AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299480 MtrunA17_Chr4g0060271 96.110 617 19 2 1 616 1 613 0.0 1216
Msa1299480 MtrunA17_Chr7g0216891 40.317 568 256 20 68 599 38 558 1.68e-96 307
Msa1299480 MtrunA17_Chr2g0322391 34.091 484 220 17 59 527 157 556 2.67e-55 197
Msa1299480 MtrunA17_Chr3g0099641 37.791 344 160 9 64 402 87 381 1.23e-53 190
Msa1299480 MtrunA17_Chr4g0051181 36.194 536 260 21 1 526 10 473 2.93e-51 184
Msa1299480 MtrunA17_Chr2g0288871 35.417 480 196 16 70 527 143 530 2.19e-49 180
Msa1299480 MtrunA17_Chr4g0075201 37.798 336 154 8 70 405 120 400 4.34e-49 178
Msa1299480 MtrunA17_Chr7g0270831 55.090 167 57 2 233 396 190 341 3.03e-47 171
Msa1299480 MtrunA17_Chr2g0302391 49.143 175 77 3 225 399 181 343 2.10e-43 161
Msa1299480 MtrunA17_Chr4g0025061 51.948 154 61 3 244 397 345 485 1.02e-41 159
Msa1299480 MtrunA17_Chr4g0024391 28.485 495 239 15 82 527 12 440 6.33e-38 147
Msa1299480 MtrunA17_Chr4g0001361 45.528 123 50 3 242 347 143 265 4.16e-25 106
Msa1299480 MtrunA17_Chr1g0150281 50.000 94 47 0 242 335 123 216 8.67e-25 104
Msa1299480 MtrunA17_Chr1g0150271 45.918 98 51 1 240 335 80 177 1.20e-24 103
Msa1299480 MtrunA17_Chr5g0432161 45.133 113 54 3 213 321 374 482 2.14e-24 107
Msa1299480 MtrunA17_Chr3g0136961 63.333 60 22 0 258 317 137 196 2.34e-24 103
Msa1299480 MtrunA17_Chr3g0106491 52.564 78 36 1 242 319 348 424 1.46e-23 104
Msa1299480 MtrunA17_Chr3g0106491 49.206 63 30 2 259 321 198 258 3.38e-13 72.4
Msa1299480 MtrunA17_Chr5g0445311 35.196 179 98 4 157 335 279 439 2.04e-23 104
Msa1299480 MtrunA17_Chr5g0445311 50.820 61 28 2 259 319 200 258 1.28e-11 67.4
Msa1299480 MtrunA17_Chr4g0004911 50.633 79 38 1 242 320 319 396 1.03e-22 102
Msa1299480 MtrunA17_Chr4g0004911 48.333 60 30 1 260 319 185 243 7.35e-13 71.2
Msa1299480 MtrunA17_Chr3g0101131 45.794 107 53 2 213 319 373 474 1.51e-22 102
Msa1299480 MtrunA17_Chr3g0101131 49.180 61 29 2 259 319 243 301 2.09e-11 67.0
Msa1299480 MtrunA17_Chr7g0243891 52.564 78 36 1 242 319 357 433 1.67e-22 101
Msa1299480 MtrunA17_Chr7g0243891 51.613 62 28 2 260 321 217 276 4.42e-12 68.9
Msa1299480 MtrunA17_Chr2g0333851 43.478 92 41 1 239 319 138 229 3.52e-22 97.8
Msa1299480 MtrunA17_Chr5g0418191 36.842 171 101 3 182 350 245 410 3.83e-22 99.8
Msa1299480 MtrunA17_Chr5g0418191 50.746 67 30 3 253 319 146 209 1.18e-13 73.6
Msa1299480 MtrunA17_Chr7g0218081 42.478 113 60 2 226 334 373 484 5.68e-22 99.8
Msa1299480 MtrunA17_Chr7g0218081 42.222 90 49 3 230 319 200 286 4.25e-12 68.9
Msa1299480 MtrunA17_Chr3g0079691 51.948 77 36 1 243 319 479 554 1.17e-21 99.8
Msa1299480 MtrunA17_Chr3g0079691 40.000 100 55 4 220 319 244 338 7.33e-13 71.6
Msa1299480 MtrunA17_Chr7g0249311 38.793 116 70 1 242 357 375 489 2.23e-21 98.6
Msa1299480 MtrunA17_Chr7g0249311 48.485 66 32 2 257 322 177 240 3.12e-11 66.6
Msa1299480 MtrunA17_Chr4g0042831 50.000 80 39 1 244 323 263 341 2.34e-21 96.7
Msa1299480 MtrunA17_Chr4g0042831 31.515 165 100 5 259 421 145 298 1.68e-12 69.7
Msa1299480 MtrunA17_Chr7g0263531 50.649 77 37 1 247 323 349 424 2.76e-21 97.1
Msa1299480 MtrunA17_Chr7g0263531 45.679 81 41 3 254 334 185 262 1.63e-13 73.2
Msa1299480 MtrunA17_Chr7g0249301 52.703 74 34 1 246 319 279 351 4.91e-21 95.5
Msa1299480 MtrunA17_Chr7g0249301 49.206 63 30 2 257 319 60 120 2.87e-11 65.9
Msa1299480 MtrunA17_Chr1g0194481 40.000 125 69 4 226 348 128 248 4.98e-21 94.7
Msa1299480 MtrunA17_Chr7g0270191 39.167 120 60 3 226 337 104 218 1.18e-20 92.8
Msa1299480 MtrunA17_Chr5g0419241 66.071 56 19 0 232 287 50 105 1.94e-20 87.0
Msa1299480 MtrunA17_Chr4g0074001 51.250 80 38 1 241 320 341 419 4.76e-20 94.0
Msa1299480 MtrunA17_Chr4g0051881 39.423 104 62 1 246 349 165 267 6.25e-20 91.7
Msa1299480 MtrunA17_Chr8g0335811 46.988 83 43 1 235 317 130 211 7.94e-20 89.0
Msa1299480 MtrunA17_Chr5g0447701 45.882 85 45 1 244 328 237 320 1.60e-19 91.3
Msa1299480 MtrunA17_Chr2g0294231 48.052 77 39 1 243 319 187 262 3.71e-19 89.7
Msa1299480 MtrunA17_Chr3g0129361 47.368 76 39 1 242 317 127 201 4.41e-19 86.7
Msa1299480 MtrunA17_Chr4g0068541 47.436 78 40 1 243 320 192 268 7.65e-19 89.4
Msa1299480 MtrunA17_Chr1g0150801 49.315 73 36 1 244 316 87 158 8.43e-19 84.0
Msa1299480 MtrunA17_Chr5g0401821 55.224 67 28 1 254 320 196 260 1.94e-18 85.9
Msa1299480 MtrunA17_Chr5g0443131 48.649 74 37 1 246 319 144 216 2.46e-18 86.3
Msa1299480 MtrunA17_Chr4g0053281 57.627 59 25 0 260 318 267 325 2.59e-18 86.7
Msa1299480 MtrunA17_Chr8g0379461 55.385 65 29 0 259 323 76 140 3.08e-18 84.7
Msa1299480 MtrunA17_Chr1g0188941 43.590 78 43 1 242 319 34 110 3.16e-18 80.9
Msa1299480 MtrunA17_Chr7g0270051 44.792 96 50 1 259 354 53 145 3.20e-18 85.1
Msa1299480 MtrunA17_Chr5g0418781 38.462 117 64 3 221 336 92 201 4.61e-18 84.7
Msa1299480 MtrunA17_Chr7g0224801 48.571 70 35 1 249 318 83 151 6.56e-18 81.6
Msa1299480 MtrunA17_Chr2g0319961 49.367 79 40 0 250 328 71 149 1.16e-17 83.2
Msa1299480 MtrunA17_Chr8g0383351 46.753 77 39 2 242 317 142 217 1.26e-17 82.4
Msa1299480 MtrunA17_Chr8g0383251 42.857 77 43 1 246 322 95 170 1.44e-17 81.3
Msa1299480 MtrunA17_Chr2g0289181 41.818 110 53 3 247 347 4 111 3.77e-17 81.3
Msa1299480 MtrunA17_Chr3g0129321 46.753 77 40 1 246 322 105 180 4.69e-17 80.1
Msa1299480 MtrunA17_Chr1g0184691 53.448 58 27 0 260 317 294 351 8.60e-17 82.4
Msa1299480 MtrunA17_Chr7g0228941 48.571 70 33 2 248 316 42 109 8.87e-17 77.0
Msa1299480 MtrunA17_Chr1g0147881 52.542 59 28 0 260 318 263 321 1.03e-16 82.0
Msa1299480 MtrunA17_Chr2g0284321 53.333 60 28 0 260 319 36 95 1.44e-16 79.0
Msa1299480 MtrunA17_Chr8g0386241 40.244 82 48 1 244 325 88 168 2.18e-16 77.8
