Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570970 | XP_013446960.1 | 100.000 | 118 | 0 | 0 | 1 | 118 | 1 | 118 | 8.83e-80 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570970 | sp|Q9SW27|MUB3_ARATH | 81.356 | 118 | 22 | 0 | 1 | 118 | 1 | 118 | 7.33e-70 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570970 | I3SRV2 | 100.000 | 118 | 0 | 0 | 1 | 118 | 1 | 118 | 4.22e-80 | 240 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0570970 | 0.817971 | 2.500517e-52 | -8.615850e-47 |
| Msa0043980 | Msa0570970 | 0.811715 | 6.094689e-51 | -8.615850e-47 |
| Msa0068740 | Msa0570970 | -0.806937 | 6.454866e-50 | -8.615850e-47 |
| Msa0109900 | Msa0570970 | 0.823279 | 1.508564e-53 | -8.615850e-47 |
| Msa0117770 | Msa0570970 | 0.814593 | 1.423679e-51 | -8.615850e-47 |
| Msa0151180 | Msa0570970 | 0.828304 | 9.682799e-55 | -8.615850e-47 |
| Msa0187950 | Msa0570970 | 0.800235 | 1.585086e-48 | -8.615850e-47 |
| Msa0201070 | Msa0570970 | 0.819491 | 1.129608e-52 | -8.615850e-47 |
| Msa0426900 | Msa0570970 | 0.802026 | 6.819747e-49 | -8.615850e-47 |
| Msa0436760 | Msa0570970 | 0.800031 | 1.743993e-48 | -8.615850e-47 |
| Msa0329350 | Msa0570970 | 0.810911 | 9.108583e-51 | -8.615850e-47 |
| Msa0570820 | Msa0570970 | 0.872490 | 3.054887e-67 | -8.615850e-47 |
| Msa0570970 | Msa0571010 | 0.823812 | 1.132220e-53 | -8.615850e-47 |
| Msa0570970 | Msa0828850 | 0.815759 | 7.841169e-52 | -8.615850e-47 |
| Msa0570970 | Msa0861540 | 0.808832 | 2.551376e-50 | -8.615850e-47 |
| Msa0570970 | Msa0892080 | 0.813903 | 2.022601e-51 | -8.615850e-47 |
| Msa0570970 | Msa0999100 | 0.814351 | 1.610788e-51 | -8.615850e-47 |
| Msa0570970 | Msa1035480 | 0.801442 | 8.988780e-49 | -8.615850e-47 |
| Msa0570970 | Msa1091830 | 0.804532 | 2.064539e-49 | -8.615850e-47 |
| Msa0570970 | Msa1115430 | 0.819874 | 9.233578e-53 | -8.615850e-47 |
| Msa0570970 | Msa1162780 | 0.804134 | 2.498822e-49 | -8.615850e-47 |
| Msa0570970 | Msa1240510 | 0.814347 | 1.613476e-51 | -8.615850e-47 |
| Msa0570970 | Msa1392260 | 0.804285 | 2.324204e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570970 | MtrunA17_Chr8g0386041 | 100.000 | 118 | 0 | 0 | 1 | 118 | 1 | 118 | 8.12e-84 | 240 |
| Msa0570970 | MtrunA17_Chr7g0224251 | 64.407 | 118 | 42 | 0 | 1 | 118 | 1 | 118 | 3.02e-57 | 173 |
| Msa0570970 | MtrunA17_Chr7g0224241 | 62.037 | 108 | 41 | 0 | 1 | 108 | 1 | 108 | 2.70e-48 | 157 |
| Msa0570970 | MtrunA17_Chr7g0268701 | 47.009 | 117 | 59 | 3 | 4 | 118 | 5 | 120 | 1.22e-34 | 115 |
| Msa0570970 | MtrunA17_Chr6g0454091 | 48.718 | 117 | 56 | 2 | 3 | 118 | 4 | 117 | 1.50e-33 | 113 |
| Msa0570970 | MtrunA17_Chr7g0218501 | 45.299 | 117 | 60 | 2 | 4 | 118 | 5 | 119 | 2.61e-31 | 107 |
| Msa0570970 | MtrunA17_Chr8g0386061 | 72.917 | 48 | 13 | 0 | 1 | 48 | 1 | 48 | 1.17e-20 | 79.0 |
| Msa0570970 | MtrunA17_Chr8g0386071 | 73.770 | 61 | 14 | 1 | 44 | 102 | 14 | 74 | 3.07e-20 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0570970 | AT4G24990.2 | 81.356 | 118 | 22 | 0 | 1 | 118 | 1 | 118 | 7.45e-71 | 207 |
| Msa0570970 | AT4G24990.1 | 81.356 | 118 | 22 | 0 | 1 | 118 | 1 | 118 | 7.45e-71 | 207 |
| Msa0570970 | AT3G26980.1 | 63.333 | 120 | 42 | 1 | 1 | 118 | 1 | 120 | 1.75e-53 | 164 |
| Msa0570970 | AT1G77870.1 | 49.167 | 120 | 59 | 1 | 1 | 118 | 1 | 120 | 7.55e-36 | 119 |
| Msa0570970 | AT1G22050.1 | 46.154 | 117 | 61 | 2 | 3 | 118 | 4 | 119 | 4.55e-35 | 117 |
| Msa0570970 | AT5G15460.2 | 47.826 | 115 | 57 | 1 | 4 | 115 | 5 | 119 | 1.30e-31 | 108 |
| Msa0570970 | AT5G15460.1 | 47.826 | 115 | 57 | 1 | 4 | 115 | 5 | 119 | 1.30e-31 | 108 |
| Msa0570970 | AT5G15460.4 | 47.826 | 115 | 57 | 1 | 4 | 115 | 5 | 119 | 1.30e-31 | 108 |
| Msa0570970 | AT3G01050.2 | 45.217 | 115 | 61 | 1 | 4 | 118 | 5 | 117 | 1.42e-31 | 108 |
| Msa0570970 | AT3G01050.3 | 45.217 | 115 | 61 | 1 | 4 | 118 | 5 | 117 | 1.42e-31 | 108 |
| Msa0570970 | AT3G01050.1 | 45.217 | 115 | 61 | 1 | 4 | 118 | 5 | 117 | 1.42e-31 | 108 |
| Msa0570970 | AT3G01050.4 | 45.217 | 115 | 61 | 1 | 4 | 118 | 5 | 117 | 1.42e-31 | 108 |
| Msa0570970 | AT3G01050.5 | 45.217 | 115 | 61 | 1 | 4 | 118 | 5 | 117 | 1.42e-31 | 108 |
| Msa0570970 | AT5G15460.3 | 47.143 | 70 | 34 | 1 | 49 | 115 | 24 | 93 | 1.81e-14 | 64.3 |
Find 39 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGAAAAGTTTGGGTTAA+TGG | 0.165799 | 4_1:+73442883 | Msa0570970:three_prime_UTR |
| TATATATTTATAGAAAAGTT+TGG | 0.233718 | 4_1:+73442875 | Msa0570970:three_prime_UTR |
| GATTAGTTCTGGTAAAATAT+TGG | 0.241614 | 4_1:+73441546 | Msa0570970:CDS |
| GAAGTGAAATTGATTAGTTC+TGG | 0.322349 | 4_1:+73441535 | Msa0570970:CDS |
| ACAAGAACAGACAACCTTCT+TGG | 0.322618 | 4_1:-73442722 | None:intergenic |
| TGAAATGCCGGAAGAAGATT+TGG | 0.328122 | 4_1:+73438466 | Msa0570970:exon |
| TTATACGATGGTTCTGATAT+TGG | 0.340742 | 4_1:+73438506 | Msa0570970:CDS |
| GGGATCGAATATTACCTTAC+TGG | 0.355719 | 4_1:-73438278 | None:intergenic |
| CTTCATTTGCTGACTTTGGC+AGG | 0.363564 | 4_1:-73441516 | None:intergenic |
