Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572510 | XP_013447173.1 | 96.436 | 477 | 14 | 2 | 1 | 475 | 1 | 476 | 0.0 | 903 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572510 | sp|Q9T012|HMG13_ARATH | 58.261 | 460 | 159 | 7 | 10 | 464 | 11 | 442 | 1.34e-163 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572510 | A0A072U5S8 | 96.436 | 477 | 14 | 2 | 1 | 475 | 1 | 476 | 0.0 | 903 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0572510 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0572510 | 0.803097 | 4.102111e-49 | -8.615850e-47 |
| Msa0035140 | Msa0572510 | 0.803212 | 3.882741e-49 | -8.615850e-47 |
| Msa0140280 | Msa0572510 | 0.819650 | 1.039006e-52 | -8.615850e-47 |
| Msa0140380 | Msa0572510 | 0.807542 | 4.804152e-50 | -8.615850e-47 |
| Msa0200050 | Msa0572510 | 0.817492 | 3.206542e-52 | -8.615850e-47 |
| Msa0232760 | Msa0572510 | 0.812289 | 4.570363e-51 | -8.615850e-47 |
| Msa0233070 | Msa0572510 | 0.840014 | 1.122070e-57 | -8.615850e-47 |
| Msa0380670 | Msa0572510 | 0.810327 | 1.217957e-50 | -8.615850e-47 |
| Msa0383000 | Msa0572510 | 0.814968 | 1.175983e-51 | -8.615850e-47 |
| Msa0400950 | Msa0572510 | 0.801623 | 8.252796e-49 | -8.615850e-47 |
| Msa0433150 | Msa0572510 | 0.824759 | 6.782633e-54 | -8.615850e-47 |
| Msa0447750 | Msa0572510 | 0.809472 | 1.860360e-50 | -8.615850e-47 |
| Msa0524520 | Msa0572510 | 0.810367 | 1.194313e-50 | -8.615850e-47 |
| Msa0571550 | Msa0572510 | 0.838469 | 2.823795e-57 | -8.615850e-47 |
| Msa0571620 | Msa0572510 | 0.811142 | 8.117592e-51 | -8.615850e-47 |
| Msa0572510 | Msa0572530 | 0.999132 | 7.117920e-292 | -8.615850e-47 |
| Msa0572510 | Msa0606100 | 0.800550 | 1.367225e-48 | -8.615850e-47 |
| Msa0572510 | Msa0621710 | 0.825482 | 4.576606e-54 | -8.615850e-47 |
| Msa0572510 | Msa0758650 | 0.801952 | 7.062819e-49 | -8.615850e-47 |
| Msa0572510 | Msa0761670 | 0.822853 | 1.896911e-53 | -8.615850e-47 |
| Msa0572510 | Msa0863620 | 0.823458 | 1.370509e-53 | -8.615850e-47 |
| Msa0572510 | Msa0931590 | 0.820435 | 6.869780e-53 | -8.615850e-47 |
| Msa0572510 | Msa1254540 | 0.804105 | 2.534494e-49 | -8.615850e-47 |
| Msa0572510 | Msa1300460 | 0.807926 | 3.980446e-50 | -8.615850e-47 |
| Msa0572510 | Msa1450190 | 0.829970 | 3.820136e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572510 | MtrunA17_Chr8g0387931 | 96.436 | 477 | 14 | 2 | 1 | 475 | 1 | 476 | 0.0 | 903 |
| Msa0572510 | MtrunA17_Chr8g0370431 | 47.126 | 87 | 40 | 2 | 257 | 337 | 29 | 115 | 1.18e-12 | 65.5 |
| Msa0572510 | MtrunA17_Chr3g0143991 | 41.111 | 90 | 50 | 1 | 255 | 341 | 35 | 124 | 3.71e-12 | 64.3 |
