Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563090 | XP_013446515.1 | 92.200 | 641 | 19 | 3 | 1 | 610 | 1 | 641 | 0.0 | 1191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563090 | sp|P33731|SRP72_CANLF | 31.300 | 623 | 386 | 16 | 21 | 610 | 14 | 627 | 1.17e-71 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563090 | A0A072TSZ4 | 92.200 | 641 | 19 | 3 | 1 | 610 | 1 | 641 | 0.0 | 1191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035730 | Msa0563090 | 0.807526 | 4.841879e-50 | -8.615850e-47 |
| Msa0126160 | Msa0563090 | 0.807099 | 5.963621e-50 | -8.615850e-47 |
| Msa0173250 | Msa0563090 | 0.813647 | 2.302527e-51 | -8.615850e-47 |
| Msa0385310 | Msa0563090 | 0.808832 | 2.551376e-50 | -8.615850e-47 |
| Msa0389690 | Msa0563090 | 0.822301 | 2.549246e-53 | -8.615850e-47 |
| Msa0428210 | Msa0563090 | 0.822812 | 1.938791e-53 | -8.615850e-47 |
| Msa0430230 | Msa0563090 | 0.818408 | 1.991351e-52 | -8.615850e-47 |
| Msa0276860 | Msa0563090 | 0.803173 | 3.954884e-49 | -8.615850e-47 |
| Msa0508180 | Msa0563090 | 0.811385 | 7.188975e-51 | -8.615850e-47 |
| Msa0518590 | Msa0563090 | 0.825611 | 4.266216e-54 | -8.615850e-47 |
| Msa0519150 | Msa0563090 | 0.803245 | 3.821869e-49 | -8.615850e-47 |
| Msa0523110 | Msa0563090 | 0.811874 | 5.628751e-51 | -8.615850e-47 |
| Msa0525880 | Msa0563090 | 0.843148 | 1.673894e-58 | -8.615850e-47 |
| Msa0563090 | Msa0610290 | 0.809429 | 1.900553e-50 | -8.615850e-47 |
| Msa0563090 | Msa0656320 | 0.842357 | 2.716585e-58 | -8.615850e-47 |
| Msa0563090 | Msa0689830 | 0.802013 | 6.863253e-49 | -8.615850e-47 |
| Msa0563090 | Msa0700120 | 0.860487 | 1.995540e-63 | -8.615850e-47 |
| Msa0563090 | Msa1070890 | 0.820112 | 8.147694e-53 | -8.615850e-47 |
| Msa0563090 | Msa1383820 | 0.802244 | 6.151102e-49 | -8.615850e-47 |
| Msa0563090 | Msa1396100 | 0.806835 | 6.783537e-50 | -8.615850e-47 |
| Msa0563090 | Msa1400850 | 0.806076 | 9.802955e-50 | -8.615850e-47 |
| Msa0563090 | Msa1402010 | 0.820195 | 7.798254e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563090 | MtrunA17_Chr8g0376921 | 92.200 | 641 | 19 | 3 | 1 | 610 | 1 | 641 | 0.0 | 1191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563090 | AT1G67680.1 | 59.513 | 657 | 209 | 9 | 1 | 610 | 1 | 647 | 0.0 | 709 |
| Msa0563090 | AT1G67650.1 | 54.474 | 637 | 241 | 8 | 1 | 599 | 1 | 626 | 0.0 | 676 |
Find 187 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTGGGAAGCCACCTTTC+TGG | 0.144780 | 4_1:-63381687 | None:intergenic |
| AATCTCAAAACCATCAATTT+TGG | 0.164599 | 4_1:+63382032 | Msa0563090:three_prime_UTR |
| GGTGGAGGACCTGGGTTTGC+AGG | 0.208255 | 4_1:-63381660 | None:intergenic |
| AGGATGGCTGGATTCATTTC+GGG | 0.250936 | 4_1:+63379604 | Msa0563090:CDS |
| GGGAAGCAATATATGCAAAT+AGG | 0.256001 | 4_1:+63380682 | Msa0563090:CDS |
| GAATGAAGCTTTGGAGTCTT+TGG | 0.268189 | 4_1:+63379406 | Msa0563090:CDS |
| GAAGTTGCCTGGTTTGATTT+TGG | 0.276240 | 4_1:-63381828 | None:intergenic |
| TCTGGATCTGGTGGAGGACC+TGG | 0.280134 | 4_1:-63381669 | None:intergenic |
| GACAGCTTGGAGCGTACTTC+TGG | 0.283282 | 4_1:+63381516 | Msa0563090:CDS |
| TCTCGCATAAACGGCGATTC+AGG | 0.287212 | 4_1:-63377963 | None:intergenic |
| GGCTGCGACTGCGTCGGTTT+GGG | 0.291056 | 4_1:-63378068 | None:intergenic |
| ATCATTGATTGGCAGCTTCT+TGG | 0.293542 | 4_1:+63380445 | Msa0563090:intron |
| AAGAAGTCTAGGAAGTAATA+AGG | 0.294799 | 4_1:+63381922 | Msa0563090:three_prime_UTR |
| AAGGATGGCTGGATTCATTT+CGG | 0.297450 | 4_1:+63379603 | Msa0563090:CDS |
| GTCTCCTATTGCTGTACAAT+TGG | 0.300746 | 4_1:+63380335 | Msa0563090:CDS |
| AAATGATGAAACTATGCTTT+TGG | 0.305228 | 4_1:+63379442 | Msa0563090:CDS |
| AGCTCGTTTGTCCTTCCTCT+TGG | 0.312324 | 4_1:-63381730 | None:intergenic |
| GCTCAGGTTGCGGCGGCGGC+TGG | 0.317288 | 4_1:+63381105 | Msa0563090:CDS |
| TGCCCGTCTTGATGTTATTA+AGG | 0.317488 | 4_1:+63381437 | Msa0563090:CDS |
| CTTTCCTTCGTCGTTCGTTT+CGG | 0.317730 | 4_1:-63381577 | None:intergenic |
| GGAAGCCACCTTTCTGGATC+TGG | 0.323233 | 4_1:-63381681 | None:intergenic |
| TTGAATCGAACCAAAATTGA+TGG | 0.329514 | 4_1:-63382042 | None:intergenic |
| GACTGCGTCGGTTTGGGCTT+CGG | 0.340662 | 4_1:-63378062 | None:intergenic |
| CCCAGGTTCTTTACTTAGCC+AGG | 0.341545 | 4_1:+63381082 | Msa0563090:CDS |
| TTGAACTCGCATAGTGTATA+TGG | 0.351210 | 4_1:-63382011 | None:intergenic |
| GATATACTGGCACAGTTTGC+TGG | 0.353626 | 4_1:+63381042 | Msa0563090:CDS |
| TCATTGATTGGCAGCTTCTT+GGG | 0.354425 | 4_1:+63380446 | Msa0563090:intron |
| AGCAACAAGCAGCTTTGAAT+TGG | 0.358344 | 4_1:+63379631 | Msa0563090:CDS |
| CTTCAATCGTCTCGCATAAA+CGG | 0.360163 | 4_1:-63377972 | None:intergenic |
| CAGGGCTCAGGTTGCGGCGG+CGG | 0.362726 | 4_1:+63381101 | Msa0563090:CDS |
| AATTTCCAACATATCAATCT+TGG | 0.370710 | 4_1:-63379534 | None:intergenic |
| AGGCTGCGACTGCGTCGGTT+TGG | 0.372921 | 4_1:-63378069 | None:intergenic |
| GTTTGGGCTTCGGAGCCATT+AGG | 0.374566 | 4_1:-63378052 | None:intergenic |
| TTTCGGCAATTCAATCTTCT+CGG | 0.374802 | 4_1:+63378361 | Msa0563090:CDS |
| AAATGAGTATATTTGTCTAT+TGG | 0.377516 | 4_1:+63382067 | Msa0563090:three_prime_UTR |
| AAACAAGTTGAATGAAGCTT+TGG | 0.382642 | 4_1:+63379397 | Msa0563090:CDS |
| TTCTGTTGCTGCCTTAGTTA+TGG | 0.385921 | 4_1:+63379559 | Msa0563090:CDS |
| GCCGGCATGTGTTGAATATC+TGG | 0.386185 | 4_1:-63381165 | None:intergenic |
| TTTGCAGGGTTAAACCCTTT+AGG | 0.386343 | 4_1:-63381645 | None:intergenic |
| TCGATTTGGTGATGCTGTTT+CGG | 0.392201 | 4_1:+63378344 | Msa0563090:CDS |
