Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569130 | XP_003630257.1 | 91.844 | 282 | 13 | 1 | 3 | 274 | 354 | 635 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569130 | G7LE11 | 91.844 | 282 | 13 | 1 | 3 | 274 | 354 | 635 | 0.0 | 531 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0569130 | 0.803327 | 3.674934e-49 | -8.615850e-47 |
| Msa0120860 | Msa0569130 | 0.810583 | 1.072475e-50 | -8.615850e-47 |
| Msa0134570 | Msa0569130 | 0.806260 | 8.967336e-50 | -8.615850e-47 |
| Msa0150910 | Msa0569130 | 0.817342 | 3.465992e-52 | -8.615850e-47 |
| Msa0190670 | Msa0569130 | 0.807140 | 5.846714e-50 | -8.615850e-47 |
| Msa0238140 | Msa0569130 | 0.821582 | 3.740621e-53 | -8.615850e-47 |
| Msa0271660 | Msa0569130 | 0.814145 | 1.788091e-51 | -8.615850e-47 |
| Msa0535570 | Msa0569130 | 0.801498 | 8.752850e-49 | -8.615850e-47 |
| Msa0569100 | Msa0569130 | 0.879674 | 1.027808e-69 | -8.615850e-47 |
| Msa0569130 | Msa0580210 | 0.859162 | 5.003412e-63 | -8.615850e-47 |
| Msa0569130 | Msa0584370 | 0.800922 | 1.148078e-48 | -8.615850e-47 |
| Msa0569130 | Msa0671640 | 0.837660 | 4.560272e-57 | -8.615850e-47 |
| Msa0569130 | Msa0695630 | 0.801444 | 8.978247e-49 | -8.615850e-47 |
| Msa0569130 | Msa0705520 | 0.865258 | 6.729218e-65 | -8.615850e-47 |
| Msa0569130 | Msa0724440 | 0.806924 | 6.493191e-50 | -8.615850e-47 |
| Msa0569130 | Msa0789220 | 0.804684 | 1.919877e-49 | -8.615850e-47 |
| Msa0569130 | Msa0814160 | 0.829664 | 4.535887e-55 | -8.615850e-47 |
| Msa0569130 | Msa0854840 | 0.810688 | 1.017828e-50 | -8.615850e-47 |
| Msa0569130 | Msa1041650 | 0.812606 | 3.895530e-51 | -8.615850e-47 |
| Msa0569130 | Msa1079780 | 0.804546 | 2.051490e-49 | -8.615850e-47 |
| Msa0569130 | Msa1087380 | 0.801434 | 9.019823e-49 | -8.615850e-47 |
| Msa0569130 | Msa1090150 | 0.855239 | 7.207136e-62 | -8.615850e-47 |
| Msa0569130 | Msa1093420 | 0.814063 | 1.863898e-51 | -8.615850e-47 |
| Msa0569130 | Msa1166550 | 0.812432 | 4.252421e-51 | -8.615850e-47 |
| Msa0569130 | Msa1170320 | 0.804900 | 1.729983e-49 | -8.615850e-47 |
| Msa0569130 | Msa1317740 | 0.802752 | 4.832930e-49 | -8.615850e-47 |
| Msa0569130 | Msa1345390 | 0.806964 | 6.368989e-50 | -8.615850e-47 |
| Msa0569130 | Msa1369060 | 0.861103 | 1.297431e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569130 | MtrunA17_Chr8g0384171 | 91.844 | 282 | 13 | 1 | 3 | 274 | 354 | 635 | 0.0 | 531 |
| Msa0569130 | MtrunA17_Chr8g0384181 | 57.525 | 299 | 93 | 3 | 3 | 274 | 371 | 662 | 1.72e-116 | 348 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGCAGCTTTGGCATTT+TGG | 0.161804 | 4_1:+70944912 | Msa0569130:CDS |