| GCCATCTCTAGCAAAATCTA+AGG | 0.369339 | 4_1:+73441651 | Msa0570970:CDS |
| TTCACTTCATTTGCTGACTT+TGG | 0.374456 | 4_1:-73441520 | None:intergenic |
| GCACCATTTGGTGATATTGC+AGG | 0.375129 | 4_1:+73441598 | Msa0570970:CDS |
| AGTCAAAACAATCTTTGAAA+TGG | 0.377568 | 4_1:+73438226 | Msa0570970:five_prime_UTR |
| ATATCAACCAAATCTTCTTC+CGG | 0.380506 | 4_1:-73438473 | None:intergenic |
| TAAGATTAGGGTTTGAGTAA+AGG | 0.384097 | 4_1:+73438407 | Msa0570970:five_prime_UTR |
| ATTGTCTCTGATTGGCCTAA+AGG | 0.386290 | 4_1:+73438578 | Msa0570970:CDS |
| ATCAAAAGAAAGATAAGATT+AGG | 0.389904 | 4_1:+73438394 | Msa0570970:five_prime_UTR |
| TCAAAAGAAAGATAAGATTA+GGG | 0.393619 | 4_1:+73438395 | Msa0570970:five_prime_UTR |
| ATTTGGTTGATATCAAGTTT+AGG | 0.398560 | 4_1:+73438483 | Msa0570970:CDS |
| ATATATTTATAGAAAAGTTT+GGG | 0.404295 | 4_1:+73442876 | Msa0570970:three_prime_UTR |
| AGCAAAGAATTGTCTCTGAT+TGG | 0.406651 | 4_1:+73438570 | Msa0570970:CDS |
| GTTCTGATATTGGTCCGTTT+AGG | 0.425715 | 4_1:+73438516 | Msa0570970:CDS |
| ACAGGGATGCTGAAAATAGA+AGG | 0.467632 | 4_1:-73442830 | None:intergenic |
| AGTGAAAACGCCATGCATAA+TGG | 0.483681 | 4_1:-73442984 | None:intergenic |
| CACCATTTGGTGATATTGCA+GGG | 0.494798 | 4_1:+73441599 | Msa0570970:CDS |
| ATCAAAGTGAATTGAAATGC+CGG | 0.499497 | 4_1:+73438454 | Msa0570970:exon |
| TGCATAATGGTAGCAATCAA+TGG | 0.508344 | 4_1:-73442971 | None:intergenic |
| AATCAAAATCAAATCCAGTA+AGG | 0.527670 | 4_1:+73438264 | Msa0570970:five_prime_UTR |
| GGTCAGTGTAAAGCACCATT+TGG | 0.539107 | 4_1:+73441586 | Msa0570970:CDS |
| GCAGCAGATGAATACCTAAA+CGG | 0.545615 | 4_1:-73438530 | None:intergenic |
| TCTCTAGCAAAATCTAAGGC+TGG | 0.561259 | 4_1:+73441655 | Msa0570970:CDS |
| GGTTGACGATTCATCCAAGA+AGG | 0.562796 | 4_1:+73442708 | Msa0570970:CDS |
| TGTGAAGACAGTTTGTGAGT+TGG | 0.568556 | 4_1:+73442752 | Msa0570970:exon |
| TTGGAAAACAACAAGACTGT+TGG | 0.569386 | 4_1:+73441565 | Msa0570970:CDS |
| AAGGATTTCGATCAAGCAGA+TGG | 0.570386 | 4_1:-73442811 | None:intergenic |
| TTGATTGCTACCATTATGCA+TGG | 0.587552 | 4_1:+73442974 | Msa0570970:three_prime_UTR |
| ATCAAGTTTAGGTTATACGA+TGG | 0.616001 | 4_1:+73438494 | Msa0570970:CDS |
| ACCATTTGGTGATATTGCAG+GGG | 0.625339 | 4_1:+73441600 | Msa0570970:CDS |
| CCATTTGGTGATATTGCAGG+GGG | 0.647774 | 4_1:+73441601 | Msa0570970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAGTAATATAATTAAAA+GGG | - | chr4_1:73438301-73438320 | None:intergenic | 10.0% |
| !! | TAGTAAGTAATATAATTAAA+AGG | - | chr4_1:73438302-73438321 | None:intergenic | 10.0% |
| !!! | TTTATTTACTGTTTTTATTT+TGG | + | chr4_1:73438642-73438661 | Msa0570970:intron | 10.0% |
| !!! | TTTTTTTAAAATATTTTTGG+AGG | - | chr4_1:73439085-73439104 | None:intergenic | 10.0% |
| !! | TGAATAGAATAAAATATTAT+GGG | + | chr4_1:73440083-73440102 | Msa0570970:intron | 10.0% |
| !!! | TACTTTTCATTTTTAAATTA+CGG | - | chr4_1:73442110-73442129 | None:intergenic | 10.0% |
| !! | TATATATTTATAGAAAAGTT+TGG | + | chr4_1:73442875-73442894 | Msa0570970:three_prime_UTR | 10.0% |
| !! | ATATATTTATAGAAAAGTTT+GGG | + | chr4_1:73442876-73442895 | Msa0570970:three_prime_UTR | 10.0% |
| !! | AAGAAAATAAAAACATTGAA+CGG | + | chr4_1:73438176-73438195 | Msa0570970:five_prime_UTR | 15.0% |
| !!! | CATTTTTGATTGAAAATTTT+AGG | + | chr4_1:73438370-73438389 | Msa0570970:intron | 15.0% |
| !!! | TCACTTTTTTTTTTTAGTTT+TGG | + | chr4_1:73438690-73438709 | Msa0570970:intron | 15.0% |
| !! | TTTCATATTTATATATGAAG+TGG | + | chr4_1:73438882-73438901 | Msa0570970:intron | 15.0% |
| !!! | TTTTTATTAGAAGATAATCA+AGG | + | chr4_1:73438963-73438982 | Msa0570970:intron | 15.0% |
| !! | CTGAATAGAATAAAATATTA+TGG | + | chr4_1:73440082-73440101 | Msa0570970:intron | 15.0% |
| !!! | GTTATTTTTATCTTAATTTC+CGG | + | chr4_1:73441067-73441086 | Msa0570970:intron | 15.0% |
| !!! | AAACATATTTTTCATGATTT+AGG | - | chr4_1:73441119-73441138 | None:intergenic | 15.0% |
| !! | TTATATTGAGTGATATATTA+TGG | + | chr4_1:73441300-73441319 | Msa0570970:intron | 15.0% |
| !!! | TCATTTTCTCAAAATATTAT+TGG | - | chr4_1:73442242-73442261 | None:intergenic | 15.0% |
| !! | ATCAAAAGAAAGATAAGATT+AGG | + | chr4_1:73438394-73438413 | Msa0570970:five_prime_UTR | 20.0% |
| !! | TCAAAAGAAAGATAAGATTA+GGG | + | chr4_1:73438395-73438414 | Msa0570970:five_prime_UTR | 20.0% |
| !! | AAAGAAAAAAACAAACCTTT+AGG | - | chr4_1:73438596-73438615 | None:intergenic | 20.0% |
| !!! | TTACTGTTTTTATTTTGGTT+AGG | + | chr4_1:73438647-73438666 | Msa0570970:intron | 20.0% |
| !!! | AGTTTGACTTTAAATTTCAT+CGG | + | chr4_1:73438781-73438800 | Msa0570970:intron | 20.0% |
| !!! | TTGATTTTAGATCTTTATTG+AGG | - | chr4_1:73439161-73439180 | None:intergenic | 20.0% |
| !! | AATCAATTTAATCTTTGTTG+AGG | - | chr4_1:73439210-73439229 | None:intergenic | 20.0% |
| !! | TGAGTAAAAGAAAATTATGA+TGG | - | chr4_1:73439881-73439900 | None:intergenic | 20.0% |
| !!! | TATTTTATTCTATTCAGAGA+AGG | - | chr4_1:73440079-73440098 | None:intergenic | 20.0% |
| !!! | AAGATTTTTGTAACTCAATA+AGG | + | chr4_1:73440566-73440585 | Msa0570970:intron | 20.0% |