| Msa0572510 | MtrunA17_Chr7g0242251 | 45.205 | 73 | 37 | 1 | 261 | 330 | 47 | 119 | 6.13e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572510 | AT4G11080.1 | 58.261 | 460 | 159 | 7 | 10 | 464 | 11 | 442 | 1.36e-164 | 472 |
| Msa0572510 | AT4G23800.2 | 57.292 | 480 | 158 | 9 | 1 | 467 | 1 | 446 | 1.99e-161 | 464 |
| Msa0572510 | AT4G23800.1 | 57.083 | 480 | 165 | 8 | 1 | 467 | 1 | 452 | 9.87e-161 | 463 |
| Msa0572510 | AT3G51880.4 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 9.42e-12 | 63.5 |
| Msa0572510 | AT3G51880.5 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 1.25e-11 | 63.9 |
| Msa0572510 | AT3G51880.1 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 1.25e-11 | 63.9 |
| Msa0572510 | AT3G51880.3 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 1.25e-11 | 63.9 |
| Msa0572510 | AT3G51880.2 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 1.46e-11 | 63.9 |
| Msa0572510 | AT4G35570.1 | 38.824 | 85 | 49 | 2 | 251 | 332 | 20 | 104 | 5.14e-11 | 60.5 |
| Msa0572510 | AT4G35570.2 | 38.824 | 85 | 49 | 2 | 251 | 332 | 20 | 104 | 5.14e-11 | 60.5 |
| Msa0572510 | AT1G20696.2 | 35.294 | 119 | 72 | 2 | 260 | 375 | 30 | 146 | 6.46e-11 | 60.8 |
Find 105 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGACATTTCAAACATTT+TGG | 0.072036 | 4_1:+75400820 | Msa0572510:CDS |
| CTGCTTCAAGATCTCATCTT+TGG | 0.214069 | 4_1:-75400267 | None:intergenic |
| AAATCCAGAGGCAGAATTTA+AGG | 0.251785 | 4_1:+75400802 | Msa0572510:CDS |
| CTTCTTCAGCATACATGTTA+TGG | 0.262996 | 4_1:+75400628 | Msa0572510:CDS |
| CTTCCTCTTGATTTCTTTGT+GGG | 0.277673 | 4_1:-75400011 | None:intergenic |
| CCACTCTTCAGATGTGATCT+TGG | 0.324738 | 4_1:-75401586 | None:intergenic |
| TGCTCGAAAGATCGTTCCTT+TGG | 0.352886 | 4_1:-75400170 | None:intergenic |
| GCTTGGTATTTCTCCTCATA+AGG | 0.353624 | 4_1:-75400881 | None:intergenic |
| CAAAGTCAATTATTATTCAT+TGG | 0.354257 | 4_1:-75402429 | None:intergenic |
| AAAGCTGACATAGGATGCTT+TGG | 0.369497 | 4_1:-75401085 | None:intergenic |
| GCTTCCTCTTGATTTCTTTG+TGG | 0.376313 | 4_1:-75400012 | None:intergenic |
| GGCTACGATGTTAGCATCAT+TGG | 0.378218 | 4_1:-75400066 | None:intergenic |
| GTTAGAAAGATTCTCAGAAA+TGG | 0.380306 | 4_1:-75400108 | None:intergenic |
| AGGAAGCAGAAAGGCTCTTA+AGG | 0.386589 | 4_1:+75400028 | Msa0572510:CDS |
| CTCTTCTATCATTAGTAAAC+AGG | 0.388495 | 4_1:-75401111 | None:intergenic |
| ATAGGATGCTTTGGTTTCAA+TGG | 0.388725 | 4_1:-75401076 | None:intergenic |
| CATAATTGTACCTCTTCATA+AGG | 0.394411 | 4_1:-75401636 | None:intergenic |
| TTAGAAAGATTCTCAGAAAT+GGG | 0.402955 | 4_1:-75400107 | None:intergenic |
| ATAACAGTTGAATCAGAAAA+TGG | 0.402974 | 4_1:-75402576 | None:intergenic |
| AATTCAGATATGTATTGAAA+TGG | 0.411023 | 4_1:-75399931 | None:intergenic |
