AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641670 MtrunA17_Chr4g0051041 97.817 229 5 0 1 229 1 229 2.53e-165 455
Msa0641670 MtrunA17_Chr4g0053331 54.825 228 96 3 3 227 17 240 1.53e-83 248
Msa0641670 MtrunA17_Chr4g0044581 52.655 226 104 2 3 227 21 244 9.59e-82 244
Msa0641670 MtrunA17_Chr4g0053031 53.097 226 103 3 3 227 22 245 2.01e-81 243
Msa0641670 MtrunA17_Chr8g0344401 54.464 224 99 2 5 227 11 232 6.28e-81 241
Msa0641670 MtrunA17_Chr4g0053021 55.752 226 97 2 3 227 20 243 3.88e-80 240
Msa0641670 MtrunA17_Chr4g0053241 56.195 226 96 3 3 227 22 245 6.19e-80 239
Msa0641670 MtrunA17_Chr8g0389361 52.679 224 102 3 5 227 17 237 1.05e-70 216
Msa0641670 MtrunA17_Chr6g0487981 50.216 231 105 5 4 227 8 235 4.66e-67 206
Msa0641670 MtrunA17_Chr2g0312921 39.091 220 123 4 8 227 88 296 1.18e-45 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641670 AT1G67980.1 62.115 227 83 2 3 229 8 231 5.62e-97 283
Msa0641670 AT1G24735.1 60.889 225 87 1 5 229 16 239 1.60e-94 276
Msa0641670 AT1G67990.1 57.269 227 95 2 3 229 8 232 1.16e-90 266
Msa0641670 AT1G24735.2 49.638 276 87 2 5 229 16 290 1.31e-84 253
Msa0641670 AT4G34050.1 50.885 226 108 2 3 227 33 256 7.77e-79 238
Msa0641670 AT4G34050.3 50.885 226 108 2 3 227 60 283 3.83e-78 237
Msa0641670 AT4G26220.1 51.092 229 108 4 2 229 6 231 2.66e-75 228
Msa0641670 AT1G24735.3 59.259 189 76 1 41 229 7 194 2.57e-74 224
Msa0641670 AT3G61990.1 40.271 221 116 4 8 227 83 288 1.84e-52 171
Msa0641670 AT1G67980.2 51.515 165 77 2 65 229 2 163 6.62e-49 158
Msa0641670 AT3G62000.1 38.009 221 124 5 8 227 68 276 2.22e-45 152
Msa0641670 AT3G62000.2 36.792 212 121 5 8 218 68 267 3.50e-38 136
Msa0641670 AT4G34050.2 44.628 121 66 1 108 227 25 145 5.06e-32 114

Find 43 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTCTTTGTTCCTTTGA+TGG 0.196352 4_3:-42341774 None:intergenic
GAAACAACAATTCAGAAGTA+TGG 0.226874 4_3:+42339584 Msa0641670:CDS
TTCAATTGTTCGTGCTCTTT+TGG 0.241069 4_3:-42339551 None:intergenic
TTTCATCACTTTCAGGTAAT+AGG 0.252449 4_3:+42339968 Msa0641670:intron
GAATCAACAATCCTTTCTAT+TGG 0.264328 4_3:+42341719 Msa0641670:CDS
AATCAACAATCCTTTCTATT+GGG 0.280127 4_3:+42341720 Msa0641670:CDS
ATCCACAGTGATGCATTATC+AGG 0.304543 4_3:+42340070 Msa0641670:CDS
TCACGAGCTGTTGTTGAAAT+TGG 0.308284 4_3:+42341547 Msa0641670:CDS
TCAGGTAATAGGAATTGATA+TGG 0.352155 4_3:+42339979 Msa0641670:intron
CAAAACTCCAGCACTTCTTC+AGG 0.360798 4_3:+42339405 Msa0641670:CDS
