AlfalfaGEDB | Msa1224510

M. sativa cultivar zhongmu-4 / Msa1224510

KEGG: -
GO: -
PFAM: PF03765.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224510	XP_039689563.1	96.667	330	11	0	1	330	1	330	0.0	670

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224510	sp\|F4JVA9\|SFH2_ARATH	32.340	235	139	5	34	254	97	325	1.00e-21	99.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026420	Msa1224510	0.859253	4.699407e-63	-8.615850e-47
Msa0030800	Msa1224510	0.831504	1.608123e-55	-8.615850e-47
Msa0034540	Msa1224510	0.806399	8.381874e-50	-8.615850e-47
Msa0035790	Msa1224510	0.807580	4.714818e-50	-8.615850e-47
Msa0046680	Msa1224510	0.814645	1.386162e-51	-8.615850e-47
Msa0051480	Msa1224510	0.867580	1.232163e-65	-8.615850e-47
Msa0051620	Msa1224510	0.858476	8.024029e-63	-8.615850e-47
Msa0051730	Msa1224510	0.856280	3.578367e-62	-8.615850e-47
Msa0071470	Msa1224510	0.817159	3.810194e-52	-8.615850e-47
Msa0078210	Msa1224510	0.825496	4.541053e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224510	MtrunA17_Chr4g0076441	96.667	330	11	0	1	330	1	330	0.0	670
Msa1224510	MtrunA17_Chr2g0290661	81.553	309	57	0	2	310	7	315	0.0	514
Msa1224510	MtrunA17_Chr3g0102691	66.978	321	102	3	1	318	1	320	2.35e-164	462
Msa1224510	MtrunA17_Chr4g0075941	95.783	166	7	0	1	166	1	166	1.54e-115	331
Msa1224510	MtrunA17_Chr7g0236461	29.603	277	165	9	26	290	95	353	1.85e-21	95.1
Msa1224510	MtrunA17_Chr4g0035361	29.437	231	151	4	34	254	2	230	1.97e-21	94.7
Msa1224510	MtrunA17_Chr3g0144891	29.870	231	150	4	34	254	98	326	7.25e-21	93.2
Msa1224510	MtrunA17_Chr3g0144911	29.600	250	157	7	8	251	93	329	9.49e-20	89.4
Msa1224510	MtrunA17_Chr8g0369291	31.020	245	144	7	26	254	85	320	1.35e-19	89.7
Msa1224510	MtrunA17_Chr5g0399151	29.493	217	143	4	26	236	110	322	3.99e-19	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224510	AT1G55840.1	64.596	322	110	2	2	322	7	325	5.09e-165	462
Msa1224510	AT5G47730.4	70.550	309	89	1	2	310	7	313	5.50e-165	463
Msa1224510	AT5G47730.1	70.550	309	89	1	2	310	7	313	5.50e-165	463
Msa1224510	AT1G55840.2	67.333	300	94	2	24	322	2	298	1.39e-159	448
Msa1224510	AT5G47730.2	74.231	260	65	1	51	310	1	258	1.58e-142	404
Msa1224510	AT5G47730.3	74.231	260	65	1	51	310	1	258	1.58e-142	404
Msa1224510	AT4G39180.3	29.195	298	176	9	34	310	97	380	4.88e-23	100
Msa1224510	AT4G39180.2	29.195	298	176	9	34	310	97	380	4.88e-23	100
Msa1224510	AT4G39180.1	32.340	235	139	5	34	254	97	325	1.02e-22	99.0
Msa1224510	AT3G24840.7	30.380	237	148	6	26	250	98	329	9.93e-22	96.3

