AlfalfaGEDB | Msa1166550

M. sativa cultivar zhongmu-4 / Msa1166550

KEGG: K00430
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166550	KEH24352.1	89.150	341	10	2	1	335	1	320	0.0	617

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166550	sp\|O23044\|PER3_ARATH	51.917	339	132	7	8	335	7	325	3.52e-111	329

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166550	G8A179	89.150	341	10	2	1	335	1	320	0.0	617

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0059880	Msa1166550	0.817378	3.401254e-52	-8.615850e-47
Msa0079830	Msa1166550	0.800785	1.224691e-48	-8.615850e-47
Msa0150910	Msa1166550	0.814844	1.252598e-51	-8.615850e-47
Msa0190670	Msa1166550	0.814801	1.280563e-51	-8.615850e-47
Msa0220090	Msa1166550	0.801842	7.438909e-49	-8.615850e-47
Msa0252930	Msa1166550	0.800964	1.125732e-48	-8.615850e-47
Msa0274250	Msa1166550	0.808154	3.559767e-50	-8.615850e-47
Msa0535570	Msa1166550	0.801058	1.077082e-48	-8.615850e-47
Msa0538050	Msa1166550	-0.802782	4.765272e-49	-8.615850e-47
Msa0569100	Msa1166550	0.822742	2.013308e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166550	MtrunA17_Chr7g0268501	89.150	341	10	2	1	335	1	320	0.0	617
Msa1166550	MtrunA17_Chr7g0268521	89.150	341	10	2	1	335	1	320	0.0	617
Msa1166550	MtrunA17_Chr4g0024121	50.144	347	140	6	1	335	1	326	1.89e-113	332
Msa1166550	MtrunA17_Chr2g0322861	49.714	350	136	8	1	335	62	386	3.22e-109	323
Msa1166550	MtrunA17_Chr1g0164891	47.188	320	136	7	29	335	93	392	4.39e-86	264
Msa1166550	MtrunA17_Chr8g0371381	42.683	328	149	7	19	335	20	319	2.34e-85	260
Msa1166550	MtrunA17_Chr2g0279041	42.216	334	176	5	5	335	6	325	6.81e-83	254
Msa1166550	MtrunA17_Chr3g0128061	42.941	340	163	7	6	335	8	326	7.81e-83	254
Msa1166550	MtrunA17_Chr5g0405991	42.730	337	150	9	12	335	10	316	8.62e-82	251
Msa1166550	MtrunA17_Chr2g0292211	41.176	340	168	6	6	335	24	341	1.38e-80	249

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166550	AT1G05260.1	51.917	339	132	7	8	335	7	325	3.58e-112	329
Msa1166550	AT4G11290.1	51.327	339	135	7	7	335	8	326	6.32e-109	321
Msa1166550	AT1G05240.1	47.785	316	138	6	28	335	29	325	9.08e-101	300
Msa1166550	AT1G05250.1	47.785	316	138	6	28	335	29	325	9.08e-101	300
Msa1166550	AT3G01190.1	48.824	340	143	7	4	335	5	321	2.33e-99	296
Msa1166550	AT3G21770.1	48.182	330	140	7	16	334	18	327	8.48e-99	295
Msa1166550	AT5G15180.1	49.216	319	133	6	25	335	32	329	4.52e-98	293
Msa1166550	AT2G39040.1	47.273	330	134	7	23	335	44	350	2.16e-96	290
Msa1166550	AT5G42180.1	40.469	341	169	6	3	334	1	316	1.57e-81	250
Msa1166550	AT5G64120.1	42.492	313	157	7	26	335	36	328	1.06e-79	246