| !!! | AGATTTTTGTAACTCAATAA+GGG | + | chr4_1:73440567-73440586 | Msa0570970:intron | 20.0% |
| !! | GATTGTGATATAATTACTAA+AGG | + | chr4_1:73440591-73440610 | Msa0570970:intron | 20.0% |
| !! | ATGTTAAAATTACACAGAAA+AGG | + | chr4_1:73440788-73440807 | Msa0570970:intron | 20.0% |
| !! | ACTTATATTCCATGTATTAT+TGG | - | chr4_1:73441049-73441068 | None:intergenic | 20.0% |
| !! | AAAAATATGTTTAACATGCT+CGG | + | chr4_1:73441127-73441146 | Msa0570970:intron | 20.0% |
| !! | TGATTATTGTTAATTCTAAC+AGG | + | chr4_1:73441332-73441351 | Msa0570970:intron | 20.0% |
| !!! | AGAAAAAAGAATTTTCTACA+GGG | - | chr4_1:73441834-73441853 | None:intergenic | 20.0% |
| !!! | TAGAAAAAAGAATTTTCTAC+AGG | - | chr4_1:73441835-73441854 | None:intergenic | 20.0% |
| !! | TTCAAATCAAAAGATATTGT+AGG | - | chr4_1:73442631-73442650 | None:intergenic | 20.0% |
| !!! | TACAATATCTTTTGATTTGA+AGG | + | chr4_1:73442630-73442649 | Msa0570970:intron | 20.0% |
| !!! | CTTTCCTTTTTTTTCTTCTT+CGG | - | chr4_1:73438159-73438178 | None:intergenic | 25.0% |
| !! | AGTCAAAACAATCTTTGAAA+TGG | + | chr4_1:73438226-73438245 | Msa0570970:five_prime_UTR | 25.0% |
| ! | AATCAAAATCAAATCCAGTA+AGG | + | chr4_1:73438264-73438283 | Msa0570970:five_prime_UTR | 25.0% |
| !! | ATTTGGTTGATATCAAGTTT+AGG | + | chr4_1:73438483-73438502 | Msa0570970:CDS | 25.0% |
| !! | TTAGGTTTGATTGTTGATTA+GGG | + | chr4_1:73438665-73438684 | Msa0570970:intron | 25.0% |
| ! | TTAGAAGATAATCAAGGATT+TGG | + | chr4_1:73438969-73438988 | Msa0570970:intron | 25.0% |
| !!! | TTTCTGTGTTGTTTTTATTG+AGG | + | chr4_1:73439666-73439685 | Msa0570970:intron | 25.0% |
| ! | TTGTAACAGCAGAAAATATA+CGG | - | chr4_1:73439693-73439712 | None:intergenic | 25.0% |
| ! | TAAGGAAAATAGATTGACAT+TGG | - | chr4_1:73440120-73440139 | None:intergenic | 25.0% |
| ! | AAAGCTGTTAATATCAGTAT+TGG | - | chr4_1:73440180-73440199 | None:intergenic | 25.0% |
| ! | AATCTTAAACTCTATTTACC+TGG | - | chr4_1:73440552-73440571 | None:intergenic | 25.0% |
| ! | AATTACTAAAGGAGAAAACT+AGG | + | chr4_1:73440602-73440621 | Msa0570970:intron | 25.0% |
| ! | TTAAAATTACACAGAAAAGG+TGG | + | chr4_1:73440791-73440810 | Msa0570970:intron | 25.0% |
| ! | ATACAAAAACTAAGATGTGT+AGG | + | chr4_1:73440893-73440912 | Msa0570970:intron | 25.0% |
| ! | AGTAGGGTTCTTATTATAAT+AGG | - | chr4_1:73440995-73441014 | None:intergenic | 25.0% |
| ! | GATGTATCGTTAAAATAGTA+GGG | - | chr4_1:73441011-73441030 | None:intergenic | 25.0% |
| ! | AGATGTATCGTTAAAATAGT+AGG | - | chr4_1:73441012-73441031 | None:intergenic | 25.0% |
| ! | TATTCCATGTATTATTGGAA+GGG | - | chr4_1:73441044-73441063 | None:intergenic | 25.0% |
| ! | ATATTCCATGTATTATTGGA+AGG | - | chr4_1:73441045-73441064 | None:intergenic | 25.0% |
| ! | ACTCAGTTCAAACTAAAATT+TGG | + | chr4_1:73441225-73441244 | Msa0570970:intron | 25.0% |
| !! | TTCTCTTTTACAACTTATTG+AGG | + | chr4_1:73441416-73441435 | Msa0570970:intron | 25.0% |
| !!! | GATTAGTTCTGGTAAAATAT+TGG | + | chr4_1:73441546-73441565 | Msa0570970:CDS | 25.0% |
| ! | TGCATTAACAATAGAAACTA+TGG | - | chr4_1:73441687-73441706 | None:intergenic | 25.0% |
| !!! | CATATTACTTTAGAGTGTTT+GGG | - | chr4_1:73442168-73442187 | None:intergenic | 25.0% |
| !!! | CAAACACTCTAAAGTAATAT+GGG | + | chr4_1:73442167-73442186 | Msa0570970:intron | 25.0% |
| !!! | CATTAGAATTGGTTTTATCT+TGG | - | chr4_1:73442442-73442461 | None:intergenic | 25.0% |
| !!! | AAACATGTATGGTTTTAAGT+TGG | - | chr4_1:73442469-73442488 | None:intergenic | 25.0% |
| ! | AACTTAAAACCATACATGTT+TGG | + | chr4_1:73442468-73442487 | Msa0570970:intron | 25.0% |
| ! | ACTTAAAACCATACATGTTT+GGG | + | chr4_1:73442469-73442488 | Msa0570970:intron | 25.0% |
| ! | AGACAATTAAATTACAAGGT+GGG | - | chr4_1:73442504-73442523 | None:intergenic | 25.0% |
| ! | TACCAGACAATTAAATTACA+AGG | - | chr4_1:73442508-73442527 | None:intergenic | 25.0% |
| ! | TAATTTAATTGTCTGGTAGA+GGG | + | chr4_1:73442510-73442529 | Msa0570970:intron | 25.0% |
| ! | GGGTTATATGAACATAATAA+TGG | + | chr4_1:73442530-73442549 | Msa0570970:intron | 25.0% |
| ! | ATGAACATAATAATGGTTGA+AGG | + | chr4_1:73442537-73442556 | Msa0570970:intron | 25.0% |
| !! | TTGTATACGTATTTTACACA+GGG | - | chr4_1:73442850-73442869 | None:intergenic | 25.0% |
| !! | TATAGAAAAGTTTGGGTTAA+TGG | + | chr4_1:73442883-73442902 | Msa0570970:three_prime_UTR | 25.0% |
| !! | TTTTTATTACAACGTCGAAA+AGG | + | chr4_1:73442932-73442951 | Msa0570970:three_prime_UTR | 25.0% |
| TAGCTAGCAAAGCAAAAAAA+AGG | + | chr4_1:73438202-73438221 | Msa0570970:five_prime_UTR | 30.0% | |
| TAAGATTAGGGTTTGAGTAA+AGG | + | chr4_1:73438407-73438426 | Msa0570970:five_prime_UTR | 30.0% | |
| ATCAAAGTGAATTGAAATGC+CGG | + | chr4_1:73438454-73438473 | Msa0570970:exon | 30.0% | |
| ATATCAACCAAATCTTCTTC+CGG | - | chr4_1:73438476-73438495 | None:intergenic | 30.0% | |
| ! | ATCAAGTTTAGGTTATACGA+TGG | + | chr4_1:73438494-73438513 | Msa0570970:CDS | 30.0% |
| !! | TTATACGATGGTTCTGATAT+TGG | + | chr4_1:73438506-73438525 | Msa0570970:CDS | 30.0% |