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Find 112 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAACCTTACTGCCT+AGG	0.504328	8_1:+89488421	None:intergenic
AAACCAAACCTTACTGCCTA+GGG	0.576178	8_1:+89488422	None:intergenic
AAACTTGTAGAAAACTGGGG+TGG	0.683488	8_1:-89488773	Msa1224510:three_prime_UTR
AAATAAGTATGAGTCTTCTC+AGG	0.511983	8_1:+89490720	None:intergenic
AACAAGCTGAAAATATGTAT+GGG	0.528848	8_1:+89490685	None:intergenic
AACCTCCGGATGTGGATACA+AGG	0.521017	8_1:-89488988	Msa1224510:CDS
AAGCGAGAACTGCTATTCCT+TGG	0.507986	8_1:-89489116	Msa1224510:CDS
AAGGGATTGGGATCCTTCTA+AGG	0.324848	8_1:-89491930	Msa1224510:CDS
AATGAAACGCTACTAAAACA+AGG	0.692072	8_1:-89488820	Msa1224510:three_prime_UTR
AATGATCAGAATGTTCATCA+AGG	0.572623	8_1:-89491989	Msa1224510:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCAACTCAAAGCAATAAAA+TGG	-	chr8_1:89488546-89488565	Msa1224510:three_prime_UTR	30.0%
AATGATCAGAATGTTCATCA+AGG	-	chr8_1:89488725-89488744	Msa1224510:three_prime_UTR	30.0%
ATAAATGTAAAGGATGAAGG+AGG	+	chr8_1:89489025-89489044	None:intergenic	30.0%
AATAGAGGGGATAAATGTAA+AGG	+	chr8_1:89489035-89489054	None:intergenic	30.0%
TGACTTAGTTAGTAGTCAAT+TGG	-	chr8_1:89489214-89489233	Msa1224510:intron	30.0%
TGAAAAGGAAAGCAAAATGA+AGG	+	chr8_1:89489247-89489266	None:intergenic	30.0%
CAACACCTTGATTAAACTTA+CGG	+	chr8_1:89489323-89489342	None:intergenic	30.0%
AGAAGATAGAGTAATAGATG+GGG	+	chr8_1:89489364-89489383	None:intergenic	30.0%
CAGAAGATAGAGTAATAGAT+GGG	+	chr8_1:89489365-89489384	None:intergenic	30.0%
ACAGAAGATAGAGTAATAGA+TGG	+	chr8_1:89489366-89489385	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	89488355	89492381	89488355	ID=Msa1224510;Name=Msa1224510
chr8_1	mRNA	89488355	89492381	89488355	ID=Msa1224510-mRNA-1;Parent=Msa1224510;Name=Msa1224510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=190\|1\|1\|1\|0.9\|0.81\|11\|543\|330
chr8_1	exon	89488355	89489212	89488355	ID=Msa1224510-mRNA-1:exon:32526;Parent=Msa1224510-mRNA-1
chr8_1	exon	89490460	89490540	89490460	ID=Msa1224510-mRNA-1:exon:32525;Parent=Msa1224510-mRNA-1
chr8_1	exon	89490680	89490781	89490680	ID=Msa1224510-mRNA-1:exon:32524;Parent=Msa1224510-mRNA-1
chr8_1	exon	89491074	89491169	89491074	ID=Msa1224510-mRNA-1:exon:32523;Parent=Msa1224510-mRNA-1
chr8_1	exon	89491260	89491319	89491260	ID=Msa1224510-mRNA-1:exon:32522;Parent=Msa1224510-mRNA-1
chr8_1	exon	89491415	89491468	89491415	ID=Msa1224510-mRNA-1:exon:32521;Parent=Msa1224510-mRNA-1
chr8_1	exon	89491570	89491647	89491570	ID=Msa1224510-mRNA-1:exon:32520;Parent=Msa1224510-mRNA-1
chr8_1	exon	89491734	89491787	89491734	ID=Msa1224510-mRNA-1:exon:32519;Parent=Msa1224510-mRNA-1
chr8_1	exon	89491919	89492002	89491919	ID=Msa1224510-mRNA-1:exon:32518;Parent=Msa1224510-mRNA-1
chr8_1	exon	89492103	89492344	89492103	ID=Msa1224510-mRNA-1:exon:32517;Parent=Msa1224510-mRNA-1
chr8_1	exon	89492365	89492381	89492365	ID=Msa1224510-mRNA-1:exon:32516;Parent=Msa1224510-mRNA-1
chr8_1	five_prime_UTR	89492365	89492381	89492365	ID=Msa1224510-mRNA-1:five_prime_utr;Parent=Msa1224510-mRNA-1
chr8_1	five_prime_UTR	89492172	89492344	89492172	ID=Msa1224510-mRNA-1:five_prime_utr;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89492103	89492171	89492103	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89491919	89492002	89491919	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89491734	89491787	89491734	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89491570	89491647	89491570	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89491415	89491468	89491415	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89491260	89491319	89491260	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89491074	89491169	89491074	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89490680	89490781	89490680	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89490460	89490540	89490460	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	CDS	89488898	89489212	89488898	ID=Msa1224510-mRNA-1:cds;Parent=Msa1224510-mRNA-1
chr8_1	three_prime_UTR	89488355	89488897	89488355	ID=Msa1224510-mRNA-1:three_prime_utr;Parent=Msa1224510-mRNA-1