| GCTCTCACTGTTTGTATTAT+TGG | 0.196779 | 4_1:-70944896 | None:intergenic |
| CATGCTTGGAGAAGGGAATT+TGG | 0.204693 | 4_1:-70945885 | None:intergenic |
| CTTCTAGTTAAACTATAAAA+TGG | 0.259561 | 4_1:-70945937 | None:intergenic |
| TTCCCTAAAATCTCAATGTT+TGG | 0.262646 | 4_1:-70945019 | None:intergenic |
| TCCCTAAAATCTCAATGTTT+GGG | 0.322790 | 4_1:-70945018 | None:intergenic |
| TGACAATATAGCTTGTCTTT+TGG | 0.342303 | 4_1:-70945050 | None:intergenic |
| ATAGAGTTTGTATCTATATA+TGG | 0.353882 | 4_1:+70945629 | Msa0569130:CDS |
| ATGCTTGGAGAAGGGAATTT+GGG | 0.382762 | 4_1:-70945884 | None:intergenic |
| ACATTGCTAAATGATCTCTT+TGG | 0.391713 | 4_1:+70945159 | Msa0569130:CDS |
| CCAGGATACATTGTACTTAG+AGG | 0.405453 | 4_1:+70944841 | Msa0569130:intron |
| GGGTTATGTTGGTGTAAAAC+CGG | 0.407675 | 4_1:+70945541 | Msa0569130:intron |
| ACAAACAGTGAGAGCAGCTT+TGG | 0.409550 | 4_1:+70944904 | Msa0569130:CDS |
| GACATAGAGGAAAGGGAAAA+CGG | 0.419630 | 4_1:+70944863 | Msa0569130:CDS |
| AAAATCTCAATGTTTGGGTT+GGG | 0.422552 | 4_1:-70945013 | None:intergenic |
| CGAGGCGGGTGTGCTTGTGC+TGG | 0.427601 | 4_1:+70945192 | Msa0569130:CDS |
| ACATAGAGGAAAGGGAAAAC+GGG | 0.438297 | 4_1:+70944864 | Msa0569130:CDS |
| CTCACTGTTTGTATTATTGG+AGG | 0.439527 | 4_1:-70944893 | None:intergenic |
| TAAAATCTCAATGTTTGGGT+TGG | 0.441881 | 4_1:-70945014 | None:intergenic |
| ATATATAGATACAAACTCTA+TGG | 0.442580 | 4_1:-70945627 | None:intergenic |
| TCCTCCTCATCCATGTAGTA+AGG | 0.467151 | 4_1:-70945584 | None:intergenic |
| TGTGCTTGTGCTGGACCTTA+CGG | 0.467618 | 4_1:+70945201 | Msa0569130:CDS |
| CTTAGAGGACATAGAGGAAA+GGG | 0.479020 | 4_1:+70944856 | Msa0569130:CDS |
| CGCAAGACTAAGAACAAAAG+AGG | 0.484458 | 4_1:+70945108 | Msa0569130:CDS |
| AATGTAAGAATTAAATCAGT+TGG | 0.490879 | 4_1:+70945809 | Msa0569130:CDS |
| ACATCTGGACAGACCATGCT+TGG | 0.501898 | 4_1:-70945899 | None:intergenic |
| AGAACACTGGGATCTACATC+TGG | 0.503224 | 4_1:-70945914 | None:intergenic |
| GGACAGACCATGCTTGGAGA+AGG | 0.520334 | 4_1:-70945893 | None:intergenic |
| AAAGCTTGAAACTCTGATGA+AGG | 0.520437 | 4_1:+70945715 | Msa0569130:CDS |
| CAAATTCCCTTCTCCAAGCA+TGG | 0.525202 | 4_1:+70945886 | Msa0569130:CDS |
| AATCAGTTGGTAAGATGAGA+AGG | 0.526323 | 4_1:+70945822 | Msa0569130:CDS |
| AAAAGAGGTAAGATACTCAA+TGG | 0.527999 | 4_1:+70945123 | Msa0569130:CDS |
| TTGGAATACAAGCTCGAGGC+GGG | 0.538102 | 4_1:+70945178 | Msa0569130:CDS |
| AACTATAAAATGGAGAACAC+TGG | 0.538606 | 4_1:-70945927 | None:intergenic |
| TCCTTACTACATGGATGAGG+AGG | 0.541042 | 4_1:+70945583 | Msa0569130:CDS |
