AlfalfaGEDB | Msa1041650

M. sativa cultivar zhongmu-4 / Msa1041650

KEGG: K00430
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041650	KEH24352.1	88.685	327	10	2	1	321	1	306	0.0	588

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041650	sp\|O23044\|PER3_ARATH	51.385	325	127	7	8	321	7	311	4.68e-104	310

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041650	G8A179	88.685	327	10	2	1	321	1	306	0.0	588

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa1041650	0.807021	6.195262e-50	-8.615850e-47
Msa0059880	Msa1041650	0.826367	2.820518e-54	-8.615850e-47
Msa0079830	Msa1041650	0.811493	6.809727e-51	-8.615850e-47
Msa0143280	Msa1041650	-0.800066	1.715873e-48	-8.615850e-47
Msa0150910	Msa1041650	0.824296	8.716158e-54	-8.615850e-47
Msa0190670	Msa1041650	0.819127	1.366911e-52	-8.615850e-47
Msa0252930	Msa1041650	0.807933	3.967095e-50	-8.615850e-47
Msa0274250	Msa1041650	0.811673	6.224738e-51	-8.615850e-47
Msa0374040	Msa1041650	0.806713	7.197659e-50	-8.615850e-47
Msa0535570	Msa1041650	0.808192	3.494142e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041650	MtrunA17_Chr7g0268501	88.685	327	10	2	1	321	1	306	0.0	588
Msa1041650	MtrunA17_Chr7g0268521	88.685	327	10	2	1	321	1	306	0.0	588
Msa1041650	MtrunA17_Chr4g0024121	50.453	331	131	6	1	319	1	310	1.45e-106	314
Msa1041650	MtrunA17_Chr2g0322861	49.405	336	130	8	1	321	62	372	2.91e-102	305
Msa1041650	MtrunA17_Chr8g0371381	42.532	308	146	5	19	317	20	305	3.78e-82	251
Msa1041650	MtrunA17_Chr5g0405991	43.533	317	144	7	12	317	10	302	6.40e-80	245
Msa1041650	MtrunA17_Chr1g0164891	46.405	306	131	7	29	321	93	378	1.52e-78	244
Msa1041650	MtrunA17_Chr1g0157051	44.000	275	142	4	11	274	7	280	7.79e-77	238
Msa1041650	MtrunA17_Chr2g0279041	43.046	302	156	4	22	321	24	311	1.47e-76	237
Msa1041650	MtrunA17_Chr3g0128061	42.025	326	158	7	6	321	8	312	5.90e-76	236

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1041650	AT1G05260.1	51.385	325	127	7	8	321	7	311	4.76e-105	310
Msa1041650	AT4G11290.1	50.462	325	131	7	7	321	8	312	1.19e-100	299
Msa1041650	AT3G01190.1	48.773	326	136	7	4	321	5	307	7.95e-94	281
Msa1041650	AT1G05240.1	47.351	302	132	6	28	321	29	311	3.23e-93	280
Msa1041650	AT1G05250.1	47.351	302	132	6	28	321	29	311	3.23e-93	280
Msa1041650	AT3G21770.1	47.634	317	135	7	16	321	18	314	5.72e-93	280
Msa1041650	AT2G39040.1	47.452	314	127	6	23	321	44	334	1.47e-92	279
Msa1041650	AT5G15180.1	48.852	305	127	6	25	321	32	315	7.29e-91	274
Msa1041650	AT5G42180.1	44.444	279	146	3	3	273	1	278	2.89e-80	247
Msa1041650	AT5G51890.1	42.258	310	141	8	23	319	24	308	8.19e-74	230

