Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560870 | XP_013457252.1 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 1.72e-161 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560870 | sp|C7AE94|FAOMT_VITVI | 67.544 | 228 | 73 | 1 | 3 | 229 | 7 | 234 | 4.50e-107 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560870 | A0A072UQF3 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 8.19e-162 | 456 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032090 | Msa0560870 | 0.803222 | 3.863335e-49 | -8.615850e-47 |
| Msa0032430 | Msa0560870 | 0.805944 | 1.045096e-49 | -8.615850e-47 |
| Msa0079380 | Msa0560870 | 0.800447 | 1.435262e-48 | -8.615850e-47 |
| Msa0116850 | Msa0560870 | 0.807636 | 4.588156e-50 | -8.615850e-47 |
| Msa0172070 | Msa0560870 | 0.810192 | 1.302365e-50 | -8.615850e-47 |
| Msa0211150 | Msa0560870 | 0.805042 | 1.615780e-49 | -8.615850e-47 |
| Msa0229990 | Msa0560870 | 0.823266 | 1.519690e-53 | -8.615850e-47 |
| Msa0243480 | Msa0560870 | 0.808393 | 3.166958e-50 | -8.615850e-47 |
| Msa0321080 | Msa0560870 | 0.805351 | 1.392208e-49 | -8.615850e-47 |
| Msa0512750 | Msa0560870 | 0.805309 | 1.420892e-49 | -8.615850e-47 |
| Msa0560870 | Msa0571630 | 0.804308 | 2.299219e-49 | -8.615850e-47 |
| Msa0560870 | Msa0596800 | 0.823131 | 1.634003e-53 | -8.615850e-47 |
| Msa0560870 | Msa0602390 | 0.831350 | 1.754245e-55 | -8.615850e-47 |
| Msa0560870 | Msa0616160 | 0.833024 | 6.763009e-56 | -8.615850e-47 |
| Msa0560870 | Msa0641670 | 0.856931 | 2.303754e-62 | -8.615850e-47 |
| Msa0560870 | Msa0692950 | 0.800616 | 1.325417e-48 | -8.615850e-47 |
| Msa0560870 | Msa0945970 | 0.800165 | 1.638156e-48 | -8.615850e-47 |
| Msa0560870 | Msa1075650 | 0.800348 | 1.503189e-48 | -8.615850e-47 |
| Msa0560870 | Msa1081980 | 0.810437 | 1.153359e-50 | -8.615850e-47 |
| Msa0560870 | Msa1280320 | 0.807584 | 4.706620e-50 | -8.615850e-47 |
| Msa0560870 | Msa1434140 | 0.810458 | 1.141132e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560870 | MtrunA17_Chr4g0051041 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 1.58e-165 | 456 |
| Msa0560870 | MtrunA17_Chr4g0053331 | 54.825 | 228 | 96 | 3 | 3 | 227 | 17 | 240 | 9.59e-84 | 249 |
| Msa0560870 | MtrunA17_Chr4g0044581 | 52.655 | 226 | 104 | 2 | 3 | 227 | 21 | 244 | 4.05e-82 | 245 |
| Msa0560870 | MtrunA17_Chr4g0053031 | 53.097 | 226 | 103 | 3 | 3 | 227 | 22 | 245 | 1.53e-81 | 244 |
| Msa0560870 | MtrunA17_Chr8g0344401 | 54.464 | 224 | 99 | 2 | 5 | 227 | 11 | 232 | 2.13e-80 | 240 |
| Msa0560870 | MtrunA17_Chr4g0053021 | 55.752 | 226 | 97 | 2 | 3 | 227 | 20 | 243 | 2.42e-80 | 240 |
| Msa0560870 | MtrunA17_Chr4g0053241 | 56.195 | 226 | 96 | 3 | 3 | 227 | 22 | 245 | 4.00e-80 | 240 |
| Msa0560870 | MtrunA17_Chr8g0389361 | 52.679 | 224 | 102 | 3 | 5 | 227 | 17 | 237 | 6.00e-70 | 214 |
| Msa0560870 | MtrunA17_Chr6g0487981 | 50.216 | 231 | 105 | 5 | 4 | 227 | 8 | 235 | 1.19e-66 | 205 |
