Msa1211610-mRNA-1:cds;Parent=Msa1211610-mRNA-1
chr8_1 CDS 71324710 71324823 71324710 ID=Msa1211610-mRNA-1:cds;Parent=Msa1211610-mRNA-1
chr8_1 CDS 71325107 71326072 71325107 ID=Msa1211610-mRNA-1:cds;Parent=Msa1211610-mRNA-1
Gene Sequence

>Msa1211610

ATGGAGTGCAATTCTGGGAGATCTGGTGATGGAGATAGTGAACTCAAGGAAGATAAGAGAAGTGAGCGTAGTACTGGTGATGATCATGAAAGTCATCATCAAAAAAAGGAGACTATTGTTGAGGAAGCACCCATTGCTAATACTGAAAGATCAATTGAGGCTGGTCCAAGCACAATATCCTCGCCCAAAAATGATAAGGTTGATGATCAGCTTGAGACAACAAAAGCTCAAATGGGTGAGGTGAGAGAAGAAAATCAACGGTTAAAGATGTGCTTGAACAAAATAATGACTGAATACCGAGCACTGGAAATGCAATTTAACAATATGGTTAAGCAAGAAACAAAAAAGAACAATGTTGATCACAATGACAATAACCATGAAGAAATAAATGCAGAATCAGATCTTGTTTCCCTCAGCCTTGGAAGAGTTCCTAGTAACAATATTCCAAAAAATGATCAAGACAAAGTTAACAAAGTGTCTAAACTAGCCTTGAATAATGATGAAGAATTCAATAAGGAAGAGTTGTCACTTGGATTGGAATGTAAATTTGAAACATCAAAATCAGGTAGCACAACTGAAGGGTTACCAAATATTCCAAGTCCAGTGAATAGTTCTGAAGTTGTTCCAACAAAGGATGATGAAGTTGTGGAGACTTGGCCACCAAGCAAGACACTCAATAAGACAATGAGAGACGCTGAAGATGAAGTTGCTCAACAAACTCCTGCAAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACCCCAACGATGAATGATGGATGTCAATGGAGGAAGTATGGACAAAAAATTGCAAAGGGAAACCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGTCCAGTTAGAAAACAGGTACAAAGATGTGTTGAGGACATGTCTATTCTAATCACAACATACGAAGGGACACACAACCACAGCCTTCCACTTTCAGCAACAGCCATGGCTTCCACAACTTCTGCGGCCGCATCGATGCTATTATCAGGTTCATCAACTTCCAACTCTGGTTCAATCCCCTCAACACAAACCAACAACAATCTTCATGGCCTAAACTTTTATCTACCAGATGGTTCAAAATCAAATCAATTATACCTATCCAACCCTGCACTATCATCTCAACATTCACATCCAACTATCACTCTTGATCTCACTTCAAACCCATCAAATTCTTCAACATCATCGCCCTTTGTTAGATTCAATTCAAGCTACAACAACAATAACCAACTACCAAGATACCCTTCTTCCACTCTTAGCTTTAGTTCTCCTGAATCAAATCCCATGCATTGGAATAGCTTCCTCAATTATGCTACTACTCAAAATCAACCATATAGTAATAATAGGAACAATAATAACCTAAGCACTTTAAACTTTGGTAGACAAAATACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAACAATAGTTCAAACATTTCACAACATGTAGGTTTACAAGATAGTACTATATCTGCAGCAACAAAAGCTATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTTCTTCACTTATTGGAAACACTAATCAAGGGAATCAAAATCAAAGTGCAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCAGGTTTCTTCTACTTCATTGCCTTCATCAAGTTCTAAAGTAAATGGTTGTGGTTCAAGTTTCTTGAACAAAACGGCACCAGTGAACAATACACAGAATGGAAGTTTGATGTTGTTATCTCCTTCTTTGCCATTTTCTGCACCTAAAAGTGCTTCTGCATCTCCTGGTGGTGATAATAGTGACAATACCAATTAA
Protein sequence

>Msa1211610

MECNSGRSGDGDSELKEDKRSERSTGDDHESHHQKKETIVEEAPIANTERSIEAGPSTISSPKNDKVDDQLETTKAQMGEVREENQRLKMCLNKIMTEYRALEMQFNNMVKQETKKNNVDHNDNNHEEINAESDLVSLSLGRVPSNNIPKNDQDKVNKVSKLALNNDEEFNKEELSLGLECKFETSKSGSTTEGLPNIPSPVNSSEVVPTKDDEVVETWPPSKTLNKTMRDAEDEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVEDMSILITTYEGTHNHSLPLSATAMASTTSAAASMLLSGSSTSNSGSIPSTQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTSNPSNSSTSSPFVRFNSSYNNNNQLPRYPSSTLSFSSPESNPMHWNSFLNYATTQNQPYSNNRNNNNLSTLNFGRQNTMESIYQTYMQKNNNSSNISQHVGLQDSTISAATKAITADPTFQSALAAALSSLIGNTNQGNQNQSAGENLSQKMKWAEMFQVSSTSLPSSSSKVNGCGSSFLNKTAPVNNTQNGSLMLLSPSLPFSAPKSASASPGGDNSDNTN*