| TTCTTCAGCATACATGTTAT+GGG | 0.413577 | 4_1:+75400629 | Msa0572510:CDS |
| TTTCTTGAAGGAATAACAAT+TGG | 0.416584 | 4_1:+75402540 | Msa0572510:three_prime_UTR |
| GTTAGATGGCAAAGAAGAAC+AGG | 0.416883 | 4_1:+75401732 | Msa0572510:intron |
| GTATTGAACACATGATTGAT+TGG | 0.419824 | 4_1:+75402466 | Msa0572510:three_prime_UTR |
| ATGTCCTTAAATTCTGCCTC+TGG | 0.426198 | 4_1:-75400806 | None:intergenic |
| AGCATGTTTCCTCCAACTCC+TGG | 0.432342 | 4_1:-75402137 | None:intergenic |
| ATGATTGATGCAGGTTAAGA+AGG | 0.440565 | 4_1:+75400778 | Msa0572510:intron |
| AAAAGAATTCTGATCCAAAC+AGG | 0.443076 | 4_1:+75401951 | Msa0572510:CDS |
| TTACCTGAAAAGAATATATG+AGG | 0.443750 | 4_1:-75401990 | None:intergenic |
| TGCAGACAACAAGGGTGTCT+TGG | 0.444821 | 4_1:+75401144 | Msa0572510:CDS |
| AGAAGCAAGGAAGAGTATAC+TGG | 0.445784 | 4_1:+75402106 | Msa0572510:CDS |
| TGATTTCTTTGTGGGGATCT+CGG | 0.455261 | 4_1:-75400003 | None:intergenic |
| GCAAGATTTGCTCGAGATGC+AGG | 0.459086 | 4_1:+75400190 | Msa0572510:CDS |
| GGATGCATACAAGAAGGAAA+TGG | 0.463280 | 4_1:+75402364 | Msa0572510:CDS |
| TGTTAGCATCATTGGTTGAT+GGG | 0.472251 | 4_1:-75400058 | None:intergenic |
| CTTCTTCTTGAGCAATTGCA+AGG | 0.476025 | 4_1:-75401861 | None:intergenic |
| ATGGGTGCCCTGAGAAGAAA+AGG | 0.476155 | 4_1:+75400604 | Msa0572510:CDS |
| ATGTTAGCATCATTGGTTGA+TGG | 0.476211 | 4_1:-75400059 | None:intergenic |
| AGATAAGGAACAAGAAAAGA+AGG | 0.480338 | 4_1:+75400569 | Msa0572510:CDS |
| ACACACTTGTTTCAATGAAG+TGG | 0.480362 | 4_1:+75402162 | Msa0572510:CDS |
| CTTGCAATTGCTCAAGAAGA+AGG | 0.484571 | 4_1:+75401862 | Msa0572510:CDS |
| TGTTCCTTATCTTTCACCAT+AGG | 0.488410 | 4_1:-75400558 | None:intergenic |
| GGAGCAATATGCTCAAGAAA+TGG | 0.489402 | 4_1:+75401754 | Msa0572510:CDS |
| GCTCGAGATGCAGGAAAAGA+TGG | 0.490375 | 4_1:+75400199 | Msa0572510:CDS |
| CAAATCAATTGTTGCAAAGG+TGG | 0.491330 | 4_1:+75402397 | Msa0572510:CDS |
| GAATCTTTCTAACCCTAAGA+AGG | 0.491638 | 4_1:+75400118 | Msa0572510:CDS |
| AGTATACTGGAGGAACGTCC+AGG | 0.504758 | 4_1:+75402119 | Msa0572510:CDS |
| AATTGAGGCAATGAAACTCT+TGG | 0.505662 | 4_1:+75400949 | Msa0572510:CDS |
| GGCAATGAAACTCTTGGAAG+TGG | 0.518100 | 4_1:+75400955 | Msa0572510:CDS |
| CTGGAGGAACGTCCAGGAGT+TGG | 0.521217 | 4_1:+75402125 | Msa0572510:CDS |
| CAACAAATCAATTGTTGCAA+AGG | 0.525588 | 4_1:+75402394 | Msa0572510:CDS |
| TTCCTCTTGATTTCTTTGTG+GGG | 0.535254 | 4_1:-75400010 | None:intergenic |
| CTTCAGTCTTCTCTTTCTCG+AGG | 0.536371 | 4_1:-75400232 | None:intergenic |
| AATGATGCTAACATCGTAGC+CGG | 0.536742 | 4_1:+75400068 | Msa0572510:CDS |
| CAAGAAGAACAAGAAAGAGA+AGG | 0.537336 | 4_1:+75401051 | Msa0572510:CDS |
| TGCAAATCTTATGAAGGAAG+AGG | 0.537954 | 4_1:+75401808 | Msa0572510:CDS |