| Msa0560870 | MtrunA17_Chr2g0312921 | 39.545 | 220 | 122 | 4 | 8 | 227 | 88 | 296 | 1.84e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0560870 | AT1G67980.1 | 62.115 | 227 | 83 | 2 | 3 | 229 | 8 | 231 | 9.30e-97 | 282 |
| Msa0560870 | AT1G24735.1 | 60.444 | 225 | 88 | 1 | 5 | 229 | 16 | 239 | 5.09e-94 | 275 |
| Msa0560870 | AT1G67990.1 | 57.269 | 227 | 95 | 2 | 3 | 229 | 8 | 232 | 1.94e-90 | 266 |
| Msa0560870 | AT1G24735.2 | 49.275 | 276 | 88 | 2 | 5 | 229 | 16 | 290 | 5.78e-84 | 251 |
| Msa0560870 | AT4G34050.1 | 50.885 | 226 | 108 | 2 | 3 | 227 | 33 | 256 | 4.41e-79 | 238 |
| Msa0560870 | AT4G34050.3 | 50.885 | 226 | 108 | 2 | 3 | 227 | 60 | 283 | 1.44e-78 | 238 |
| Msa0560870 | AT4G26220.1 | 50.655 | 229 | 109 | 4 | 2 | 229 | 6 | 231 | 5.53e-75 | 227 |
| Msa0560870 | AT1G24735.3 | 58.730 | 189 | 77 | 1 | 41 | 229 | 7 | 194 | 1.10e-73 | 222 |
| Msa0560870 | AT3G61990.1 | 40.724 | 221 | 115 | 4 | 8 | 227 | 83 | 288 | 2.58e-53 | 173 |
| Msa0560870 | AT1G67980.2 | 51.515 | 165 | 77 | 2 | 65 | 229 | 2 | 163 | 8.50e-49 | 158 |
| Msa0560870 | AT3G62000.1 | 38.462 | 221 | 123 | 5 | 8 | 227 | 68 | 276 | 1.88e-46 | 155 |
| Msa0560870 | AT3G62000.2 | 37.264 | 212 | 120 | 5 | 8 | 218 | 68 | 267 | 4.41e-39 | 138 |
| Msa0560870 | AT4G34050.2 | 44.628 | 121 | 66 | 1 | 108 | 227 | 25 | 145 | 2.21e-32 | 115 |
Find 43 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTTCTTTGTTCCTTTGA+TGG | 0.196352 | 4_1:+60191239 | None:intergenic |
| GAAACAACAATTCAGAAGTA+TGG | 0.226874 | 4_1:-60193430 | Msa0560870:CDS |
| TTCAATTGTTCGTGCTCTTT+TGG | 0.241069 | 4_1:+60193463 | None:intergenic |
| TTTCATCACTTTCAGGTAAT+AGG | 0.252449 | 4_1:-60193046 | Msa0560870:intron |
| GAATCAACAATCCTTTCTAT+TGG | 0.264328 | 4_1:-60191294 | Msa0560870:CDS |
| AATCAACAATCCTTTCTATT+GGG | 0.280127 | 4_1:-60191293 | Msa0560870:CDS |
| ATCCACAGTGATGCATTATC+AGG | 0.304543 | 4_1:-60192944 | Msa0560870:CDS |
| TCACGAGCTGTTGTTGAAAT+TGG | 0.308284 | 4_1:-60191466 | Msa0560870:CDS |
| TCAGGTAATAGGAATTGATA+TGG | 0.352155 | 4_1:-60193035 | Msa0560870:intron |
| CAAAACTCCAGCACTTCTTC+AGG | 0.360798 | 4_1:-60193609 | Msa0560870:intron |
| TTGCATATGATAACACATTA+TGG | 0.375536 | 4_1:-60191425 | Msa0560870:CDS |
| ATCATTTGATTATGCATTTG+TGG | 0.388543 | 4_1:-60191517 | Msa0560870:CDS |
| AGGAAATGGAAGATACAATA+AGG | 0.400536 | 4_1:-60191374 | Msa0560870:CDS |
| TTTGAGGATGTTCTTGGCCA+TGG | 0.424703 | 4_1:+60193628 | None:intergenic |
| GATCAACTTGCTGTTTGCTC+TGG | 0.428953 | 4_1:-60193658 | Msa0560870:five_prime_UTR |
| AACTTCTGCCTTCTGAATGA+AGG | 0.443554 | 4_1:+60192985 | None:intergenic |
| TGCTCTTCCTTCTGATGGCA+AGG | 0.457076 | 4_1:-60193135 | Msa0560870:intron |
| GCTCTTGCTCTTCCTTCTGA+TGG | 0.470052 | 4_1:-60193140 | Msa0560870:CDS |
| TTAGAAATTGGAGTCTTCAC+TGG | 0.475666 | 4_1:-60193182 | Msa0560870:CDS |
| ATTATTACCTGAAGAAGTGC+TGG | 0.476254 | 4_1:+60193602 | None:intergenic |
| GAGTATAATGAATGTGCCTT+TGG | 0.477530 | 4_1:-60193258 | Msa0560870:CDS |
| GTTGTTGAAATTGGTGAAGA+AGG | 0.485943 | 4_1:-60191457 | Msa0560870:CDS |
| CATGTCTGAGGATGAGGAAA+TGG | 0.492122 | 4_1:-60191388 | Msa0560870:CDS |