| AATTGAAGTTGTATAGCGGA+AGG | 0.567777 | 4_1:-70945661 | None:intergenic |
| GACAGACCATGCTTGGAGAA+GGG | 0.571080 | 4_1:-70945892 | None:intergenic |
| ACTATAAAATGGAGAACACT+GGG | 0.591554 | 4_1:-70945926 | None:intergenic |
| TTGTATCTATATATGGTCAA+CGG | 0.594729 | 4_1:+70945636 | Msa0569130:CDS |
| TTCAAATTGAAGTTGTATAG+CGG | 0.601025 | 4_1:-70945665 | None:intergenic |
| TTGAGCAAATCATGTCCGTA+AGG | 0.609814 | 4_1:-70945216 | None:intergenic |
| AAACTAACTCTAGTCCATCC+CGG | 0.622757 | 4_1:-70945560 | None:intergenic |
| TGTTAGATCAGCAATTCAAG+AGG | 0.626396 | 4_1:+70945263 | Msa0569130:CDS |
| ACTTAGAGGACATAGAGGAA+AGG | 0.629801 | 4_1:+70944855 | Msa0569130:CDS |
| CTCTTTGGAATACAAGCTCG+AGG | 0.633421 | 4_1:+70945174 | Msa0569130:CDS |
| GGTTATGTTGGTGTAAAACC+GGG | 0.635004 | 4_1:+70945542 | Msa0569130:CDS |
| CATAGAGGAAAGGGAAAACG+GGG | 0.640927 | 4_1:+70944865 | Msa0569130:CDS |
| ATGTTGGTGTAAAACCGGGA+TGG | 0.664075 | 4_1:+70945546 | Msa0569130:CDS |
| ATTGTACTTAGAGGACATAG+AGG | 0.684016 | 4_1:+70944850 | Msa0569130:CDS |
| TTTGGAATACAAGCTCGAGG+CGG | 0.692897 | 4_1:+70945177 | Msa0569130:CDS |
| ATAGAGGAAAGGGAAAACGG+GGG | 0.829558 | 4_1:+70944866 | Msa0569130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTGTTTTTAAACA+GGG | + | chr4_1:70945521-70945540 | Msa0569130:intron | 10.0% |
| !!! | TTATTTATTGTTTTTAAACA+GGG | + | chr4_1:70945521-70945540 | Msa0569130:intron | 10.0% |
| !! | ATGTTTAACATGTTAAAAAA+AGG | - | chr4_1:70945494-70945513 | None:intergenic | 15.0% |
| !!! | CTTATTTATTGTTTTTAAAC+AGG | + | chr4_1:70945520-70945539 | Msa0569130:intron | 15.0% |
| !! | ATGTTTAACATGTTAAAAAA+AGG | - | chr4_1:70945494-70945513 | None:intergenic | 15.0% |
| !!! | CTTATTTATTGTTTTTAAAC+AGG | + | chr4_1:70945520-70945539 | Msa0569130:intron | 15.0% |
| !! | ATATATAGATACAAACTCTA+TGG | - | chr4_1:70945630-70945649 | None:intergenic | 20.0% |
| !! | ATAGAGTTTGTATCTATATA+TGG | + | chr4_1:70945629-70945648 | Msa0569130:CDS | 20.0% |
| !! | TACAACTTCAATTTGAAAAA+TGG | + | chr4_1:70945671-70945690 | Msa0569130:CDS | 20.0% |
| !! | AATGTAAGAATTAAATCAGT+TGG | + | chr4_1:70945809-70945828 | Msa0569130:CDS | 20.0% |
| !! | ATATATAGATACAAACTCTA+TGG | - | chr4_1:70945630-70945649 | None:intergenic | 20.0% |
| !! | ATAGAGTTTGTATCTATATA+TGG | + | chr4_1:70945629-70945648 | Msa0569130:CDS | 20.0% |
| !! | TACAACTTCAATTTGAAAAA+TGG | + | chr4_1:70945671-70945690 | Msa0569130:CDS | 20.0% |
| !! | AATGTAAGAATTAAATCAGT+TGG | + | chr4_1:70945809-70945828 | Msa0569130:CDS | 20.0% |
| !! | GTTGATTTAAACATCATTTG+AGG | - | chr4_1:70944789-70944808 | None:intergenic | 25.0% |