Msa1299480 MtrunA17_Chr3g0139021 40.870 115 48 4 220 316 259 371 3.16e-16 81.3
Msa1299480 MtrunA17_Chr7g0248721 50.000 74 35 2 243 316 125 196 3.43e-16 78.2
Msa1299480 MtrunA17_Chr2g0293481 46.667 75 40 0 260 334 268 342 4.99e-16 81.3
Msa1299480 MtrunA17_Chr6g0485431 47.368 76 38 2 246 320 141 215 1.21e-15 79.0
Msa1299480 MtrunA17_Chr7g0238921 58.621 58 23 1 259 316 124 180 4.28e-15 76.6
Msa1299480 MtrunA17_Chr8g0348311 47.887 71 37 0 259 329 155 225 6.95e-15 76.3
Msa1299480 MtrunA17_Chr4g0071521 50.000 64 30 1 254 317 242 303 7.30e-15 75.9
Msa1299480 MtrunA17_Chr7g0248691 39.560 91 52 1 242 329 134 224 1.29e-14 75.5
Msa1299480 MtrunA17_Chr8g0387501 42.466 73 42 0 257 329 127 199 5.37e-14 72.8
Msa1299480 MtrunA17_Chr5g0432071 42.308 78 43 2 259 336 104 179 5.70e-14 71.2
Msa1299480 MtrunA17_Chr1g0202461 45.714 70 38 0 260 329 262 331 1.43e-13 72.8
Msa1299480 MtrunA17_Chr8g0387981 35.811 148 68 7 179 314 57 189 2.72e-12 68.6
Msa1299480 MtrunA17_Chr1g0189391 37.234 94 55 3 227 317 63 155 4.75e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299480 AT5G15130.1 42.596 493 199 18 63 527 28 464 5.62e-88 284
Msa1299480 AT5G15130.2 42.678 478 190 18 78 527 1 422 3.00e-84 273
Msa1299480 AT1G18860.1 38.596 570 234 19 7 527 8 510 2.36e-79 261
Msa1299480 AT1G69810.1 38.485 330 169 9 68 394 23 321 1.12e-56 196
Msa1299480 AT1G68150.1 81.633 98 18 0 243 340 219 316 4.54e-53 186
Msa1299480 AT4G04450.2 37.746 355 154 12 67 394 8 322 8.22e-53 187
Msa1299480 AT4G04450.1 38.310 355 152 12 67 394 102 416 6.40e-52 187
Msa1299480 AT1G62300.1 42.333 300 127 7 234 531 288 543 1.18e-46 173
Msa1299480 AT1G69810.2 38.435 294 147 9 104 394 1 263 1.73e-45 164
Msa1299480 AT4G01720.1 77.778 81 18 0 239 319 219 299 2.22e-39 151
Msa1299480 AT4G31800.2 54.321 81 37 0 257 337 109 189 2.75e-26 108
Msa1299480 AT4G31800.1 54.321 81 37 0 257 337 174 254 4.52e-26 109
Msa1299480 AT2G25000.2 65.079 63 22 0 257 319 101 163 9.30e-25 103
Msa1299480 AT2G25000.4 65.079 63 22 0 257 319 101 163 9.30e-25 103
Msa1299480 AT2G25000.3 65.079 63 22 0 257 319 123 185 1.62e-24 103
Msa1299480 AT2G25000.1 65.079 63 22 0 257 319 144 206 1.83e-24 103
Msa1299480 AT1G80840.1 61.538 65 25 0 255 319 142 206 2.76e-24 103
Msa1299480 AT2G38470.1 47.778 90 46 1 242 331 345 433 1.69e-23 105
Msa1299480 AT2G38470.1 51.667 60 27 2 260 319 185 242 9.74e-13 71.2
Msa1299480 AT1G29860.1 36.364 154 85 4 243 396 120 260 1.87e-23 101
Msa1299480 AT5G56270.1 54.545 77 34 1 243 319 471 546 4.75e-23 104
Msa1299480 AT5G56270.1 51.667 60 27 2 260 319 274 331 9.44e-12 68.6
Msa1299480 AT4G26640.5 48.810 84 42 1 241 324 187 269 1.19e-22 100
Msa1299480 AT4G26640.5 39.773 88 49 3 251 336 25 110 1.05e-11 67.4
Msa1299480 AT4G26640.6 48.810 84 42 1 241 324 187 269 1.19e-22 100
Msa1299480 AT4G26640.6 39.773 88 49 3 251 336 25 110 1.05e-11 67.4
Msa1299480 AT4G26640.4 48.810 84 42 1 241 324 187 269 1.19e-22 100
Msa1299480 AT4G26640.4 39.773 88 49 3 251 336 25 110 1.05e-11 67.4
Msa1299480 AT4G26640.3 48.810 84 42 1 241 324 187 269 1.19e-22 100
Msa1299480 AT4G26640.3 39.773 88 49 3 251 336 25 110 1.05e-11 67.4
Msa1299480 AT4G30935.1 45.872 109 56 2 212 320 286 391 1.42e-22 101
Msa1299480 AT2G03340.1 41.667 108 62 1 217 324 373 479 3.06e-22 101
Msa1299480 AT2G03340.1 50.746 67 30 3 253 319 245 308 4.13e-14 75.9
Msa1299480 AT4G26640.1 48.810 84 42 1 241 324 291 373 3.46e-22 100
Msa1299480 AT4G26640.1 46.479 71 34 3 251 319 129 197 1.84e-11 67.4
Msa1299480 AT4G26640.7 48.810 84 42 1 241 324 323 405 3.78e-22 100
Msa1299480 AT4G26640.7 46.479 71 34 3 251 319 161 229 1.80e-11 67.4
Msa1299480 AT4G26640.2 48.810 84 42 1 241 324 363 445 5.53e-22 100
Msa1299480 AT4G26640.2 46.479 71 34 3 251 319 201 269 2.16e-11 67.4
Msa1299480 AT1G13960.1 44.792 96 46 2 230 319 374 468 1.02e-21 99.4
Msa1299480 AT1G13960.1 49.254 67 31 3 253 319 224 287 6.44e-13 72.0
Msa1299480 AT1G13960.2 52.703 74 34 1 246 319 243 315 1.51e-21 97.1
Msa1299480 AT1G13960.2 49.254 67 31 3 253 319 71 134 7.43e-13 70.9
Msa1299480 AT5G07100.2 51.282 78 37 1 242 319 124 200 1.54e-21 94.0
Msa1299480 AT5G07100.2 42.105 76 43 1 257 332 22 96 3.84e-12 66.6
Msa1299480 AT5G07100.4 51.282 78 37 1 242 319 124 200 1.54e-21 94.0
Msa1299480 AT5G07100.4 42.105 76 43 1 257 332 22 96 3.84e-12 66.6
Msa1299480 AT5G07100.5 51.282 78 37 1 242 319 124 200 1.54e-21 94.0
Msa1299480 AT5G07100.5 42.105 76 43 1 257 332 22 96 3.84e-12 66.6
Msa1299480 AT5G07100.3 51.282 78 37 1 242 319 124 200 1.54e-21 94.0
Msa1299480 AT5G07100.3 42.105 76 43 1 257 332 22 96 3.84e-12 66.6
Msa1299480 AT5G07100.1 51.282 78 37 1 242 319 217 293 2.12e-21 95.9
Msa1299480 AT5G07100.1 42.105 76 43 1 257 332 115 189 8.74e-12 67.0
Msa1299480 AT2G04880.2 52.000 75 35 1 245 319 269 342 3.34e-21 97.4
Msa1299480 AT2G04880.2 41.237 97 52 4 257 353 109 200 9.37e-13 71.2
Msa1299480 AT5G26170.1 50.685 73 35 1 245 317 99 170 3.41e-21 91.7
Msa1299480 AT4G26440.1 36.517 178 94 7 210 386 326 485 3.94e-21 97.8
Msa1299480 AT4G26440.1 49.254 67 31 3 253 319 173 236 1.69e-11 67.4
Msa1299480 AT2G04880.1 52.000 75 35 1 245 319 293 366 5.37e-21 97.1
Msa1299480 AT2G04880.1 45.588 68 35 2 257 324 109 174 1.68e-12 70.5
Msa1299480 AT5G41570.1 43.299 97 54 1 220 316 59 154 5.39e-21 91.3
Msa1299480 AT2G30250.1 43.878 98 51 2 225 319 291 387 6.93e-21 95.5
Msa1299480 AT2G44745.1 44.186 86 47 1 231 316 117 201 1.90e-20 90.9
Msa1299480 AT3G01080.2 51.351 74 35 1 246 319 331 403 2.36e-20 94.7
Msa1299480 AT3G01080.1 51.351 74 35 1 246 319 293 365 2.53e-20 94.4