| TGTAGCCATGTCTGAGGATG+AGG | 0.495939 | 4_1:-60191394 | Msa0560870:CDS |
| TTGAGAAATTCATTAACTGC+TGG | 0.509665 | 4_1:-60193687 | Msa0560870:five_prime_UTR |
| TATGATAACACATTATGGTC+TGG | 0.512907 | 4_1:-60191420 | Msa0560870:CDS |
| AAACAACAATTCAGAAGTAT+GGG | 0.513999 | 4_1:-60193429 | Msa0560870:CDS |
| GATAAAGAAGCATATGAGAC+AGG | 0.521908 | 4_1:-60193013 | Msa0560870:CDS |
| TTTGCTCTGGACTTGAACCA+TGG | 0.526078 | 4_1:-60193645 | Msa0560870:exon |
| ATCAACAATCCTTTCTATTG+GGG | 0.546246 | 4_1:-60191292 | Msa0560870:CDS |
| TTGAAATTGGTGAAGAAGGG+TGG | 0.553175 | 4_1:-60191453 | Msa0560870:CDS |
| AATGATACCTTGCCATCAGA+AGG | 0.554204 | 4_1:+60193128 | None:intergenic |
| ACTTCTGCCTTCTGAATGAA+GGG | 0.557570 | 4_1:+60192986 | None:intergenic |
| TTACACCGTCCCCAATAGAA+AGG | 0.565363 | 4_1:+60191283 | None:intergenic |
| TTGTTGAAATTGGTGAAGAA+GGG | 0.567331 | 4_1:-60191456 | Msa0560870:CDS |
| AGGATTGCCCTTCATTCAGA+AGG | 0.568251 | 4_1:-60192993 | Msa0560870:CDS |
| CATTTCCTCATCCTCAGACA+TGG | 0.568293 | 4_1:+60191389 | None:intergenic |
| ATGAATTGTGCTTCATCCAA+AGG | 0.568423 | 4_1:+60193242 | None:intergenic |
| TGCATTTGTGGATGCTGACA+AGG | 0.577388 | 4_1:-60191505 | Msa0560870:CDS |
| ACAATCCTTTCTATTGGGGA+CGG | 0.594828 | 4_1:-60191288 | Msa0560870:CDS |
| AGAGTTCTCTAAGCCATCAA+AGG | 0.614512 | 4_1:-60191252 | Msa0560870:exon |
| TGGTTCTGTAGCCATGTCTG+AGG | 0.624517 | 4_1:-60191400 | Msa0560870:CDS |
| TGCCTGATAATGCATCACTG+TGG | 0.800721 | 4_1:+60192942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAAAATCATATATTTTT+TGG | - | chr4_1:60192741-60192760 | Msa0560870:intron | 10.0% |
| !! | TTAAGAAAACTTAATTAATC+TGG | + | chr4_1:60191335-60191354 | None:intergenic | 15.0% |
| !!! | ACATTGATTTTAATATTTGT+TGG | - | chr4_1:60191597-60191616 | Msa0560870:intron | 15.0% |
| !!! | CATTGATTTTAATATTTGTT+GGG | - | chr4_1:60191598-60191617 | Msa0560870:intron | 15.0% |
| !! | AATAAGATAATCATTCAATT+TGG | + | chr4_1:60192111-60192130 | None:intergenic | 15.0% |
| !!! | CTTATAATAATAGTTCTTTT+CGG | - | chr4_1:60192164-60192183 | Msa0560870:intron | 15.0% |
| !! | GAATTAACAAATAAATTAAC+TGG | + | chr4_1:60192592-60192611 | None:intergenic | 15.0% |
| !! | TTCAATTTCTTAAGTATATT+TGG | - | chr4_1:60193264-60193283 | Msa0560870:intron | 15.0% |
| !!! | ATTCATAATTTTAAGAAGCA+TGG | + | chr4_1:60191679-60191698 | None:intergenic | 20.0% |
| !! | ATAATCATTCAATTTGGATT+GGG | + | chr4_1:60192105-60192124 | None:intergenic | 20.0% |
| !! | AAACAACAATTCAGAAGTAT+GGG | - | chr4_1:60191464-60191483 | Msa0560870:CDS | 25.0% |
| !!! | ATTTTAATATTTGTTGGGTG+TGG | - | chr4_1:60191603-60191622 | Msa0560870:intron | 25.0% |
| ! | GCGAAAAAAACATTAGAAAT+TGG | - | chr4_1:60191699-60191718 | Msa0560870:intron | 25.0% |
| ! | GAATAAATTTCATCACTTTC+AGG | - | chr4_1:60191840-60191859 | Msa0560870:intron | 25.0% |
| ! | GATAATCATTCAATTTGGAT+TGG | + | chr4_1:60192106-60192125 | None:intergenic | 25.0% |
| !! | ATAATAATAGTTCTTTTCGG+TGG | - | chr4_1:60192167-60192186 | Msa0560870:intron | 25.0% |