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Find 65 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCAGTCTTATCAACT+TGG	0.547582	7_1:+79223609	None:intergenic
AAAGCACCATAGAAGCTACA+AGG	0.611637	7_1:+79223761	None:intergenic
AAAGCTTACTCTTCATGACT+TGG	0.493798	7_1:-79223030	Msa1041650:CDS
AACAATGTTTCTAGATTGCT+TGG	0.397011	7_1:+79222529	None:intergenic
AAGCCTGCTAATGATAAATT+AGG	0.273981	7_1:+79223372	None:intergenic
AAGGTGCTGGAATATTGATT+AGG	0.388624	7_1:+79223093	None:intergenic
AATCTAGAAACATTGTTAAT+GGG	0.340860	7_1:-79222523	Msa1041650:CDS
AGAAGACATAAAAGAAGCTT+TGG	0.382183	7_1:-79223340	Msa1041650:CDS
AGACATAAAAGAAGCTTTGG+AGG	0.490687	7_1:-79223337	Msa1041650:CDS
AGCAACGTGGGAAGTGCTTA+CGG	0.416975	7_1:-79223153	Msa1041650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAAATTGTACTAAGTGAC+AGG	-	chr7_1:79221491-79221510	Msa1041650:intron	30.0%
AAGCCTGCTAATGATAAATT+AGG	+	chr7_1:79221600-79221619	None:intergenic	30.0%
AGAAGACATAAAAGAAGCTT+TGG	-	chr7_1:79221629-79221648	Msa1041650:intron	30.0%
AGTTTAATGATAAAGCAACG+TGG	-	chr7_1:79221803-79221822	Msa1041650:intron	30.0%
GTTTAATGATAAAGCAACGT+GGG	-	chr7_1:79221804-79221823	Msa1041650:intron	30.0%
TCAAATGTTGTTGAGCTATT+TGG	+	chr7_1:79222352-79222371	None:intergenic	30.0%
AGCTTGTATTGTATCTAACT+TGG	+	chr7_1:79222589-79222608	None:intergenic	30.0%
ATGATGATATAAAGTGATGG+TGG	+	chr7_1:79222750-79222769	None:intergenic	30.0%
TTCACTAAAAAACAGAGTTG+TGG	+	chr7_1:79222817-79222836	None:intergenic	30.0%
AAATTCAAAACCATGGATTC+AGG	-	chr7_1:79222916-79222935	Msa1041650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	79221191	79223800	79221191	ID=Msa1041650;Name=Msa1041650
chr7_1	mRNA	79221191	79223800	79221191	ID=Msa1041650-mRNA-1;Parent=Msa1041650;Name=Msa1041650-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0\|0\|1\|0.6\|0.5\|6\|0\|321
chr7_1	exon	79223591	79223800	79223591	ID=Msa1041650-mRNA-1:exon:21362;Parent=Msa1041650-mRNA-1
chr7_1	exon	79223278	79223457	79223278	ID=Msa1041650-mRNA-1:exon:21361;Parent=Msa1041650-mRNA-1
chr7_1	exon	79223018	79223186	79223018	ID=Msa1041650-mRNA-1:exon:21360;Parent=Msa1041650-mRNA-1
chr7_1	exon	79222604	79222806	79222604	ID=Msa1041650-mRNA-1:exon:21359;Parent=Msa1041650-mRNA-1
chr7_1	exon	79222477	79222585	79222477	ID=Msa1041650-mRNA-1:exon:21358;Parent=Msa1041650-mRNA-1
chr7_1	exon	79221191	79221282	79221191	ID=Msa1041650-mRNA-1:exon:21357;Parent=Msa1041650-mRNA-1
chr7_1	CDS	79223591	79223800	79223591	ID=Msa1041650-mRNA-1:cds;Parent=Msa1041650-mRNA-1
chr7_1	CDS	79223278	79223457	79223278	ID=Msa1041650-mRNA-1:cds;Parent=Msa1041650-mRNA-1
chr7_1	CDS	79223018	79223186	79223018	ID=Msa1041650-mRNA-1:cds;Parent=Msa1041650-mRNA-1
chr7_1	CDS	79222604	79222806	79222604	ID=Msa1041650-mRNA-1:cds;Parent=Msa1041650-mRNA-1
chr7_1	CDS	79222477	79222585	79222477	ID=Msa1041650-mRNA-1:cds;Parent=Msa1041650-mRNA-1
chr7_1	CDS	79221191	79221282	79221191	ID=Msa1041650-mRNA-1:cds;Parent=Msa1041650-mRNA-1

Gene Sequence

>Msa1041650

ATGAAGATGAAATTCTTCCTTGTAGCTTCTATGGTGCTTTTCTGTTTCATTGGGATTAGTGAAGGAGGCAGCCTCAGGAAGAATTTTTATAAGAAGTCATGTCCTCAAGCTGAGGAGATTGTTAAGAACGTAACCCTACAACATGTCTCTTCAAGGCCTGAGCTGCCAGCCAAGTTGATAAGACTGCATTTTCATGACTGTTTTGTTAGGGGGTGTGACGCATCGGTTTTGTTGGAGTCCACTGCTGGTAACACTGCGGAGAAGGATGCCATTCCTAATTTATCATTAGCAGGCTTTGATCTGATAGAAGACATAAAAGAAGCTTTGGAGGAGAAATGTCCAGGAATTGTATCATGTGCTGATATACTCACATTGGCTACTAGAGATGCTTTTAATGATAAAGCAACGTGGGAAGTGCTTACGGGTAGAAGAGATGGTACTGTGTCCAGAAGCATTGAAGCCCTAATCAATATTCCAGCACCTTTCCATAACATCACTCAGCTCAGACAAATCTTTGCTAGTAAAAAGCTTACTCTTCATGACTTGGTTGTATTATCAGGAGCACACACAATTGGAGTAGGACATTGCAACTTATTCAGCAACAGGCTTTTCAACTTCACTGGAAAAGGTGATCAAGATCCATCTCTGAATCCAACTTATGCAAATTTCTTGAAGACCAAATGCCAAGGCCTAAGTGACACCACCACAACAGTAGAGATGGATCCAAATAGCTCAACAACATTTGACAATGACTATTATCCTGGTCTCTTCACATCAGATGCTGCTCTTCTAACAACCAAGCAATCTAGAAACATTGTTAATGGGTTAATTTTAGTTTGGACAAGTGGATGTTGGGGTTCAACTTGGACCAGGACCCTTGTTAATGAATTGGTTTCACAAAATAAATTCTTCACTGAGTTTTCTCAGTCAATGAAGAGGATGGGAGCTATTGAGGTCCTCACT

Protein sequence

>Msa1041650

MKMKFFLVASMVLFCFIGISEGGSLRKNFYKKSCPQAEEIVKNVTLQHVSSRPELPAKLIRLHFHDCFVRGCDASVLLESTAGNTAEKDAIPNLSLAGFDLIEDIKEALEEKCPGIVSCADILTLATRDAFNDKATWEVLTGRRDGTVSRSIEALINIPAPFHNITQLRQIFASKKLTLHDLVVLSGAHTIGVGHCNLFSNRLFNFTGKGDQDPSLNPTYANFLKTKCQGLSDTTTTVEMDPNSSTTFDNDYYPGLFTSDAALLTTKQSRNIVNGLILVWTSGCWGSTWTRTLVNELVSQNKFFTEFSQSMKRMGAIEVLT