Msa1299480 AT2G47260.1 43.137 102 52 2 239 335 154 254 2.92e-20 92.8
Msa1299480 AT5G49520.1 46.835 79 41 1 243 321 205 282 3.70e-20 93.6
Msa1299480 AT5G46350.1 46.591 88 45 2 246 332 170 256 1.01e-19 91.3
Msa1299480 AT4G18170.1 43.878 98 48 3 222 319 141 231 1.31e-19 90.5
Msa1299480 AT1G64000.1 52.113 71 33 1 246 316 101 170 3.64e-19 86.3
Msa1299480 AT5G28650.1 62.712 59 22 0 264 322 267 325 5.55e-19 89.0
Msa1299480 AT5G13080.1 47.945 73 37 1 246 318 54 125 8.70e-19 84.0
Msa1299480 AT5G64810.1 45.000 80 43 1 237 316 88 166 1.22e-18 84.7
Msa1299480 AT1G69310.4 42.574 101 51 2 216 316 110 203 1.32e-18 87.0
Msa1299480 AT1G69310.2 42.574 101 51 2 216 316 110 203 1.32e-18 87.0
Msa1299480 AT1G69310.1 42.574 101 51 2 216 316 110 203 1.32e-18 87.0
Msa1299480 AT1G55600.1 44.872 78 42 1 242 319 290 366 1.48e-18 89.4
Msa1299480 AT4G24240.1 52.778 72 32 1 254 325 278 347 1.50e-18 88.2
Msa1299480 AT3G04670.1 59.322 59 24 0 264 322 267 325 1.94e-18 87.4
Msa1299480 AT2G23320.1 59.322 59 24 0 260 318 241 299 2.80e-18 86.7
Msa1299480 AT1G29280.1 47.297 74 39 0 250 323 65 138 5.37e-18 84.7
Msa1299480 AT2G46130.1 51.351 74 35 1 243 316 14 86 6.54e-18 80.1
Msa1299480 AT3G62340.1 48.193 83 42 1 238 320 97 178 8.87e-18 84.3
Msa1299480 AT4G39410.1 44.737 76 41 1 242 317 206 280 1.07e-17 84.7
Msa1299480 AT2G30590.1 46.988 83 36 1 242 316 288 370 2.55e-17 84.7
Msa1299480 AT2G37260.2 56.923 65 27 1 257 321 265 328 3.24e-17 84.0
Msa1299480 AT2G37260.2 43.434 99 53 3 260 358 84 179 2.65e-16 81.3
Msa1299480 AT2G37260.3 56.923 65 27 1 257 321 267 330 3.34e-17 84.0
Msa1299480 AT2G37260.3 43.434 99 53 3 260 358 86 181 2.88e-16 81.3
Msa1299480 AT2G37260.1 56.923 65 27 1 257 321 347 410 6.81e-17 84.0
Msa1299480 AT2G37260.1 43.434 99 53 3 260 358 166 261 6.52e-16 80.9
Msa1299480 AT3G01970.1 47.297 74 38 1 245 318 51 123 9.89e-17 78.2
Msa1299480 AT4G31550.1 35.088 171 81 7 169 316 140 303 2.20e-16 81.3
Msa1299480 AT4G31550.2 46.154 78 35 2 239 316 232 302 2.97e-16 80.9
Msa1299480 AT2G24570.1 39.806 103 51 3 239 341 230 321 4.39e-16 80.1
Msa1299480 AT4G23550.1 44.156 77 43 0 258 334 139 215 2.75e-15 77.8
Msa1299480 AT1G30650.1 49.254 67 34 0 260 326 218 284 3.22e-15 78.6
Msa1299480 AT3G58710.2 52.308 65 31 0 259 323 70 134 4.23e-15 76.3
Msa1299480 AT3G58710.1 52.308 65 31 0 259 323 71 135 4.29e-15 76.3
Msa1299480 AT4G01250.1 46.479 71 38 0 259 329 128 198 4.93e-15 76.6
Msa1299480 AT2G34830.1 49.254 67 34 0 260 326 216 282 8.84e-15 77.4
Msa1299480 AT2G34830.2 49.254 67 34 0 260 326 225 291 1.08e-14 77.0
Msa1299480 AT4G31800.3 67.500 40 13 0 257 296 174 213 1.37e-14 74.3
Msa1299480 AT5G52830.1 48.571 70 36 0 260 329 166 235 2.77e-14 75.1
Msa1299480 AT2G21900.1 45.161 62 33 1 258 319 108 168 8.10e-14 71.2
Msa1299480 AT1G69310.3 39.604 101 50 3 216 316 110 199 1.02e-13 72.4
Msa1299480 AT2G46130.2 47.297 74 34 2 243 316 14 82 5.27e-13 65.9
Msa1299480 AT5G43290.1 51.724 58 27 1 259 316 114 170 5.34e-13 70.1
Msa1299480 AT5G24110.1 46.575 73 36 2 244 314 99 170 1.77e-12 68.9
Msa1299480 AT5G45050.4 35.780 109 68 1 211 319 995 1101 7.77e-12 69.3
Msa1299480 AT5G45050.1 35.780 109 68 1 211 319 1134 1240 7.86e-12 69.3
Msa1299480 AT5G45050.2 35.780 109 68 1 211 319 1106 1212 8.02e-12 69.3

Find 116 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTGGACTTGGAATATT+TGG 0.129902 8_3:-60689369 None:intergenic
CCATATATGGAGTGCAATTC+TGG 0.170613 8_3:+60686750 Msa1299480:exon
GCAGCACTTTCTTCACTTAT+TGG 0.177197 8_3:+60690897 Msa1299480:CDS
CAATGCATGGGATTTGATTC+AGG 0.243163 8_3:-60690633 None:intergenic
ATAAATAATCACCAATTAAT+TGG 0.256352 8_3:-60691183 None:intergenic
TCATCAAGTTCTAAAGTAAA+TGG 0.266329 8_3:+60691020 Msa1299480:CDS
CCAGAATTGCACTCCATATA+TGG 0.273439 8_3:-60686750 None:intergenic
GGAAATGCAATTTAACAATA+TGG 0.281542 8_3:+60689089 Msa1299480:CDS
ATTCTGCATTTATTTCTTCA+TGG 0.288137 8_3:-60689158 None:intergenic
TTGTTCCTATTATTACTATA+TGG 0.291383 8_3:-60690693 None:intergenic
GAAATGGGCTGAGATGTTTC+AGG 0.315609 8_3:+60690977 Msa1299480:CDS
CATTTCCAGTGCTCGGTATT+CGG 0.345477 8_3:-60689073 None:intergenic
CAAACTCTAGCTTTCTTTGC+AGG 0.346131 8_3:-60689504 None:intergenic
ACAACTTCATCATCCTTTGT+TGG 0.350623 8_3:-60689408 None:intergenic
ATCAACCATATAGTAATAAT+AGG 0.373148 8_3:+60690688 Msa1299480:CDS
TGAGACAACAAAAGCTCAAA+TGG 0.387526 8_3:+60688996 Msa1299480:CDS
GCTAAAGCTGATTGAAAAGT+TGG 0.388661 8_3:-60690873 None:intergenic
CAAACCAACAACAATCTTCA+TGG 0.391184 8_3:+60690393 Msa1299480:CDS
CTTATTGGAAACACTAATCA+AGG 0.409882 8_3:+60690912 Msa1299480:CDS
TAATGATGAAGAATTCAATA+AGG 0.410747 8_3:+60689278 Msa1299480:CDS
CCATTCTGTGTATTGTTCAC+TGG 0.411705 8_3:-60691074 None:intergenic
GGATGTCAATGGAGGAAGTA+TGG 0.418183 8_3:+60689837 Msa1299480:CDS
CATCTGGTAGATAAAAGTTT+AGG 0.422150 8_3:-60690416 None:intergenic
AACCTAAGCACTTTAAACTT+TGG 0.427632 8_3:+60690720 Msa1299480:CDS
GGAAGAGTTGTCACTTGGAT+TGG 0.428474 8_3:+60689299 Msa1299480:CDS
GATGATGTTGAAGAATTTGA+TGG 0.429432 8_3:-60690528 None:intergenic
TTGTTGTTGGTTTGTGTTGA+GGG 0.435206 8_3:-60690384 None:intergenic
AAGAAGGGTATCTTGGTAGT+TGG 0.437752 8_3:-60690590 None:intergenic
ATTTGAGTCAGAAAATGAAA+TGG 0.439076 8_3:+60690961 Msa1299480:CDS
GTCTTATTGAGTGTCTTGCT+TGG 0.445610 8_3:-60689444 None:intergenic
TTTGAGTAGTAGCATAATTG+AGG 0.451637 8_3:-60690665 None:intergenic
CATATATGGAGTGCAATTCT+GGG 0.463692 8_3:+60686751 Msa1299480:exon
TTGGGCGAGGATATTGTGCT+TGG 0.464830 8_3:-60688723 None:intergenic
ATCATGTCCAGTTAGAAAAC+AGG 0.466304 8_3:+60689920 Msa1299480:CDS
GCCGCATCGATGCTATTATC+AGG 0.467031 8_3:+60690333 Msa1299480:CDS
CGATAGTAAGCTCGAGGGCA+AGG 0.467132 8_3:-60689882 None:intergenic
