AlfalfaGEDB | Msa0570970

M. sativa cultivar zhongmu-4 / Msa0570970

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF13881.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570970	XP_013446960.1	100.000	118	0	0	1	118	1	118	8.83e-80	240

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570970	sp\|Q9SW27\|MUB3_ARATH	81.356	118	22	0	1	118	1	118	7.33e-70	207

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570970	I3SRV2	100.000	118	0	0	1	118	1	118	4.22e-80	240

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0570970	0.817971	2.500517e-52	-8.615850e-47
Msa0043980	Msa0570970	0.811715	6.094689e-51	-8.615850e-47
Msa0068740	Msa0570970	-0.806937	6.454866e-50	-8.615850e-47
Msa0109900	Msa0570970	0.823279	1.508564e-53	-8.615850e-47
Msa0117770	Msa0570970	0.814593	1.423679e-51	-8.615850e-47
Msa0151180	Msa0570970	0.828304	9.682799e-55	-8.615850e-47
Msa0187950	Msa0570970	0.800235	1.585086e-48	-8.615850e-47
Msa0201070	Msa0570970	0.819491	1.129608e-52	-8.615850e-47
Msa0329350	Msa0570970	0.810911	9.108583e-51	-8.615850e-47
Msa0426900	Msa0570970	0.802026	6.819747e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570970	MtrunA17_Chr8g0386041	100.000	118	0	0	1	118	1	118	8.12e-84	240
Msa0570970	MtrunA17_Chr7g0224251	64.407	118	42	0	1	118	1	118	3.02e-57	173
Msa0570970	MtrunA17_Chr7g0224241	62.037	108	41	0	1	108	1	108	2.70e-48	157
Msa0570970	MtrunA17_Chr7g0268701	47.009	117	59	3	4	118	5	120	1.22e-34	115
Msa0570970	MtrunA17_Chr6g0454091	48.718	117	56	2	3	118	4	117	1.50e-33	113
Msa0570970	MtrunA17_Chr7g0218501	45.299	117	60	2	4	118	5	119	2.61e-31	107
Msa0570970	MtrunA17_Chr8g0386061	72.917	48	13	0	1	48	1	48	1.17e-20	79.0
Msa0570970	MtrunA17_Chr8g0386071	73.770	61	14	1	44	102	14	74	3.07e-20	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0570970	AT4G24990.2	81.356	118	22	0	1	118	1	118	7.45e-71	207
Msa0570970	AT4G24990.1	81.356	118	22	0	1	118	1	118	7.45e-71	207
Msa0570970	AT3G26980.1	63.333	120	42	1	1	118	1	120	1.75e-53	164
Msa0570970	AT1G77870.1	49.167	120	59	1	1	118	1	120	7.55e-36	119
Msa0570970	AT1G22050.1	46.154	117	61	2	3	118	4	119	4.55e-35	117
Msa0570970	AT5G15460.2	47.826	115	57	1	4	115	5	119	1.30e-31	108
Msa0570970	AT5G15460.1	47.826	115	57	1	4	115	5	119	1.30e-31	108
Msa0570970	AT5G15460.4	47.826	115	57	1	4	115	5	119	1.30e-31	108
Msa0570970	AT3G01050.2	45.217	115	61	1	4	118	5	117	1.42e-31	108
Msa0570970	AT3G01050.3	45.217	115	61	1	4	118	5	117	1.42e-31	108