TTGCATATGATAACACATTA+TGG 0.375536 4_3:+42341588 Msa0641670:CDS
ATCATTTGATTATGCATTTG+TGG 0.388543 4_3:+42341496 Msa0641670:CDS
AGGAAATGGAAGATACAATA+AGG 0.400536 4_3:+42341639 Msa0641670:CDS
TTTGAGGATGTTCTTGGCCA+TGG 0.424703 4_3:-42339386 None:intergenic
GATCAACTTGCTGTTTGCTC+TGG 0.428953 4_3:+42339356 Msa0641670:five_prime_UTR
AACTTCTGCCTTCTGAATGA+AGG 0.443554 4_3:-42340029 None:intergenic
TGCTCTTCCTTCTGATGGCA+AGG 0.457076 4_3:+42339879 Msa0641670:CDS
TTAGAAATTGGAGTCTTCAC+TGG 0.475666 4_3:+42339832 Msa0641670:CDS
ATTATTACCTGAAGAAGTGC+TGG 0.476254 4_3:-42339412 None:intergenic
GAGTATAATGAATGTGCCTT+TGG 0.477530 4_3:+42339756 Msa0641670:CDS
GTTGTTGAAATTGGTGAAGA+AGG 0.485943 4_3:+42341556 Msa0641670:CDS
CATGTCTGAGGATGAGGAAA+TGG 0.492122 4_3:+42341625 Msa0641670:CDS
GCTCTTGCTCTTCCTTCTGA+TGG 0.495333 4_3:+42339874 Msa0641670:CDS
TGTAGCCATGTCTGAGGATG+AGG 0.495939 4_3:+42341619 Msa0641670:CDS
TTGAGAAATTCATTAACTGC+TGG 0.509665 4_3:+42339327 Msa0641670:five_prime_UTR
TATGATAACACATTATGGTC+TGG 0.512907 4_3:+42341593 Msa0641670:CDS
AAACAACAATTCAGAAGTAT+GGG 0.513999 4_3:+42339585 Msa0641670:CDS
GATAAAGAAGCATATGAGAC+AGG 0.521908 4_3:+42340001 Msa0641670:CDS
TTTGCTCTGGACTTGAACCA+TGG 0.526078 4_3:+42339369 Msa0641670:exon
ATCAACAATCCTTTCTATTG+GGG 0.546246 4_3:+42341721 Msa0641670:CDS
TTGAAATTGGTGAAGAAGGG+TGG 0.553175 4_3:+42341560 Msa0641670:CDS
AATGATACCTTGCCATCAGA+AGG 0.554204 4_3:-42339886 None:intergenic
ACTTCTGCCTTCTGAATGAA+GGG 0.557570 4_3:-42340028 None:intergenic
ATGAATTGTGCTTCATCCAA+AGG 0.563739 4_3:-42339772 None:intergenic
TTACACCGTCCCCAATAGAA+AGG 0.565363 4_3:-42341730 None:intergenic
TTGTTGAAATTGGTGAAGAA+GGG 0.567331 4_3:+42341557 Msa0641670:CDS
AGGATTGCCCTTCATTCAGA+AGG 0.568251 4_3:+42340021 Msa0641670:CDS
CATTTCCTCATCCTCAGACA+TGG 0.568293 4_3:-42341624 None:intergenic
TGCATTTGTGGATGCTGACA+AGG 0.577388 4_3:+42341508 Msa0641670:CDS
ACAATCCTTTCTATTGGGGA+CGG 0.594828 4_3:+42341725 Msa0641670:CDS
AGAGTTCTCTAAGCCATCAA+AGG 0.614512 4_3:+42341761 Msa0641670:exon
TGGTTCTGTAGCCATGTCTG+AGG 0.624517 4_3:+42341613 Msa0641670:CDS
TGCCTGATAATGCATCACTG+TGG 0.800721 4_3:-42340072 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGAAAATCATATATTTTT+TGG + chr4_3:42340861-42340880 Msa0641670:intron 10.0%
!!! ACATTGATTTTAATATTTGT+TGG + chr4_3:42339718-42339737 Msa0641670:intron 15.0%
!!! CATTGATTTTAATATTTGTT+GGG + chr4_3:42339719-42339738 Msa0641670:intron 15.0%
!! AATAAGATAATCATTCAATT+TGG - chr4_3:42340231-42340250 None:intergenic 15.0%