| GAGGAACGTCCAGGAGTTGG+AGG | 0.538510 | 4_1:+75402128 | Msa0572510:CDS |
| ACATGACAGAAGAACAAAAG+AGG | 0.542190 | 4_1:+75401613 | Msa0572510:CDS |
| TGTTATGGGTCAAAGATCAA+TGG | 0.542670 | 4_1:+75400643 | Msa0572510:CDS |
| ATGATGCTAACATCGTAGCC+GGG | 0.542966 | 4_1:+75400069 | Msa0572510:CDS |
| AAAAGAATATATGAGGATGC+AGG | 0.545861 | 4_1:-75401983 | None:intergenic |
| CATAACATGTATGCTGAAGA+AGG | 0.546592 | 4_1:-75400627 | None:intergenic |
| AGATGAGATCTTGAAGCAGA+AGG | 0.547904 | 4_1:+75400271 | Msa0572510:CDS |
| TGGCAAAGCATCTGAAGCAA+TGG | 0.552222 | 4_1:+75402343 | Msa0572510:CDS |
| GTGAGGAAGATAAACAATTG+TGG | 0.559951 | 4_1:+75402318 | Msa0572510:CDS |
| AGCTATCCTTGCAGACAACA+AGG | 0.563397 | 4_1:+75401135 | Msa0572510:CDS |
| ACAAGAGAAGAAGCCTTATG+AGG | 0.567318 | 4_1:+75400868 | Msa0572510:CDS |
| GAAGATAAACAATTGTGGAA+TGG | 0.568238 | 4_1:+75402323 | Msa0572510:CDS |
| GTTAGCATCATTGGTTGATG+GGG | 0.568298 | 4_1:-75400057 | None:intergenic |
| AAAGAAACAACAAAAGCCAA+AGG | 0.574463 | 4_1:+75400154 | Msa0572510:CDS |
| ACAGAAGCAGAAGACTGCTA+TGG | 0.587399 | 4_1:+75400979 | Msa0572510:CDS |
| ATCCCCACAAAGAAATCAAG+AGG | 0.589439 | 4_1:+75400008 | Msa0572510:CDS |
| GAAATCAAGAGGAAGCAGAA+AGG | 0.590805 | 4_1:+75400019 | Msa0572510:CDS |
| CCAAGATCACATCTGAAGAG+TGG | 0.592813 | 4_1:+75401586 | Msa0572510:CDS |
| GGAGGCTGCAAATCTTATGA+AGG | 0.596196 | 4_1:+75401802 | Msa0572510:CDS |
| AGCAATGGATGCATACAAGA+AGG | 0.597525 | 4_1:+75402358 | Msa0572510:CDS |
| ACAAAAGAGGCCTTATGAAG+AGG | 0.601467 | 4_1:+75401626 | Msa0572510:CDS |
| AGACAACAAGGGTGTCTTGG+AGG | 0.604107 | 4_1:+75401147 | Msa0572510:CDS |
| AGACACCCTTGTTGTCTGCA+AGG | 0.607168 | 4_1:-75401141 | None:intergenic |
| TGCATACAAGAAGGAAATGG+AGG | 0.608817 | 4_1:+75402367 | Msa0572510:CDS |
| ATGAACTAGCTAACCATGGT+GGG | 0.609531 | 4_1:-75400356 | None:intergenic |
| AATCTTTCTAACCCTAAGAA+GGG | 0.611188 | 4_1:+75400119 | Msa0572510:CDS |
| TAGAAAGATTCTCAGAAATG+GGG | 0.613698 | 4_1:-75400106 | None:intergenic |
| TTCCATGCAGCAAAGAAGCA+AGG | 0.615026 | 4_1:+75402093 | Msa0572510:intron |
| GAAAGAATTCAAACCCACCA+TGG | 0.617162 | 4_1:+75400343 | Msa0572510:CDS |
| ACTTGTTTCAATGAAGTGGA+AGG | 0.625574 | 4_1:+75402166 | Msa0572510:CDS |
| CAAACTGAAGAAAGATGAGG+AGG | 0.628380 | 4_1:+75401784 | Msa0572510:CDS |
| AGAAAGATTCTCAGAAATGG+GGG | 0.633471 | 4_1:-75400105 | None:intergenic |
| TTATTTGCAAGTAATTACAA+AGG | 0.633815 | 4_1:+75400916 | Msa0572510:CDS |
| TTACAAACTGAAGAAAGATG+AGG | 0.634789 | 4_1:+75401781 | Msa0572510:CDS |
| GCAATATGCTCAAGAAATGG+AGG | 0.638772 | 4_1:+75401757 | Msa0572510:CDS |
| GGGGATCTCGGCAACTACGT+CGG | 0.640463 | 4_1:-75399991 | None:intergenic |