| !! | TTATTACGAACACACATTTT+TGG | + | chr4_1:70945335-70945354 | Msa0569130:intron | 25.0% |
| !!! | CACACATTTTTGGAAAATAT+TGG | + | chr4_1:70945345-70945364 | Msa0569130:intron | 25.0% |
| ! | TTGAAGTAAAAAAAGAAACG+TGG | + | chr4_1:70945383-70945402 | Msa0569130:intron | 25.0% |
| ! | TTGTATCTATATATGGTCAA+CGG | + | chr4_1:70945636-70945655 | Msa0569130:CDS | 25.0% |
| ! | TTCAAATTGAAGTTGTATAG+CGG | - | chr4_1:70945668-70945687 | None:intergenic | 25.0% |
| !!! | AATGATTTTTTCAAAGCAGA+TGG | + | chr4_1:70945779-70945798 | Msa0569130:CDS | 25.0% |
| !! | GTTGATTTAAACATCATTTG+AGG | - | chr4_1:70944789-70944808 | None:intergenic | 25.0% |
| !! | TTATTACGAACACACATTTT+TGG | + | chr4_1:70945335-70945354 | Msa0569130:intron | 25.0% |
| !!! | CACACATTTTTGGAAAATAT+TGG | + | chr4_1:70945345-70945364 | Msa0569130:intron | 25.0% |
| ! | TTGAAGTAAAAAAAGAAACG+TGG | + | chr4_1:70945383-70945402 | Msa0569130:intron | 25.0% |
| ! | TTGTATCTATATATGGTCAA+CGG | + | chr4_1:70945636-70945655 | Msa0569130:CDS | 25.0% |
| ! | TTCAAATTGAAGTTGTATAG+CGG | - | chr4_1:70945668-70945687 | None:intergenic | 25.0% |
| !!! | AATGATTTTTTCAAAGCAGA+TGG | + | chr4_1:70945779-70945798 | Msa0569130:CDS | 25.0% |
| ! | ATTTAAACATCATTTGAGGC+GGG | - | chr4_1:70944785-70944804 | None:intergenic | 30.0% |
| GATTTAAACATCATTTGAGG+CGG | - | chr4_1:70944786-70944805 | None:intergenic | 30.0% | |
| CTTTCAAACATCATCTAATG+TGG | + | chr4_1:70944808-70944827 | Msa0569130:intron | 30.0% | |
| ! | AAAATCTCAATGTTTGGGTT+GGG | - | chr4_1:70945016-70945035 | None:intergenic | 30.0% |
| TAAAATCTCAATGTTTGGGT+TGG | - | chr4_1:70945017-70945036 | None:intergenic | 30.0% | |
| ! | AACCCAAACATTGAGATTTT+AGG | + | chr4_1:70945016-70945035 | Msa0569130:CDS | 30.0% |
| ! | ACCCAAACATTGAGATTTTA+GGG | + | chr4_1:70945017-70945036 | Msa0569130:CDS | 30.0% |
| TCCCTAAAATCTCAATGTTT+GGG | - | chr4_1:70945021-70945040 | None:intergenic | 30.0% | |
| TTCCCTAAAATCTCAATGTT+TGG | - | chr4_1:70945022-70945041 | None:intergenic | 30.0% | |
| !! | TGACAATATAGCTTGTCTTT+TGG | - | chr4_1:70945053-70945072 | None:intergenic | 30.0% |
| AAAAGAGGTAAGATACTCAA+TGG | + | chr4_1:70945123-70945142 | Msa0569130:CDS | 30.0% | |
| ACATTGCTAAATGATCTCTT+TGG | + | chr4_1:70945159-70945178 | Msa0569130:CDS | 30.0% | |
| ! | GTTTTTAAACAGGGTTATGT+TGG | + | chr4_1:70945530-70945549 | Msa0569130:intron | 30.0% |
| !!! | AGTTAGTTTTCCTTACTACA+TGG | + | chr4_1:70945574-70945593 | Msa0569130:CDS | 30.0% |
| TCAATTTGAAAAATGGCAAC+TGG | + | chr4_1:70945678-70945697 | Msa0569130:CDS | 30.0% | |