!!! CTTATAATAATAGTTCTTTT+CGG + chr4_3:42340284-42340303 Msa0641670:intron 15.0%
!! TTCAATTTCTTAAGTATATT+TGG + chr4_3:42341384-42341403 Msa0641670:intron 15.0%
!! TTAAGAAAACTCAATTAATC+TGG - chr4_3:42339456-42339475 None:intergenic 20.0%
!! TAATTAATATCTCTAGTAGA+AGG - chr4_3:42339480-42339499 None:intergenic 20.0%
!! ATAATCATTCAATTTGGATT+GGG - chr4_3:42340225-42340244 None:intergenic 20.0%
!! GAATTAACGAATAAATTAAC+TGG - chr4_3:42340712-42340731 None:intergenic 20.0%
!! AACTTGTTTCAAGAATATAC+TGG - chr4_3:42339526-42339545 None:intergenic 25.0%
!! AAACAACAATTCAGAAGTAT+GGG + chr4_3:42339585-42339604 Msa0641670:CDS 25.0%
!!! ATTTTAATATTTGTTGGGTG+TGG + chr4_3:42339724-42339743 Msa0641670:intron 25.0%
! GCGAAAAAAACATTAGAAAT+TGG + chr4_3:42339820-42339839 Msa0641670:CDS 25.0%
! GAATAAATTTCATCACTTTC+AGG + chr4_3:42339961-42339980 Msa0641670:intron 25.0%
! GATAATCATTCAATTTGGAT+TGG - chr4_3:42340226-42340245 None:intergenic 25.0%
!! ATAATAATAGTTCTTTTCGG+TGG + chr4_3:42340287-42340306 Msa0641670:intron 25.0%
!!! ACTAGTACTGACATTTTTTA+TGG - chr4_3:42340734-42340753 None:intergenic 25.0%
!! TTACTAAGATTTTCCTTAGT+AGG - chr4_3:42340782-42340801 None:intergenic 25.0%
! AAGGAAAATCTTAGTAAAAG+AGG + chr4_3:42340785-42340804 Msa0641670:intron 25.0%
! AGGAAAATCTTAGTAAAAGA+GGG + chr4_3:42340786-42340805 Msa0641670:intron 25.0%
!!! TTTTGGTTGTCCAATTTTAT+CGG + chr4_3:42340878-42340897 Msa0641670:intron 25.0%
!!! TATTCATTTTCTGCTTTGTT+AGG + chr4_3:42340925-42340944 Msa0641670:intron 25.0%
!!! ATTCATTTTCTGCTTTGTTA+GGG + chr4_3:42340926-42340945 Msa0641670:intron 25.0%
!!! TGTTTTAAATTGTATCATCG+TGG + chr4_3:42341109-42341128 Msa0641670:intron 25.0%
! TGTTTCGAAAAGAAAACTTA+TGG + chr4_3:42341355-42341374 Msa0641670:intron 25.0%
! GTTTCGAAAAGAAAACTTAT+GGG + chr4_3:42341356-42341375 Msa0641670:intron 25.0%
! TCGTTTAGACAATGAATTAA+AGG + chr4_3:42341435-42341454 Msa0641670:intron 25.0%
! ATCATTTGATTATGCATTTG+TGG + chr4_3:42341496-42341515 Msa0641670:CDS 25.0%
! TTGCATATGATAACACATTA+TGG + chr4_3:42341588-42341607 Msa0641670:CDS 25.0%
!! TCAATTGCAACTTTTCTTTT+TGG - chr4_3:42341665-42341684 None:intergenic 25.0%
! AATCAACAATCCTTTCTATT+GGG + chr4_3:42341720-42341739 Msa0641670:CDS 25.0%
!! TTATTTCTTTGTTCCTTTGA+TGG - chr4_3:42341777-42341796 None:intergenic 25.0%
TTGAGAAATTCATTAACTGC+TGG + chr4_3:42339327-42339346 Msa0641670:five_prime_UTR 30.0%
GAAACAACAATTCAGAAGTA+TGG + chr4_3:42339584-42339603 Msa0641670:CDS 30.0%