| !!! | ACTAGTACTGACATTTTTTA+TGG | + | chr4_1:60192614-60192633 | None:intergenic | 25.0% |
| !! | TTACTAAGATTTTCCTTAGT+AGG | + | chr4_1:60192662-60192681 | None:intergenic | 25.0% |
| ! | AAGGAAAATCTTAGTAAAAG+AGG | - | chr4_1:60192665-60192684 | Msa0560870:intron | 25.0% |
| ! | AGGAAAATCTTAGTAAAAGA+GGG | - | chr4_1:60192666-60192685 | Msa0560870:intron | 25.0% |
| !!! | TTTTGGTTGTCCAATTTTAT+CGG | - | chr4_1:60192758-60192777 | Msa0560870:intron | 25.0% |
| !!! | TATTCATTTTCTGCTTTGTT+AGG | - | chr4_1:60192805-60192824 | Msa0560870:intron | 25.0% |
| !!! | ATTCATTTTCTGCTTTGTTA+GGG | - | chr4_1:60192806-60192825 | Msa0560870:intron | 25.0% |
| !!! | TGTTTTAAATTGTATCATCG+TGG | - | chr4_1:60192989-60193008 | Msa0560870:CDS | 25.0% |
| ! | TGTTTCGAAAAGAAAACTTA+TGG | - | chr4_1:60193235-60193254 | Msa0560870:CDS | 25.0% |
| ! | GTTTCGAAAAGAAAACTTAT+GGG | - | chr4_1:60193236-60193255 | Msa0560870:CDS | 25.0% |
| ! | TCGTTTAGACAATGAATTAA+AGG | - | chr4_1:60193315-60193334 | Msa0560870:intron | 25.0% |
| ! | ATCATTTGATTATGCATTTG+TGG | - | chr4_1:60193376-60193395 | Msa0560870:intron | 25.0% |
| ! | TTGCATATGATAACACATTA+TGG | - | chr4_1:60193468-60193487 | Msa0560870:CDS | 25.0% |
| !! | TCAATTGCAACATTTCTTTT+TGG | + | chr4_1:60193545-60193564 | None:intergenic | 25.0% |
| ! | AATCAACAATCCTTTCTATT+GGG | - | chr4_1:60193600-60193619 | Msa0560870:intron | 25.0% |
| !! | TTATTTCTTTGTTCCTTTGA+TGG | + | chr4_1:60193657-60193676 | None:intergenic | 25.0% |
| TTGAGAAATTCATTAACTGC+TGG | - | chr4_1:60191206-60191225 | Msa0560870:three_prime_UTR | 30.0% | |
| ! | CTTAATTAATCTGGTTTCAG+TGG | + | chr4_1:60191326-60191345 | None:intergenic | 30.0% |
| ! | AACTTGTTTCAAGAATGTAC+TGG | + | chr4_1:60191405-60191424 | None:intergenic | 30.0% |
| GAAACAACAATTCAGAAGTA+TGG | - | chr4_1:60191463-60191482 | Msa0560870:CDS | 30.0% | |
| ! | TTTCATCACTTTCAGGTAAT+AGG | - | chr4_1:60191847-60191866 | Msa0560870:intron | 30.0% |
| TCAGGTAATAGGAATTGATA+TGG | - | chr4_1:60191858-60191877 | Msa0560870:intron | 30.0% | |
| !! | GTTGGTTTGATGAAAACTTA+AGG | - | chr4_1:60192236-60192255 | Msa0560870:intron | 30.0% |
| GAAAACTTAAGGAATGTGAT+TGG | - | chr4_1:60192247-60192266 | Msa0560870:intron | 30.0% | |
| ATTCAACAATCATATCTGCT+TGG | + | chr4_1:60192380-60192399 | None:intergenic | 30.0% | |
| GATATGATTGTTGAATGAGT+TGG | - | chr4_1:60192384-60192403 | Msa0560870:intron | 30.0% | |
| ! | GAGAAAAAGGTTGTTTCAAT+GGG | - | chr4_1:60192406-60192425 | Msa0560870:intron | 30.0% |
| TTAACTGGTTATTCACTTTC+AGG | + | chr4_1:60192577-60192596 | None:intergenic | 30.0% | |
| !!! | AAATGTCAGTACTAGTTTTG+AGG | - | chr4_1:60192618-60192637 | Msa0560870:intron | 30.0% |
| !!! | TTTTGAGGCTTTTCCAAAAT+AGG | - | chr4_1:60192633-60192652 | Msa0560870:intron | 30.0% |
| GGAAAATCTTAGTAAAAGAG+GGG | - | chr4_1:60192667-60192686 | Msa0560870:intron | 30.0% | |
| ATCCAAACAACCGATAAAAT+TGG | + | chr4_1:60192771-60192790 | None:intergenic | 30.0% | |