| ! | GTTAGGTTTGATTGTTGATT+AGG | + | chr4_1:73438664-73438683 | Msa0570970:intron | 30.0% |
| !! | TCTTTGAGATGTTAGTTTAG+TGG | + | chr4_1:73438754-73438773 | Msa0570970:intron | 30.0% |
| ACTTTAAATTTCATCGGCAA+CGG | + | chr4_1:73438787-73438806 | Msa0570970:intron | 30.0% | |
| !! | CTTGCTCTTTTCTTTTAAGT+TGG | + | chr4_1:73438857-73438876 | Msa0570970:intron | 30.0% |
| TCAAAATGAAACTCCTAGTT+TGG | - | chr4_1:73438908-73438927 | None:intergenic | 30.0% | |
| !!! | TAGGAGTTTCATTTTGAGTT+TGG | + | chr4_1:73438911-73438930 | Msa0570970:intron | 30.0% |
| AAAAAACCTGATTCTCTTCT+AGG | - | chr4_1:73439429-73439448 | None:intergenic | 30.0% | |
| !!! | AGAAGAGAATCAGGTTTTTT+TGG | + | chr4_1:73439429-73439448 | Msa0570970:intron | 30.0% |
| !!! | GAAGAGAATCAGGTTTTTTT+GGG | + | chr4_1:73439430-73439449 | Msa0570970:intron | 30.0% |
| !!! | AAGAGAATCAGGTTTTTTTG+GGG | + | chr4_1:73439431-73439450 | Msa0570970:intron | 30.0% |
| TTTAGTAAAATCACTGTGCT+GGG | - | chr4_1:73439524-73439543 | None:intergenic | 30.0% | |
| ! | TTTTAGTAAAATCACTGTGC+TGG | - | chr4_1:73439525-73439544 | None:intergenic | 30.0% |
| ACAACACAGAAACCTAAAAT+GGG | - | chr4_1:73439658-73439677 | None:intergenic | 30.0% | |
| AACAACACAGAAACCTAAAA+TGG | - | chr4_1:73439659-73439678 | None:intergenic | 30.0% | |
| AACTCATACAGAATTCTGAT+TGG | - | chr4_1:73440232-73440251 | None:intergenic | 30.0% | |
| AGGAATGAAAAGTAAAAGTG+TGG | + | chr4_1:73440455-73440474 | Msa0570970:intron | 30.0% | |
| ATTTCATCATCTGTGAGATA+TGG | - | chr4_1:73440831-73440850 | None:intergenic | 30.0% | |
| AAAACTAAGATGTGTAGGTA+TGG | + | chr4_1:73440898-73440917 | Msa0570970:intron | 30.0% | |
| ACACTGTCTAACATCATTAA+CGG | + | chr4_1:73440927-73440946 | Msa0570970:intron | 30.0% | |
| ! | TTTTATGCAAGGAATCGTAA+TGG | - | chr4_1:73440968-73440987 | None:intergenic | 30.0% |
| ATTACGATTCCTTGCATAAA+AGG | + | chr4_1:73440967-73440986 | Msa0570970:intron | 30.0% | |
| ! | TAATAGGAACCTTTTATGCA+AGG | - | chr4_1:73440979-73440998 | None:intergenic | 30.0% |
| ATTCCATGTATTATTGGAAG+GGG | - | chr4_1:73441043-73441062 | None:intergenic | 30.0% | |
| AGTTGTAAAAGAGAACCTAA+AGG | - | chr4_1:73441411-73441430 | None:intergenic | 30.0% | |
| TATTGAGGATTATGTATGCA+CGG | + | chr4_1:73441431-73441450 | Msa0570970:intron | 30.0% | |
| ! | GAAGTGAAATTGATTAGTTC+TGG | + | chr4_1:73441535-73441554 | Msa0570970:CDS | 30.0% |
| TGAAATAGATGAGGTAGAAA+TGG | + | chr4_1:73441750-73441769 | Msa0570970:intron | 30.0% | |
| ! | GCTGAAAAACATAATTTGCA+GGG | + | chr4_1:73441772-73441791 | Msa0570970:intron | 30.0% |
| ! | TATCTTTTTACCTTGCGTAT+AGG | + | chr4_1:73441853-73441872 | Msa0570970:intron | 30.0% |
| !! | CCATATTACTTTAGAGTGTT+TGG | - | chr4_1:73442169-73442188 | None:intergenic | 30.0% |
| !! | CCAAACACTCTAAAGTAATA+TGG | + | chr4_1:73442166-73442185 | Msa0570970:intron | 30.0% |
| AAGTTGGCAATCATTAGAAT+TGG | - | chr4_1:73442453-73442472 | None:intergenic | 30.0% | |
| CTTAAAACCATACATGTTTG+GGG | + | chr4_1:73442470-73442489 | Msa0570970:intron | 30.0% | |
| TTAAAACCATACATGTTTGG+GGG | + | chr4_1:73442471-73442490 | Msa0570970:intron | 30.0% | |
| CAGACAATTAAATTACAAGG+TGG | - | chr4_1:73442505-73442524 | None:intergenic | 30.0% | |
| CACCTTGTAATTTAATTGTC+TGG | + | chr4_1:73442503-73442522 | Msa0570970:intron | 30.0% | |
| GTAATTTAATTGTCTGGTAG+AGG | + | chr4_1:73442509-73442528 | Msa0570970:intron | 30.0% | |
| ATAACATGCTTCATACTTGA+TGG | - | chr4_1:73442583-73442602 | None:intergenic | 30.0% | |
| ! | CTTGTATACGTATTTTACAC+AGG | - | chr4_1:73442851-73442870 | None:intergenic | 30.0% |
| !!! | TTTTTTTCTTCTTCGGTTGG+TGG | - | chr4_1:73438152-73438171 | None:intergenic | 35.0% |
| !!! | CCTTTTTTTTCTTCTTCGGT+TGG | - | chr4_1:73438155-73438174 | None:intergenic | 35.0% |
| CCAACCGAAGAAGAAAAAAA+AGG | + | chr4_1:73438152-73438171 | Msa0570970:five_prime_UTR | 35.0% | |
| AGCAAAGAATTGTCTCTGAT+TGG | + | chr4_1:73438570-73438589 | Msa0570970:CDS | 35.0% | |
| !!! | AGTTTTGGAACTTGTTTGCT+TGG | + | chr4_1:73438705-73438724 | Msa0570970:intron | 35.0% |
| ATATATGAAGTGGCCAAACT+AGG | + | chr4_1:73438892-73438911 | Msa0570970:intron | 35.0% | |
| ! | TTGGAGCTGTTGGATTTTTA+TGG | + | chr4_1:73438988-73439007 | Msa0570970:intron | 35.0% |
| TGGTTGTTTGTGTCAATATG+TGG | + | chr4_1:73439008-73439027 | Msa0570970:intron | 35.0% | |
| !! | TCAATATGTGGTGTTGTTCA+TGG | + | chr4_1:73439020-73439039 | Msa0570970:intron | 35.0% |
| ! | GTGTTTATGGCCTTAATCTT+GGG | - | chr4_1:73439050-73439069 | None:intergenic | 35.0% |
| ! | TGTGTTTATGGCCTTAATCT+TGG | - | chr4_1:73439051-73439070 | None:intergenic | 35.0% |
| GCTTAAGACGATTGTGTTTA+TGG | - | chr4_1:73439063-73439082 | None:intergenic | 35.0% | |
| TTGTGCTAACTCACCAAATT+AGG | + | chr4_1:73439245-73439264 | Msa0570970:intron | 35.0% | |
| !! | ATTCTTTGAGTTGCCCATTT+GGG | - | chr4_1:73439389-73439408 | None:intergenic | 35.0% |
| !! | AATTCTTTGAGTTGCCCATT+TGG | - | chr4_1:73439390-73439409 | None:intergenic | 35.0% |
| ! | AACCTAAAATGGGCTTGATT+TGG | - | chr4_1:73439648-73439667 | None:intergenic | 35.0% |