! TTTCATCACTTTCAGGTAAT+AGG + chr4_3:42339968-42339987 Msa0641670:intron 30.0%
TCAGGTAATAGGAATTGATA+TGG + chr4_3:42339979-42339998 Msa0641670:intron 30.0%
!! GTTGGTTTGATGAAAACTTA+AGG + chr4_3:42340356-42340375 Msa0641670:intron 30.0%
GAAAACTTAAGGAATGTGAT+TGG + chr4_3:42340367-42340386 Msa0641670:intron 30.0%
! GAGAAAAAGGTTGTTTCAAT+GGG + chr4_3:42340526-42340545 Msa0641670:intron 30.0%
TTAACTGGTTATTCACTTTC+AGG - chr4_3:42340697-42340716 None:intergenic 30.0%
!!! AAATGTCAGTACTAGTTTTG+AGG + chr4_3:42340738-42340757 Msa0641670:intron 30.0%
!!! TTTTGAGGCTTTTCCAAAAT+AGG + chr4_3:42340753-42340772 Msa0641670:intron 30.0%
GGAAAATCTTAGTAAAAGAG+GGG + chr4_3:42340787-42340806 Msa0641670:intron 30.0%
ATCCAAACAACCGATAAAAT+TGG - chr4_3:42340891-42340910 None:intergenic 30.0%
!! TTTTTACGTGTTACTAGTAC+TGG + chr4_3:42341034-42341053 Msa0641670:intron 30.0%
AAAACAATTCCATGAATTGC+AGG + chr4_3:42341460-42341479 Msa0641670:intron 30.0%
AAACAATTCCATGAATTGCA+GGG + chr4_3:42341461-42341480 Msa0641670:intron 30.0%
TTGTTGAAATTGGTGAAGAA+GGG + chr4_3:42341557-42341576 Msa0641670:CDS 30.0%
TATGATAACACATTATGGTC+TGG + chr4_3:42341593-42341612 Msa0641670:CDS 30.0%
AGGAAATGGAAGATACAATA+AGG + chr4_3:42341639-42341658 Msa0641670:CDS 30.0%
GAATCAACAATCCTTTCTAT+TGG + chr4_3:42341719-42341738 Msa0641670:CDS 30.0%
ATCAACAATCCTTTCTATTG+GGG + chr4_3:42341721-42341740 Msa0641670:CDS 30.0%
! ATTATTACCTGAAGAAGTGC+TGG - chr4_3:42339415-42339434 None:intergenic 35.0%
! CTCAATTAATCTGGTTTCAG+TGG - chr4_3:42339447-42339466 None:intergenic 35.0%
! TTCAATTGTTCGTGCTCTTT+TGG - chr4_3:42339554-42339573 None:intergenic 35.0%
GAGTATAATGAATGTGCCTT+TGG + chr4_3:42339756-42339775 Msa0641670:CDS 35.0%
ATGAATTGTGCTTCATCCAA+AGG - chr4_3:42339775-42339794 None:intergenic 35.0%
TTAGAAATTGGAGTCTTCAC+TGG + chr4_3:42339832-42339851 Msa0641670:CDS 35.0%
! GATAAAGAAGCATATGAGAC+AGG + chr4_3:42340001-42340020 Msa0641670:CDS 35.0%
! ATAATAGTTCTTTTCGGTGG+AGG + chr4_3:42340290-42340309 Msa0641670:intron 35.0%
! TAATAGTTCTTTTCGGTGGA+GGG + chr4_3:42340291-42340310 Msa0641670:intron 35.0%
! AATCAATAGCGAGGTATCAT+AGG + chr4_3:42340320-42340339 Msa0641670:intron 35.0%
TTAAGGAATGTGATTGGAGA+TGG + chr4_3:42340373-42340392 Msa0641670:intron 35.0%
TAAGGAATGTGATTGGAGAT+GGG + chr4_3:42340374-42340393 Msa0641670:intron 35.0%
! ATGGGAAAGAGACGAATTTT+TGG + chr4_3:42340392-42340411 Msa0641670:intron 35.0%