| !! | TTTTTACGTGTTACTAGTAC+TGG | - | chr4_1:60192914-60192933 | Msa0560870:intron | 30.0% |
| AAAACAATTCCATGAATTGC+AGG | - | chr4_1:60193340-60193359 | Msa0560870:intron | 30.0% | |
| AAACAATTCCATGAATTGCA+GGG | - | chr4_1:60193341-60193360 | Msa0560870:intron | 30.0% | |
| TTGTTGAAATTGGTGAAGAA+GGG | - | chr4_1:60193437-60193456 | Msa0560870:CDS | 30.0% | |
| TATGATAACACATTATGGTC+TGG | - | chr4_1:60193473-60193492 | Msa0560870:CDS | 30.0% | |
| AGGAAATGGAAGATACAATA+AGG | - | chr4_1:60193519-60193538 | Msa0560870:intron | 30.0% | |
| GAATCAACAATCCTTTCTAT+TGG | - | chr4_1:60193599-60193618 | Msa0560870:intron | 30.0% | |
| ATCAACAATCCTTTCTATTG+GGG | - | chr4_1:60193601-60193620 | Msa0560870:intron | 30.0% | |
| ! | ATTATTACCTGAAGAAGTGC+TGG | + | chr4_1:60191294-60191313 | None:intergenic | 35.0% |
| ! | TTCAATTGTTCGTGCTCTTT+TGG | + | chr4_1:60191433-60191452 | None:intergenic | 35.0% |
| GAGTATAATGAATGTGCCTT+TGG | - | chr4_1:60191635-60191654 | Msa0560870:intron | 35.0% | |
| ATGAATTGTGCTTCATCCAA+AGG | + | chr4_1:60191654-60191673 | None:intergenic | 35.0% | |
| TTAGAAATTGGAGTCTTCAC+TGG | - | chr4_1:60191711-60191730 | Msa0560870:intron | 35.0% | |
| ! | GATAAAGAAGCATATGAGAC+AGG | - | chr4_1:60191880-60191899 | Msa0560870:intron | 35.0% |
| ! | ATAATAGTTCTTTTCGGTGG+AGG | - | chr4_1:60192170-60192189 | Msa0560870:intron | 35.0% |
| ! | TAATAGTTCTTTTCGGTGGA+GGG | - | chr4_1:60192171-60192190 | Msa0560870:intron | 35.0% |
| ! | AATCAATAGCGAGGTATCAT+AGG | - | chr4_1:60192200-60192219 | Msa0560870:intron | 35.0% |
| TTAAGGAATGTGATTGGAGA+TGG | - | chr4_1:60192253-60192272 | Msa0560870:intron | 35.0% | |
| TAAGGAATGTGATTGGAGAT+GGG | - | chr4_1:60192254-60192273 | Msa0560870:intron | 35.0% | |
| ! | ATGGGAAAGAGACGAATTTT+TGG | - | chr4_1:60192272-60192291 | Msa0560870:intron | 35.0% |
| AAATCGTCTTCATTGATCCA+TGG | + | chr4_1:60192304-60192323 | None:intergenic | 35.0% | |
| ! | GTTGAATGAGTTGGAGAAAA+AGG | - | chr4_1:60192393-60192412 | Msa0560870:intron | 35.0% |
| ! | GGAGAAAAAGGTTGTTTCAA+TGG | - | chr4_1:60192405-60192424 | Msa0560870:intron | 35.0% |
| ! | AAAAAGGTTGTTTCAATGGG+AGG | - | chr4_1:60192409-60192428 | Msa0560870:intron | 35.0% |
| ! | ACAGGAAGATGTTTGGAATT+GGG | - | chr4_1:60192480-60192499 | Msa0560870:intron | 35.0% |
| ! | CCTTAGTAGGAATCCTATTT+TGG | + | chr4_1:60192649-60192668 | None:intergenic | 35.0% |
| CCAAAATAGGATTCCTACTA+AGG | - | chr4_1:60192646-60192665 | Msa0560870:intron | 35.0% | |
| AACTCTTCTTCTCTATGTGT+TGG | - | chr4_1:60192698-60192717 | Msa0560870:intron | 35.0% | |
| !! | GTCCAATTTTATCGGTTGTT+TGG | - | chr4_1:60192766-60192785 | Msa0560870:intron | 35.0% |
| CAAACCTGAGAAATAGAAAC+CGG | + | chr4_1:60192878-60192897 | None:intergenic | 35.0% | |
| ! | TTCTATTTCTCAGGTTTGGA+TGG | - | chr4_1:60192880-60192899 | Msa0560870:intron | 35.0% |
| TATCATCCTTTATGTAGCAG+TGG | - | chr4_1:60192961-60192980 | Msa0560870:CDS | 35.0% | |
| !! | ATCATCGTGGCTTTATTGTA+TGG | - | chr4_1:60193002-60193021 | Msa0560870:CDS | 35.0% |