| TGATGCTAACATCGTAGCCG+GGG | 0.646039 | 4_1:+75400070 | Msa0572510:CDS |
| AGCAAGGAAGAGTATACTGG+AGG | 0.646246 | 4_1:+75402109 | Msa0572510:CDS |
| GATGAAGAACTCGAGAATCG+TGG | 0.649671 | 4_1:+75400293 | Msa0572510:CDS |
| ATTTATATAGGATATGAGTG+AGG | 0.652499 | 4_1:+75402301 | Msa0572510:intron |
| GGTCAAAGATCAATGGCATG+AGG | 0.662193 | 4_1:+75400650 | Msa0572510:CDS |
| GGTTAAGAAGGAAAATCCAG+AGG | 0.669344 | 4_1:+75400790 | Msa0572510:intron |
| AATGAACTAGCTAACCATGG+TGG | 0.676281 | 4_1:-75400357 | None:intergenic |
| AGAACTCGAGAATCGTGGCA+AGG | 0.678863 | 4_1:+75400298 | Msa0572510:CDS |
| GCTATCCTTGCAGACAACAA+GGG | 0.682627 | 4_1:+75401136 | Msa0572510:CDS |
| TGCTAACATCGTAGCCGGGG+AGG | 0.682629 | 4_1:+75400073 | Msa0572510:CDS |
| GTTCAATACAGATTTGAACA+TGG | 0.686572 | 4_1:-75402452 | None:intergenic |
| TCAGAAGAAGAAACATAACA+AGG | 0.711427 | 4_1:+75401925 | Msa0572510:CDS |
| TTAGATGGCAAAGAAGAACA+GGG | 0.732826 | 4_1:+75401733 | Msa0572510:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATCATTTTTTTTAATTTTT+AGG | + | chr4_1:75400438-75400457 | Msa0572510:intron | 10.0% |
| !!! | AAGTTATTTTAATAAATTCT+CGG | + | chr4_1:75401385-75401404 | Msa0572510:intron | 10.0% |
| !! | TAATTAATCCAATAAGATAA+TGG | - | chr4_1:75400398-75400417 | None:intergenic | 15.0% |
| !!! | TTTTTTAATTTTTAGGGTTT+AGG | + | chr4_1:75400445-75400464 | Msa0572510:intron | 15.0% |
| !!! | TTTTTAATTTTTAGGGTTTA+GGG | + | chr4_1:75400446-75400465 | Msa0572510:intron | 15.0% |
| !! | TGAATAAAATTTACTTAATG+TGG | + | chr4_1:75401540-75401559 | Msa0572510:intron | 15.0% |
| !! | GAATAAAATTTACTTAATGT+GGG | + | chr4_1:75401541-75401560 | Msa0572510:intron | 15.0% |
| !! | AATAAAATTTACTTAATGTG+GGG | + | chr4_1:75401542-75401561 | Msa0572510:intron | 15.0% |
| !! | AAAATATTAATGAAAACCAA+TGG | - | chr4_1:75401667-75401686 | None:intergenic | 15.0% |
| !! | ACTTTATTATATATTGATGT+GGG | + | chr4_1:75402270-75402289 | Msa0572510:intron | 15.0% |
| !! | CATATCCTATATAAATAAAT+GGG | - | chr4_1:75402297-75402316 | None:intergenic | 15.0% |
| !! | TCATATCCTATATAAATAAA+TGG | - | chr4_1:75402298-75402317 | None:intergenic | 15.0% |
| !! | AATTCAGATATGTATTGAAA+TGG | - | chr4_1:75399934-75399953 | None:intergenic | 20.0% |
| !! | CATATTTACCATTATCTTAT+TGG | + | chr4_1:75400387-75400406 | Msa0572510:intron | 20.0% |
| !! | AGACATTAAATGAATATTAC+AGG | - | chr4_1:75400489-75400508 | None:intergenic | 20.0% |
| !! | TTATTTGCAAGTAATTACAA+AGG | + | chr4_1:75400916-75400935 | Msa0572510:CDS | 20.0% |
| !! | GTAAGCTATTATTATAGAAA+GGG | + | chr4_1:75401248-75401267 | Msa0572510:intron | 20.0% |
| !!! | GTTGTTTTTATAAGCAATAA+TGG | + | chr4_1:75401310-75401329 | Msa0572510:intron | 20.0% |