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Find 39 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGATTTCGATCAAGCAGA+TGG	0.570386	4_1:-73442811	None:intergenic
AATCAAAATCAAATCCAGTA+AGG	0.527670	4_1:+73438264	Msa0570970:five_prime_UTR
ACAAGAACAGACAACCTTCT+TGG	0.322618	4_1:-73442722	None:intergenic
ACAGGGATGCTGAAAATAGA+AGG	0.467632	4_1:-73442830	None:intergenic
ACCATTTGGTGATATTGCAG+GGG	0.625339	4_1:+73441600	Msa0570970:CDS
AGCAAAGAATTGTCTCTGAT+TGG	0.406651	4_1:+73438570	Msa0570970:CDS
AGTCAAAACAATCTTTGAAA+TGG	0.377568	4_1:+73438226	Msa0570970:five_prime_UTR
AGTGAAAACGCCATGCATAA+TGG	0.483681	4_1:-73442984	None:intergenic
ATATATTTATAGAAAAGTTT+GGG	0.404295	4_1:+73442876	Msa0570970:three_prime_UTR
ATATCAACCAAATCTTCTTC+CGG	0.380506	4_1:-73438473	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGCTAGCAAAGCAAAAAAA+AGG	+	chr4_1:73438202-73438221	Msa0570970:five_prime_UTR	30.0%
TAAGATTAGGGTTTGAGTAA+AGG	+	chr4_1:73438407-73438426	Msa0570970:five_prime_UTR	30.0%
ATCAAAGTGAATTGAAATGC+CGG	+	chr4_1:73438454-73438473	Msa0570970:exon	30.0%
ATATCAACCAAATCTTCTTC+CGG	-	chr4_1:73438476-73438495	None:intergenic	30.0%
ACTTTAAATTTCATCGGCAA+CGG	+	chr4_1:73438787-73438806	Msa0570970:intron	30.0%
TCAAAATGAAACTCCTAGTT+TGG	-	chr4_1:73438908-73438927	None:intergenic	30.0%
AAAAAACCTGATTCTCTTCT+AGG	-	chr4_1:73439429-73439448	None:intergenic	30.0%
TTTAGTAAAATCACTGTGCT+GGG	-	chr4_1:73439524-73439543	None:intergenic	30.0%
ACAACACAGAAACCTAAAAT+GGG	-	chr4_1:73439658-73439677	None:intergenic	30.0%
AACAACACAGAAACCTAAAA+TGG	-	chr4_1:73439659-73439678	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	73438132	73443017	73438132	ID=Msa0570970;Name=Msa0570970
chr4_1	mRNA	73438132	73443017	73438132	ID=Msa0570970-mRNA-1;Parent=Msa0570970;Name=Msa0570970-mRNA-1;_AED=0.17;_eAED=0.17;_QI=232\|1\|1\|1\|0.66\|0.5\|4\|261\|118
chr4_1	exon	73438132	73438285	73438132	ID=Msa0570970-mRNA-1:exon:25183;Parent=Msa0570970-mRNA-1
chr4_1	exon	73438392	73438599	73438392	ID=Msa0570970-mRNA-1:exon:25184;Parent=Msa0570970-mRNA-1
chr4_1	exon	73441506	73441676	73441506	ID=Msa0570970-mRNA-1:exon:25185;Parent=Msa0570970-mRNA-1
chr4_1	exon	73442701	73443017	73442701	ID=Msa0570970-mRNA-1:exon:25186;Parent=Msa0570970-mRNA-1
chr4_1	five_prime_UTR	73438132	73438285	73438132	ID=Msa0570970-mRNA-1:five_prime_utr;Parent=Msa0570970-mRNA-1
chr4_1	five_prime_UTR	73438392	73438469	73438392	ID=Msa0570970-mRNA-1:five_prime_utr;Parent=Msa0570970-mRNA-1
chr4_1	CDS	73438470	73438599	73438470	ID=Msa0570970-mRNA-1:cds;Parent=Msa0570970-mRNA-1
chr4_1	CDS	73441506	73441676	73441506	ID=Msa0570970-mRNA-1:cds;Parent=Msa0570970-mRNA-1
chr4_1	CDS	73442701	73442756	73442701	ID=Msa0570970-mRNA-1:cds;Parent=Msa0570970-mRNA-1
chr4_1	three_prime_UTR	73442757	73443017	73442757	ID=Msa0570970-mRNA-1:three_prime_utr;Parent=Msa0570970-mRNA-1

Gene Sequence	>Msa0570970 ATGCCGGAAGAAGATTTGGTTGATATCAAGTTTAGGTTATACGATGGTTCTGATATTGGTCCGTTTAGGTATTCATCTGCTGCTACTGTTGATATGCTTAAGCAAAGAATTGTCTCTGATTGGCCTAAAGGCAAAACGTTCCTGCCAAAGTCAGCAAATGAAGTGAAATTGATTAGTTCTGGTAAAATATTGGAAAACAACAAGACTGTTGGTCAGTGTAAAGCACCATTTGGTGATATTGCAGGGGGAGTTATAATCATGCATGTTGTTGTACAGCCATCTCTAGCAAAATCTAAGGCTGAGAAGAAGGTTGACGATTCATCCAAGAAGGTTGTCTGTTCTTGTTCTATAATGTGA
Protein sequence	>Msa0570970 MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTFLPKSANEVKLISSGKILENNKTVGQCKAPFGDIAGGVIIMHVVVQPSLAKSKAEKKVDDSSKKVVCSCSIM*