| AATACTGGTACAACACTATC+AGG | 0.392818 | 4_1:-63380970 | None:intergenic |
| CTTAGCCAGGGCTCAGGTTG+CGG | 0.398955 | 4_1:+63381095 | Msa0563090:CDS |
| AGGGCAGCTTGCAGCAATAC+TGG | 0.399705 | 4_1:-63380985 | None:intergenic |
| CTGGATCTGGTGGAGGACCT+GGG | 0.400436 | 4_1:-63381668 | None:intergenic |
| TAGCCCAATTGTACAGCAAT+AGG | 0.402117 | 4_1:-63380339 | None:intergenic |
| TTTCCACAGCTGAAACCTAA+TGG | 0.402997 | 4_1:+63378037 | Msa0563090:exon |
| GCTCGTTTGTCCTTCCTCTT+GGG | 0.405630 | 4_1:-63381729 | None:intergenic |
| AAAGACCTTGCCTGGATTGA+AGG | 0.409184 | 4_1:+63381482 | Msa0563090:CDS |
| CCTAGACTTCTTTCTAGACT+TGG | 0.410339 | 4_1:-63381911 | None:intergenic |
| AAACGAGCTGCTCAAGTTAG+AGG | 0.410977 | 4_1:+63381744 | Msa0563090:CDS |
| GGAAGCAATATATGCAAATA+GGG | 0.413110 | 4_1:+63380683 | Msa0563090:CDS |
| GTTGCTGCCTTAGTTATGGC+AGG | 0.413143 | 4_1:+63379563 | Msa0563090:CDS |
| TGAAACTTTCAGCAAAAGAA+AGG | 0.416899 | 4_1:+63380661 | Msa0563090:CDS |
| ATCTGTAAGTTTAACGGCAT+TGG | 0.418962 | 4_1:-63378159 | None:intergenic |
| GAAGCTTCTGGTAGATATCC+AGG | 0.423941 | 4_1:-63379505 | None:intergenic |
| CGCCGCCGCAACCTGAGCCC+TGG | 0.424323 | 4_1:-63381100 | None:intergenic |
| TGGAAGGGCTGAGGATATAC+TGG | 0.426397 | 4_1:+63381029 | Msa0563090:CDS |
| GGACATGATTAAACGAGATA+TGG | 0.428299 | 4_1:+63380498 | Msa0563090:CDS |
| TCTCCTATTGCTGTACAATT+GGG | 0.428740 | 4_1:+63380336 | Msa0563090:CDS |
| AAAGTCCAAGATTGATATGT+TGG | 0.431327 | 4_1:+63379529 | Msa0563090:CDS |
| AGAGCCTGATGGAAGATAAC+TGG | 0.433802 | 4_1:+63380286 | Msa0563090:CDS |
| ATTGCTGCAAGCTGCCCTCT+TGG | 0.433939 | 4_1:+63380990 | Msa0563090:CDS |
| TGCACTCTGAGTAGCACCTT+TGG | 0.437827 | 4_1:-63381852 | None:intergenic |
| TGAGGAGCTCGTTAAAAGTC+AGG | 0.440388 | 4_1:+63381377 | Msa0563090:CDS |
| TGGTATCTTTGTTAGAGAAT+CGG | 0.447976 | 4_1:-63381145 | None:intergenic |
| CTGCTTGTTCTTTAATTCAA+AGG | 0.451905 | 4_1:+63379663 | Msa0563090:CDS |
| ACTCTGATCTGTAAGTTTAA+CGG | 0.452703 | 4_1:-63378165 | None:intergenic |
| CAAAGCTTTCGCCTAGCTCA+TGG | 0.456121 | 4_1:+63380630 | Msa0563090:CDS |
| TGCTGTAGTTAGAGATAAGC+AGG | 0.456566 | 4_1:+63381776 | Msa0563090:CDS |
| CTCGCATAAACGGCGATTCA+GGG | 0.457583 | 4_1:-63377962 | None:intergenic |
| CAAGTGTTAATGTGCGTGTT+TGG | 0.457889 | 4_1:+63382093 | Msa0563090:three_prime_UTR |
| AGGCTGCCTCATTCAAGTTA+AGG | 0.458642 | 4_1:+63381322 | Msa0563090:CDS |
| GTGGAGGACCTGGGTTTGCA+GGG | 0.460700 | 4_1:-63381659 | None:intergenic |
| TCTAGACTTGGATGAAGGCT+TGG | 0.461224 | 4_1:-63381899 | None:intergenic |
| TTGATCAAAGATGATCGATT+TGG | 0.465225 | 4_1:+63378330 | Msa0563090:CDS |
| AAAAGTTGACCTCTCTCGCT+TGG | 0.466137 | 4_1:-63381703 | None:intergenic |
| TTCTTTCTAGACTTGGATGA+AGG | 0.466315 | 4_1:-63381904 | None:intergenic |
| AAGAAACTAAAGACCTTGCC+TGG | 0.467453 | 4_1:+63381474 | Msa0563090:CDS |
| ATCTGAAGTTCAAGGATGGC+TGG | 0.467862 | 4_1:+63379592 | Msa0563090:CDS |
| CTTTCGCCTAGCTCATGGAT+TGG | 0.471476 | 4_1:+63380635 | Msa0563090:CDS |
| GCACCTTTGGAGAAGTTGCC+TGG | 0.473536 | 4_1:-63381839 | None:intergenic |
| ATTGTTCTAACTGCTTAATG+AGG | 0.476672 | 4_1:-63382170 | None:intergenic |
| TGCTCAAGTTAGAGGCTCAC+AGG | 0.477514 | 4_1:+63381752 | Msa0563090:CDS |
| GAAAGCCAAGGTATCCTAAA+GGG | 0.478236 | 4_1:+63381631 | Msa0563090:CDS |
| TAAAGAACCTGGGACTTCTC+AGG | 0.480535 | 4_1:-63381072 | None:intergenic |
| ACAATTGGGCTATGTCCAAC+AGG | 0.482796 | 4_1:+63380350 | Msa0563090:CDS |
| CGGAGTGCGTCTTCATCGCC+AGG | 0.485851 | 4_1:-63378291 | None:intergenic |
| GAAGCATAGAAGCGCTAGTT+GGG | 0.486962 | 4_1:+63381400 | Msa0563090:CDS |
| TCTTTACTTAGCCAGGGCTC+AGG | 0.490874 | 4_1:+63381089 | Msa0563090:CDS |
| CAGGCCAGTTATCTTCCATC+AGG | 0.491778 | 4_1:-63380290 | None:intergenic |
| AAAGTTGACCTCTCTCGCTT+GGG | 0.493251 | 4_1:-63381702 | None:intergenic |
| AGCCACCTTTCTGGATCTGG+TGG | 0.495160 | 4_1:-63381678 | None:intergenic |
| TCTGGAGTTAAACAAGTTGA+GGG | 0.499079 | 4_1:+63381534 | Msa0563090:CDS |
| GAAACTTTCAGCAAAAGAAA+GGG | 0.499900 | 4_1:+63380662 | Msa0563090:CDS |
| TCTTCGAGTGGAGGTGGAGC+GGG | 0.502009 | 4_1:-63378092 | None:intergenic |
| TTCTGGAGTTAAACAAGTTG+AGG | 0.502597 | 4_1:+63381533 | Msa0563090:CDS |
| ATGAAGGCTTGGATGAGGCT+TGG | 0.504447 | 4_1:-63381888 | None:intergenic |
| CCAAGTCTAGAAAGAAGTCT+AGG | 0.505506 | 4_1:+63381911 | Msa0563090:exon |
| CTCAGCAACAACCACTGTTA+CGG | 0.506217 | 4_1:+63378001 | Msa0563090:five_prime_UTR |
| TTAAACCCTTTAGGATACCT+TGG | 0.508195 | 4_1:-63381636 | None:intergenic |
| CACCTTTCTGGATCTGGTGG+AGG | 0.508999 | 4_1:-63381675 | None:intergenic |
| TGATCTCCCTGCCATAACTA+AGG | 0.509736 | 4_1:-63379570 | None:intergenic |
| TTGCTGCTTTCAATTACTGA+GGG | 0.509780 | 4_1:+63381987 | Msa0563090:three_prime_UTR |
| CGTAACAGTGGTTGTTGCTG+AGG | 0.511235 | 4_1:-63378000 | None:intergenic |
| AGATGCTATTGAAGCTTATG+TGG | 0.514106 | 4_1:+63380477 | Msa0563090:CDS |
| CATTGGTGAATGCGGAAGCT+TGG | 0.514363 | 4_1:-63378142 | None:intergenic |
| AATAGATCTTCGAGTGGAGG+TGG | 0.517073 | 4_1:-63378098 | None:intergenic |
| GGGAATTGATGTGGACAGCT+TGG | 0.519634 | 4_1:+63381503 | Msa0563090:CDS |
| ACACTATCAGGAAACATGTC+TGG | 0.519719 | 4_1:-63380958 | None:intergenic |
| CCAGGTTCTTTACTTAGCCA+GGG | 0.523348 | 4_1:+63381083 | Msa0563090:CDS |
| CTTGGATGAAGGCTTGGATG+AGG | 0.523409 | 4_1:-63381893 | None:intergenic |
| GGAAGCATAGAAGCGCTAGT+TGG | 0.523436 | 4_1:+63381399 | Msa0563090:CDS |
| ACAAGGGTGGCAACAGTAGC+CGG | 0.524474 | 4_1:-63381183 | None:intergenic |