| GGTATGAATGTGGGTTTATT+TGG | + | chr4_1:73439817-73439836 | Msa0570970:intron | 35.0% | |
| TTTCATTCACACAGACAAAC+AGG | + | chr4_1:73440028-73440047 | Msa0570970:intron | 35.0% | |
| TTTATTAAGAGGGTCCATGA+AGG | + | chr4_1:73440381-73440400 | Msa0570970:intron | 35.0% | |
| TCTCTAGACAATGATCACAA+CGG | + | chr4_1:73440517-73440536 | Msa0570970:intron | 35.0% | |
| TCTAATAACCATGTCCTCAT+TGG | - | chr4_1:73440655-73440674 | None:intergenic | 35.0% | |
| AGAGAGGAATGCAAAACAAA+AGG | + | chr4_1:73440688-73440707 | Msa0570970:intron | 35.0% | |
| CAGAGCAGTATATTCTTTCA+TGG | - | chr4_1:73440763-73440782 | None:intergenic | 35.0% | |
| GAAAGAATATACTGCTCTGT+TGG | + | chr4_1:73440764-73440783 | Msa0570970:intron | 35.0% | |
| ! | AATCATTTTACAGGGTTGAC+CGG | - | chr4_1:73441089-73441108 | None:intergenic | 35.0% |
| TCAACCCTGTAAAATGATTG+AGG | + | chr4_1:73441090-73441109 | Msa0570970:intron | 35.0% | |
| ! | GTGTCCTCAATCATTTTACA+GGG | - | chr4_1:73441097-73441116 | None:intergenic | 35.0% |
| AACATGCTCGGTATAACATT+TGG | + | chr4_1:73441139-73441158 | Msa0570970:intron | 35.0% | |
| ! | ACTCTCTGCAAGGAAAATTT+TGG | + | chr4_1:73441192-73441211 | Msa0570970:intron | 35.0% |
| GTTTGAACTGAGTAAGTGAA+GGG | - | chr4_1:73441218-73441237 | None:intergenic | 35.0% | |
| AGTTTGAACTGAGTAAGTGA+AGG | - | chr4_1:73441219-73441238 | None:intergenic | 35.0% | |
| AATACTCATGTAGCTCCTTT+AGG | + | chr4_1:73441393-73441412 | Msa0570970:intron | 35.0% | |
| ATTGAGGATTATGTATGCAC+GGG | + | chr4_1:73441432-73441451 | Msa0570970:intron | 35.0% | |
| ! | TGTTCTTTTCCCCATAATGT+AGG | + | chr4_1:73441484-73441503 | Msa0570970:intron | 35.0% |
| ! | AACGTTTTGCCTACATTATG+GGG | - | chr4_1:73441496-73441515 | None:intergenic | 35.0% |
| ! | GAACGTTTTGCCTACATTAT+GGG | - | chr4_1:73441497-73441516 | None:intergenic | 35.0% |
| !! | TTCACTTCATTTGCTGACTT+TGG | - | chr4_1:73441523-73441542 | None:intergenic | 35.0% |
| TTGGAAAACAACAAGACTGT+TGG | + | chr4_1:73441565-73441584 | Msa0570970:CDS | 35.0% | |
| GGCTGAATTACATGTTAATG+TGG | - | chr4_1:73441721-73441740 | None:intergenic | 35.0% | |
| TCATCTATTTCATCAAGAGG+TGG | - | chr4_1:73441742-73441761 | None:intergenic | 35.0% | |
| ACCTCTTGATGAAATAGATG+AGG | + | chr4_1:73441741-73441760 | Msa0570970:intron | 35.0% | |
| ACCTCATCTATTTCATCAAG+AGG | - | chr4_1:73441745-73441764 | None:intergenic | 35.0% | |
| ! | GGCTGAAAAACATAATTTGC+AGG | + | chr4_1:73441771-73441790 | Msa0570970:intron | 35.0% |
| ! | AATTTTCTACAGGGAAAAGC+TGG | - | chr4_1:73441825-73441844 | None:intergenic | 35.0% |
| !! | TTACTTTAGAGTGTTTGGGT+AGG | - | chr4_1:73442164-73442183 | None:intergenic | 35.0% |
| CTTTGTAACACCGACATTTA+TGG | - | chr4_1:73442335-73442354 | None:intergenic | 35.0% | |
| ! | ATAACTTCTCAAAGGCATGT+CGG | - | chr4_1:73442365-73442384 | None:intergenic | 35.0% |
| !!! | GAATTGGTTTTATCTTGGAC+AGG | - | chr4_1:73442437-73442456 | None:intergenic | 35.0% |
| ! | CTTTTACTCAACAGAGAAGA+AGG | + | chr4_1:73442687-73442706 | Msa0570970:intron | 35.0% |
| TGCATAATGGTAGCAATCAA+TGG | - | chr4_1:73442974-73442993 | None:intergenic | 35.0% | |
| TTGATTGCTACCATTATGCA+TGG | + | chr4_1:73442974-73442993 | Msa0570970:three_prime_UTR | 35.0% | |
| GGGATCGAATATTACCTTAC+TGG | - | chr4_1:73438281-73438300 | None:intergenic | 40.0% | |
| TGAAATGCCGGAAGAAGATT+TGG | + | chr4_1:73438466-73438485 | Msa0570970:exon | 40.0% | |
| GTTCTGATATTGGTCCGTTT+AGG | + | chr4_1:73438516-73438535 | Msa0570970:CDS | 40.0% | |
| GCAGCAGATGAATACCTAAA+CGG | - | chr4_1:73438533-73438552 | None:intergenic | 40.0% | |
| !! | ATTGTCTCTGATTGGCCTAA+AGG | + | chr4_1:73438578-73438597 | Msa0570970:CDS | 40.0% |
| TTAAATTTCATCGGCAACGG+CGG | + | chr4_1:73438790-73438809 | Msa0570970:intron | 40.0% | |
| ! | AATCAAGGATTTGGAGCTGT+TGG | + | chr4_1:73438978-73438997 | Msa0570970:intron | 40.0% |
| !!! | ACATCTGGTTTTTCCAGAGT+TGG | + | chr4_1:73439356-73439375 | Msa0570970:intron | 40.0% |
| GCAACTCAAAGAATTGAACC+CGG | + | chr4_1:73439395-73439414 | Msa0570970:intron | 40.0% | |
| CAACTCAAAGAATTGAACCC+GGG | + | chr4_1:73439396-73439415 | Msa0570970:intron | 40.0% | |
| TCTTCTCCTAGAAGAGAATC+AGG | + | chr4_1:73439420-73439439 | Msa0570970:intron | 40.0% | |
| ATTCTTTGAGTCGCCCATTT+GGG | - | chr4_1:73439468-73439487 | None:intergenic | 40.0% | |
| ! | AGCCAAATCAAGCCCATTTT+AGG | + | chr4_1:73439643-73439662 | Msa0570970:intron | 40.0% |
| ! | TCTCGTCTGTGTTAGTTTCA+TGG | + | chr4_1:73439790-73439809 | Msa0570970:intron | 40.0% |
| ! | CTCGTCTGTGTTAGTTTCAT+GGG | + | chr4_1:73439791-73439810 | Msa0570970:intron | 40.0% |
| ! | TCTGTGTTAGTTTCATGGGT+AGG | + | chr4_1:73439795-73439814 | Msa0570970:intron | 40.0% |
| ! | CTGTGTTAGTTTCATGGGTA+GGG | + | chr4_1:73439796-73439815 | Msa0570970:intron | 40.0% |
| GAAGACTGAATAATGACGAG+AGG | + | chr4_1:73439844-73439863 | Msa0570970:intron | 40.0% | |
| TGAATAATGACGAGAGGACA+CGG | + | chr4_1:73439850-73439869 | Msa0570970:intron | 40.0% | |
| TTCCTTATCAACAGCCGTTA+CGG | + | chr4_1:73440133-73440152 | Msa0570970:intron | 40.0% | |