| ACTATAAAATGGAGAACACT+GGG | - | chr4_1:70945929-70945948 | None:intergenic | 30.0% | |
| AACTATAAAATGGAGAACAC+TGG | - | chr4_1:70945930-70945949 | None:intergenic | 30.0% | |
| ! | ATTTAAACATCATTTGAGGC+GGG | - | chr4_1:70944785-70944804 | None:intergenic | 30.0% |
| GATTTAAACATCATTTGAGG+CGG | - | chr4_1:70944786-70944805 | None:intergenic | 30.0% | |
| CTTTCAAACATCATCTAATG+TGG | + | chr4_1:70944808-70944827 | Msa0569130:intron | 30.0% | |
| ! | AAAATCTCAATGTTTGGGTT+GGG | - | chr4_1:70945016-70945035 | None:intergenic | 30.0% |
| TAAAATCTCAATGTTTGGGT+TGG | - | chr4_1:70945017-70945036 | None:intergenic | 30.0% | |
| ! | AACCCAAACATTGAGATTTT+AGG | + | chr4_1:70945016-70945035 | Msa0569130:CDS | 30.0% |
| ! | ACCCAAACATTGAGATTTTA+GGG | + | chr4_1:70945017-70945036 | Msa0569130:CDS | 30.0% |
| TCCCTAAAATCTCAATGTTT+GGG | - | chr4_1:70945021-70945040 | None:intergenic | 30.0% | |
| TTCCCTAAAATCTCAATGTT+TGG | - | chr4_1:70945022-70945041 | None:intergenic | 30.0% | |
| !! | TGACAATATAGCTTGTCTTT+TGG | - | chr4_1:70945053-70945072 | None:intergenic | 30.0% |
| AAAAGAGGTAAGATACTCAA+TGG | + | chr4_1:70945123-70945142 | Msa0569130:CDS | 30.0% | |
| ACATTGCTAAATGATCTCTT+TGG | + | chr4_1:70945159-70945178 | Msa0569130:CDS | 30.0% | |
| ! | GTTTTTAAACAGGGTTATGT+TGG | + | chr4_1:70945530-70945549 | Msa0569130:intron | 30.0% |
| !!! | AGTTAGTTTTCCTTACTACA+TGG | + | chr4_1:70945574-70945593 | Msa0569130:CDS | 30.0% |
| TCAATTTGAAAAATGGCAAC+TGG | + | chr4_1:70945678-70945697 | Msa0569130:CDS | 30.0% | |
| ACTATAAAATGGAGAACACT+GGG | - | chr4_1:70945929-70945948 | None:intergenic | 30.0% | |
| AACTATAAAATGGAGAACAC+TGG | - | chr4_1:70945930-70945949 | None:intergenic | 30.0% | |
| ATTGTACTTAGAGGACATAG+AGG | + | chr4_1:70944850-70944869 | Msa0569130:CDS | 35.0% | |
| CTCACTGTTTGTATTATTGG+AGG | - | chr4_1:70944896-70944915 | None:intergenic | 35.0% | |
| GCTCTCACTGTTTGTATTAT+TGG | - | chr4_1:70944899-70944918 | None:intergenic | 35.0% | |
| TGTTAGATCAGCAATTCAAG+AGG | + | chr4_1:70945263-70945282 | Msa0569130:CDS | 35.0% | |
| ! | TTTTCCTTACTACATGGATG+AGG | + | chr4_1:70945580-70945599 | Msa0569130:CDS | 35.0% |
| ! | AATTGAAGTTGTATAGCGGA+AGG | - | chr4_1:70945664-70945683 | None:intergenic | 35.0% |
| AAAGCTTGAAACTCTGATGA+AGG | + | chr4_1:70945715-70945734 | Msa0569130:CDS | 35.0% | |
| !! | AATCAGTTGGTAAGATGAGA+AGG | + | chr4_1:70945822-70945841 | Msa0569130:CDS | 35.0% |
| ATTGTACTTAGAGGACATAG+AGG | + | chr4_1:70944850-70944869 | Msa0569130:CDS | 35.0% | |
| CTCACTGTTTGTATTATTGG+AGG | - | chr4_1:70944896-70944915 | None:intergenic | 35.0% | |