| !! | ATAAAATTTACTTAATGTGG+GGG | + | chr4_1:75401543-75401562 | Msa0572510:intron | 20.0% |
| !! | CACTTTATTATATATTGATG+TGG | + | chr4_1:75402269-75402288 | Msa0572510:intron | 20.0% |
| !! | CAAAGTCAATTATTATTCAT+TGG | - | chr4_1:75402432-75402451 | None:intergenic | 20.0% |
| !!! | GTAATAATTTCTTTTCTTGA+AGG | + | chr4_1:75402528-75402547 | Msa0572510:three_prime_UTR | 20.0% |
| ! | TTAGAAAGATTCTCAGAAAT+GGG | - | chr4_1:75400110-75400129 | None:intergenic | 25.0% |
| ! | AAGAAGGAAAAGAAAAAGAA+TGG | + | chr4_1:75400585-75400604 | Msa0572510:CDS | 25.0% |
| ! | AGAAGGAAAAGAAAAAGAAT+GGG | + | chr4_1:75400586-75400605 | Msa0572510:CDS | 25.0% |
| ! | CATTATCCTAATAGTTAGAT+TGG | - | chr4_1:75400696-75400715 | None:intergenic | 25.0% |
| ! | ATTGTTGCAATGTGAATTTA+TGG | + | chr4_1:75400751-75400770 | Msa0572510:intron | 25.0% |
| !! | TAAGGACATTTCAAACATTT+TGG | + | chr4_1:75400820-75400839 | Msa0572510:CDS | 25.0% |
| !! | AAGGACATTTCAAACATTTT+GGG | + | chr4_1:75400821-75400840 | Msa0572510:CDS | 25.0% |
| ! | AGGTAATTGATCATATGATT+GGG | + | chr4_1:75401167-75401186 | Msa0572510:intron | 25.0% |
| ! | CGTAAGCTATTATTATAGAA+AGG | + | chr4_1:75401247-75401266 | Msa0572510:intron | 25.0% |
| !!! | TTTCAACTTATTTTCAGAAG+TGG | - | chr4_1:75401337-75401356 | None:intergenic | 25.0% |
| ! | TAAAATTTACTTAATGTGGG+GGG | + | chr4_1:75401544-75401563 | Msa0572510:intron | 25.0% |
| !! | CTTAATTTGAAACTGTTAGA+TGG | + | chr4_1:75401718-75401737 | Msa0572510:intron | 25.0% |
| ! | AAAAACTGAAAACATGATCA+AGG | + | chr4_1:75401886-75401905 | Msa0572510:CDS | 25.0% |
| ! | TTACCTGAAAAGAATATATG+AGG | - | chr4_1:75401993-75402012 | None:intergenic | 25.0% |
| ! | ATTTATATAGGATATGAGTG+AGG | + | chr4_1:75402301-75402320 | Msa0572510:intron | 25.0% |
| ! | TTTCTTGAAGGAATAACAAT+TGG | + | chr4_1:75402540-75402559 | Msa0572510:three_prime_UTR | 25.0% |
| !! | TTTCTCTCTCGTTTTAACAA+TGG | + | chr4_1:75399968-75399987 | Msa0572510:exon | 30.0% |
| TAGAAAGATTCTCAGAAATG+GGG | - | chr4_1:75400109-75400128 | None:intergenic | 30.0% | |
| GTTAGAAAGATTCTCAGAAA+TGG | - | chr4_1:75400111-75400130 | None:intergenic | 30.0% | |
| AATCTTTCTAACCCTAAGAA+GGG | + | chr4_1:75400119-75400138 | Msa0572510:CDS | 30.0% | |
| AAAGAAACAACAAAAGCCAA+AGG | + | chr4_1:75400154-75400173 | Msa0572510:CDS | 30.0% | |
| ! | TTTAGGGTTTGTGTTGAAAT+TGG | + | chr4_1:75400462-75400481 | Msa0572510:intron | 30.0% |
| ! | CATTGTACAGAATTTTCCTA+TGG | + | chr4_1:75400542-75400561 | Msa0572510:intron | 30.0% |
| ! | TTTTCCTATGGTGAAAGATA+AGG | + | chr4_1:75400554-75400573 | Msa0572510:CDS | 30.0% |
| AGATAAGGAACAAGAAAAGA+AGG | + | chr4_1:75400569-75400588 | Msa0572510:CDS | 30.0% | |