| AGCTGCACCCTCAACGTCGT+TGG | 0.527024 | 4_1:-63381223 | None:intergenic |
| ATCTTCTCGGTCTCCTCCTG+AGG | 0.529120 | 4_1:+63378374 | Msa0563090:CDS |
| GAACGAGCCAACGACGTTGA+GGG | 0.529678 | 4_1:+63381216 | Msa0563090:CDS |
| AGAGAATCGGCTGCAATATG+TGG | 0.533632 | 4_1:-63381132 | None:intergenic |
| AGAAAGCCAAGGTATCCTAA+AGG | 0.536400 | 4_1:+63381630 | Msa0563090:CDS |
| TTGGATGTGTTTGTTGAGAG+TGG | 0.536512 | 4_1:-63378123 | None:intergenic |
| ACATCAATTCCCTTCAATCC+AGG | 0.536875 | 4_1:-63381492 | None:intergenic |
| TCCATGCCTTAACTTGAATG+AGG | 0.536971 | 4_1:-63381328 | None:intergenic |
| GTTAGAGATAAGCAGGAAGC+TGG | 0.537836 | 4_1:+63381783 | Msa0563090:CDS |
| TTGGTTAGAGAGAACAAAGC+TGG | 0.538133 | 4_1:+63381009 | Msa0563090:CDS |
| CATTCAAGTTAAGGCATGGA+AGG | 0.544217 | 4_1:+63381331 | Msa0563090:CDS |
| CCCTGGCTAAGTAAAGAACC+TGG | 0.544789 | 4_1:-63381083 | None:intergenic |
| GCATGCTGCTAAACTCTATG+AGG | 0.544889 | 4_1:+63381359 | Msa0563090:CDS |
| AACTGCAATGGACGATTCAT+CGG | 0.545482 | 4_1:-63380521 | None:intergenic |
| AGAACGAGCCAACGACGTTG+AGG | 0.546494 | 4_1:+63381215 | Msa0563090:CDS |
| GAACAAAGCTGGAAGGGCTG+AGG | 0.552318 | 4_1:+63381020 | Msa0563090:CDS |
| TTGCTGCCTTAGTTATGGCA+GGG | 0.553077 | 4_1:+63379564 | Msa0563090:CDS |
| GCGGGAGGCTGCGACTGCGT+CGG | 0.553576 | 4_1:-63378074 | None:intergenic |
| GCCTCATTCAAGTTAAGGCA+TGG | 0.556079 | 4_1:+63381327 | Msa0563090:CDS |
| AAGACCTTGCCTGGATTGAA+GGG | 0.556211 | 4_1:+63381483 | Msa0563090:CDS |
| TTGTTCTAACTGCTTAATGA+GGG | 0.556776 | 4_1:-63382169 | None:intergenic |
| GTTGCTGCTTTCAATTACTG+AGG | 0.557540 | 4_1:+63381986 | Msa0563090:three_prime_UTR |
| GTAACAGTGGTTGTTGCTGA+GGG | 0.557553 | 4_1:-63377999 | None:intergenic |
| GCAGTTCTCGCAATTGCACC+TGG | 0.562226 | 4_1:+63378273 | Msa0563090:intron |
| TCAAGTCCAATCCATGAGCT+AGG | 0.562856 | 4_1:-63380641 | None:intergenic |
| TGCCTTAATAACATCAAGAC+GGG | 0.570587 | 4_1:-63381439 | None:intergenic |
| TCGAGTGGAGGTGGAGCGGG+AGG | 0.571792 | 4_1:-63378089 | None:intergenic |
| ATTATTGACTGCAACTGCAA+TGG | 0.572155 | 4_1:-63380533 | None:intergenic |
| ATAGTCTGAAGAAACTTGAT+CGG | 0.576762 | 4_1:+63380589 | Msa0563090:intron |
| GTTGAGGGTCCTCTTCATGC+AGG | 0.576924 | 4_1:+63381549 | Msa0563090:CDS |
| TCGCATAAACGGCGATTCAG+GGG | 0.577189 | 4_1:-63377961 | None:intergenic |
| GTCCTCCACCAGATCCAGAA+AGG | 0.583333 | 4_1:+63381673 | Msa0563090:CDS |
| GGGAGATCATCTGAAGTTCA+AGG | 0.584389 | 4_1:+63379584 | Msa0563090:CDS |
| GCTTAATATTATAATGCAAG+AGG | 0.584885 | 4_1:+63381302 | Msa0563090:CDS |
| GGTGGCTTCCCAAGCGAGAG+AGG | 0.586065 | 4_1:+63381694 | Msa0563090:CDS |
| TAGAGAGAACAAAGCTGGAA+GGG | 0.591318 | 4_1:+63381014 | Msa0563090:CDS |
| TTGATTCTGCAACCAAGTGG+TGG | 0.591734 | 4_1:+63381253 | Msa0563090:CDS |
| ATCTTCGAGTGGAGGTGGAG+CGG | 0.593310 | 4_1:-63378093 | None:intergenic |
| ACCAGATATTCAACACATGC+CGG | 0.597220 | 4_1:+63381164 | Msa0563090:CDS |
| AAAGTTGCCTGAGAAGTCCC+AGG | 0.599008 | 4_1:+63381065 | Msa0563090:CDS |
| TTTAACGGCATTGGTGAATG+CGG | 0.600801 | 4_1:-63378150 | None:intergenic |
| GAGCCATTAGGTTTCAGCTG+TGG | 0.603914 | 4_1:-63378040 | None:intergenic |
| AGCCAGGGCTCAGGTTGCGG+CGG | 0.605720 | 4_1:+63381098 | Msa0563090:CDS |
| GGGTTTAACCCTGCAAACCC+AGG | 0.606815 | 4_1:+63381651 | Msa0563090:CDS |
| TTAGAGAGAACAAAGCTGGA+AGG | 0.608924 | 4_1:+63381013 | Msa0563090:CDS |
| CTGCCTTAATAACATCAAGA+CGG | 0.615547 | 4_1:-63381440 | None:intergenic |
| AAACCAGGCAACTTCTCCAA+AGG | 0.618084 | 4_1:+63381836 | Msa0563090:CDS |
| GAGAATCGGCTGCAATATGT+GGG | 0.621190 | 4_1:-63381131 | None:intergenic |
| CATAGCATTAGACCACCACT+TGG | 0.621895 | 4_1:-63381265 | None:intergenic |
| TCGGCAACACCTGCATGAAG+AGG | 0.622400 | 4_1:-63381558 | None:intergenic |
| AAACCACATATCTTCCACTT+CGG | 0.624007 | 4_1:+63377922 | None:intergenic |
| AATTGGTCAAGAGAGCCTGA+TGG | 0.624372 | 4_1:+63380275 | Msa0563090:CDS |
| AAAAGAGAAAGAGAAAGCCA+AGG | 0.626179 | 4_1:+63381619 | Msa0563090:CDS |
| TTTGTTCTCTCTAACCAAGA+GGG | 0.627104 | 4_1:-63381004 | None:intergenic |
| TGTTCTAACTGCTTAATGAG+GGG | 0.627140 | 4_1:-63382168 | None:intergenic |
| TGCTTGATTCTGCAACCAAG+TGG | 0.627939 | 4_1:+63381250 | Msa0563090:CDS |
| GATCATCTGAAGTTCAAGGA+TGG | 0.631439 | 4_1:+63379588 | Msa0563090:CDS |
| TTCCAATCCAAAATCAAACC+AGG | 0.634307 | 4_1:+63381821 | Msa0563090:CDS |
| TGGATTGAAGGGAATTGATG+TGG | 0.636123 | 4_1:+63381494 | Msa0563090:CDS |
| ATTCAAGTTAAGGCATGGAA+GGG | 0.638452 | 4_1:+63381332 | Msa0563090:CDS |
| GCTCAAGTTAGAGGCTCACA+GGG | 0.642165 | 4_1:+63381753 | Msa0563090:CDS |
| GAGGAGCTCGTTAAAAGTCA+GGG | 0.645289 | 4_1:+63381378 | Msa0563090:CDS |
| GTGAATAGATCTTCGAGTGG+AGG | 0.646165 | 4_1:-63378101 | None:intergenic |
| CCTGGCTAAGTAAAGAACCT+GGG | 0.646230 | 4_1:-63381082 | None:intergenic |
| AGAATAGAGAAACGCCGAAG+TGG | 0.648464 | 4_1:-63377936 | None:intergenic |
| AATTCCCTTCAATCCAGGCA+AGG | 0.648744 | 4_1:-63381487 | None:intergenic |
| CTCCACCAGATCCAGAAAGG+TGG | 0.653977 | 4_1:+63381676 | Msa0563090:CDS |
| CTTTGTTCTCTCTAACCAAG+AGG | 0.654169 | 4_1:-63381005 | None:intergenic |
| AATCAGTATCACCGTAACAG+TGG | 0.667307 | 4_1:-63378012 | None:intergenic |
| GTGGTCTAATGCTATGACTG+AGG | 0.668030 | 4_1:+63381272 | Msa0563090:CDS |
| TCAACGCAACGATCTTGCAT+CGG | 0.668802 | 4_1:-63378311 | None:intergenic |
| AATCGGCTGCAATATGTGGG+TGG | 0.683879 | 4_1:-63381128 | None:intergenic |
| GTGGTGAATAGATCTTCGAG+TGG | 0.684779 | 4_1:-63378104 | None:intergenic |