| !! | TCATCGTGGCTTTATTGTAT+GGG | - | chr4_1:60193003-60193022 | Msa0560870:CDS | 35.0% |
| TAGCAATATCGTCTTTGTGT+CGG | - | chr4_1:60193026-60193045 | Msa0560870:CDS | 35.0% | |
| AAACGAATTAGATGCTCTAG+AGG | + | chr4_1:60193301-60193320 | None:intergenic | 35.0% | |
| GTTGTTGAAATTGGTGAAGA+AGG | - | chr4_1:60193436-60193455 | Msa0560870:CDS | 35.0% | |
| !!! | TGGAGTTTTGAGGATGTTCT+TGG | + | chr4_1:60191274-60191293 | None:intergenic | 40.0% |
| ! | TTGTTCGTGCTCTTTTGGAT+AGG | + | chr4_1:60191428-60191447 | None:intergenic | 40.0% |
| AATGATACCTTGCCATCAGA+AGG | + | chr4_1:60191768-60191787 | None:intergenic | 40.0% | |
| ACTTCTGCCTTCTGAATGAA+GGG | + | chr4_1:60191910-60191929 | None:intergenic | 40.0% | |
| AACTTCTGCCTTCTGAATGA+AGG | + | chr4_1:60191911-60191930 | None:intergenic | 40.0% | |
| ATCCACAGTGATGCATTATC+AGG | - | chr4_1:60191949-60191968 | Msa0560870:intron | 40.0% | |
| !! | CGAATTTTTGGATAGAGCCA+TGG | - | chr4_1:60192284-60192303 | Msa0560870:intron | 40.0% |
| ! | GACAGGAAGATGTTTGGAAT+TGG | - | chr4_1:60192479-60192498 | Msa0560870:intron | 40.0% |
| ! | CAGGAAGATGTTTGGAATTG+GGG | - | chr4_1:60192481-60192500 | Msa0560870:intron | 40.0% |
| AATCTTCTTCGCCTAACCAA+TGG | + | chr4_1:60192537-60192556 | None:intergenic | 40.0% | |
| TTGGTTAGGCGAAGAAGATT+CGG | - | chr4_1:60192537-60192556 | Msa0560870:intron | 40.0% | |
| TCTTCTTCTCTATGTGTTGG+TGG | - | chr4_1:60192701-60192720 | Msa0560870:intron | 40.0% | |
| ATCGGTTGTTTGGATTGAGT+CGG | - | chr4_1:60192776-60192795 | Msa0560870:intron | 40.0% | |
| ! | CGGTTTCTATTTCTCAGGTT+TGG | - | chr4_1:60192876-60192895 | Msa0560870:intron | 40.0% |
| !! | TACTAGTACTGGTTCACTCT+TGG | - | chr4_1:60192925-60192944 | Msa0560870:CDS | 40.0% |
| AGAGCAAGAGAAATGCTCAA+AGG | + | chr4_1:60193056-60193075 | None:intergenic | 40.0% | |
| TTAACACTCATCTTGTGCTG+TGG | - | chr4_1:60193121-60193140 | Msa0560870:intron | 40.0% | |
| CAAGATCTACAAGGTCTCAA+CGG | + | chr4_1:60193157-60193176 | None:intergenic | 40.0% | |
| TCACGAGCTGTTGTTGAAAT+TGG | - | chr4_1:60193427-60193446 | Msa0560870:CDS | 40.0% | |
| TTGAAATTGGTGAAGAAGGG+TGG | - | chr4_1:60193440-60193459 | Msa0560870:CDS | 40.0% | |
| ACAATCCTTTCTATTGGGGA+CGG | - | chr4_1:60193605-60193624 | Msa0560870:intron | 40.0% | |
| AGAGTTCTCTAAGCCATCAA+AGG | - | chr4_1:60193641-60193660 | Msa0560870:exon | 40.0% | |
| !! | GATCAACTTGCTGTTTGCTC+TGG | - | chr4_1:60191235-60191254 | Msa0560870:three_prime_UTR | 45.0% |
| ! | TTTGCTCTGGACTTGAACCA+TGG | - | chr4_1:60191248-60191267 | Msa0560870:exon | 45.0% |
| TTTGAGGATGTTCTTGGCCA+TGG | + | chr4_1:60191268-60191287 | None:intergenic | 45.0% | |
| !!! | GAAGAAGTGCTGGAGTTTTG+AGG | + | chr4_1:60191284-60191303 | None:intergenic | 45.0% |
| CAAAACTCCAGCACTTCTTC+AGG | - | chr4_1:60191284-60191303 | Msa0560870:CDS | 45.0% | |
| ! | ATATTTGTTGGGTGTGGCAC+TGG | - | chr4_1:60191609-60191628 | Msa0560870:intron | 45.0% |
| AGGATTGCCCTTCATTCAGA+AGG | - | chr4_1:60191900-60191919 | Msa0560870:intron | 45.0% | |