AAATCGTCTTCATTGATCCA+TGG - chr4_3:42340424-42340443 None:intergenic 35.0%
GTTCAACAATCATATCTGCT+TGG - chr4_3:42340500-42340519 None:intergenic 35.0%
GATATGATTGTTGAACGAGT+TGG + chr4_3:42340504-42340523 Msa0641670:intron 35.0%
! GGAGAAAAAGGTTGTTTCAA+TGG + chr4_3:42340525-42340544 Msa0641670:intron 35.0%
! AAAAAGGTTGTTTCAATGGG+AGG + chr4_3:42340529-42340548 Msa0641670:intron 35.0%
AATCTTCTTTGCCTAACCAA+TGG - chr4_3:42340657-42340676 None:intergenic 35.0%
TTGGTTAGGCAAAGAAGATT+CGG + chr4_3:42340657-42340676 Msa0641670:intron 35.0%
! CCTTAGTAGGAATCCTATTT+TGG - chr4_3:42340769-42340788 None:intergenic 35.0%
CCAAAATAGGATTCCTACTA+AGG + chr4_3:42340766-42340785 Msa0641670:intron 35.0%
AACTCTTCTTCTCTATGTGT+TGG + chr4_3:42340818-42340837 Msa0641670:intron 35.0%
!! GTCCAATTTTATCGGTTGTT+TGG + chr4_3:42340886-42340905 Msa0641670:intron 35.0%
CAAACCTGAGAAATAGAAAC+CGG - chr4_3:42340998-42341017 None:intergenic 35.0%
! TTCTATTTCTCAGGTTTGGA+TGG + chr4_3:42341000-42341019 Msa0641670:intron 35.0%
TATCATCCTTTATGTAGCAG+TGG + chr4_3:42341081-42341100 Msa0641670:intron 35.0%
!! ATCATCGTGGCTTTATTGTA+TGG + chr4_3:42341122-42341141 Msa0641670:intron 35.0%
!! TCATCGTGGCTTTATTGTAT+GGG + chr4_3:42341123-42341142 Msa0641670:intron 35.0%
TAGCAATATCGTCTTTGTGT+CGG + chr4_3:42341146-42341165 Msa0641670:intron 35.0%
AAACGAATTAGATGCTCTAG+AGG - chr4_3:42341421-42341440 None:intergenic 35.0%
GTTGTTGAAATTGGTGAAGA+AGG + chr4_3:42341556-42341575 Msa0641670:CDS 35.0%
!!! TGGAGTTTTGAGGATGTTCT+TGG - chr4_3:42339395-42339414 None:intergenic 40.0%
! TTGTTCGTGCTCTTTTGGAT+AGG - chr4_3:42339549-42339568 None:intergenic 40.0%
AATGATACCTTGCCATCAGA+AGG - chr4_3:42339889-42339908 None:intergenic 40.0%
ACTTCTGCCTTCTGAATGAA+GGG - chr4_3:42340031-42340050 None:intergenic 40.0%
AACTTCTGCCTTCTGAATGA+AGG - chr4_3:42340032-42340051 None:intergenic 40.0%
ATCCACAGTGATGCATTATC+AGG + chr4_3:42340070-42340089 Msa0641670:CDS 40.0%
!! CGAATTTTTGGATAGAGCCA+TGG + chr4_3:42340404-42340423 Msa0641670:intron 40.0%
! GTTGAACGAGTTGGAGAAAA+AGG + chr4_3:42340513-42340532 Msa0641670:intron 40.0%
ACAGGAAGATGTTTGGAAGT+GGG + chr4_3:42340600-42340619 Msa0641670:intron 40.0%
TCTTCTTCTCTATGTGTTGG+TGG + chr4_3:42340821-42340840 Msa0641670:intron 40.0%
ATCGGTTGTTTGGATTGAGT+CGG + chr4_3:42340896-42340915 Msa0641670:intron 40.0%
! CGGTTTCTATTTCTCAGGTT+TGG + chr4_3:42340996-42341015 Msa0641670:intron 40.0%
!! TACTAGTACTGGTTCACTCT+TGG + chr4_3:42341045-42341064 Msa0641670:intron 40.0%