| GTTGCCGAAACGAACGACGA+AGG | 0.686534 | 4_1:+63381573 | Msa0563090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATTATTATTATA+TGG | + | chr4_1:63380893-63380912 | Msa0563090:intron | 0.0% |
| !! | TTGCTTATTATATTTATATA+AGG | + | chr4_1:63378521-63378540 | Msa0563090:intron | 10.0% |
| !! | ATATAAATCATTTGTATATA+CGG | + | chr4_1:63379086-63379105 | Msa0563090:intron | 10.0% |
| !! | ATATTATATATGTATATACA+GGG | - | chr4_1:63379251-63379270 | None:intergenic | 10.0% |
| !! | AAATAAATTTATGACTTAAT+AGG | - | chr4_1:63380200-63380219 | None:intergenic | 10.0% |
| !! | ATCAATGAATTGAAATTAAA+AGG | - | chr4_1:63378211-63378230 | None:intergenic | 15.0% |
| !!! | AATTTAAAAGTTTTAACCAA+CGG | + | chr4_1:63378617-63378636 | Msa0563090:intron | 15.0% |
| !! | AATGGTTAATATTATAAACA+TGG | - | chr4_1:63379146-63379165 | None:intergenic | 15.0% |
| !! | CATATTATATATGTATATAC+AGG | - | chr4_1:63379252-63379271 | None:intergenic | 15.0% |
| !!! | TTACTTTGTTGTTTTTAAAT+AGG | + | chr4_1:63379355-63379374 | Msa0563090:intron | 15.0% |
| !!! | AAAATATCTGAAGTAAATTT+GGG | - | chr4_1:63379769-63379788 | None:intergenic | 15.0% |
| !!! | TATATTTTTTCTATCAGAAT+TGG | + | chr4_1:63380258-63380277 | Msa0563090:intron | 15.0% |
| !! | TTAAAAAAATGAAAATCCTC+AGG | - | chr4_1:63378393-63378412 | None:intergenic | 20.0% |
| !!! | TGAGGATTTTCATTTTTTTA+AGG | + | chr4_1:63378392-63378411 | Msa0563090:CDS | 20.0% |
| !! | AATATAGTTTATGACAAAAC+AGG | - | chr4_1:63378660-63378679 | None:intergenic | 20.0% |
| !! | TTATTCATCGAATTATGAAA+TGG | + | chr4_1:63378815-63378834 | Msa0563090:intron | 20.0% |
| !!! | ACAATGTAACATTTTTTACA+CGG | - | chr4_1:63378935-63378954 | None:intergenic | 20.0% |
| !! | ACAAAGTAAAAAATAATCGA+TGG | - | chr4_1:63379344-63379363 | None:intergenic | 20.0% |
| !!! | GAAAATATCTGAAGTAAATT+TGG | - | chr4_1:63379770-63379789 | None:intergenic | 20.0% |
| !!! | ATTTACTTCAGATATTTTCA+TGG | + | chr4_1:63379771-63379790 | Msa0563090:intron | 20.0% |
| !!! | TTTACTTCAGATATTTTCAT+GGG | + | chr4_1:63379772-63379791 | Msa0563090:intron | 20.0% |
| !! | ATTGAATATTTGAATAGTGT+TGG | - | chr4_1:63379842-63379861 | None:intergenic | 20.0% |
| !! | TAAGTCATAAATTTATTTCC+TGG | + | chr4_1:63380202-63380221 | Msa0563090:intron | 20.0% |
| !! | AAGTCATAAATTTATTTCCT+GGG | + | chr4_1:63380203-63380222 | Msa0563090:intron | 20.0% |
| !!! | AGTTTTAATCAATCATTGAT+TGG | + | chr4_1:63380434-63380453 | Msa0563090:intron | 20.0% |
| !! | AAATGAGTATATTTGTCTAT+TGG | + | chr4_1:63382067-63382086 | Msa0563090:three_prime_UTR | 20.0% |
| !! | CAAAATAAGCCTTATACAAA+CGG | + | chr4_1:63378741-63378760 | Msa0563090:intron | 25.0% |
| !! | AAAATAAGCCTTATACAAAC+GGG | + | chr4_1:63378742-63378761 | Msa0563090:intron | 25.0% |
| ! | GTGTTAAAAAATAGACATAG+AGG | - | chr4_1:63379173-63379192 | None:intergenic | 25.0% |
| !! | AAATGATGAAACTATGCTTT+TGG | + | chr4_1:63379442-63379461 | Msa0563090:CDS | 25.0% |
| ! | AATTTCCAACATATCAATCT+TGG | - | chr4_1:63379537-63379556 | None:intergenic | 25.0% |
| !!! | TGATGTGATATTTTGATTGT+GGG | + | chr4_1:63379730-63379749 | Msa0563090:intron | 25.0% |
| ! | AAGTTCCTTATTGTAAAACA+TGG | + | chr4_1:63380108-63380127 | Msa0563090:intron | 25.0% |
| !! | TTTGTCCATGTTTTACAATA+AGG | - | chr4_1:63380116-63380135 | None:intergenic | 25.0% |
| !! | TCATTTTCTATATCTTCATC+AGG | - | chr4_1:63380312-63380331 | None:intergenic | 25.0% |
| ! | GCTTAATATTATAATGCAAG+AGG | + | chr4_1:63381302-63381321 | Msa0563090:CDS | 25.0% |
| !! | AATCTCAAAACCATCAATTT+TGG | + | chr4_1:63382032-63382051 | Msa0563090:three_prime_UTR | 25.0% |
| ACTCTGATCTGTAAGTTTAA+CGG | - | chr4_1:63378168-63378187 | None:intergenic | 30.0% | |
| TTGATCAAAGATGATCGATT+TGG | + | chr4_1:63378330-63378349 | Msa0563090:CDS | 30.0% | |
| AAAAAATGAAAATCCTCAGG+AGG | - | chr4_1:63378390-63378409 | None:intergenic | 30.0% | |
| ATATTTATATAAGGCCCGTT+CGG | + | chr4_1:63378530-63378549 | Msa0563090:intron | 30.0% | |
| TAAAATAAGTCAATCCGAAC+GGG | - | chr4_1:63378547-63378566 | None:intergenic | 30.0% | |
| CTAAAATAAGTCAATCCGAA+CGG | - | chr4_1:63378548-63378567 | None:intergenic | 30.0% | |
| TATGAAGATACAATTTCCGT+TGG | - | chr4_1:63378636-63378655 | None:intergenic | 30.0% | |
| ! | GAATTATGAAATGGAAGCAT+GGG | + | chr4_1:63378824-63378843 | Msa0563090:intron | 30.0% |
| ! | AATTATGAAATGGAAGCATG+GGG | + | chr4_1:63378825-63378844 | Msa0563090:intron | 30.0% |
| GAACTCTAGTAGTAGATATT+AGG | + | chr4_1:63378860-63378879 | Msa0563090:intron | 30.0% | |
| ACAAAATTAGTTCATGCACA+TGG | - | chr4_1:63378887-63378906 | None:intergenic | 30.0% | |
| ATCATTTGTATATACGGAAG+TGG | + | chr4_1:63379092-63379111 | Msa0563090:intron | 30.0% | |
| AATAGACATAGAGGATTGAA+TGG | - | chr4_1:63379164-63379183 | None:intergenic | 30.0% | |
| !! | AATTTTGGTCATGCATCTTT+TGG | - | chr4_1:63379210-63379229 | None:intergenic | 30.0% |
| CATGTCATAGAAAACTTTGT+TGG | + | chr4_1:63379289-63379308 | Msa0563090:intron | 30.0% | |
| GAAAACTTTGTTGGAGTTTA+TGG | + | chr4_1:63379298-63379317 | Msa0563090:intron | 30.0% | |
| ! | AAACAAGTTGAATGAAGCTT+TGG | + | chr4_1:63379397-63379416 | Msa0563090:CDS | 30.0% |
| ! | TCTCAAATTTTGTATCGTCT+TGG | + | chr4_1:63379467-63379486 | Msa0563090:CDS | 30.0% |
| TTTGTATCGTCTTGGAAAAA+TGG | + | chr4_1:63379475-63379494 | Msa0563090:CDS | 30.0% | |
| AAAGTCCAAGATTGATATGT+TGG | + | chr4_1:63379529-63379548 | Msa0563090:CDS | 30.0% | |
| CTGCTTGTTCTTTAATTCAA+AGG | + | chr4_1:63379663-63379682 | Msa0563090:CDS | 30.0% | |