| GCTCTCACTGTTTGTATTAT+TGG | - | chr4_1:70944899-70944918 | None:intergenic | 35.0% | |
| TGTTAGATCAGCAATTCAAG+AGG | + | chr4_1:70945263-70945282 | Msa0569130:CDS | 35.0% | |
| ! | TTTTCCTTACTACATGGATG+AGG | + | chr4_1:70945580-70945599 | Msa0569130:CDS | 35.0% |
| ! | AATTGAAGTTGTATAGCGGA+AGG | - | chr4_1:70945664-70945683 | None:intergenic | 35.0% |
| AAAGCTTGAAACTCTGATGA+AGG | + | chr4_1:70945715-70945734 | Msa0569130:CDS | 35.0% | |
| !! | AATCAGTTGGTAAGATGAGA+AGG | + | chr4_1:70945822-70945841 | Msa0569130:CDS | 35.0% |
| TAATGTGGTTCTTCTATGCC+AGG | + | chr4_1:70944823-70944842 | Msa0569130:intron | 40.0% | |
| CCTCTAAGTACAATGTATCC+TGG | - | chr4_1:70944844-70944863 | None:intergenic | 40.0% | |
| CCAGGATACATTGTACTTAG+AGG | + | chr4_1:70944841-70944860 | Msa0569130:intron | 40.0% | |
| ACTTAGAGGACATAGAGGAA+AGG | + | chr4_1:70944855-70944874 | Msa0569130:CDS | 40.0% | |
| CTTAGAGGACATAGAGGAAA+GGG | + | chr4_1:70944856-70944875 | Msa0569130:CDS | 40.0% | |
| GACATAGAGGAAAGGGAAAA+CGG | + | chr4_1:70944863-70944882 | Msa0569130:CDS | 40.0% | |
| ACATAGAGGAAAGGGAAAAC+GGG | + | chr4_1:70944864-70944883 | Msa0569130:CDS | 40.0% | |
| CGCAAGACTAAGAACAAAAG+AGG | + | chr4_1:70945108-70945127 | Msa0569130:CDS | 40.0% | |
| TTGAGCAAATCATGTCCGTA+AGG | - | chr4_1:70945219-70945238 | None:intergenic | 40.0% | |
| !! | AAACGTGGATTAGAGAATCG+TGG | + | chr4_1:70945398-70945417 | Msa0569130:intron | 40.0% |
| GGGTTATGTTGGTGTAAAAC+CGG | + | chr4_1:70945541-70945560 | Msa0569130:intron | 40.0% | |
| GGTTATGTTGGTGTAAAACC+GGG | + | chr4_1:70945542-70945561 | Msa0569130:CDS | 40.0% | |
| AAACTAACTCTAGTCCATCC+CGG | - | chr4_1:70945563-70945582 | None:intergenic | 40.0% | |
| ATGCTTGGAGAAGGGAATTT+GGG | - | chr4_1:70945887-70945906 | None:intergenic | 40.0% | |
| TAATGTGGTTCTTCTATGCC+AGG | + | chr4_1:70944823-70944842 | Msa0569130:intron | 40.0% | |
| CCTCTAAGTACAATGTATCC+TGG | - | chr4_1:70944844-70944863 | None:intergenic | 40.0% | |
| CCAGGATACATTGTACTTAG+AGG | + | chr4_1:70944841-70944860 | Msa0569130:intron | 40.0% | |
| ACTTAGAGGACATAGAGGAA+AGG | + | chr4_1:70944855-70944874 | Msa0569130:CDS | 40.0% | |
| CTTAGAGGACATAGAGGAAA+GGG | + | chr4_1:70944856-70944875 | Msa0569130:CDS | 40.0% | |
| GACATAGAGGAAAGGGAAAA+CGG | + | chr4_1:70944863-70944882 | Msa0569130:CDS | 40.0% | |
| ACATAGAGGAAAGGGAAAAC+GGG | + | chr4_1:70944864-70944883 | Msa0569130:CDS | 40.0% | |
| CGCAAGACTAAGAACAAAAG+AGG | + | chr4_1:70945108-70945127 | Msa0569130:CDS | 40.0% | |
| TTGAGCAAATCATGTCCGTA+AGG | - | chr4_1:70945219-70945238 | None:intergenic | 40.0% | |