| ACTAACTTCGATGTCCGTAA+CGG | - | chr4_1:73440150-73440169 | None:intergenic | 40.0% | |
| !! | GAGGCATCGGTTTATTAAGA+GGG | + | chr4_1:73440371-73440390 | Msa0570970:intron | 40.0% |
| !! | GATCTAGTTCTTCACCTTCA+TGG | - | chr4_1:73440398-73440417 | None:intergenic | 40.0% |
| AGAACTAGATCTAGCATCAG+TGG | + | chr4_1:73440407-73440426 | Msa0570970:intron | 40.0% | |
| GAACTAGATCTAGCATCAGT+GGG | + | chr4_1:73440408-73440427 | Msa0570970:intron | 40.0% | |
| GTGTGGTAGTTGTAGTTAGT+TGG | + | chr4_1:73440472-73440491 | Msa0570970:intron | 40.0% | |
| TCTAGAGACTATGTCCTTGT+TGG | - | chr4_1:73440505-73440524 | None:intergenic | 40.0% | |
| AGACAATGATCACAACGGAT+AGG | + | chr4_1:73440522-73440541 | Msa0570970:intron | 40.0% | |
| AATGATCACAACGGATAGGA+AGG | + | chr4_1:73440526-73440545 | Msa0570970:intron | 40.0% | |
| AAAGGAGAAAACTAGGAGTG+TGG | + | chr4_1:73440609-73440628 | Msa0570970:intron | 40.0% | |
| TGGTAGTTGTAGATTCTGCT+CGG | + | chr4_1:73440629-73440648 | Msa0570970:intron | 40.0% | |
| AGACAACTGTCAGATTAGAG+AGG | + | chr4_1:73440672-73440691 | Msa0570970:intron | 40.0% | |
| GCAAGGAATCGTAATGGTTT+AGG | - | chr4_1:73440962-73440981 | None:intergenic | 40.0% | |
| TGACCCCTTCCAATAATACA+TGG | + | chr4_1:73441037-73441056 | Msa0570970:intron | 40.0% | |
| ! | GGTGTCCTCAATCATTTTAC+AGG | - | chr4_1:73441098-73441117 | None:intergenic | 40.0% |
| ! | GGAACGTTTTGCCTACATTA+TGG | - | chr4_1:73441498-73441517 | None:intergenic | 40.0% |
| ! | CACCATTTGGTGATATTGCA+GGG | + | chr4_1:73441599-73441618 | Msa0570970:CDS | 40.0% |
| ! | ACCATTTGGTGATATTGCAG+GGG | + | chr4_1:73441600-73441619 | Msa0570970:CDS | 40.0% |
| GCCATCTCTAGCAAAATCTA+AGG | + | chr4_1:73441651-73441670 | Msa0570970:CDS | 40.0% | |
| ! | GCCTTAGATTTTGCTAGAGA+TGG | - | chr4_1:73441655-73441674 | None:intergenic | 40.0% |
| ! | TCTCTAGCAAAATCTAAGGC+TGG | + | chr4_1:73441655-73441674 | Msa0570970:CDS | 40.0% |
| GTAACAAAGTCCTATACGCA+AGG | - | chr4_1:73441866-73441885 | None:intergenic | 40.0% | |
| TAGAAGTCGTTGAAAGCCTA+AGG | + | chr4_1:73441914-73441933 | Msa0570970:intron | 40.0% | |
| TTGAAAGCCTAAGGTGTGTT+TGG | + | chr4_1:73441923-73441942 | Msa0570970:intron | 40.0% | |
| CTAAGGTGTGTTTGGATTGA+GGG | + | chr4_1:73441931-73441950 | Msa0570970:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr4_1:73441937-73441956 | Msa0570970:intron | 40.0% | |
| ATTGAGGGTTTAGGAGAAGA+AGG | + | chr4_1:73441946-73441965 | Msa0570970:intron | 40.0% | |
| TTGAGGGTTTAGGAGAAGAA+GGG | + | chr4_1:73441947-73441966 | Msa0570970:intron | 40.0% | |
| ! | TTTAGAGTGTTTGGGTAGGA+GGG | - | chr4_1:73442160-73442179 | None:intergenic | 40.0% |
| AACCTATGAAGCACAAACAC+TGG | + | chr4_1:73442196-73442215 | Msa0570970:intron | 40.0% | |
| ACACCTTGGACCATAAATGT+CGG | + | chr4_1:73442322-73442341 | Msa0570970:intron | 40.0% | |
| GTTTAGTAGATGAGATGCCT+CGG | - | chr4_1:73442388-73442407 | None:intergenic | 40.0% | |
| !!! | TGGTTTTATCTTGGACAGGT+GGG | - | chr4_1:73442433-73442452 | None:intergenic | 40.0% |
| !!! | TTGGTTTTATCTTGGACAGG+TGG | - | chr4_1:73442434-73442453 | None:intergenic | 40.0% |
| TAATGGTTGAAGGAGATACC+TGG | + | chr4_1:73442547-73442566 | Msa0570970:intron | 40.0% | |
| AATGGTTGAAGGAGATACCT+GGG | + | chr4_1:73442548-73442567 | Msa0570970:intron | 40.0% | |
| ACAAGAACAGACAACCTTCT+TGG | - | chr4_1:73442725-73442744 | None:intergenic | 40.0% | |
| TGTGAAGACAGTTTGTGAGT+TGG | + | chr4_1:73442752-73442771 | Msa0570970:exon | 40.0% | |
| ! | ATCAAGCAGATGGTTTTCTG+TGG | - | chr4_1:73442804-73442823 | None:intergenic | 40.0% |
| AAGGATTTCGATCAAGCAGA+TGG | - | chr4_1:73442814-73442833 | None:intergenic | 40.0% | |
| ACAGGGATGCTGAAAATAGA+AGG | - | chr4_1:73442833-73442852 | None:intergenic | 40.0% | |
| AGTGAAAACGCCATGCATAA+TGG | - | chr4_1:73442987-73443006 | None:intergenic | 40.0% | |
| !! | TATGTGGTGTTGTTCATGGC+TGG | + | chr4_1:73439024-73439043 | Msa0570970:intron | 45.0% |
| CGGGGTCAAAGATCCTAATT+TGG | - | chr4_1:73439261-73439280 | None:intergenic | 45.0% | |
| !! | ACTTGAGGATTGGTCCCATA+GGG | - | chr4_1:73439326-73439345 | None:intergenic | 45.0% |
| ACCAATCCTCAAGTCGACAA+CGG | + | chr4_1:73439332-73439351 | Msa0570970:intron | 45.0% | |
| AGTTGGACTACCTCCCAAAT+GGG | + | chr4_1:73439373-73439392 | Msa0570970:intron | 45.0% | |
| ! | TCTCTTCTAGGAGAAGAACC+CGG | - | chr4_1:73439417-73439436 | None:intergenic | 45.0% |
| !!! | GAATCAGGTTTTTTTGGGGC+TGG | + | chr4_1:73439435-73439454 | Msa0570970:intron | 45.0% |
| GATTCTTTGAGTCGCCCATT+TGG | - | chr4_1:73439469-73439488 | None:intergenic | 45.0% | |
| CGACTCAAAGAATCGAACCT+GGG | + | chr4_1:73439475-73439494 | Msa0570970:intron | 45.0% | |
| ! | CTCTTCTAGGAAAAGAACCC+AGG | - | chr4_1:73439495-73439514 | None:intergenic | 45.0% |
| !! | GGGCTTGATTTGGCTTACAT+TGG | - | chr4_1:73439638-73439657 | None:intergenic | 45.0% |
| TCATGGGTAGGGTATGAATG+TGG | + | chr4_1:73439807-73439826 | Msa0570970:intron | 45.0% | |
| CATGGGTAGGGTATGAATGT+GGG | + | chr4_1:73439808-73439827 | Msa0570970:intron | 45.0% | |