| TCAAAATATCACATCACCTT+CGG | - | chr4_1:63379726-63379745 | None:intergenic | 30.0% | |
| !!! | GTGATGTGATATTTTGATTG+TGG | + | chr4_1:63379729-63379748 | Msa0563090:intron | 30.0% |
| ! | CACAAAGCATCTATTACTAA+TGG | - | chr4_1:63380057-63380076 | None:intergenic | 30.0% |
| ! | GACAATCAAATGTTGTTTGT+CGG | + | chr4_1:63380147-63380166 | Msa0563090:intron | 30.0% |
| TCATAAATTTATTTCCTGGG+AGG | + | chr4_1:63380206-63380225 | Msa0563090:intron | 30.0% | |
| ! | CAATAATCTTGTTTCCTGAA+AGG | + | chr4_1:63380549-63380568 | Msa0563090:intron | 30.0% |
| ! | AGACTATCAGAAACATCTTT+TGG | - | chr4_1:63380576-63380595 | None:intergenic | 30.0% |
| ATAGTCTGAAGAAACTTGAT+CGG | + | chr4_1:63380589-63380608 | Msa0563090:intron | 30.0% | |
| TGAAACTTTCAGCAAAAGAA+AGG | + | chr4_1:63380661-63380680 | Msa0563090:CDS | 30.0% | |
| GAAACTTTCAGCAAAAGAAA+GGG | + | chr4_1:63380662-63380681 | Msa0563090:CDS | 30.0% | |
| GGAAGCAATATATGCAAATA+GGG | + | chr4_1:63380683-63380702 | Msa0563090:CDS | 30.0% | |
| GATATATGACTGATGATCTA+AGG | - | chr4_1:63380764-63380783 | None:intergenic | 30.0% | |
| TGGTATCTTTGTTAGAGAAT+CGG | - | chr4_1:63381148-63381167 | None:intergenic | 30.0% | |
| !! | TCGTTCTTTTAAAGACACAA+GGG | - | chr4_1:63381202-63381221 | None:intergenic | 30.0% |
| AAGAAGTCTAGGAAGTAATA+AGG | + | chr4_1:63381922-63381941 | Msa0563090:three_prime_UTR | 30.0% | |
| TTGAATCGAACCAAAATTGA+TGG | - | chr4_1:63382045-63382064 | None:intergenic | 30.0% | |
| ATCTGTAAGTTTAACGGCAT+TGG | - | chr4_1:63378162-63378181 | None:intergenic | 35.0% | |
| TTTCGGCAATTCAATCTTCT+CGG | + | chr4_1:63378361-63378380 | Msa0563090:CDS | 35.0% | |
| GAAATTCAGAATTAGAGCCT+AGG | + | chr4_1:63378463-63378482 | Msa0563090:intron | 35.0% | |
| AGAGAGAAGGTGATAGTTTA+GGG | + | chr4_1:63378778-63378797 | Msa0563090:intron | 35.0% | |
| CGAATTATGAAATGGAAGCA+TGG | + | chr4_1:63378823-63378842 | Msa0563090:intron | 35.0% | |
| TGCATGACCAAAATTGAACA+TGG | + | chr4_1:63379215-63379234 | Msa0563090:intron | 35.0% | |
| GCATGACCAAAATTGAACAT+GGG | + | chr4_1:63379216-63379235 | Msa0563090:intron | 35.0% | |
| CATGACCAAAATTGAACATG+GGG | + | chr4_1:63379217-63379236 | Msa0563090:intron | 35.0% | |
| ! | GAATTCCCCATGTTCAATTT+TGG | - | chr4_1:63379225-63379244 | None:intergenic | 35.0% |
| AAACACATACTCGTGAAGTT+TGG | - | chr4_1:63379965-63379984 | None:intergenic | 35.0% | |
| TCTCCTATTGCTGTACAATT+GGG | + | chr4_1:63380336-63380355 | Msa0563090:CDS | 35.0% | |
| AGATGCTATTGAAGCTTATG+TGG | + | chr4_1:63380477-63380496 | Msa0563090:CDS | 35.0% | |
| GGACATGATTAAACGAGATA+TGG | + | chr4_1:63380498-63380517 | Msa0563090:CDS | 35.0% | |
| ! | ATTATTGACTGCAACTGCAA+TGG | - | chr4_1:63380536-63380555 | None:intergenic | 35.0% |
| ! | AAACATCTTTTGGACCTTTC+AGG | - | chr4_1:63380566-63380585 | None:intergenic | 35.0% |
| GGGAAGCAATATATGCAAAT+AGG | + | chr4_1:63380682-63380701 | Msa0563090:CDS | 35.0% | |
| AAGAAGACAGATAAAAGACC+TGG | - | chr4_1:63380739-63380758 | None:intergenic | 35.0% | |
| AATACTGGTACAACACTATC+AGG | - | chr4_1:63380973-63380992 | None:intergenic | 35.0% | |
| TTTGTTCTCTCTAACCAAGA+GGG | - | chr4_1:63381007-63381026 | None:intergenic | 35.0% | |
| !! | TTCTTTTAAAGACACAAGGG+TGG | - | chr4_1:63381199-63381218 | None:intergenic | 35.0% |
| !! | CTCGTTCTTTTAAAGACACA+AGG | - | chr4_1:63381203-63381222 | None:intergenic | 35.0% |
| ! | ATTCAAGTTAAGGCATGGAA+GGG | + | chr4_1:63381332-63381351 | Msa0563090:CDS | 35.0% |
| TGCCTTAATAACATCAAGAC+GGG | - | chr4_1:63381442-63381461 | None:intergenic | 35.0% | |
| CTGCCTTAATAACATCAAGA+CGG | - | chr4_1:63381443-63381462 | None:intergenic | 35.0% | |
| !! | TTCTGGAGTTAAACAAGTTG+AGG | + | chr4_1:63381533-63381552 | Msa0563090:CDS | 35.0% |
| ! | TCTGGAGTTAAACAAGTTGA+GGG | + | chr4_1:63381534-63381553 | Msa0563090:CDS | 35.0% |
| AAAAGAGAAAGAGAAAGCCA+AGG | + | chr4_1:63381619-63381638 | Msa0563090:CDS | 35.0% | |
| !! | TTAAACCCTTTAGGATACCT+TGG | - | chr4_1:63381639-63381658 | None:intergenic | 35.0% |
| !! | TGATTTTGGATTGGAATGAC+TGG | - | chr4_1:63381817-63381836 | None:intergenic | 35.0% |
| TTCCAATCCAAAATCAAACC+AGG | + | chr4_1:63381821-63381840 | Msa0563090:CDS | 35.0% | |
| TTCTTTCTAGACTTGGATGA+AGG | - | chr4_1:63381907-63381926 | None:intergenic | 35.0% | |
| !! | TTGCTGCTTTCAATTACTGA+GGG | + | chr4_1:63381987-63382006 | Msa0563090:three_prime_UTR | 35.0% |
| TTGAACTCGCATAGTGTATA+TGG | - | chr4_1:63382014-63382033 | None:intergenic | 35.0% | |
| CTTCAATCGTCTCGCATAAA+CGG | - | chr4_1:63377975-63377994 | None:intergenic | 40.0% | |
| AATCAGTATCACCGTAACAG+TGG | - | chr4_1:63378015-63378034 | None:intergenic | 40.0% | |
| TTTCCACAGCTGAAACCTAA+TGG | + | chr4_1:63378037-63378056 | Msa0563090:exon | 40.0% | |
| ! | TTGGATGTGTTTGTTGAGAG+TGG | - | chr4_1:63378126-63378145 | None:intergenic | 40.0% |
| !! | TTTAACGGCATTGGTGAATG+CGG | - | chr4_1:63378153-63378172 | None:intergenic | 40.0% |
| !! | TCGATTTGGTGATGCTGTTT+CGG | + | chr4_1:63378344-63378363 | Msa0563090:CDS | 40.0% |
| TCAGAATTAGAGCCTAGGAT+AGG | + | chr4_1:63378468-63378487 | Msa0563090:intron | 40.0% | |
| CAGAATTAGAGCCTAGGATA+GGG | + | chr4_1:63378469-63378488 | Msa0563090:intron | 40.0% | |
| TCCATCAATTACCCTATCCT+AGG | - | chr4_1:63378483-63378502 | None:intergenic | 40.0% | |
| ! | ATAAGCCTTATACAAACGGG+TGG | + | chr4_1:63378745-63378764 | Msa0563090:intron | 40.0% |
| TTAGTCCACCCGTTTGTATA+AGG | - | chr4_1:63378753-63378772 | None:intergenic | 40.0% | |