AGAGCAAGAGAAATGCTCAA+AGG - chr4_3:42341176-42341195 None:intergenic 40.0%
TTAACACTCATCTTGTGCTG+TGG + chr4_3:42341241-42341260 Msa0641670:intron 40.0%
CAAGATCTACAAGGTCTCAA+CGG - chr4_3:42341277-42341296 None:intergenic 40.0%
TCACGAGCTGTTGTTGAAAT+TGG + chr4_3:42341547-42341566 Msa0641670:CDS 40.0%
TTGAAATTGGTGAAGAAGGG+TGG + chr4_3:42341560-42341579 Msa0641670:CDS 40.0%
ACAATCCTTTCTATTGGGGA+CGG + chr4_3:42341725-42341744 Msa0641670:CDS 40.0%
AGAGTTCTCTAAGCCATCAA+AGG + chr4_3:42341761-42341780 Msa0641670:exon 40.0%
!! GATCAACTTGCTGTTTGCTC+TGG + chr4_3:42339356-42339375 Msa0641670:five_prime_UTR 45.0%
! TTTGCTCTGGACTTGAACCA+TGG + chr4_3:42339369-42339388 Msa0641670:exon 45.0%
TTTGAGGATGTTCTTGGCCA+TGG - chr4_3:42339389-42339408 None:intergenic 45.0%
!!! GAAGAAGTGCTGGAGTTTTG+AGG - chr4_3:42339405-42339424 None:intergenic 45.0%
CAAAACTCCAGCACTTCTTC+AGG + chr4_3:42339405-42339424 Msa0641670:CDS 45.0%
! ATATTTGTTGGGTGTGGCAC+TGG + chr4_3:42339730-42339749 Msa0641670:intron 45.0%
AGGATTGCCCTTCATTCAGA+AGG + chr4_3:42340021-42340040 Msa0641670:CDS 45.0%
! TGCCTGATAATGCATCACTG+TGG - chr4_3:42340075-42340094 None:intergenic 45.0%
GGGAATCGAAATCAATAGCG+AGG + chr4_3:42340311-42340330 Msa0641670:intron 45.0%
! AAGGTTGTTTCAATGGGAGG+AGG + chr4_3:42340532-42340551 Msa0641670:intron 45.0%
GACAGGAAGATGTTTGGAAG+TGG + chr4_3:42340599-42340618 Msa0641670:intron 45.0%
CAGGAAGATGTTTGGAAGTG+GGG + chr4_3:42340601-42340620 Msa0641670:intron 45.0%
AGAGGCGAGTTTCTCAGTTA+AGG + chr4_3:42340624-42340643 Msa0641670:intron 45.0%
CAGTTAAGGCAGCTTACCAT+TGG + chr4_3:42340638-42340657 Msa0641670:intron 45.0%
! AAGGCAGCTTACCATTGGTT+AGG + chr4_3:42340643-42340662 Msa0641670:intron 45.0%
AGGCAAAGAAGATTCGGAAG+TGG + chr4_3:42340663-42340682 Msa0641670:intron 45.0%
CAAAGAAGATTCGGAAGTGG+TGG + chr4_3:42340666-42340685 Msa0641670:intron 45.0%
!! CTCTATGTGTTGGTGGATTG+TGG + chr4_3:42340828-42340847 Msa0641670:intron 45.0%
AGTCCTGTCTGATTGTGCAT+TGG + chr4_3:42340952-42340971 Msa0641670:intron 45.0%
GTCCTGTCTGATTGTGCATT+GGG + chr4_3:42340953-42340972 Msa0641670:intron 45.0%
TCCTGTCTGATTGTGCATTG+GGG + chr4_3:42340954-42340973 Msa0641670:intron 45.0%
!! TGTGCCGGTTTCTATTTCTC+AGG + chr4_3:42340991-42341010 Msa0641670:intron 45.0%
GAGACCTTGTAGATCTTGCT+CGG + chr4_3:42341279-42341298 Msa0641670:intron 45.0%
AGACCTTGTAGATCTTGCTC+GGG + chr4_3:42341280-42341299 Msa0641670:intron 45.0%
TAACCCGAGCAAGATCTACA+AGG - chr4_3:42341286-42341305 None:intergenic 45.0%