| TTCTTCAGCATACATGTTAT+GGG | + | chr4_1:75400629-75400648 | Msa0572510:CDS | 30.0% | |
| AGCAATCCAATCTAACTATT+AGG | + | chr4_1:75400687-75400706 | Msa0572510:intron | 30.0% | |
| ! | AGGACATTTCAAACATTTTG+GGG | + | chr4_1:75400822-75400841 | Msa0572510:CDS | 30.0% |
| AAAGGAAAAACGTGAAATTG+AGG | + | chr4_1:75400934-75400953 | Msa0572510:CDS | 30.0% | |
| CTCTTCTATCATTAGTAAAC+AGG | - | chr4_1:75401114-75401133 | None:intergenic | 30.0% | |
| GAGGTAATTGATCATATGAT+TGG | + | chr4_1:75401166-75401185 | Msa0572510:intron | 30.0% | |
| GAAAGAGTCTCACAAAATAA+TGG | + | chr4_1:75401407-75401426 | Msa0572510:intron | 30.0% | |
| CATAATTGTACCTCTTCATA+AGG | - | chr4_1:75401639-75401658 | None:intergenic | 30.0% | |
| GTACAATTATGCAAAACCAT+TGG | + | chr4_1:75401648-75401667 | Msa0572510:intron | 30.0% | |
| TTACAAACTGAAGAAAGATG+AGG | + | chr4_1:75401781-75401800 | Msa0572510:CDS | 30.0% | |
| TCAGAAGAAGAAACATAACA+AGG | + | chr4_1:75401925-75401944 | Msa0572510:CDS | 30.0% | |
| AAAAGAATTCTGATCCAAAC+AGG | + | chr4_1:75401951-75401970 | Msa0572510:CDS | 30.0% | |
| AAAAGAATATATGAGGATGC+AGG | - | chr4_1:75401986-75402005 | None:intergenic | 30.0% | |
| ! | CATCCTCATATATTCTTTTC+AGG | + | chr4_1:75401987-75402006 | Msa0572510:CDS | 30.0% |
| TGGGTCCCATTTATTTATAT+AGG | + | chr4_1:75402289-75402308 | Msa0572510:intron | 30.0% | |
| GAAGATAAACAATTGTGGAA+TGG | + | chr4_1:75402323-75402342 | Msa0572510:CDS | 30.0% | |
| CAACAAATCAATTGTTGCAA+AGG | + | chr4_1:75402394-75402413 | Msa0572510:CDS | 30.0% | |
| GTTCAATACAGATTTGAACA+TGG | - | chr4_1:75402455-75402474 | None:intergenic | 30.0% | |
| GTATTGAACACATGATTGAT+TGG | + | chr4_1:75402466-75402485 | Msa0572510:three_prime_UTR | 30.0% | |
| TTCCTCTTGATTTCTTTGTG+GGG | - | chr4_1:75400013-75400032 | None:intergenic | 35.0% | |
| CTTCCTCTTGATTTCTTTGT+GGG | - | chr4_1:75400014-75400033 | None:intergenic | 35.0% | |
| ! | TGTTAGCATCATTGGTTGAT+GGG | - | chr4_1:75400061-75400080 | None:intergenic | 35.0% |
| ! | ATGTTAGCATCATTGGTTGA+TGG | - | chr4_1:75400062-75400081 | None:intergenic | 35.0% |
| AGAAAGATTCTCAGAAATGG+GGG | - | chr4_1:75400108-75400127 | None:intergenic | 35.0% | |
| GAATCTTTCTAACCCTAAGA+AGG | + | chr4_1:75400118-75400137 | Msa0572510:CDS | 35.0% | |
| TGAAATGAACTAGCTAACCA+TGG | - | chr4_1:75400363-75400382 | None:intergenic | 35.0% | |
| TGTTCCTTATCTTTCACCAT+AGG | - | chr4_1:75400561-75400580 | None:intergenic | 35.0% | |
| CATAACATGTATGCTGAAGA+AGG | - | chr4_1:75400630-75400649 | None:intergenic | 35.0% | |
| CTTCTTCAGCATACATGTTA+TGG | + | chr4_1:75400628-75400647 | Msa0572510:CDS | 35.0% | |
| TGTTATGGGTCAAAGATCAA+TGG | + | chr4_1:75400643-75400662 | Msa0572510:CDS | 35.0% | |