| !! | TACAAACGGGTGGACTAAAT+TGG | + | chr4_1:63378755-63378774 | Msa0563090:intron | 40.0% |
| TGGACTAAATTGGAGAGAGA+AGG | + | chr4_1:63378765-63378784 | Msa0563090:intron | 40.0% | |
| GAGAGAGAAGGTGATAGTTT+AGG | + | chr4_1:63378777-63378796 | Msa0563090:intron | 40.0% | |
| !! | GAATGAAGCTTTGGAGTCTT+TGG | + | chr4_1:63379406-63379425 | Msa0563090:CDS | 40.0% |
| !!! | TCTTGGACTTTTGAAGCTTC+TGG | - | chr4_1:63379520-63379539 | None:intergenic | 40.0% |
| TTCTGTTGCTGCCTTAGTTA+TGG | + | chr4_1:63379559-63379578 | Msa0563090:CDS | 40.0% | |
| ! | GATCATCTGAAGTTCAAGGA+TGG | + | chr4_1:63379588-63379607 | Msa0563090:CDS | 40.0% |
| AAGGATGGCTGGATTCATTT+CGG | + | chr4_1:63379603-63379622 | Msa0563090:CDS | 40.0% | |
| !! | AGCAACAAGCAGCTTTGAAT+TGG | + | chr4_1:63379631-63379650 | Msa0563090:CDS | 40.0% |
| AAATATCACATCACCTTCGG+CGG | - | chr4_1:63379723-63379742 | None:intergenic | 40.0% | |
| GTTTGCAAGTCAAGTGTGAT+TGG | + | chr4_1:63380076-63380095 | Msa0563090:intron | 40.0% | |
| GTCTCCTATTGCTGTACAAT+TGG | + | chr4_1:63380335-63380354 | Msa0563090:CDS | 40.0% | |
| TAGCCCAATTGTACAGCAAT+AGG | - | chr4_1:63380342-63380361 | None:intergenic | 40.0% | |
| ! | ATCATTGATTGGCAGCTTCT+TGG | + | chr4_1:63380445-63380464 | Msa0563090:intron | 40.0% |
| ! | TCATTGATTGGCAGCTTCTT+GGG | + | chr4_1:63380446-63380465 | Msa0563090:intron | 40.0% |
| AACTGCAATGGACGATTCAT+CGG | - | chr4_1:63380524-63380543 | None:intergenic | 40.0% | |
| CTTTGCTTCTTCATGCTAAC+AGG | + | chr4_1:63380708-63380727 | Msa0563090:intron | 40.0% | |
| ATGGTTACATCGCAATCTGT+AGG | + | chr4_1:63380912-63380931 | Msa0563090:intron | 40.0% | |
| ACACTATCAGGAAACATGTC+TGG | - | chr4_1:63380961-63380980 | None:intergenic | 40.0% | |
| CTTTGTTCTCTCTAACCAAG+AGG | - | chr4_1:63381008-63381027 | None:intergenic | 40.0% | |
| TTGGTTAGAGAGAACAAAGC+TGG | + | chr4_1:63381009-63381028 | Msa0563090:CDS | 40.0% | |
| TTAGAGAGAACAAAGCTGGA+AGG | + | chr4_1:63381013-63381032 | Msa0563090:CDS | 40.0% | |
| TAGAGAGAACAAAGCTGGAA+GGG | + | chr4_1:63381014-63381033 | Msa0563090:CDS | 40.0% | |
| ACCAGATATTCAACACATGC+CGG | + | chr4_1:63381164-63381183 | Msa0563090:CDS | 40.0% | |
| ! | TCCATGCCTTAACTTGAATG+AGG | - | chr4_1:63381331-63381350 | None:intergenic | 40.0% |
| ! | CATTCAAGTTAAGGCATGGA+AGG | + | chr4_1:63381331-63381350 | Msa0563090:CDS | 40.0% |
| TGCCCGTCTTGATGTTATTA+AGG | + | chr4_1:63381437-63381456 | Msa0563090:CDS | 40.0% | |
| AAGAAACTAAAGACCTTGCC+TGG | + | chr4_1:63381474-63381493 | Msa0563090:CDS | 40.0% | |
| ACATCAATTCCCTTCAATCC+AGG | - | chr4_1:63381495-63381514 | None:intergenic | 40.0% | |
| TGGATTGAAGGGAATTGATG+TGG | + | chr4_1:63381494-63381513 | Msa0563090:CDS | 40.0% | |
| ! | AGAAAGCCAAGGTATCCTAA+AGG | + | chr4_1:63381630-63381649 | Msa0563090:CDS | 40.0% |
| ! | GAAAGCCAAGGTATCCTAAA+GGG | + | chr4_1:63381631-63381650 | Msa0563090:CDS | 40.0% |
| TTTGCAGGGTTAAACCCTTT+AGG | - | chr4_1:63381648-63381667 | None:intergenic | 40.0% | |
| TGCTGTAGTTAGAGATAAGC+AGG | + | chr4_1:63381776-63381795 | Msa0563090:CDS | 40.0% | |
| !! | TGCCTGGTTTGATTTTGGAT+TGG | - | chr4_1:63381826-63381845 | None:intergenic | 40.0% |
| !! | GAAGTTGCCTGGTTTGATTT+TGG | - | chr4_1:63381831-63381850 | None:intergenic | 40.0% |
| CCTAGACTTCTTTCTAGACT+TGG | - | chr4_1:63381914-63381933 | None:intergenic | 40.0% | |
| CCAAGTCTAGAAAGAAGTCT+AGG | + | chr4_1:63381911-63381930 | Msa0563090:exon | 40.0% | |
| !! | GTTGCTGCTTTCAATTACTG+AGG | + | chr4_1:63381986-63382005 | Msa0563090:three_prime_UTR | 40.0% |
| CAAGTGTTAATGTGCGTGTT+TGG | + | chr4_1:63382093-63382112 | Msa0563090:three_prime_UTR | 40.0% | |
| AGAATAGAGAAACGCCGAAG+TGG | - | chr4_1:63377939-63377958 | None:intergenic | 45.0% | |
| GTAACAGTGGTTGTTGCTGA+GGG | - | chr4_1:63378002-63378021 | None:intergenic | 45.0% | |
| CTCAGCAACAACCACTGTTA+CGG | + | chr4_1:63378001-63378020 | Msa0563090:five_prime_UTR | 45.0% | |
| AATAGATCTTCGAGTGGAGG+TGG | - | chr4_1:63378101-63378120 | None:intergenic | 45.0% | |
| GTGAATAGATCTTCGAGTGG+AGG | - | chr4_1:63378104-63378123 | None:intergenic | 45.0% | |
| GTGGTGAATAGATCTTCGAG+TGG | - | chr4_1:63378107-63378126 | None:intergenic | 45.0% | |
| TCAACGCAACGATCTTGCAT+CGG | - | chr4_1:63378314-63378333 | None:intergenic | 45.0% | |
| GCCTAGGATAGGGTAATTGA+TGG | + | chr4_1:63378479-63378498 | Msa0563090:intron | 45.0% | |
| TGGAAAAATGGATGCTTGCC+TGG | + | chr4_1:63379487-63379506 | Msa0563090:CDS | 45.0% | |
| GAAGCTTCTGGTAGATATCC+AGG | - | chr4_1:63379508-63379527 | None:intergenic | 45.0% | |
| TTGCTGCCTTAGTTATGGCA+GGG | + | chr4_1:63379564-63379583 | Msa0563090:CDS | 45.0% | |
| TGATCTCCCTGCCATAACTA+AGG | - | chr4_1:63379573-63379592 | None:intergenic | 45.0% | |
| ! | GGGAGATCATCTGAAGTTCA+AGG | + | chr4_1:63379584-63379603 | Msa0563090:CDS | 45.0% |
| ! | ATCTGAAGTTCAAGGATGGC+TGG | + | chr4_1:63379592-63379611 | Msa0563090:CDS | 45.0% |
| AGGATGGCTGGATTCATTTC+GGG | + | chr4_1:63379604-63379623 | Msa0563090:CDS | 45.0% | |
| CCATTCATGTATAACCTCCC+AGG | - | chr4_1:63380223-63380242 | None:intergenic | 45.0% | |
| CCTGGGAGGTTATACATGAA+TGG | + | chr4_1:63380220-63380239 | Msa0563090:intron | 45.0% | |
| AATTGGTCAAGAGAGCCTGA+TGG | + | chr4_1:63380275-63380294 | Msa0563090:CDS | 45.0% | |
| AGAGCCTGATGGAAGATAAC+TGG | + | chr4_1:63380286-63380305 | Msa0563090:CDS | 45.0% | |
| ACAATTGGGCTATGTCCAAC+AGG | + | chr4_1:63380350-63380369 | Msa0563090:CDS | 45.0% | |
| AGATCAGAACTCCTACCTGT+TGG | - | chr4_1:63380368-63380387 | None:intergenic | 45.0% | |