ATGATAGTGCAGGGTTGGAT+AGG 0.467366 8_3:-60690461 None:intergenic
AGAGTGGAAGAAGGGTATCT+TGG 0.467928 8_3:-60690597 None:intergenic
GATCTTTCAGTATTAGCAAT+GGG 0.469342 8_3:-60688687 None:intergenic
TTTGAGTCAGAAAATGAAAT+GGG 0.477793 8_3:+60690962 Msa1299480:CDS
GATCTTGTTTCCCTCAGCCT+TGG 0.480636 8_3:+60689183 Msa1299480:CDS
TTATTGAGTGTCTTGCTTGG+TGG 0.496292 8_3:-60689441 None:intergenic
TTCTCAAAACAGATGAATGA+TGG 0.497069 8_3:+60689816 Msa1299480:intron
AAATTTGAAACATCAAAATC+AGG 0.497604 8_3:+60689327 Msa1299480:CDS
TACCAAAGTTTAAAGTGCTT+AGG 0.497709 8_3:-60690722 None:intergenic
TAAATTGCATTTCCAGTGCT+CGG 0.498132 8_3:-60689080 None:intergenic
TCAGAACTATTCACTGGACT+TGG 0.498507 8_3:-60689378 None:intergenic
CTAAAGCTAAGAGTGGAAGA+AGG 0.503500 8_3:-60690606 None:intergenic
GTGAGATCAAGAGTGATAGT+TGG 0.505210 8_3:-60690498 None:intergenic
CGATGCGGCCGCAGAAGTTG+TGG 0.505511 8_3:-60690319 None:intergenic
TTCAAGTTTCTTGAACAAAA+CGG 0.507107 8_3:+60691049 Msa1299480:CDS
AGTTCTAAAGTAAATGGTTG+TGG 0.510261 8_3:+60691026 Msa1299480:CDS
TTTACTTTAGAACTTGATGA+AGG 0.512151 8_3:-60691017 None:intergenic
TAGGCCATGAAGATTGTTGT+TGG 0.513416 8_3:-60690397 None:intergenic
GAGTGCAATTCTGGGAGATC+TGG 0.518269 8_3:+60686759 Msa1299480:CDS
TTGAGATGATAGTGCAGGGT+TGG 0.519761 8_3:-60690466 None:intergenic
AATAAGGAAGAGTTGTCACT+TGG 0.522430 8_3:+60689294 Msa1299480:CDS
CTGAATCAAATCCCATGCAT+TGG 0.522577 8_3:+60690634 Msa1299480:CDS
GCCATGGCTGTTGCTGAAAG+TGG 0.522889 8_3:-60690294 None:intergenic
GGTTCATCAACTTCCAACTC+TGG 0.523321 8_3:+60690354 Msa1299480:CDS
TGAGGGGATTGAACCAGAGT+TGG 0.523996 8_3:-60690367 None:intergenic
AAAAGTGCTTCTGCATCTCC+TGG 0.524615 8_3:+60691140 Msa1299480:CDS
CGCAGAAGTTGTGGAAGCCA+TGG 0.524957 8_3:-60690310 None:intergenic
AAGAGAAGTGAGCATAGTAC+TGG 0.527731 8_3:+60686810 Msa1299480:CDS
GGTGCAGAAAATGGCAAAGA+AGG 0.529278 8_3:-60691116 None:intergenic
CTTGAATTGAATCTAACAAA+GGG 0.532209 8_3:-60690552 None:intergenic
TAGGAACTCTTCCAAGGCTG+AGG 0.532985 8_3:-60689194 None:intergenic
ACAACTTCAGAACTATTCAC+TGG 0.533241 8_3:-60689384 None:intergenic
TCCACTTTCAGCAACAGCCA+TGG 0.540367 8_3:+60690293 Msa1299480:CDS
TCAAACATTTCACAACATGT+AGG 0.542220 8_3:+60690801 Msa1299480:CDS
TTCTGAAGTTGTTCCAACAA+AGG 0.546847 8_3:+60689395 Msa1299480:CDS
GGGAATCAAAATCAAAGTGC+AGG 0.547602 8_3:+60690933 Msa1299480:CDS
AACAAAGGATGATGAAGTTG+TGG 0.549021 8_3:+60689410 Msa1299480:CDS
ATGATGAAGTTGTGGAGACT+TGG 0.550945 8_3:+60689418 Msa1299480:CDS
GAGACAACAAAAGCTCAAAT+GGG 0.551564 8_3:+60688997 Msa1299480:CDS
CCAGTGAACAATACACAGAA+TGG 0.554001 8_3:+60691074 Msa1299480:CDS
ACTGAAAGATCAATTGAGGC+TGG 0.554571 8_3:+60688699 Msa1299480:CDS
ATTGTTGTTGGTTTGTGTTG+AGG 0.555298 8_3:-60690385 None:intergenic
AAATCAGGTAGCACAACTGA+AGG 0.555466 8_3:+60689342 Msa1299480:CDS
TGATCTTTCAGTATTAGCAA+TGG 0.556800 8_3:-60688688 None:intergenic
TGTTGTTGGTTTGTGTTGAG+GGG 0.559624 8_3:-60690383 None:intergenic
GAGGAAGCTATTCCAATGCA+TGG 0.564369 8_3:-60690646 None:intergenic
AGATGAATGATGGATGTCAA+TGG 0.566197 8_3:+60689826 Msa1299480:intron
AGGAAGCTATTCCAATGCAT+GGG 0.575316 8_3:-60690645 None:intergenic
TGGCTGTTGCTGAAAGTGGA+AGG 0.576476 8_3:-60690290 None:intergenic
AATGACCGAATACCGAGCAC+TGG 0.578776 8_3:+60689068 Msa1299480:CDS
AGGAGAACTAAAGCTAAGAG+TGG 0.580510 8_3:-60690613 None:intergenic
TGATGGAGATAGTGAACTCA+AGG 0.581059 8_3:+60686782 Msa1299480:CDS
TAAAGCTAAGAGTGGAAGAA+GGG 0.581456 8_3:-60690605 None:intergenic
ATGATGTTGAAGAATTTGAT+GGG 0.583175 8_3:-60690527 None:intergenic
TTGCTGAAAGTGGAAGGCTG+TGG 0.584244 8_3:-60690284 None:intergenic
TGTTACTAGGAACTCTTCCA+AGG 0.584869 8_3:-60689200 None:intergenic
GATAGTAAGCTCGAGGGCAA+GGG 0.589028 8_3:-60689881 None:intergenic
TAATACTGAAAGATCAATTG+AGG 0.589489 8_3:+60688695 Msa1299480:CDS
AACAAAAGCTCAAATGGGTG+AGG 0.591231 8_3:+60689002 Msa1299480:CDS
GAATGTTGAGATGATAGTGC+AGG 0.594784 8_3:-60690471 None:intergenic
GCTTGAATTGAATCTAACAA+AGG 0.596663 8_3:-60690553 None:intergenic
AGGAACTCTTCCAAGGCTGA+GGG 0.600114 8_3:-60689193 None:intergenic
TCAGGTACAAAGATGTGTTG+AGG 0.608124 8_3:+60690221 Msa1299480:intron
CATGGCTTCCACAACTTCTG+CGG 0.616867 8_3:+60690311 Msa1299480:CDS
TAGAGAAGTATTTACCGTTG+GGG 0.623579 8_3:-60689547 None:intergenic
AGGTGAGAAAAGAAAATCAA+CGG 0.624151 8_3:+60689022 Msa1299480:CDS
TTCTAATCACAACATACGAA+GGG 0.629312 8_3:+60690253 Msa1299480:CDS
CTTTGGTAGACAAAATACAA+TGG 0.632926 8_3:+60690737 Msa1299480:CDS
GTGCAACGATAGTAAGCTCG+AGG 0.633302 8_3:-60689888 None:intergenic
TTATTGGAAACACTAATCAA+GGG 0.641347 8_3:+60690913 Msa1299480:CDS
ATTCTAATCACAACATACGA+AGG 0.641504 8_3:+60690252 Msa1299480:CDS
AATCAGGTAGCACAACTGAA+GGG 0.644837 8_3:+60689343 Msa1299480:CDS
AGCAAGATGTGACACCCCAA+CGG 0.667652 8_3:+60689533 Msa1299480:CDS
TTGTCACTATTATCACCACC+AGG 0.684962 8_3:-60691158 None:intergenic
TGCAACGATAGTAAGCTCGA+GGG 0.697067 8_3:-60689887 None:intergenic
AGTGCTTCTGCATCTCCTGG+TGG 0.699273 8_3:+60691143 Msa1299480:CDS
ACCTGATAATAGCATCGATG+CGG 0.704481 8_3:-60690334 None:intergenic
TGAATGATGGATGTCAATGG+AGG 0.716593 8_3:+60689829 Msa1299480:CDS
AATGTTGAGATGATAGTGCA+GGG 0.717220 8_3:-60690470 None:intergenic
AATTCTGGGAGATCTGGTGA+TGG 0.720675 8_3:+60686765 Msa1299480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATTATATATAAAT+AGG + chr8_3:60687923-60687942 Msa1299480:intron 0.0%
!! AAATATATTATATATAAATA+GGG + chr8_3:60687924-60687943 Msa1299480:intron 0.0%
!! ATTGATATAATTAAACAAAA+AGG - chr8_3:60687087-60687106 None:intergenic 10.0%
!! TTGTTTAATTATATCAATAT+TGG + chr8_3:60687089-60687108 Msa1299480:intron 10.0%