| ! | TGCCTGATAATGCATCACTG+TGG | + | chr4_1:60191954-60191973 | None:intergenic | 45.0% |
| GGGAATCGAAATCAATAGCG+AGG | - | chr4_1:60192191-60192210 | Msa0560870:intron | 45.0% | |
| ! | AAGGTTGTTTCAATGGGAGG+AGG | - | chr4_1:60192412-60192431 | Msa0560870:intron | 45.0% |
| ! | AGATGTTTGGAATTGGGGAG+AGG | - | chr4_1:60192486-60192505 | Msa0560870:intron | 45.0% |
| AGAGGCGAGTTTCTCAGTTA+AGG | - | chr4_1:60192504-60192523 | Msa0560870:intron | 45.0% | |
| CAGTTAAGGCAGCTTACCAT+TGG | - | chr4_1:60192518-60192537 | Msa0560870:intron | 45.0% | |
| ! | AAGGCAGCTTACCATTGGTT+AGG | - | chr4_1:60192523-60192542 | Msa0560870:intron | 45.0% |
| !! | CTCTATGTGTTGGTGGATTG+TGG | - | chr4_1:60192708-60192727 | Msa0560870:intron | 45.0% |
| AGTCCTGTCTGATTGTGCAT+TGG | - | chr4_1:60192832-60192851 | Msa0560870:intron | 45.0% | |
| GTCCTGTCTGATTGTGCATT+GGG | - | chr4_1:60192833-60192852 | Msa0560870:intron | 45.0% | |
| TCCTGTCTGATTGTGCATTG+GGG | - | chr4_1:60192834-60192853 | Msa0560870:intron | 45.0% | |
| !! | TGTGCCGGTTTCTATTTCTC+AGG | - | chr4_1:60192871-60192890 | Msa0560870:intron | 45.0% |
| GAGACCTTGTAGATCTTGCT+CGG | - | chr4_1:60193159-60193178 | Msa0560870:CDS | 45.0% | |
| AGACCTTGTAGATCTTGCTC+GGG | - | chr4_1:60193160-60193179 | Msa0560870:CDS | 45.0% | |
| TAACCCGAGCAAGATCTACA+AGG | + | chr4_1:60193166-60193185 | None:intergenic | 45.0% | |
| CATGTTTGCCCTGCAATTCA+TGG | + | chr4_1:60193352-60193371 | None:intergenic | 45.0% | |
| TGCATTTGTGGATGCTGACA+AGG | - | chr4_1:60193388-60193407 | Msa0560870:intron | 45.0% | |
| CATTTCCTCATCCTCAGACA+TGG | + | chr4_1:60193507-60193526 | None:intergenic | 45.0% | |
| CATGTCTGAGGATGAGGAAA+TGG | - | chr4_1:60193505-60193524 | Msa0560870:intron | 45.0% | |
| TTACACCGTCCCCAATAGAA+AGG | + | chr4_1:60193613-60193632 | None:intergenic | 45.0% | |
| GCTCTTGCTCTTCCTTCTGA+TGG | - | chr4_1:60191753-60191772 | Msa0560870:intron | 50.0% | |
| TGCTCTTCCTTCTGATGGCA+AGG | - | chr4_1:60191758-60191777 | Msa0560870:intron | 50.0% | |
| ! | ATAGCGAGGTATCATAGGCG+TGG | - | chr4_1:60192205-60192224 | Msa0560870:intron | 50.0% |
| GTTTCAATGGGAGGAGGAGA+TGG | - | chr4_1:60192418-60192437 | Msa0560870:intron | 50.0% | |
| TCTGGTGCTTGGAGTTGAGA+AGG | - | chr4_1:60192441-60192460 | Msa0560870:intron | 50.0% | |
| CTTGGAGTTGAGAAGGTGGA+GGG | - | chr4_1:60192448-60192467 | Msa0560870:intron | 50.0% | |
| GGACAGGACAGGAAGATGTT+TGG | - | chr4_1:60192473-60192492 | Msa0560870:intron | 50.0% | |
| AGGCGAAGAAGATTCGGAAG+TGG | - | chr4_1:60192543-60192562 | Msa0560870:intron | 50.0% | |
| CGAAGAAGATTCGGAAGTGG+TGG | - | chr4_1:60192546-60192565 | Msa0560870:intron | 50.0% | |
| ! | AAGATTCGGAAGTGGTGGAG+TGG | - | chr4_1:60192551-60192570 | Msa0560870:intron | 50.0% |
| ACCCCAATGCACAATCAGAC+AGG | + | chr4_1:60192838-60192857 | None:intergenic | 50.0% | |
| TCTGATTGTGCATTGGGGTC+TGG | - | chr4_1:60192839-60192858 | Msa0560870:intron | 50.0% | |
| ATCGCGCCACTGCTACATAA+AGG | + | chr4_1:60192970-60192989 | None:intergenic | 50.0% | |