| TCAAGTCCAATCCATGAGCT+AGG | - | chr4_1:63380644-63380663 | None:intergenic | 45.0% | |
| TCATGCTAACAGGATTGACC+AGG | + | chr4_1:63380718-63380737 | Msa0563090:intron | 45.0% | |
| GATATACTGGCACAGTTTGC+TGG | + | chr4_1:63381042-63381061 | Msa0563090:CDS | 45.0% | |
| TAAAGAACCTGGGACTTCTC+AGG | - | chr4_1:63381075-63381094 | None:intergenic | 45.0% | |
| CCTGGCTAAGTAAAGAACCT+GGG | - | chr4_1:63381085-63381104 | None:intergenic | 45.0% | |
| CCAGGTTCTTTACTTAGCCA+GGG | + | chr4_1:63381083-63381102 | Msa0563090:CDS | 45.0% | |
| GAGAATCGGCTGCAATATGT+GGG | - | chr4_1:63381134-63381153 | None:intergenic | 45.0% | |
| AGAGAATCGGCTGCAATATG+TGG | - | chr4_1:63381135-63381154 | None:intergenic | 45.0% | |
| TGCTTGATTCTGCAACCAAG+TGG | + | chr4_1:63381250-63381269 | Msa0563090:CDS | 45.0% | |
| TTGATTCTGCAACCAAGTGG+TGG | + | chr4_1:63381253-63381272 | Msa0563090:CDS | 45.0% | |
| CATAGCATTAGACCACCACT+TGG | - | chr4_1:63381268-63381287 | None:intergenic | 45.0% | |
| GTGGTCTAATGCTATGACTG+AGG | + | chr4_1:63381272-63381291 | Msa0563090:CDS | 45.0% | |
| ! | AGGCTGCCTCATTCAAGTTA+AGG | + | chr4_1:63381322-63381341 | Msa0563090:CDS | 45.0% |
| ! | GCCTCATTCAAGTTAAGGCA+TGG | + | chr4_1:63381327-63381346 | Msa0563090:CDS | 45.0% |
| GCATGCTGCTAAACTCTATG+AGG | + | chr4_1:63381359-63381378 | Msa0563090:CDS | 45.0% | |
| TGAGGAGCTCGTTAAAAGTC+AGG | + | chr4_1:63381377-63381396 | Msa0563090:CDS | 45.0% | |
| GAGGAGCTCGTTAAAAGTCA+GGG | + | chr4_1:63381378-63381397 | Msa0563090:CDS | 45.0% | |
| !! | GAAGCATAGAAGCGCTAGTT+GGG | + | chr4_1:63381400-63381419 | Msa0563090:CDS | 45.0% |
| AAAGACCTTGCCTGGATTGA+AGG | + | chr4_1:63381482-63381501 | Msa0563090:CDS | 45.0% | |
| AAGACCTTGCCTGGATTGAA+GGG | + | chr4_1:63381483-63381502 | Msa0563090:CDS | 45.0% | |
| AATTCCCTTCAATCCAGGCA+AGG | - | chr4_1:63381490-63381509 | None:intergenic | 45.0% | |
| CTTTCCTTCGTCGTTCGTTT+CGG | - | chr4_1:63381580-63381599 | None:intergenic | 45.0% | |
| AAAGTTGACCTCTCTCGCTT+GGG | - | chr4_1:63381705-63381724 | None:intergenic | 45.0% | |
| AAAAGTTGACCTCTCTCGCT+TGG | - | chr4_1:63381706-63381725 | None:intergenic | 45.0% | |
| ! | AGCGAGAGAGGTCAACTTTT+AGG | + | chr4_1:63381706-63381725 | Msa0563090:CDS | 45.0% |
| ! | AACTTTTAGGCCCAAGAGGA+AGG | + | chr4_1:63381719-63381738 | Msa0563090:CDS | 45.0% |
| AAACGAGCTGCTCAAGTTAG+AGG | + | chr4_1:63381744-63381763 | Msa0563090:CDS | 45.0% | |
| GTTAGAGATAAGCAGGAAGC+TGG | + | chr4_1:63381783-63381802 | Msa0563090:CDS | 45.0% | |
| AAACCAGGCAACTTCTCCAA+AGG | + | chr4_1:63381836-63381855 | Msa0563090:CDS | 45.0% | |
| TCTAGACTTGGATGAAGGCT+TGG | - | chr4_1:63381902-63381921 | None:intergenic | 45.0% | |
| TCGCATAAACGGCGATTCAG+GGG | - | chr4_1:63377964-63377983 | None:intergenic | 50.0% | |
| CTCGCATAAACGGCGATTCA+GGG | - | chr4_1:63377965-63377984 | None:intergenic | 50.0% | |
| TCTCGCATAAACGGCGATTC+AGG | - | chr4_1:63377966-63377985 | None:intergenic | 50.0% | |
| CGTAACAGTGGTTGTTGCTG+AGG | - | chr4_1:63378003-63378022 | None:intergenic | 50.0% | |
| GAGCCATTAGGTTTCAGCTG+TGG | - | chr4_1:63378043-63378062 | None:intergenic | 50.0% | |
| CATTGGTGAATGCGGAAGCT+TGG | - | chr4_1:63378145-63378164 | None:intergenic | 50.0% | |
| GTTGCTGCCTTAGTTATGGC+AGG | + | chr4_1:63379563-63379582 | Msa0563090:CDS | 50.0% | |
| CAGGCCAGTTATCTTCCATC+AGG | - | chr4_1:63380293-63380312 | None:intergenic | 50.0% | |
| TTGGGCTATGTCCAACAGGT+AGG | + | chr4_1:63380354-63380373 | Msa0563090:intron | 50.0% | |
| CAAAGCTTTCGCCTAGCTCA+TGG | + | chr4_1:63380630-63380649 | Msa0563090:CDS | 50.0% | |
| CTTTCGCCTAGCTCATGGAT+TGG | + | chr4_1:63380635-63380654 | Msa0563090:CDS | 50.0% | |
| TGGAAGGGCTGAGGATATAC+TGG | + | chr4_1:63381029-63381048 | Msa0563090:CDS | 50.0% | |
| AAAGTTGCCTGAGAAGTCCC+AGG | + | chr4_1:63381065-63381084 | Msa0563090:CDS | 50.0% | |
| CCCAGGTTCTTTACTTAGCC+AGG | + | chr4_1:63381082-63381101 | Msa0563090:CDS | 50.0% | |
| CCCTGGCTAAGTAAAGAACC+TGG | - | chr4_1:63381086-63381105 | None:intergenic | 50.0% | |
| TCTTTACTTAGCCAGGGCTC+AGG | + | chr4_1:63381089-63381108 | Msa0563090:CDS | 50.0% | |
| AATCGGCTGCAATATGTGGG+TGG | - | chr4_1:63381131-63381150 | None:intergenic | 50.0% | |
| GCCGGCATGTGTTGAATATC+TGG | - | chr4_1:63381168-63381187 | None:intergenic | 50.0% | |
| !! | GGAAGCATAGAAGCGCTAGT+TGG | + | chr4_1:63381399-63381418 | Msa0563090:CDS | 50.0% |
| GGGAATTGATGTGGACAGCT+TGG | + | chr4_1:63381503-63381522 | Msa0563090:CDS | 50.0% | |
| ! | GGTCAACTTTTAGGCCCAAG+AGG | + | chr4_1:63381715-63381734 | Msa0563090:CDS | 50.0% |
| GCTCGTTTGTCCTTCCTCTT+GGG | - | chr4_1:63381732-63381751 | None:intergenic | 50.0% | |
| AGCTCGTTTGTCCTTCCTCT+TGG | - | chr4_1:63381733-63381752 | None:intergenic | 50.0% | |
| TGCTCAAGTTAGAGGCTCAC+AGG | + | chr4_1:63381752-63381771 | Msa0563090:CDS | 50.0% | |
| GCTCAAGTTAGAGGCTCACA+GGG | + | chr4_1:63381753-63381772 | Msa0563090:CDS | 50.0% | |
| TGCACTCTGAGTAGCACCTT+TGG | - | chr4_1:63381855-63381874 | None:intergenic | 50.0% | |
| ATGAAGGCTTGGATGAGGCT+TGG | - | chr4_1:63381891-63381910 | None:intergenic | 50.0% | |
| CTTGGATGAAGGCTTGGATG+AGG | - | chr4_1:63381896-63381915 | None:intergenic | 50.0% | |
| GTTTGGGCTTCGGAGCCATT+AGG | - | chr4_1:63378055-63378074 | None:intergenic | 55.0% | |
| ATCTTCGAGTGGAGGTGGAG+CGG | - | chr4_1:63378096-63378115 | None:intergenic | 55.0% | |
| GCAGTTCTCGCAATTGCACC+TGG | + | chr4_1:63378273-63378292 | Msa0563090:intron | 55.0% | |