!!! TGAATTATGATTTTTTTTTA+AGG - chr8_3:60687262-60687281 None:intergenic 10.0%
!! TTATTTAGTATAAACAATTT+AGG - chr8_3:60687643-60687662 None:intergenic 10.0%
!!! ATAAGTAGATTATTTTTTAT+TGG - chr8_3:60687868-60687887 None:intergenic 10.0%
!! AATCTACTTATATATAAAAA+AGG + chr8_3:60687877-60687896 Msa1299480:intron 10.0%
!! ACATTAAAAAAAATAAACTT+GGG - chr8_3:60688527-60688546 None:intergenic 10.0%
!! TACATTAAAAAAAATAAACT+TGG - chr8_3:60688528-60688547 None:intergenic 10.0%
!!! AGTTTATTTTTTTTAATGTA+AGG + chr8_3:60688528-60688547 Msa1299480:intron 10.0%
!!! ATATTGAGTTTAATTTTATA+TGG + chr8_3:60688860-60688879 Msa1299480:intron 10.0%
!! TTCTAAATTATTCATTTATT+AGG + chr8_3:60690053-60690072 Msa1299480:intron 10.0%
!! CAAAATCATTTATAAAAGTT+TGG - chr8_3:60687043-60687062 None:intergenic 15.0%
!!! TTAATTTTGTTTTATATCAC+TGG + chr8_3:60687606-60687625 Msa1299480:intron 15.0%
!!! ATTTGTGGTATATATTTTTA+TGG - chr8_3:60687679-60687698 None:intergenic 15.0%
!!! GATGATTTTTTTTTTTTGAA+TGG + chr8_3:60687899-60687918 Msa1299480:intron 15.0%
!! ACAAATTATATCTAAAAACA+TGG + chr8_3:60688321-60688340 Msa1299480:intron 15.0%
!! ATTAAAAAAAATAAACTTGG+GGG - chr8_3:60688525-60688544 None:intergenic 15.0%
!! CATTAAAAAAAATAAACTTG+GGG - chr8_3:60688526-60688545 None:intergenic 15.0%
!!! ATTTTTCACTTTATTTATCA+TGG - chr8_3:60688583-60688602 None:intergenic 15.0%
!! GATAAATAAAGTGAAAAATA+AGG + chr8_3:60688584-60688603 Msa1299480:intron 15.0%
!!! AAATTAACCTTATCATTTTT+GGG - chr8_3:60688744-60688763 None:intergenic 15.0%
!!! AAAATTAACCTTATCATTTT+TGG - chr8_3:60688745-60688764 None:intergenic 15.0%
!!! TTTTTCTCAATTTCCATATA+TGG + chr8_3:60686737-60686756 Msa1299480:exon 20.0%
!! TGTGATTTAAAAGCTAAAAA+TGG - chr8_3:60686922-60686941 None:intergenic 20.0%
!! TTTCTTTCTCTCTATATATA+TGG + chr8_3:60686955-60686974 Msa1299480:intron 20.0%
!!! AGATTTGATAGTCAAAATTA+AGG + chr8_3:60687009-60687028 Msa1299480:intron 20.0%
!!! GATTTGATAGTCAAAATTAA+GGG + chr8_3:60687010-60687029 Msa1299480:intron 20.0%
!!! GGATGATTTTTTTTTTTGAA+AGG - chr8_3:60687241-60687260 None:intergenic 20.0%
!! AATTATCATTGTAATTAACG+TGG + chr8_3:60687309-60687328 Msa1299480:intron 20.0%
!! ATTATCATTGTAATTAACGT+GGG + chr8_3:60687310-60687329 Msa1299480:intron 20.0%
!!! TTTTGGATAATAAAGGATAA+GGG - chr8_3:60687360-60687379 None:intergenic 20.0%
!!! ATTTTGGATAATAAAGGATA+AGG - chr8_3:60687361-60687380 None:intergenic 20.0%
!!! AAGTTGATTTTGGATAATAA+AGG - chr8_3:60687367-60687386 None:intergenic 20.0%
!!! AGACATTTTTAACAAGTTTA+AGG - chr8_3:60687784-60687803 None:intergenic 20.0%
!!! GGTGTATTTTTATTTTCTTT+TGG - chr8_3:60687971-60687990 None:intergenic 20.0%
!! ATTAAATTGAAAATAGACGT+CGG + chr8_3:60688096-60688115 Msa1299480:intron 20.0%
!! TCATGAAATGTGTATATTAA+TGG - chr8_3:60688271-60688290 None:intergenic 20.0%
!! TAATTGACCAAATATGAATA+GGG + chr8_3:60688376-60688395 Msa1299480:intron 20.0%
!! TTTCTAAATGACATAAGAAA+GGG - chr8_3:60688500-60688519 None:intergenic 20.0%
!! ATTTCTAAATGACATAAGAA+AGG - chr8_3:60688501-60688520 None:intergenic 20.0%
!!! TTTTTTTAATGTAAGGAACA+AGG + chr8_3:60688535-60688554 Msa1299480:intron 20.0%
!!! TGAGTTTAATTTTATATGGA+CGG + chr8_3:60688864-60688883 Msa1299480:intron 20.0%
!!! TTTTTTGGAATATTGTTACT+AGG - chr8_3:60689216-60689235 None:intergenic 20.0%
!! TAATGATGAAGAATTCAATA+AGG + chr8_3:60689278-60689297 Msa1299480:CDS 20.0%
!!! AAATTTGAAACATCAAAATC+AGG + chr8_3:60689327-60689346 Msa1299480:CDS 20.0%
!!! AAGTTTTTCTCTTAATCTAT+CGG + chr8_3:60689696-60689715 Msa1299480:intron 20.0%
!! ATCAACCATATAGTAATAAT+AGG + chr8_3:60690688-60690707 Msa1299480:CDS 20.0%
!! TTGTTCCTATTATTACTATA+TGG - chr8_3:60690696-60690715 None:intergenic 20.0%
! TGAAAGTCATCATCAAAAAA+AGG + chr8_3:60686842-60686861 Msa1299480:CDS 25.0%
!! ATGGATCTATATGTTTGTTT+TGG + chr8_3:60686974-60686993 Msa1299480:intron 25.0%
! TATCTACAAGTCTTAAACAA+AGG + chr8_3:60687119-60687138 Msa1299480:intron 25.0%
! AAAGGTGATTAATTTCTTCA+AGG - chr8_3:60687223-60687242 None:intergenic 25.0%
!! TTGACTTCGATTCTTAATTT+TGG + chr8_3:60687560-60687579 Msa1299480:intron 25.0%
! CAATAAATACTGAAGATTTG+TGG - chr8_3:60687694-60687713 None:intergenic 25.0%
!!! ATTTTTTTAGGGGTTTGTTT+GGG - chr8_3:60687754-60687773 None:intergenic 25.0%
!!! AATTTTTTTAGGGGTTTGTT+TGG - chr8_3:60687755-60687774 None:intergenic 25.0%
!!! AAGGAGGTTGAATTTTTTTA+GGG - chr8_3:60687765-60687784 None:intergenic 25.0%
!!! TAAGGAGGTTGAATTTTTTT+AGG - chr8_3:60687766-60687785 None:intergenic 25.0%
!! CATTTTTAACAAGTTTAAGG+AGG - chr8_3:60687781-60687800 None:intergenic 25.0%
!!! TTTCTTTTGGTGTAAAACTT+GGG - chr8_3:60687958-60687977 None:intergenic 25.0%
!!! TTTTCTTTTGGTGTAAAACT+TGG - chr8_3:60687959-60687978 None:intergenic 25.0%
!!! ATGTTTGTTGATTTTTCCTT+GGG - chr8_3:60688000-60688019 None:intergenic 25.0%
! AAATTAAGAACATGCACAAT+TGG - chr8_3:60688187-60688206 None:intergenic 25.0%
!!! TGAAGATGTTATCATTTTTC+TGG + chr8_3:60688219-60688238 Msa1299480:intron 25.0%
!!! GATATAATTTGTTTTGTGTG+TGG - chr8_3:60688313-60688332 None:intergenic 25.0%
! AATTTAAACTTACATGTGCT+GGG - chr8_3:60688352-60688371 None:intergenic 25.0%
! TAATTTAAACTTACATGTGC+TGG - chr8_3:60688353-60688372 None:intergenic 25.0%
! GTAATTGACCAAATATGAAT+AGG + chr8_3:60688375-60688394 Msa1299480:intron 25.0%
!!! CTTTTTTCCCTATTCATATT+TGG - chr8_3:60688386-60688405 None:intergenic 25.0%
! AATAGGGAAAAAAGATTCAT+TGG + chr8_3:60688392-60688411 Msa1299480:intron 25.0%
!! TATATTTGCCTATGTTTTAC+AGG + chr8_3:60688659-60688678 Msa1299480:intron 25.0%
! TAATACTGAAAGATCAATTG+AGG + chr8_3:60688695-60688714 Msa1299480:CDS 25.0%