| !! | AAACGTGGATTAGAGAATCG+TGG | + | chr4_1:70945398-70945417 | Msa0569130:intron | 40.0% |
| GGGTTATGTTGGTGTAAAAC+CGG | + | chr4_1:70945541-70945560 | Msa0569130:intron | 40.0% | |
| GGTTATGTTGGTGTAAAACC+GGG | + | chr4_1:70945542-70945561 | Msa0569130:CDS | 40.0% | |
| AAACTAACTCTAGTCCATCC+CGG | - | chr4_1:70945563-70945582 | None:intergenic | 40.0% | |
| ATGCTTGGAGAAGGGAATTT+GGG | - | chr4_1:70945887-70945906 | None:intergenic | 40.0% | |
| CATAGAGGAAAGGGAAAACG+GGG | + | chr4_1:70944865-70944884 | Msa0569130:CDS | 45.0% | |
| ATAGAGGAAAGGGAAAACGG+GGG | + | chr4_1:70944866-70944885 | Msa0569130:CDS | 45.0% | |
| ACAAACAGTGAGAGCAGCTT+TGG | + | chr4_1:70944904-70944923 | Msa0569130:CDS | 45.0% | |
| !! | TGAGAGCAGCTTTGGCATTT+TGG | + | chr4_1:70944912-70944931 | Msa0569130:CDS | 45.0% |
| !! | GAGAGCAGCTTTGGCATTTT+GGG | + | chr4_1:70944913-70944932 | Msa0569130:CDS | 45.0% |
| CTTGCGTTCGCTTCTATTGA+TGG | - | chr4_1:70945094-70945113 | None:intergenic | 45.0% | |
| !! | CTCTTTGGAATACAAGCTCG+AGG | + | chr4_1:70945174-70945193 | Msa0569130:CDS | 45.0% |
| ! | TTTGGAATACAAGCTCGAGG+CGG | + | chr4_1:70945177-70945196 | Msa0569130:CDS | 45.0% |
| ATGTTGGTGTAAAACCGGGA+TGG | + | chr4_1:70945546-70945565 | Msa0569130:CDS | 45.0% | |
| TCCTTACTACATGGATGAGG+AGG | + | chr4_1:70945583-70945602 | Msa0569130:CDS | 45.0% | |
| TCCTCCTCATCCATGTAGTA+AGG | - | chr4_1:70945587-70945606 | None:intergenic | 45.0% | |
| CATGCTTGGAGAAGGGAATT+TGG | - | chr4_1:70945888-70945907 | None:intergenic | 45.0% | |
| CAAATTCCCTTCTCCAAGCA+TGG | + | chr4_1:70945886-70945905 | Msa0569130:CDS | 45.0% | |
| AGAACACTGGGATCTACATC+TGG | - | chr4_1:70945917-70945936 | None:intergenic | 45.0% | |
| CATAGAGGAAAGGGAAAACG+GGG | + | chr4_1:70944865-70944884 | Msa0569130:CDS | 45.0% | |
| ATAGAGGAAAGGGAAAACGG+GGG | + | chr4_1:70944866-70944885 | Msa0569130:CDS | 45.0% | |
| ACAAACAGTGAGAGCAGCTT+TGG | + | chr4_1:70944904-70944923 | Msa0569130:CDS | 45.0% | |
| !! | TGAGAGCAGCTTTGGCATTT+TGG | + | chr4_1:70944912-70944931 | Msa0569130:CDS | 45.0% |
| !! | GAGAGCAGCTTTGGCATTTT+GGG | + | chr4_1:70944913-70944932 | Msa0569130:CDS | 45.0% |
| CTTGCGTTCGCTTCTATTGA+TGG | - | chr4_1:70945094-70945113 | None:intergenic | 45.0% | |
| !! | CTCTTTGGAATACAAGCTCG+AGG | + | chr4_1:70945174-70945193 | Msa0569130:CDS | 45.0% |
| ! | TTTGGAATACAAGCTCGAGG+CGG | + | chr4_1:70945177-70945196 | Msa0569130:CDS | 45.0% |
| ATGTTGGTGTAAAACCGGGA+TGG | + | chr4_1:70945546-70945565 | Msa0569130:CDS | 45.0% | |
| TCCTTACTACATGGATGAGG+AGG | + | chr4_1:70945583-70945602 | Msa0569130:CDS | 45.0% | |