| ATCTTCTCGGTCTCCTCCTG+AGG | + | chr4_1:63378374-63378393 | Msa0563090:CDS | 55.0% | |
| AGGGCAGCTTGCAGCAATAC+TGG | - | chr4_1:63380988-63381007 | None:intergenic | 55.0% | |
| ATTGCTGCAAGCTGCCCTCT+TGG | + | chr4_1:63380990-63381009 | Msa0563090:CDS | 55.0% | |
| GAACAAAGCTGGAAGGGCTG+AGG | + | chr4_1:63381020-63381039 | Msa0563090:CDS | 55.0% | |
| ACAAGGGTGGCAACAGTAGC+CGG | - | chr4_1:63381186-63381205 | None:intergenic | 55.0% | |
| AGAACGAGCCAACGACGTTG+AGG | + | chr4_1:63381215-63381234 | Msa0563090:CDS | 55.0% | |
| GAACGAGCCAACGACGTTGA+GGG | + | chr4_1:63381216-63381235 | Msa0563090:CDS | 55.0% | |
| GACAGCTTGGAGCGTACTTC+TGG | + | chr4_1:63381516-63381535 | Msa0563090:CDS | 55.0% | |
| GTTGAGGGTCCTCTTCATGC+AGG | + | chr4_1:63381549-63381568 | Msa0563090:CDS | 55.0% | |
| TCGGCAACACCTGCATGAAG+AGG | - | chr4_1:63381561-63381580 | None:intergenic | 55.0% | |
| GTTGCCGAAACGAACGACGA+AGG | + | chr4_1:63381573-63381592 | Msa0563090:CDS | 55.0% | |
| GGGTTTAACCCTGCAAACCC+AGG | + | chr4_1:63381651-63381670 | Msa0563090:CDS | 55.0% | |
| GTCCTCCACCAGATCCAGAA+AGG | + | chr4_1:63381673-63381692 | Msa0563090:CDS | 55.0% | |
| CACCTTTCTGGATCTGGTGG+AGG | - | chr4_1:63381678-63381697 | None:intergenic | 55.0% | |
| CTCCACCAGATCCAGAAAGG+TGG | + | chr4_1:63381676-63381695 | Msa0563090:CDS | 55.0% | |
| AGCCACCTTTCTGGATCTGG+TGG | - | chr4_1:63381681-63381700 | None:intergenic | 55.0% | |
| GGAAGCCACCTTTCTGGATC+TGG | - | chr4_1:63381684-63381703 | None:intergenic | 55.0% | |
| ! | GCACCTTTGGAGAAGTTGCC+TGG | - | chr4_1:63381842-63381861 | None:intergenic | 55.0% |
| !! | GACTGCGTCGGTTTGGGCTT+CGG | - | chr4_1:63378065-63378084 | None:intergenic | 60.0% |
| TCTTCGAGTGGAGGTGGAGC+GGG | - | chr4_1:63378095-63378114 | None:intergenic | 60.0% | |
| ! | CAGCTCTTGTTGTCCGCCGA+AGG | + | chr4_1:63379707-63379726 | Msa0563090:intron | 60.0% |
| ! | CTTAGCCAGGGCTCAGGTTG+CGG | + | chr4_1:63381095-63381114 | Msa0563090:CDS | 60.0% |
| AGCTGCACCCTCAACGTCGT+TGG | - | chr4_1:63381226-63381245 | None:intergenic | 60.0% | |
| GTGGAGGACCTGGGTTTGCA+GGG | - | chr4_1:63381662-63381681 | None:intergenic | 60.0% | |
| CTGGATCTGGTGGAGGACCT+GGG | - | chr4_1:63381671-63381690 | None:intergenic | 60.0% | |
| TCTGGATCTGGTGGAGGACC+TGG | - | chr4_1:63381672-63381691 | None:intergenic | 60.0% | |
| CGCTTGGGAAGCCACCTTTC+TGG | - | chr4_1:63381690-63381709 | None:intergenic | 60.0% | |
| !! | GGCTGCGACTGCGTCGGTTT+GGG | - | chr4_1:63378071-63378090 | None:intergenic | 65.0% |
| !! | AGGCTGCGACTGCGTCGGTT+TGG | - | chr4_1:63378072-63378091 | None:intergenic | 65.0% |
| CGGAGTGCGTCTTCATCGCC+AGG | - | chr4_1:63378294-63378313 | None:intergenic | 65.0% | |
| GGTGGAGGACCTGGGTTTGC+AGG | - | chr4_1:63381663-63381682 | None:intergenic | 65.0% | |
| GGTGGCTTCCCAAGCGAGAG+AGG | + | chr4_1:63381694-63381713 | Msa0563090:CDS | 65.0% | |
| TCGAGTGGAGGTGGAGCGGG+AGG | - | chr4_1:63378092-63378111 | None:intergenic | 70.0% | |
| ! | AGCCAGGGCTCAGGTTGCGG+CGG | + | chr4_1:63381098-63381117 | Msa0563090:CDS | 70.0% |
| GCGGGAGGCTGCGACTGCGT+CGG | - | chr4_1:63378077-63378096 | None:intergenic | 75.0% | |
| ! | CAGGGCTCAGGTTGCGGCGG+CGG | + | chr4_1:63381101-63381120 | Msa0563090:CDS | 75.0% |
| ! | CGCCGCCGCAACCTGAGCCC+TGG | - | chr4_1:63381103-63381122 | None:intergenic | 80.0% |
| !! | GCTCAGGTTGCGGCGGCGGC+TGG | + | chr4_1:63381105-63381124 | Msa0563090:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 63377933 | 63382180 | 63377933 | ID=Msa0563090;Name=Msa0563090 |
| chr4_1 | mRNA | 63377933 | 63382180 | 63377933 | ID=Msa0563090-mRNA-1;Parent=Msa0563090;Name=Msa0563090-mRNA-1;_AED=0.05;_eAED=0.05;_QI=123|0.5|0.57|1|0.5|0.71|7|260|630 |
| chr4_1 | exon | 63377933 | 63378185 | 63377933 | ID=Msa0563090-mRNA-1:exon:20037;Parent=Msa0563090-mRNA-1 |
| chr4_1 | exon | 63378277 | 63378413 | 63378277 | ID=Msa0563090-mRNA-1:exon:20038;Parent=Msa0563090-mRNA-1 |
| chr4_1 | exon | 63379377 | 63379714 | 63379377 | ID=Msa0563090-mRNA-1:exon:20039;Parent=Msa0563090-mRNA-1 |
| chr4_1 | exon | 63380275 | 63380371 | 63380275 | ID=Msa0563090-mRNA-1:exon:20040;Parent=Msa0563090-mRNA-1 |
| chr4_1 | exon | 63380460 | 63380558 | 63380460 | ID=Msa0563090-mRNA-1:exon:20041;Parent=Msa0563090-mRNA-1 |
| chr4_1 | exon | 63380600 | 63380704 | 63380600 | ID=Msa0563090-mRNA-1:exon:20042;Parent=Msa0563090-mRNA-1 |
| chr4_1 | exon | 63380934 | 63382180 | 63380934 | ID=Msa0563090-mRNA-1:exon:20043;Parent=Msa0563090-mRNA-1 |
| chr4_1 | five_prime_UTR | 63377933 | 63378055 | 63377933 | ID=Msa0563090-mRNA-1:five_prime_utr;Parent=Msa0563090-mRNA-1 |
| chr4_1 | CDS | 63378056 | 63378185 | 63378056 | ID=Msa0563090-mRNA-1:cds;Parent=Msa0563090-mRNA-1 |
| chr4_1 | CDS | 63378277 | 63378413 | 63378277 | ID=Msa0563090-mRNA-1:cds;Parent=Msa0563090-mRNA-1 |
| chr4_1 | CDS | 63379377 | 63379714 | 63379377 | ID=Msa0563090-mRNA-1:cds;Parent=Msa0563090-mRNA-1 |
| chr4_1 | CDS | 63380275 | 63380371 | 63380275 | ID=Msa0563090-mRNA-1:cds;Parent=Msa0563090-mRNA-1 |
| chr4_1 | CDS | 63380460 | 63380558 | 63380460 | ID=Msa0563090-mRNA-1:cds;Parent=Msa0563090-mRNA-1 |
| chr4_1 | CDS | 63380600 | 63380704 | 63380600 | ID=Msa0563090-mRNA-1:cds;Parent=Msa0563090-mRNA-1 |
| chr4_1 | CDS | 63380934 | 63381920 | 63380934 | ID=Msa0563090-mRNA-1:cds;Parent=Msa0563090-mRNA-1 |
| chr4_1 | three_prime_UTR | 63381921 | 63382180 | 63381921 | ID=Msa0563090-mRNA-1:three_prime_utr;Parent=Msa0563090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