!!! GAGTTTAATTTTATATGGAC+GGG + chr8_3:60688865-60688884 Msa1299480:intron 25.0%
! ACATGAGTACTAATTGAAAT+TGG - chr8_3:60688936-60688955 None:intergenic 25.0%
! TGTTGCAATTACATGTATAT+AGG + chr8_3:60688960-60688979 Msa1299480:intron 25.0%
! GGAAATGCAATTTAACAATA+TGG + chr8_3:60689089-60689108 Msa1299480:CDS 25.0%
!! ATTCTGCATTTATTTCTTCA+TGG - chr8_3:60689161-60689180 None:intergenic 25.0%
!!! ACTTTCTCTTGATCATTTTT+TGG - chr8_3:60689231-60689250 None:intergenic 25.0%
! ATCGAATTTGGTATAAAATG+AGG - chr8_3:60689581-60689600 None:intergenic 25.0%
!!! GCTTCTCTATTTTAATCTAA+CGG - chr8_3:60689630-60689649 None:intergenic 25.0%
! AGAAATCAAATGTGAACAAA+TGG - chr8_3:60689800-60689819 None:intergenic 25.0%
! TATGGACAAAAAATTGCAAA+GGG + chr8_3:60689855-60689874 Msa1299480:CDS 25.0%
! ACCACATAATTATGAATTTC+AGG + chr8_3:60690203-60690222 Msa1299480:intron 25.0%
! ACCTGAAATTCATAATTATG+TGG - chr8_3:60690207-60690226 None:intergenic 25.0%
! ATGATGTTGAAGAATTTGAT+GGG - chr8_3:60690530-60690549 None:intergenic 25.0%
! CTTGAATTGAATCTAACAAA+GGG - chr8_3:60690555-60690574 None:intergenic 25.0%
!!! ATTGTTGTTTTTTTGCATGT+AGG - chr8_3:60690778-60690797 None:intergenic 25.0%
! TTATTGGAAACACTAATCAA+GGG + chr8_3:60690913-60690932 Msa1299480:CDS 25.0%
! ATTTGAGTCAGAAAATGAAA+TGG + chr8_3:60690961-60690980 Msa1299480:CDS 25.0%
! TTTGAGTCAGAAAATGAAAT+GGG + chr8_3:60690962-60690981 Msa1299480:CDS 25.0%
!!! TTTACTTTAGAACTTGATGA+AGG - chr8_3:60691020-60691039 None:intergenic 25.0%
!!! TCATCAAGTTCTAAAGTAAA+TGG + chr8_3:60691020-60691039 Msa1299480:CDS 25.0%
!! TTCAAGTTTCTTGAACAAAA+CGG + chr8_3:60691049-60691068 Msa1299480:CDS 25.0%
AAAAAAGGAGACTATTGTTG+AGG + chr8_3:60686857-60686876 Msa1299480:CDS 30.0%
!!! ACTTAGTAGCAAGTTGATTT+TGG - chr8_3:60687377-60687396 None:intergenic 30.0%
CACAAGAAATCCATATAGTT+AGG + chr8_3:60687476-60687495 Msa1299480:intron 30.0%
ATCTCTATGTCCTAACTATA+TGG - chr8_3:60687489-60687508 None:intergenic 30.0%
!!! AGGAGGTTGAATTTTTTTAG+GGG - chr8_3:60687764-60687783 None:intergenic 30.0%
!!! GATGTTTGTTGATTTTTCCT+TGG - chr8_3:60688001-60688020 None:intergenic 30.0%
TTCTGGCATACATACTATTA+AGG + chr8_3:60688236-60688255 Msa1299480:intron 30.0%
TCTGGCATACATACTATTAA+GGG + chr8_3:60688237-60688256 Msa1299480:intron 30.0%
ATACGTATAGTTCCTCATTA+AGG + chr8_3:60688427-60688446 Msa1299480:intron 30.0%
TTATGAACATGTCCTTAATG+AGG - chr8_3:60688442-60688461 None:intergenic 30.0%
TATCATGGATGCAAAACAAT+TGG - chr8_3:60688568-60688587 None:intergenic 30.0%
GATCTTTCAGTATTAGCAAT+GGG - chr8_3:60688690-60688709 None:intergenic 30.0%
TGATCTTTCAGTATTAGCAA+TGG - chr8_3:60688691-60688710 None:intergenic 30.0%
CAAGTAGAATCACTAAAAGT+CGG - chr8_3:60688824-60688843 None:intergenic 30.0%
AGGTGAGAAAAGAAAATCAA+CGG + chr8_3:60689022-60689041 Msa1299480:CDS 30.0%
!! ATAGAGAAGTATTTACCGTT+GGG - chr8_3:60689551-60689570 None:intergenic 30.0%
ATACCAAATTCGATGTTACA+TGG + chr8_3:60689587-60689606 Msa1299480:intron 30.0%
TTCTCAAAACAGATGAATGA+TGG + chr8_3:60689816-60689835 Msa1299480:intron 30.0%
GTATGGACAAAAAATTGCAA+AGG + chr8_3:60689854-60689873 Msa1299480:CDS 30.0%
! ATATGTACCTGTTTTCTAAC+TGG - chr8_3:60689930-60689949 None:intergenic 30.0%
! ATATCTCGTGTACATTTTCT+AGG - chr8_3:60690080-60690099 None:intergenic 30.0%
ATTCTAATCACAACATACGA+AGG + chr8_3:60690252-60690271 Msa1299480:CDS 30.0%
TTCTAATCACAACATACGAA+GGG + chr8_3:60690253-60690272 Msa1299480:CDS 30.0%
CATCTGGTAGATAAAAGTTT+AGG - chr8_3:60690419-60690438 None:intergenic 30.0%
! CTAAACTTTTATCTACCAGA+TGG + chr8_3:60690417-60690436 Msa1299480:CDS 30.0%
!! TGATTTGATTTTGAACCATC+TGG - chr8_3:60690435-60690454 None:intergenic 30.0%
GATGATGTTGAAGAATTTGA+TGG - chr8_3:60690531-60690550 None:intergenic 30.0%
GCTTGAATTGAATCTAACAA+AGG - chr8_3:60690556-60690575 None:intergenic 30.0%
TTTGAGTAGTAGCATAATTG+AGG - chr8_3:60690668-60690687 None:intergenic 30.0%
AACCTAAGCACTTTAAACTT+TGG + chr8_3:60690720-60690739 Msa1299480:CDS 30.0%
! TACCAAAGTTTAAAGTGCTT+AGG - chr8_3:60690725-60690744 None:intergenic 30.0%
CTTTGGTAGACAAAATACAA+TGG + chr8_3:60690737-60690756 Msa1299480:CDS 30.0%
!!! TGTTTTTTTGCATGTAGGTT+TGG - chr8_3:60690773-60690792 None:intergenic 30.0%
TCAAACATTTCACAACATGT+AGG + chr8_3:60690801-60690820 Msa1299480:CDS 30.0%
CTTATTGGAAACACTAATCA+AGG + chr8_3:60690912-60690931 Msa1299480:CDS 30.0%
!! AGTTCTAAAGTAAATGGTTG+TGG + chr8_3:60691026-60691045 Msa1299480:CDS 30.0%
CATATATGGAGTGCAATTCT+GGG + chr8_3:60686751-60686770 Msa1299480:exon 35.0%
GGATAATAAAGGATAAGGGA+AGG - chr8_3:60687356-60687375 None:intergenic 35.0%
AAAATACACCAAAACACCCA+AGG + chr8_3:60687981-60688000 Msa1299480:intron 35.0%
! TGATTTTTCCTTGGGTGTTT+TGG - chr8_3:60687992-60688011 None:intergenic 35.0%
GACATAAGAAAGGGAAAATG+AGG - chr8_3:60688491-60688510 None:intergenic 35.0%
TGAGACAACAAAAGCTCAAA+TGG + chr8_3:60688996-60689015 Msa1299480:CDS 35.0%
GAGACAACAAAAGCTCAAAT+GGG + chr8_3:60688997-60689016 Msa1299480:CDS 35.0%
TAAATTGCATTTCCAGTGCT+CGG - chr8_3:60689083-60689102 None:intergenic 35.0%
AATAAGGAAGAGTTGTCACT+TGG + chr8_3:60689294-60689313 Msa1299480:CDS 35.0%
TTCACTGGACTTGGAATATT+TGG - chr8_3:60689372-60689391 None:intergenic 35.0%
ACAACTTCAGAACTATTCAC+TGG - chr8_3:60689387-60689406 None:intergenic 35.0%
!! TTCTGAAGTTGTTCCAACAA+AGG + chr8_3:60689395-60689414 Msa1299480:CDS 35.0%
ACAACTTCATCATCCTTTGT+TGG - chr8_3:60689411-60689430 None:intergenic 35.0%
AACAAAGGATGATGAAGTTG+TGG + chr8_3:60689410-60689429 Msa1299480:CDS 35.0%
!! TAGAGAAGTATTTACCGTTG+GGG - chr8_3:60689550-60689569 None:intergenic 35.0%
!! GATAGAGAAGTATTTACCGT+TGG - chr8_3:60689552-60689571 None:intergenic 35.0%