| GAATAATGACGAGAGGACAC+GGG | + | chr4_1:73439851-73439870 | Msa0570970:intron | 45.0% | |
| ACAAACAGGCGTATAGCTCT+TGG | + | chr4_1:73440042-73440061 | Msa0570970:intron | 45.0% | |
| GAGATCATGAGACTAGGAGA+GGG | - | chr4_1:73440283-73440302 | None:intergenic | 45.0% | |
| GGAATGGAGATCATGAGACT+AGG | - | chr4_1:73440289-73440308 | None:intergenic | 45.0% | |
| TTGGCACCACTTGATTCAAG+TGG | + | chr4_1:73440349-73440368 | Msa0570970:intron | 45.0% | |
| ATGCCTCCACTTGAATCAAG+TGG | - | chr4_1:73440358-73440377 | None:intergenic | 45.0% | |
| ! | CTTGATTCAAGTGGAGGCAT+CGG | + | chr4_1:73440358-73440377 | Msa0570970:intron | 45.0% |
| !! | GGAGGCATCGGTTTATTAAG+AGG | + | chr4_1:73440370-73440389 | Msa0570970:intron | 45.0% |
| ATCTAGCATCAGTGGGAAAG+AGG | + | chr4_1:73440415-73440434 | Msa0570970:intron | 45.0% | |
| AGTGGGAAAGAGGAAAAGCA+TGG | + | chr4_1:73440425-73440444 | Msa0570970:intron | 45.0% | |
| ! | AGGAAAAGCATGGCAGAAGT+AGG | + | chr4_1:73440435-73440454 | Msa0570970:intron | 45.0% |
| ACAGAAAAGGTGGAAACGAG+AGG | + | chr4_1:73440801-73440820 | Msa0570970:intron | 45.0% | |
| TTGTCGTCAAACTCTCTGCA+AGG | + | chr4_1:73441182-73441201 | Msa0570970:intron | 45.0% | |
| !! | CTTCATTTGCTGACTTTGGC+AGG | - | chr4_1:73441519-73441538 | None:intergenic | 45.0% |
| ! | GGTCAGTGTAAAGCACCATT+TGG | + | chr4_1:73441586-73441605 | Msa0570970:CDS | 45.0% |
| ! | GCACCATTTGGTGATATTGC+AGG | + | chr4_1:73441598-73441617 | Msa0570970:CDS | 45.0% |
| ! | CCATTTGGTGATATTGCAGG+GGG | + | chr4_1:73441601-73441620 | Msa0570970:CDS | 45.0% |
| CCTCAATCCAAACACACCTT+AGG | - | chr4_1:73441933-73441952 | None:intergenic | 45.0% | |
| CCTAAGGTGTGTTTGGATTG+AGG | + | chr4_1:73441930-73441949 | Msa0570970:intron | 45.0% | |
| !! | CTTTAGAGTGTTTGGGTAGG+AGG | - | chr4_1:73442161-73442180 | None:intergenic | 45.0% |
| GTCCAGTGTTTGTGCTTCAT+AGG | - | chr4_1:73442201-73442220 | None:intergenic | 45.0% | |
| GTAATCACATGCCTCGTTGT+CGG | + | chr4_1:73442273-73442292 | Msa0570970:intron | 45.0% | |
| TTTATGGTCCAAGGTGTGTC+TGG | - | chr4_1:73442319-73442338 | None:intergenic | 45.0% | |
| ACACCGACATTTATGGTCCA+AGG | - | chr4_1:73442328-73442347 | None:intergenic | 45.0% | |
| ! | TGCCTTTGAGAAGTTATCCG+AGG | + | chr4_1:73442368-73442387 | Msa0570970:intron | 45.0% |
| TGCCTCGGATAACTTCTCAA+AGG | - | chr4_1:73442373-73442392 | None:intergenic | 45.0% | |
| CAACTTCCCCCAAACATGTA+TGG | - | chr4_1:73442480-73442499 | None:intergenic | 45.0% | |
| GGTTGACGATTCATCCAAGA+AGG | + | chr4_1:73442708-73442727 | Msa0570970:CDS | 45.0% | |
| !!! | ATGTTTTTTTAAAATATTTT+TGG | - | chr4_1:73439088-73439107 | None:intergenic | 5.0% |
| ! | TCATGGCTGGCCCAAGATTA+AGG | + | chr4_1:73439037-73439056 | Msa0570970:intron | 50.0% |
| TAGGATCTTTGACCCCGAGT+AGG | + | chr4_1:73439264-73439283 | Msa0570970:intron | 50.0% | |
| TAAGCCGTCAGGATACCTTG+AGG | - | chr4_1:73439292-73439311 | None:intergenic | 50.0% | |
| !! | GACTTGAGGATTGGTCCCAT+AGG | - | chr4_1:73439327-73439346 | None:intergenic | 50.0% |
| CCAATCCTCAAGTCGACAAC+GGG | + | chr4_1:73439333-73439352 | Msa0570970:intron | 50.0% | |
| TTTGGGAGGTAGTCCAACTC+TGG | - | chr4_1:73439372-73439391 | None:intergenic | 50.0% | |
| GAGTTGGACTACCTCCCAAA+TGG | + | chr4_1:73439372-73439391 | Msa0570970:intron | 50.0% | |
| !! | CTTTGAGTTGCCCATTTGGG+AGG | - | chr4_1:73439386-73439405 | None:intergenic | 50.0% |
| ! | CTCTTCTAGGAGAAGAACCC+GGG | - | chr4_1:73439416-73439435 | None:intergenic | 50.0% |
| GCGACTCAAAGAATCGAACC+TGG | + | chr4_1:73439474-73439493 | Msa0570970:intron | 50.0% | |
| TGCTGGGATGACTCTCTTCT+AGG | - | chr4_1:73439508-73439527 | None:intergenic | 50.0% | |
| GTCCGTAACGGCTGTTGATA+AGG | - | chr4_1:73440138-73440157 | None:intergenic | 50.0% | |
| GGAGATCATGAGACTAGGAG+AGG | - | chr4_1:73440284-73440303 | None:intergenic | 50.0% | |
| CCAGAATTGGACAGCTGGAA+TGG | - | chr4_1:73440305-73440324 | None:intergenic | 50.0% | |
| CCATTCCAGCTGTCCAATTC+TGG | + | chr4_1:73440302-73440321 | Msa0570970:intron | 50.0% | |
| ATCAGTCACAGACACAGGGA+CGG | - | chr4_1:73440330-73440349 | None:intergenic | 50.0% | |
| TCCCTGTGTCTGTGACTGAT+TGG | + | chr4_1:73440330-73440349 | Msa0570970:intron | 50.0% | |
| GCCAATCAGTCACAGACACA+GGG | - | chr4_1:73440334-73440353 | None:intergenic | 50.0% | |
| TGCCAATCAGTCACAGACAC+AGG | - | chr4_1:73440335-73440354 | None:intergenic | 50.0% | |
| GCACCACTTGATTCAAGTGG+AGG | + | chr4_1:73440352-73440371 | Msa0570970:intron | 50.0% | |
| ! | TAGTTGGTGCTCAGCCAACA+AGG | + | chr4_1:73440488-73440507 | Msa0570970:intron | 50.0% |
| TAGATTCTGCTCGGCCAATG+AGG | + | chr4_1:73440638-73440657 | Msa0570970:intron | 50.0% | |
| CCCCCTGCAATATCACCAAA+TGG | - | chr4_1:73441604-73441623 | None:intergenic | 50.0% | |
| AGGGTTTAGGAGAAGAAGGG+AGG | + | chr4_1:73441950-73441969 | Msa0570970:intron | 50.0% | |
| GGGTTTAGGAGAAGAAGGGA+GGG | + | chr4_1:73441951-73441970 | Msa0570970:intron | 50.0% | |
| GGTTTAGGAGAAGAAGGGAG+GGG | + | chr4_1:73441952-73441971 | Msa0570970:intron | 50.0% | |