CATGTTTGCCCTGCAATTCA+TGG - chr4_3:42341472-42341491 None:intergenic 45.0%
TGCATTTGTGGATGCTGACA+AGG + chr4_3:42341508-42341527 Msa0641670:CDS 45.0%
CATTTCCTCATCCTCAGACA+TGG - chr4_3:42341627-42341646 None:intergenic 45.0%
CATGTCTGAGGATGAGGAAA+TGG + chr4_3:42341625-42341644 Msa0641670:CDS 45.0%
TTACACCGTCCCCAATAGAA+AGG - chr4_3:42341733-42341752 None:intergenic 45.0%
GCTCTTGCTCTTCCTTCTGA+TGG + chr4_3:42339874-42339893 Msa0641670:CDS 50.0%
TGCTCTTCCTTCTGATGGCA+AGG + chr4_3:42339879-42339898 Msa0641670:CDS 50.0%
! ATAGCGAGGTATCATAGGCG+TGG + chr4_3:42340325-42340344 Msa0641670:intron 50.0%
GTTTCAATGGGAGGAGGAGA+TGG + chr4_3:42340538-42340557 Msa0641670:intron 50.0%
TCTGGTGCTTGGAGTTGAGA+AGG + chr4_3:42340561-42340580 Msa0641670:intron 50.0%
CTTGGAGTTGAGAAGGTGGA+GGG + chr4_3:42340568-42340587 Msa0641670:intron 50.0%
GGACAGGACAGGAAGATGTT+TGG + chr4_3:42340593-42340612 Msa0641670:intron 50.0%
AGATGTTTGGAAGTGGGGAG+AGG + chr4_3:42340606-42340625 Msa0641670:intron 50.0%
! AAGATTCGGAAGTGGTGGAG+TGG + chr4_3:42340671-42340690 Msa0641670:intron 50.0%
ACCCCAATGCACAATCAGAC+AGG - chr4_3:42340958-42340977 None:intergenic 50.0%
TCTGATTGTGCATTGGGGTC+TGG + chr4_3:42340959-42340978 Msa0641670:intron 50.0%
ATCGCGCCACTGCTACATAA+AGG - chr4_3:42341090-42341109 None:intergenic 50.0%
! TGGTTCTGTAGCCATGTCTG+AGG + chr4_3:42341613-42341632 Msa0641670:CDS 50.0%
TGTAGCCATGTCTGAGGATG+AGG + chr4_3:42341619-42341638 Msa0641670:CDS 50.0%
AATGGGAGGAGGAGATGGTC+TGG + chr4_3:42340543-42340562 Msa0641670:intron 55.0%
GGTGCTTGGAGTTGAGAAGG+TGG + chr4_3:42340564-42340583 Msa0641670:intron 55.0%
GCTTGGAGTTGAGAAGGTGG+AGG + chr4_3:42340567-42340586 Msa0641670:intron 55.0%
GAGTTGAGAAGGTGGAGGGA+GGG + chr4_3:42340572-42340591 Msa0641670:intron 55.0%
! TGTGCATTGGGGTCTGGTTC+TGG + chr4_3:42340965-42340984 Msa0641670:intron 55.0%
!! TTGTTGGGTGTGGCACTGGC+AGG + chr4_3:42339734-42339753 Msa0641670:intron 60.0%
! GCGAGGTATCATAGGCGTGG+AGG + chr4_3:42340328-42340347 Msa0641670:intron 60.0%
ATAGGCGTGGAGGAGCGAGT+TGG + chr4_3:42340338-42340357 Msa0641670:intron 60.0%
GGAGGAGATGGTCTGGTGCT+TGG + chr4_3:42340550-42340569 Msa0641670:intron 60.0%
GGAGTTGAGAAGGTGGAGGG+AGG + chr4_3:42340571-42340590 Msa0641670:intron 60.0%
!! GTCTGGTTCTGGCTCTGTGC+CGG + chr4_3:42340976-42340995 Msa0641670:intron 60.0%
GAGAAGGTGGAGGGAGGGAC+AGG + chr4_3:42340577-42340596 Msa0641670:intron 65.0%