| TCCTCCTCATCCATGTAGTA+AGG | - | chr4_1:70945587-70945606 | None:intergenic | 45.0% | |
| CATGCTTGGAGAAGGGAATT+TGG | - | chr4_1:70945888-70945907 | None:intergenic | 45.0% | |
| CAAATTCCCTTCTCCAAGCA+TGG | + | chr4_1:70945886-70945905 | Msa0569130:CDS | 45.0% | |
| AGAACACTGGGATCTACATC+TGG | - | chr4_1:70945917-70945936 | None:intergenic | 45.0% | |
| TTGGAATACAAGCTCGAGGC+GGG | + | chr4_1:70945178-70945197 | Msa0569130:CDS | 50.0% | |
| TGTGCTTGTGCTGGACCTTA+CGG | + | chr4_1:70945201-70945220 | Msa0569130:CDS | 50.0% | |
| GACAGACCATGCTTGGAGAA+GGG | - | chr4_1:70945895-70945914 | None:intergenic | 50.0% | |
| ACATCTGGACAGACCATGCT+TGG | - | chr4_1:70945902-70945921 | None:intergenic | 50.0% | |
| TTGGAATACAAGCTCGAGGC+GGG | + | chr4_1:70945178-70945197 | Msa0569130:CDS | 50.0% | |
| TGTGCTTGTGCTGGACCTTA+CGG | + | chr4_1:70945201-70945220 | Msa0569130:CDS | 50.0% | |
| GACAGACCATGCTTGGAGAA+GGG | - | chr4_1:70945895-70945914 | None:intergenic | 50.0% | |
| ACATCTGGACAGACCATGCT+TGG | - | chr4_1:70945902-70945921 | None:intergenic | 50.0% | |
| GGACAGACCATGCTTGGAGA+AGG | - | chr4_1:70945896-70945915 | None:intergenic | 55.0% | |
| GGACAGACCATGCTTGGAGA+AGG | - | chr4_1:70945896-70945915 | None:intergenic | 55.0% | |
| CGAGGCGGGTGTGCTTGTGC+TGG | + | chr4_1:70945192-70945211 | Msa0569130:CDS | 70.0% | |
| CGAGGCGGGTGTGCTTGTGC+TGG | + | chr4_1:70945192-70945211 | Msa0569130:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 70944769 | 70945952 | 70944769 | ID=Msa0569130;Name=Msa0569130 |
| chr4_1 | mRNA | 70944769 | 70945952 | 70944769 | ID=Msa0569130-mRNA-1;Parent=Msa0569130;Name=Msa0569130-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.75|1|1|4|0|274 |
| chr4_1 | exon | 70944769 | 70944774 | 70944769 | ID=Msa0569130-mRNA-1:exon:23943;Parent=Msa0569130-mRNA-1 |
| chr4_1 | exon | 70944845 | 70945068 | 70944845 | ID=Msa0569130-mRNA-1:exon:23944;Parent=Msa0569130-mRNA-1 |
| chr4_1 | exon | 70945101 | 70945284 | 70945101 | ID=Msa0569130-mRNA-1:exon:23945;Parent=Msa0569130-mRNA-1 |
| chr4_1 | exon | 70945542 | 70945952 | 70945542 | ID=Msa0569130-mRNA-1:exon:23946;Parent=Msa0569130-mRNA-1 |
| chr4_1 | CDS | 70944769 | 70944774 | 70944769 | ID=Msa0569130-mRNA-1:cds;Parent=Msa0569130-mRNA-1 |
| chr4_1 | CDS | 70944845 | 70945068 | 70944845 | ID=Msa0569130-mRNA-1:cds;Parent=Msa0569130-mRNA-1 |
| chr4_1 | CDS | 70945101 | 70945284 | 70945101 | ID=Msa0569130-mRNA-1:cds;Parent=Msa0569130-mRNA-1 |
| chr4_1 | CDS | 70945542 | 70945952 | 70945542 | ID=Msa0569130-mRNA-1:cds;Parent=Msa0569130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