TCTCTTAATCTATCGGTGTA+CGG + chr8_3:60689703-60689722 Msa1299480:intron 35.0%
!! AGATGAATGATGGATGTCAA+TGG + chr8_3:60689826-60689845 Msa1299480:intron 35.0%
! TGTTTTCTAACTGGACATGA+TGG - chr8_3:60689921-60689940 None:intergenic 35.0%
ATCATGTCCAGTTAGAAAAC+AGG + chr8_3:60689920-60689939 Msa1299480:CDS 35.0%
!! TTGTTGTTGGTTTGTGTTGA+GGG - chr8_3:60690387-60690406 None:intergenic 35.0%
!! ATTGTTGTTGGTTTGTGTTG+AGG - chr8_3:60690388-60690407 None:intergenic 35.0%
CAAACCAACAACAATCTTCA+TGG + chr8_3:60690393-60690412 Msa1299480:CDS 35.0%
! AATGTTGAGATGATAGTGCA+GGG - chr8_3:60690473-60690492 None:intergenic 35.0%
TAAAGCTAAGAGTGGAAGAA+GGG - chr8_3:60690608-60690627 None:intergenic 35.0%
GCTAAAGCTGATTGAAAAGT+TGG - chr8_3:60690876-60690895 None:intergenic 35.0%
CCAGAATTGCACTCCATATA+TGG - chr8_3:60686753-60686772 None:intergenic 40.0%
CCATATATGGAGTGCAATTC+TGG + chr8_3:60686750-60686769 Msa1299480:exon 40.0%
TGATGGAGATAGTGAACTCA+AGG + chr8_3:60686782-60686801 Msa1299480:CDS 40.0%
AAGAGAAGTGAGCATAGTAC+TGG + chr8_3:60686810-60686829 Msa1299480:CDS 40.0%
AGGAATTAACGACCTGATCA+TGG - chr8_3:60687336-60687355 None:intergenic 40.0%
AATTACCTTTCGTGCATGCA+AGG + chr8_3:60687441-60687460 Msa1299480:intron 40.0%
ACTGAAAGATCAATTGAGGC+TGG + chr8_3:60688699-60688718 Msa1299480:CDS 40.0%
ATCCTCGCCCAAAAATGATA+AGG + chr8_3:60688734-60688753 Msa1299480:CDS 40.0%
!! AACCTTATCATTTTTGGGCG+AGG - chr8_3:60688739-60688758 None:intergenic 40.0%
AACAAAAGCTCAAATGGGTG+AGG + chr8_3:60689002-60689021 Msa1299480:CDS 40.0%
TGTTACTAGGAACTCTTCCA+AGG - chr8_3:60689203-60689222 None:intergenic 40.0%
AAATCAGGTAGCACAACTGA+AGG + chr8_3:60689342-60689361 Msa1299480:CDS 40.0%
AATCAGGTAGCACAACTGAA+GGG + chr8_3:60689343-60689362 Msa1299480:CDS 40.0%
TCAGAACTATTCACTGGACT+TGG - chr8_3:60689381-60689400 None:intergenic 40.0%
ATGATGAAGTTGTGGAGACT+TGG + chr8_3:60689418-60689437 Msa1299480:CDS 40.0%
TTATTGAGTGTCTTGCTTGG+TGG - chr8_3:60689444-60689463 None:intergenic 40.0%
! GTCTTATTGAGTGTCTTGCT+TGG - chr8_3:60689447-60689466 None:intergenic 40.0%
!! CAAACTCTAGCTTTCTTTGC+AGG - chr8_3:60689507-60689526 None:intergenic 40.0%
GCACCATGTAACATCGAATT+TGG - chr8_3:60689593-60689612 None:intergenic 40.0%
!! TGAATGATGGATGTCAATGG+AGG + chr8_3:60689829-60689848 Msa1299480:CDS 40.0%
! CACGAGATATTTTGTGCTTG+AGG + chr8_3:60690090-60690109 Msa1299480:intron 40.0%
TCAGGTACAAAGATGTGTTG+AGG + chr8_3:60690221-60690240 Msa1299480:intron 40.0%
!! ACCTGATAATAGCATCGATG+CGG - chr8_3:60690337-60690356 None:intergenic 40.0%
!! TGTTGTTGGTTTGTGTTGAG+GGG - chr8_3:60690386-60690405 None:intergenic 40.0%
TAGGCCATGAAGATTGTTGT+TGG - chr8_3:60690400-60690419 None:intergenic 40.0%
! GAATGTTGAGATGATAGTGC+AGG - chr8_3:60690474-60690493 None:intergenic 40.0%
GTGAGATCAAGAGTGATAGT+TGG - chr8_3:60690501-60690520 None:intergenic 40.0%
!! AAGAAGGGTATCTTGGTAGT+TGG - chr8_3:60690593-60690612 None:intergenic 40.0%
CTAAAGCTAAGAGTGGAAGA+AGG - chr8_3:60690609-60690628 None:intergenic 40.0%
AGGAGAACTAAAGCTAAGAG+TGG - chr8_3:60690616-60690635 None:intergenic 40.0%
CAATGCATGGGATTTGATTC+AGG - chr8_3:60690636-60690655 None:intergenic 40.0%
CTGAATCAAATCCCATGCAT+TGG + chr8_3:60690634-60690653 Msa1299480:CDS 40.0%
AGGAAGCTATTCCAATGCAT+GGG - chr8_3:60690648-60690667 None:intergenic 40.0%
GCAGCACTTTCTTCACTTAT+TGG + chr8_3:60690897-60690916 Msa1299480:CDS 40.0%
GGGAATCAAAATCAAAGTGC+AGG + chr8_3:60690933-60690952 Msa1299480:CDS 40.0%
CCATTCTGTGTATTGTTCAC+TGG - chr8_3:60691077-60691096 None:intergenic 40.0%
CCAGTGAACAATACACAGAA+TGG + chr8_3:60691074-60691093 Msa1299480:CDS 40.0%
!! GCACTTTTAGGTGCAGAAAA+TGG - chr8_3:60691128-60691147 None:intergenic 40.0%
TTGTCACTATTATCACCACC+AGG - chr8_3:60691161-60691180 None:intergenic 40.0%
! AATTCTGGGAGATCTGGTGA+TGG + chr8_3:60686765-60686784 Msa1299480:CDS 45.0%
AATTAACGTGGGCCATGATC+AGG + chr8_3:60687321-60687340 Msa1299480:intron 45.0%
! TTAGGGGTTTGTTTGGGCTA+TGG - chr8_3:60687748-60687767 None:intergenic 45.0%
TTTGTGTGTGGCACATGCAT+AGG - chr8_3:60688301-60688320 None:intergenic 45.0%
AATGTAAGGAACAAGGAGCC+TGG + chr8_3:60688542-60688561 Msa1299480:intron 45.0%
TGGATGCAAAACAATTGGCC+AGG - chr8_3:60688563-60688582 None:intergenic 45.0%
GGGTGCTTCCTGTAAAACAT+AGG - chr8_3:60688670-60688689 None:intergenic 45.0%
CATTTCCAGTGCTCGGTATT+CGG - chr8_3:60689076-60689095 None:intergenic 45.0%
! GGAAGAGTTGTCACTTGGAT+TGG + chr8_3:60689299-60689318 Msa1299480:CDS 45.0%
GGATGTCAATGGAGGAAGTA+TGG + chr8_3:60689837-60689856 Msa1299480:CDS 45.0%
TGCAACGATAGTAAGCTCGA+GGG - chr8_3:60689890-60689909 None:intergenic 45.0%
GGTTCATCAACTTCCAACTC+TGG + chr8_3:60690354-60690373 Msa1299480:CDS 45.0%
! ATGATAGTGCAGGGTTGGAT+AGG - chr8_3:60690464-60690483 None:intergenic 45.0%
! TTGAGATGATAGTGCAGGGT+TGG - chr8_3:60690469-60690488 None:intergenic 45.0%
!! AGAGTGGAAGAAGGGTATCT+TGG - chr8_3:60690600-60690619 None:intergenic 45.0%
GAGGAAGCTATTCCAATGCA+TGG - chr8_3:60690649-60690668 None:intergenic 45.0%
!! GAAATGGGCTGAGATGTTTC+AGG + chr8_3:60690977-60690996 Msa1299480:CDS 45.0%
GGTGCAGAAAATGGCAAAGA+AGG - chr8_3:60691119-60691138 None:intergenic 45.0%
!!! GGAGATGCAGAAGCACTTTT+AGG - chr8_3:60691140-60691159 None:intergenic 45.0%
!! AAAAGTGCTTCTGCATCTCC+TGG + chr8_3:60691140-60691159 Msa1299480:CDS 45.0%
!! AATATATTATATATAAATAG+GGG + chr8_3:60687925-60687944 Msa1299480:intron 5.0%
!!! TATTTTCAATTTAATATTTA+CGG - chr8_3:60688091-60688110 None:intergenic 5.0%
!! AATTCAATAAAAATTAATAA+CGG - chr8_3:60688776-60688795 None:intergenic 5.0%
!!! ATTAATTTTTATTGAATTAT+TGG + chr8_3:60688778-60688797 Msa1299480:intron 5.0%