GGTGGAGGGAGGGACAGGAC+AGG + chr4_3:42340582-42340601 Msa0641670:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 42339322 42341832 42339322 ID=Msa0641670;Name=Msa0641670
chr4_3 mRNA 42339322 42341832 42339322 ID=Msa0641670-mRNA-1;Parent=Msa0641670;Name=Msa0641670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=66|1|1|1|0.75|1|5|60|229
chr4_3 exon 42339322 42339426 42339322 ID=Msa0641670-mRNA-1:exon:9518;Parent=Msa0641670-mRNA-1
chr4_3 exon 42339527 42339612 42339527 ID=Msa0641670-mRNA-1:exon:9519;Parent=Msa0641670-mRNA-1
chr4_3 exon 42339756 42339900 42339756 ID=Msa0641670-mRNA-1:exon:9520;Parent=Msa0641670-mRNA-1
chr4_3 exon 42339983 42340111 42339983 ID=Msa0641670-mRNA-1:exon:9521;Parent=Msa0641670-mRNA-1
chr4_3 exon 42341482 42341832 42341482 ID=Msa0641670-mRNA-1:exon:9522;Parent=Msa0641670-mRNA-1
chr4_3 five_prime_UTR 42339322 42339387 42339322 ID=Msa0641670-mRNA-1:five_prime_utr;Parent=Msa0641670-mRNA-1
chr4_3 CDS 42339388 42339426 42339388 ID=Msa0641670-mRNA-1:cds;Parent=Msa0641670-mRNA-1
chr4_3 CDS 42339527 42339612 42339527 ID=Msa0641670-mRNA-1:cds;Parent=Msa0641670-mRNA-1
chr4_3 CDS 42339756 42339900 42339756 ID=Msa0641670-mRNA-1:cds;Parent=Msa0641670-mRNA-1
chr4_3 CDS 42339983 42340111 42339983 ID=Msa0641670-mRNA-1:cds;Parent=Msa0641670-mRNA-1
chr4_3 CDS 42341482 42341772 42341482 ID=Msa0641670-mRNA-1:cds;Parent=Msa0641670-mRNA-1
chr4_3 three_prime_UTR 42341773 42341832 42341773 ID=Msa0641670-mRNA-1:three_prime_utr;Parent=Msa0641670-mRNA-1
Gene Sequence

>Msa0641670

ATGGCCAAGAACATCCTCAAAACTCCAGCACTTCTTCAGTATATTCTTGAAACAAGTTCCTATCCAAAAGAGCACGAACAATTGAAACAACTTAGAGAAACAACAATTCAGAAGTATGGGAAATTGAGTATAATGAATGTGCCTTTGGATGAAGCACAATTCATATCTATGCTTCTTAAAATTATGAATGCGAAAAAAACATTAGAAATTGGAGTCTTCACTGGTTATTCACTTCTTGCAACAGCTCTTGCTCTTCCTTCTGATGGCAAGGTAATAGGAATTGATATGGATAAAGAAGCATATGAGACAGGATTGCCCTTCATTCAGAAGGCAGAAGTTGAGCACAAAATTGAATTTATCCACAGTGATGCATTATCAGGCATCATTCGTCTTATTGATGGCAAACATGAAGAATCATTTGATTATGCATTTGTGGATGCTGACAAGGAAAACTTCACAAAGTATCACGAGCTGTTGTTGAAATTGGTGAAGAAGGGTGGAATAATTGCATATGATAACACATTATGGTCTGGTTCTGTAGCCATGTCTGAGGATGAGGAAATGGAAGATACAATAAGGCCAAAAAGAAAAGTTGCAATTGAATTCAACAACTTTATAGCAAATGATACTCGCATTGAATCAACAATCCTTTCTATTGGGGACGGTGTAACTCTCTGCAGAGTTCTCTAA

Protein sequence

>Msa0641670

MAKNILKTPALLQYILETSSYPKEHEQLKQLRETTIQKYGKLSIMNVPLDEAQFISMLLKIMNAKKTLEIGVFTGYSLLATALALPSDGKVIGIDMDKEAYETGLPFIQKAEVEHKIEFIHSDALSGIIRLIDGKHEESFDYAFVDADKENFTKYHELLLKLVKKGGIIAYDNTLWSGSVAMSEDEEMEDTIRPKRKVAIEFNNFIANDTRIESTILSIGDGVTLCRVL*