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Find 68 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCAGTCTTATCAACT+TGG	0.547582	7_4:+58639955	None:intergenic
AAAGCACCATAGAAGCTACA+AGG	0.611637	7_4:+58640107	None:intergenic
AAAGCTTACTCTTCATGACT+TGG	0.493798	7_4:-58639376	Msa1166550:CDS
AACAATGTTTCTAGATTGCT+TGG	0.397011	7_4:+58638875	None:intergenic
AAGCCTGCTAATGATAAATT+AGG	0.273981	7_4:+58639718	None:intergenic
AAGGTGCTGGAATATTGATT+AGG	0.388624	7_4:+58639439	None:intergenic
AATCTAGAAACATTGTTAAT+GGG	0.340860	7_4:-58638869	Msa1166550:CDS
AGAAGACATAAAAGAAGCTT+TGG	0.382183	7_4:-58639686	Msa1166550:CDS
AGACATAAAAGAAGCTTTGG+AGG	0.490687	7_4:-58639683	Msa1166550:CDS
AGCAACGTGGGAAGTGCTTA+CGG	0.416975	7_4:-58639499	Msa1166550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAAATTGTACTAAGTGAC+AGG	-	chr7_4:58637792-58637811	Msa1166550:intron	30.0%
AAGCCTGCTAATGATAAATT+AGG	+	chr7_4:58637901-58637920	None:intergenic	30.0%
AGAAGACATAAAAGAAGCTT+TGG	-	chr7_4:58637930-58637949	Msa1166550:intron	30.0%
AGTTTAATGATAAAGCAACG+TGG	-	chr7_4:58638104-58638123	Msa1166550:intron	30.0%
GTTTAATGATAAAGCAACGT+GGG	-	chr7_4:58638105-58638124	Msa1166550:intron	30.0%
TCAAATGTTGTTGAGCTATT+TGG	+	chr7_4:58638653-58638672	None:intergenic	30.0%
AGCTTGTATTGTATCTAACT+TGG	+	chr7_4:58638890-58638909	None:intergenic	30.0%
ATGATGATATAAAGTGATGG+TGG	+	chr7_4:58639051-58639070	None:intergenic	30.0%
TTCACTAAAAAACAGAGTTG+TGG	+	chr7_4:58639118-58639137	None:intergenic	30.0%
AAATTCAAAACCATGGATTC+AGG	-	chr7_4:58639217-58639236	Msa1166550:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	58637492	58640146	58637492	ID=Msa1166550;Name=Msa1166550
chr7_4	mRNA	58637492	58640146	58637492	ID=Msa1166550-mRNA-1;Parent=Msa1166550;Name=Msa1166550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|0.6\|0.5\|6\|0\|335
chr7_4	exon	58639937	58640146	58639937	ID=Msa1166550-mRNA-1:exon:18047;Parent=Msa1166550-mRNA-1
chr7_4	exon	58639624	58639803	58639624	ID=Msa1166550-mRNA-1:exon:18046;Parent=Msa1166550-mRNA-1
chr7_4	exon	58639364	58639532	58639364	ID=Msa1166550-mRNA-1:exon:18045;Parent=Msa1166550-mRNA-1
chr7_4	exon	58638950	58639152	58638950	ID=Msa1166550-mRNA-1:exon:18044;Parent=Msa1166550-mRNA-1
chr7_4	exon	58638823	58638931	58638823	ID=Msa1166550-mRNA-1:exon:18043;Parent=Msa1166550-mRNA-1
chr7_4	exon	58637492	58637628	58637492	ID=Msa1166550-mRNA-1:exon:18042;Parent=Msa1166550-mRNA-1
chr7_4	CDS	58639937	58640146	58639937	ID=Msa1166550-mRNA-1:cds;Parent=Msa1166550-mRNA-1
chr7_4	CDS	58639624	58639803	58639624	ID=Msa1166550-mRNA-1:cds;Parent=Msa1166550-mRNA-1
chr7_4	CDS	58639364	58639532	58639364	ID=Msa1166550-mRNA-1:cds;Parent=Msa1166550-mRNA-1
chr7_4	CDS	58638950	58639152	58638950	ID=Msa1166550-mRNA-1:cds;Parent=Msa1166550-mRNA-1
chr7_4	CDS	58638823	58638931	58638823	ID=Msa1166550-mRNA-1:cds;Parent=Msa1166550-mRNA-1
chr7_4	CDS	58637492	58637628	58637492	ID=Msa1166550-mRNA-1:cds;Parent=Msa1166550-mRNA-1

Gene Sequence

>Msa1166550

ATGAAGATGAAATTCTTCCTTGTAGCTTCTATGGTGCTTTTCTGTTTCATTGGGATTAGTGAAGGAGGCAGCCTCAGGAAGAATTTTTATAAGAAGTCATGTCCTCAAGCTGAGGAGATTGTTAAGAACGTAACCCTACAACATGTCTCTTCAAGGCCTGAGCTGCCAGCCAAGTTGATAAGACTGCATTTTCATGACTGTTTTGTTAGGGGGTGTGACGCATCGGTTTTGTTGGAGTCCACTGCTGGTAACACTGCGGAGAAGGATGCCATTCCTAATTTATCATTAGCAGGCTTTGATCTGATAGAAGACATAAAAGAAGCTTTGGAGGAGAAATGTCCAGGAATTGTATCATGTGCTGATATACTCACATTGGCTACTAGAGATGCTTTTAATGATAAAGCAACGTGGGAAGTGCTTACGGGTAGAAGAGATGGTACTGTGTCCAGAAGCATTGAAGCCCTAATCAATATTCCAGCACCTTTCCATAACATCACTCAGCTCAGACAAATCTTTGCTAGTAAAAAGCTTACTCTTCATGACTTGGTTGTATTATCAGGAGCACACACAATTGGAGTAGGACATTGCAACTTATTCAGCAACAGGCTTTTCAACTTCACTGGAAAAGGTGATCAAGATCCATCTCTGAATCCAACTTATGCAAATTTCTTGAAGACCAAATGCCAAGGCCTAAGTGACACCACCACAACAGTAGAGATGGATCCAAATAGCTCAACAACATTTGACAATGACTATTATCCTGGTCTCTTCACATCAGATGCTGCTCTTCTAACAACCAAGCAATCTAGAAACATTGTTAATGGGTTAATTTTAGTTTGGACAAGTGGATGTTGGGGTTCAACTTGGACCAGGACCCTTGTTAATGAATTGGTTTCACAAAATAAATTCTTCACTGAGTTTTCTCAGTCAATGAAGAGGATGGGAGCTATTGAGGTCCTCACTGGTTCGAATGGAGAAATTAGAAGGAAGTGCTCTGTTGTTAATTAA

Protein sequence

>Msa1166550

MKMKFFLVASMVLFCFIGISEGGSLRKNFYKKSCPQAEEIVKNVTLQHVSSRPELPAKLIRLHFHDCFVRGCDASVLLESTAGNTAEKDAIPNLSLAGFDLIEDIKEALEEKCPGIVSCADILTLATRDAFNDKATWEVLTGRRDGTVSRSIEALINIPAPFHNITQLRQIFASKKLTLHDLVVLSGAHTIGVGHCNLFSNRLFNFTGKGDQDPSLNPTYANFLKTKCQGLSDTTTTVEMDPNSSTTFDNDYYPGLFTSDAALLTTKQSRNIVNGLILVWTSGCWGSTWTRTLVNELVSQNKFFTEFSQSMKRMGAIEVLTGSNGEIRRKCSVVN*