Gene Sequence

>Msa1224510

ATGGATTCCATGAATCAGTTGCAGGAATTAATCAGCAAAGTTGACCACCCATTGCAGACAACTTTTCAGAATGTTCATCAAGGATATGTCACTGAAAACTTGACTCGCTTTCTAAAAGCAAGGGATTGGGATCCTTCTAAGGCTTATCAAATGTTGATTGATTGTTTAAACTGGAGAGTACAAAATCAGATTGACAATATATTATCTAAACCAATTATTCCTGCTGATTTATATAGAACAATACGTGATTCACAACTCATTGGATTGTCCGGGTATACAAGAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGACTTAGCACATTTGACAAAGCATCCGTCCATTATTATGTGCAGTCTCACATTCAAATGAATGAATATCGCGATCGTGTAATCTTGCCTTCTGCATCGAAGAAGCATGGACGGCCTATTACCACTTGTGTAAAGGTTTTAGACATGACTGGCCTGAAGCTCTCGGCCTTGAATCACATTAAGTTGTTAACTATTATATCATCCATTGATGATCTCAACTATCCTGAGAAGACTCATACTTATTTCATTGTAAATGCCCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTTTACACGAGAGGACAAGAAGAAAAGTGCAGGTCTTATCAGGATGCGGACGAGAGGAGTTGTTAAATATCATGGATTATGCATCTCTGCCACATTTCTGTAGAAAAGAAGGCTCTGGATCATCCAGACATTCAGAAGGTGGAAGCGAGAACTGCTATTCCTTGGATCATCCCCTTCACCAACAGCTTTACAACTACATCAATCAGCAAGCCAGACTCCGTGAAGCTGTTGCACCCATCAAGCAGGGATCATTTCATGTGGAATTTCCAGAACCTCCGGATGTGGATACAAGGGTTGCCAAGACTATAGAGTCAAAATTTGATAGCCTAACCTTGAATGGAAATAAGGAACAATTGAACAATTGGACTAGAGCACAGGCCTAA

Protein sequence

>Msa1224510

MDSMNQLQELISKVDHPLQTTFQNVHQGYVTENLTRFLKARDWDPSKAYQMLIDCLNWRVQNQIDNILSKPIIPADLYRTIRDSQLIGLSGYTREGLPVFAIGVGLSTFDKASVHYYVQSHIQMNEYRDRVILPSASKKHGRPITTCVKVLDMTGLKLSALNHIKLLTIISSIDDLNYPEKTHTYFIVNAPYIFSACWKVVKPLLHERTRRKVQVLSGCGREELLNIMDYASLPHFCRKEGSGSSRHSEGGSENCYSLDHPLHQQLYNYINQQARLREAVAPIKQGSFHVEFPEPPDVDTRVAKTIESKFDSLTLNGNKEQLNNWTRAQA*