| TTGGGTAGGAGGGTTTAGGA+GGG | - | chr4_1:73442150-73442169 | None:intergenic | 50.0% | |
| TTTGGGTAGGAGGGTTTAGG+AGG | - | chr4_1:73442151-73442170 | None:intergenic | 50.0% | |
| GTGTTTGGGTAGGAGGGTTT+AGG | - | chr4_1:73442154-73442173 | None:intergenic | 50.0% | |
| CGTGTTAGTATCCGACAACG+AGG | - | chr4_1:73442287-73442306 | None:intergenic | 50.0% | |
| GTTAGACACCAGACACACCT+TGG | + | chr4_1:73442308-73442327 | Msa0570970:intron | 50.0% | |
| !! | CTTGATGGTGACTCTAACCC+AGG | - | chr4_1:73442568-73442587 | None:intergenic | 50.0% |
| ! | ATACCTTGAGGCGCCTACTC+GGG | - | chr4_1:73439280-73439299 | None:intergenic | 55.0% |
| ! | GATACCTTGAGGCGCCTACT+CGG | - | chr4_1:73439281-73439300 | None:intergenic | 55.0% |
| TTAGCCCCTTTGGGCCCTAT+GGG | + | chr4_1:73439309-73439328 | Msa0570970:intron | 55.0% | |
| TTGGTCCCATAGGGCCCAAA+GGG | - | chr4_1:73439317-73439336 | None:intergenic | 55.0% | |
| ATTGGTCCCATAGGGCCCAA+AGG | - | chr4_1:73439318-73439337 | None:intergenic | 55.0% | |
| !! | CCCGTTGTCGACTTGAGGAT+TGG | - | chr4_1:73439336-73439355 | None:intergenic | 55.0% |
| !! | GATGTCCCGTTGTCGACTTG+AGG | - | chr4_1:73439341-73439360 | None:intergenic | 55.0% |
| CAAGTCGACAACGGGACATC+TGG | + | chr4_1:73439341-73439360 | Msa0570970:intron | 55.0% | |
| GGCTGGACTACCTCCCAAAT+GGG | + | chr4_1:73439452-73439471 | Msa0570970:intron | 55.0% | |
| CTTTGAGTCGCCCATTTGGG+AGG | - | chr4_1:73439465-73439484 | None:intergenic | 55.0% | |
| TCACAACGGATAGGAAGGCC+AGG | + | chr4_1:73440531-73440550 | Msa0570970:intron | 55.0% | |
| TTAGGAGAAGAAGGGAGGGG+AGG | + | chr4_1:73441955-73441974 | Msa0570970:intron | 55.0% | |
| TAGGAGAAGAAGGGAGGGGA+GGG | + | chr4_1:73441956-73441975 | Msa0570970:intron | 55.0% | |
| AGGAGGGTTTAGGAGGGGAA+GGG | - | chr4_1:73442144-73442163 | None:intergenic | 55.0% | |
| TAGGAGGGTTTAGGAGGGGA+AGG | - | chr4_1:73442145-73442164 | None:intergenic | 55.0% | |
| TGGGTAGGAGGGTTTAGGAG+GGG | - | chr4_1:73442149-73442168 | None:intergenic | 55.0% | |
| ! | TACCTTGAGGCGCCTACTCG+GGG | - | chr4_1:73439279-73439298 | None:intergenic | 60.0% |
| ! | GGCGCCTCAAGGTATCCTGA+CGG | + | chr4_1:73439285-73439304 | Msa0570970:intron | 60.0% |
| TCCTGACGGCTTAGCCCCTT+TGG | + | chr4_1:73439299-73439318 | Msa0570970:intron | 60.0% | |
| CCTGACGGCTTAGCCCCTTT+GGG | + | chr4_1:73439300-73439319 | Msa0570970:intron | 60.0% | |
| CTTAGCCCCTTTGGGCCCTA+TGG | + | chr4_1:73439308-73439327 | Msa0570970:intron | 60.0% | |
| TGGTCCCATAGGGCCCAAAG+GGG | - | chr4_1:73439316-73439335 | None:intergenic | 60.0% | |
| GGGCTGGACTACCTCCCAAA+TGG | + | chr4_1:73439451-73439470 | Msa0570970:intron | 60.0% | |
| CGGAGCCAGAATTGGACAGC+TGG | - | chr4_1:73440310-73440329 | None:intergenic | 60.0% | |
| CACAGGGACGGAGCCAGAAT+TGG | - | chr4_1:73440318-73440337 | None:intergenic | 60.0% | |
| CTGCTCGGCCAATGAGGACA+TGG | + | chr4_1:73440644-73440663 | Msa0570970:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr4_1:73442139-73442158 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr4_1:73442140-73442159 | None:intergenic | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr4_1:73442141-73442160 | None:intergenic | 60.0% | |
| CCCAAAGGGGCTAAGCCGTC+AGG | - | chr4_1:73439303-73439322 | None:intergenic | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | - | chr4_1:73442135-73442154 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr4_1:73442136-73442155 | None:intergenic | 65.0% | |
| GACCCCGAGTAGGCGCCTCA+AGG | + | chr4_1:73439274-73439293 | Msa0570970:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 73438132 | 73443017 | 73438132 | ID=Msa0570970;Name=Msa0570970 |
| chr4_1 | mRNA | 73438132 | 73443017 | 73438132 | ID=Msa0570970-mRNA-1;Parent=Msa0570970;Name=Msa0570970-mRNA-1;_AED=0.17;_eAED=0.17;_QI=232|1|1|1|0.66|0.5|4|261|118 |
| chr4_1 | exon | 73438132 | 73438285 | 73438132 | ID=Msa0570970-mRNA-1:exon:25183;Parent=Msa0570970-mRNA-1 |
| chr4_1 | exon | 73438392 | 73438599 | 73438392 | ID=Msa0570970-mRNA-1:exon:25184;Parent=Msa0570970-mRNA-1 |
| chr4_1 | exon | 73441506 | 73441676 | 73441506 | ID=Msa0570970-mRNA-1:exon:25185;Parent=Msa0570970-mRNA-1 |
| chr4_1 | exon | 73442701 | 73443017 | 73442701 | ID=Msa0570970-mRNA-1:exon:25186;Parent=Msa0570970-mRNA-1 |
| chr4_1 | five_prime_UTR | 73438132 | 73438285 | 73438132 | ID=Msa0570970-mRNA-1:five_prime_utr;Parent=Msa0570970-mRNA-1 |
| chr4_1 | five_prime_UTR | 73438392 | 73438469 | 73438392 | ID=Msa0570970-mRNA-1:five_prime_utr;Parent=Msa0570970-mRNA-1 |
| chr4_1 | CDS | 73438470 | 73438599 | 73438470 | ID=Msa0570970-mRNA-1:cds;Parent=Msa0570970-mRNA-1 |
| chr4_1 | CDS | 73441506 | 73441676 | 73441506 | ID=Msa0570970-mRNA-1:cds;Parent=Msa0570970-mRNA-1 |
| chr4_1 | CDS | 73442701 | 73442756 | 73442701 | ID=Msa0570970-mRNA-1:cds;Parent=Msa0570970-mRNA-1 |
| chr4_1 | three_prime_UTR | 73442757 | 73443017 | 73442757 | ID=Msa0570970-mRNA-1:three_prime_utr;Parent=Msa0570970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