| ! | TGGTTCTGTAGCCATGTCTG+AGG | - | chr4_1:60193493-60193512 | Msa0560870:intron | 50.0% |
| TGTAGCCATGTCTGAGGATG+AGG | - | chr4_1:60193499-60193518 | Msa0560870:intron | 50.0% | |
| AATGGGAGGAGGAGATGGTC+TGG | - | chr4_1:60192423-60192442 | Msa0560870:intron | 55.0% | |
| GGTGCTTGGAGTTGAGAAGG+TGG | - | chr4_1:60192444-60192463 | Msa0560870:intron | 55.0% | |
| GCTTGGAGTTGAGAAGGTGG+AGG | - | chr4_1:60192447-60192466 | Msa0560870:intron | 55.0% | |
| GAGTTGAGAAGGTGGAGGGA+GGG | - | chr4_1:60192452-60192471 | Msa0560870:intron | 55.0% | |
| ! | TGTGCATTGGGGTCTGGTTC+TGG | - | chr4_1:60192845-60192864 | Msa0560870:intron | 55.0% |
| !! | TTGTTGGGTGTGGCACTGGC+AGG | - | chr4_1:60191613-60191632 | Msa0560870:intron | 60.0% |
| ! | GCGAGGTATCATAGGCGTGG+AGG | - | chr4_1:60192208-60192227 | Msa0560870:intron | 60.0% |
| ATAGGCGTGGAGGAGCGAGT+TGG | - | chr4_1:60192218-60192237 | Msa0560870:intron | 60.0% | |
| GGAGGAGATGGTCTGGTGCT+TGG | - | chr4_1:60192430-60192449 | Msa0560870:intron | 60.0% | |
| GGAGTTGAGAAGGTGGAGGG+AGG | - | chr4_1:60192451-60192470 | Msa0560870:intron | 60.0% | |
| !! | GTCTGGTTCTGGCTCTGTGC+CGG | - | chr4_1:60192856-60192875 | Msa0560870:intron | 60.0% |
| GAGAAGGTGGAGGGAGGGAC+AGG | - | chr4_1:60192457-60192476 | Msa0560870:intron | 65.0% | |
| GGTGGAGGGAGGGACAGGAC+AGG | - | chr4_1:60192462-60192481 | Msa0560870:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 60191202 | 60193713 | 60191202 | ID=Msa0560870;Name=Msa0560870 |
| chr4_1 | mRNA | 60191202 | 60193713 | 60191202 | ID=Msa0560870-mRNA-1;Parent=Msa0560870;Name=Msa0560870-mRNA-1;_AED=0.06;_eAED=0.06;_QI=65|1|1|1|0.75|1|5|61|229 |
| chr4_1 | exon | 60191202 | 60191553 | 60191202 | ID=Msa0560870-mRNA-1:exon:18801;Parent=Msa0560870-mRNA-1 |
| chr4_1 | exon | 60192925 | 60193053 | 60192925 | ID=Msa0560870-mRNA-1:exon:18800;Parent=Msa0560870-mRNA-1 |
| chr4_1 | exon | 60193136 | 60193280 | 60193136 | ID=Msa0560870-mRNA-1:exon:18799;Parent=Msa0560870-mRNA-1 |
| chr4_1 | exon | 60193424 | 60193509 | 60193424 | ID=Msa0560870-mRNA-1:exon:18798;Parent=Msa0560870-mRNA-1 |
| chr4_1 | exon | 60193610 | 60193713 | 60193610 | ID=Msa0560870-mRNA-1:exon:18797;Parent=Msa0560870-mRNA-1 |
| chr4_1 | five_prime_UTR | 60193649 | 60193713 | 60193649 | ID=Msa0560870-mRNA-1:five_prime_utr;Parent=Msa0560870-mRNA-1 |
| chr4_1 | CDS | 60193610 | 60193648 | 60193610 | ID=Msa0560870-mRNA-1:cds;Parent=Msa0560870-mRNA-1 |
| chr4_1 | CDS | 60193424 | 60193509 | 60193424 | ID=Msa0560870-mRNA-1:cds;Parent=Msa0560870-mRNA-1 |
| chr4_1 | CDS | 60193136 | 60193280 | 60193136 | ID=Msa0560870-mRNA-1:cds;Parent=Msa0560870-mRNA-1 |
| chr4_1 | CDS | 60192925 | 60193053 | 60192925 | ID=Msa0560870-mRNA-1:cds;Parent=Msa0560870-mRNA-1 |
| chr4_1 | CDS | 60191263 | 60191553 | 60191263 | ID=Msa0560870-mRNA-1:cds;Parent=Msa0560870-mRNA-1 |
| chr4_1 | three_prime_UTR | 60191202 | 60191262 | 60191202 | ID=Msa0560870-mRNA-1:three_prime_utr;Parent=Msa0560870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