! GAGTGCAATTCTGGGAGATC+TGG + chr8_3:60686759-60686778 Msa1299480:CDS 50.0%
GTTTGCCTTGCATGCACGAA+AGG - chr8_3:60687449-60687468 None:intergenic 50.0%
TTGGGCGAGGATATTGTGCT+TGG - chr8_3:60688726-60688745 None:intergenic 50.0%
AATGACCGAATACCGAGCAC+TGG + chr8_3:60689068-60689087 Msa1299480:CDS 50.0%
! GATCTTGTTTCCCTCAGCCT+TGG + chr8_3:60689183-60689202 Msa1299480:CDS 50.0%
AGGAACTCTTCCAAGGCTGA+GGG - chr8_3:60689196-60689215 None:intergenic 50.0%
TAGGAACTCTTCCAAGGCTG+AGG - chr8_3:60689197-60689216 None:intergenic 50.0%
AGCAAGATGTGACACCCCAA+CGG + chr8_3:60689533-60689552 Msa1299480:CDS 50.0%
GATAGTAAGCTCGAGGGCAA+GGG - chr8_3:60689884-60689903 None:intergenic 50.0%
GTGCAACGATAGTAAGCTCG+AGG - chr8_3:60689891-60689910 None:intergenic 50.0%
TTGCTGAAAGTGGAAGGCTG+TGG - chr8_3:60690287-60690306 None:intergenic 50.0%
TGGCTGTTGCTGAAAGTGGA+AGG - chr8_3:60690293-60690312 None:intergenic 50.0%
TCCACTTTCAGCAACAGCCA+TGG + chr8_3:60690293-60690312 Msa1299480:CDS 50.0%
CATGGCTTCCACAACTTCTG+CGG + chr8_3:60690311-60690330 Msa1299480:CDS 50.0%
! GCCGCATCGATGCTATTATC+AGG + chr8_3:60690333-60690352 Msa1299480:CDS 50.0%
TGAGGGGATTGAACCAGAGT+TGG - chr8_3:60690370-60690389 None:intergenic 50.0%
! GGGGTTTGTTTGGGCTATGG+AGG - chr8_3:60687745-60687764 None:intergenic 55.0%
CGATAGTAAGCTCGAGGGCA+AGG - chr8_3:60689885-60689904 None:intergenic 55.0%
GCCATGGCTGTTGCTGAAAG+TGG - chr8_3:60690297-60690316 None:intergenic 55.0%
CGCAGAAGTTGTGGAAGCCA+TGG - chr8_3:60690313-60690332 None:intergenic 55.0%
AGTGCTTCTGCATCTCCTGG+TGG + chr8_3:60691143-60691162 Msa1299480:CDS 55.0%
CGATGCGGCCGCAGAAGTTG+TGG - chr8_3:60690322-60690341 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 60686706 60691190 60686706 ID=Msa1299480;Name=Msa1299480
chr8_3 mRNA 60686706 60691190 60686706 ID=Msa1299480-mRNA-1;Parent=Msa1299480;Name=Msa1299480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|0.6|1|1|1|5|0|616
chr8_3 exon 60686706 60686878 60686706 ID=Msa1299480-mRNA-1:exon:17748;Parent=Msa1299480-mRNA-1
chr8_3 exon 60688681 60688755 60688681 ID=Msa1299480-mRNA-1:exon:17749;Parent=Msa1299480-mRNA-1
chr8_3 exon 60688982 60689554 60688982 ID=Msa1299480-mRNA-1:exon:17750;Parent=Msa1299480-mRNA-1
chr8_3 exon 60689828 60689941 60689828 ID=Msa1299480-mRNA-1:exon:17751;Parent=Msa1299480-mRNA-1
chr8_3 exon 60690225 60691190 60690225 ID=Msa1299480-mRNA-1:exon:17752;Parent=Msa1299480-mRNA-1
chr8_3 five_prime_UTR 60686706 60686755 60686706 ID=Msa1299480-mRNA-1:five_prime_utr;Parent=Msa1299480-mRNA-1
chr8_3 CDS 60686756 60686878 60686756 ID=Msa1299480-mRNA-1:cds;Parent=Msa1299480-mRNA-1
chr8_3 CDS 60688681 60688755 60688681 ID=Msa1299480-mRNA-1:cds;Parent=Msa1299480-mRNA-1
chr8_3 CDS 60688982 60689554 60688982 ID=Msa1299480-mRNA-1:cds;Parent=Msa1299480-mRNA-1
chr8_3 CDS 60689828 60689941 60689828 ID=Msa1299480-mRNA-1:cds;Parent=Msa1299480-mRNA-1
chr8_3 CDS 60690225 60691190 60690225 ID=Msa1299480-mRNA-1:cds;Parent=Msa1299480-mRNA-1
Gene Sequence

>Msa1299480

ATGGAGTGCAATTCTGGGAGATCTGGTGATGGAGATAGTGAACTCAAGGAAGATAAGAGAAGTGAGCATAGTACTGGTGATGATCATGAAAGTCATCATCAAAAAAAGGAGACTATTGTTGAGGAAGCACCCATTGCTAATACTGAAAGATCAATTGAGGCTGGTCCAAGCACAATATCCTCGCCCAAAAATGATAAGGTTGATGATCAGCTTGAGACAACAAAAGCTCAAATGGGTGAGGTGAGAAAAGAAAATCAACGGTTAAAGATGTGCTTGAACAAAATAATGACCGAATACCGAGCACTGGAAATGCAATTTAACAATATGGTTAAGCAAGAAACAAAAAAGAGCAATGTTGATCACAATGATAATAACCATGAAGAAATAAATGCAGAATCAGATCTTGTTTCCCTCAGCCTTGGAAGAGTTCCTAGTAACAATATTCCAAAAAATGATCAAGAGAAAGTTAACAAAGTGTCTAAACTAGCATTGAATAATGATGAAGAATTCAATAAGGAAGAGTTGTCACTTGGATTGGAGTGTAAATTTGAAACATCAAAATCAGGTAGCACAACTGAAGGGTTACCAAATATTCCAAGTCCAGTGAATAGTTCTGAAGTTGTTCCAACAAAGGATGATGAAGTTGTGGAGACTTGGCCACCAAGCAAGACACTCAATAAGACAATGAGAGACGCTGAAGATGAAGTTGCTCAACAAACTCCTGCAAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACCCCAACGATGAATGATGGATGTCAATGGAGGAAGTATGGACAAAAAATTGCAAAGGGAAACCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGTCCAGTTAGAAAACAGGTACAAAGATGTGTTGAGGACATGTCTATTCTAATCACAACATACGAAGGGACACACAACCACAGCCTTCCACTTTCAGCAACAGCCATGGCTTCCACAACTTCTGCGGCCGCATCGATGCTATTATCAGGTTCATCAACTTCCAACTCTGGTTCAATCCCCTCAACACAAACCAACAACAATCTTCATGGCCTAAACTTTTATCTACCAGATGGTTCAAAATCAAATCAATTATACCTATCCAACCCTGCACTATCATCTCAACATTCACATCCAACTATCACTCTTGATCTCACTTCAAACCCATCAAATTCTTCAACATCATCGCCCTTTGTTAGATTCAATTCAAGCTACAACAACAATAACCAACTACCAAGATACCCTTCTTCCACTCTTAGCTTTAGTTCTCCTGAATCAAATCCCATGCATTGGAATAGCTTCCTCAATTATGCTACTACTCAAAATCAACCATATAGTAATAATAGGAACAATAATAACCTAAGCACTTTAAACTTTGGTAGACAAAATACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAACAATAGTTCAAACATTTCACAACATGTAGGTTTACAAGATAGTACTATATCTGCAGCAACAAAAGCTATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTTCTTCACTTATTGGAAACACTAATCAAGGGAATCAAAATCAAAGTGCAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCAGGTTTCTTCTACTTCATTGCCTTCATCAAGTTCTAAAGTAAATGGTTGTGGTTCAAGTTTCTTGAACAAAACGGCACCAGTGAACAATACACAGAATGGAAGTTTGATGTTGTTATCTCCTTCTTTGCCATTTTCTGCACCTAAAAGTGCTTCTGCATCTCCTGGTGGTGATAATAGTGACAATACCAATTAA
Protein sequence

>Msa1299480

MECNSGRSGDGDSELKEDKRSEHSTGDDHESHHQKKETIVEEAPIANTERSIEAGPSTISSPKNDKVDDQLETTKAQMGEVRKENQRLKMCLNKIMTEYRALEMQFNNMVKQETKKSNVDHNDNNHEEINAESDLVSLSLGRVPSNNIPKNDQEKVNKVSKLALNNDEEFNKEELSLGLECKFETSKSGSTTEGLPNIPSPVNSSEVVPTKDDEVVETWPPSKTLNKTMRDAEDEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVEDMSILITTYEGTHNHSLPLSATAMASTTSAAASMLLSGSSTSNSGSIPSTQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTSNPSNSSTSSPFVRFNSSYNNNNQLPRYPSSTLSFSSPESNPMHWNSFLNYATTQNQPYSNNRNNNNLSTLNFGRQNTMESIYQTYMQKNNNSSNISQHVGLQDSTISAATKAITADPTFQSALAAALSSLIGNTNQGNQNQSAGENLSQKMKWAEMFQVSSTSLPSSSSKVNGCGSSFLNKTAPVNNTQNGSLMLLSPSLPFSAPKSASASPGGDNSDNTN*