| ! | TATGGATTGATGATTGATGC+AGG | + | chr4_1:75400769-75400788 | Msa0572510:intron | 35.0% |
| ATGATTGATGCAGGTTAAGA+AGG | + | chr4_1:75400778-75400797 | Msa0572510:intron | 35.0% | |
| AAATCCAGAGGCAGAATTTA+AGG | + | chr4_1:75400802-75400821 | Msa0572510:CDS | 35.0% | |
| !! | CAAACATTTTGGGGACTAAA+TGG | + | chr4_1:75400831-75400850 | Msa0572510:CDS | 35.0% |
| GAAATACCAAGCTGAAAAAG+AGG | + | chr4_1:75400892-75400911 | Msa0572510:CDS | 35.0% | |
| !!! | AATAAGCCTCTTTTTCAGCT+TGG | - | chr4_1:75400901-75400920 | None:intergenic | 35.0% |
| AATTGAGGCAATGAAACTCT+TGG | + | chr4_1:75400949-75400968 | Msa0572510:CDS | 35.0% | |
| CAAGAAGAACAAGAAAGAGA+AGG | + | chr4_1:75401051-75401070 | Msa0572510:CDS | 35.0% | |
| ! | ATAGGATGCTTTGGTTTCAA+TGG | - | chr4_1:75401079-75401098 | None:intergenic | 35.0% |
| AACAGGAAAAAAGCTGACAT+AGG | - | chr4_1:75401097-75401116 | None:intergenic | 35.0% | |
| ACATGACAGAAGAACAAAAG+AGG | + | chr4_1:75401613-75401632 | Msa0572510:CDS | 35.0% | |
| TTAGATGGCAAAGAAGAACA+GGG | + | chr4_1:75401733-75401752 | Msa0572510:intron | 35.0% | |
| TGCAAATCTTATGAAGGAAG+AGG | + | chr4_1:75401808-75401827 | Msa0572510:CDS | 35.0% | |
| ACACACTTGTTTCAATGAAG+TGG | + | chr4_1:75402162-75402181 | Msa0572510:CDS | 35.0% | |
| ACTTGTTTCAATGAAGTGGA+AGG | + | chr4_1:75402166-75402185 | Msa0572510:CDS | 35.0% | |
| GTGAGGAAGATAAACAATTG+TGG | + | chr4_1:75402318-75402337 | Msa0572510:CDS | 35.0% | |
| CAAATCAATTGTTGCAAAGG+TGG | + | chr4_1:75402397-75402416 | Msa0572510:CDS | 35.0% | |
| TGATTTCTTTGTGGGGATCT+CGG | - | chr4_1:75400006-75400025 | None:intergenic | 40.0% | |
| ATCCCCACAAAGAAATCAAG+AGG | + | chr4_1:75400008-75400027 | Msa0572510:CDS | 40.0% | |
| GCTTCCTCTTGATTTCTTTG+TGG | - | chr4_1:75400015-75400034 | None:intergenic | 40.0% | |
| GAAATCAAGAGGAAGCAGAA+AGG | + | chr4_1:75400019-75400038 | Msa0572510:CDS | 40.0% | |
| ! | GTTAGCATCATTGGTTGATG+GGG | - | chr4_1:75400060-75400079 | None:intergenic | 40.0% |
| AATGATGCTAACATCGTAGC+CGG | + | chr4_1:75400068-75400087 | Msa0572510:CDS | 40.0% | |
| ! | ATGCAGCTTTTCCCTTCTTA+GGG | - | chr4_1:75400133-75400152 | None:intergenic | 40.0% |
| CTGCTTCAAGATCTCATCTT+TGG | - | chr4_1:75400270-75400289 | None:intergenic | 40.0% | |
| AGATGAGATCTTGAAGCAGA+AGG | + | chr4_1:75400271-75400290 | Msa0572510:CDS | 40.0% | |
| GAAAGAATTCAAACCCACCA+TGG | + | chr4_1:75400343-75400362 | Msa0572510:CDS | 40.0% | |
| ATGAACTAGCTAACCATGGT+GGG | - | chr4_1:75400359-75400378 | None:intergenic | 40.0% | |
| AATGAACTAGCTAACCATGG+TGG | - | chr4_1:75400360-75400379 | None:intergenic | 40.0% | |
| ! | AAGAAGGCCTTTTCTTCTCA+GGG | - | chr4_1:75400614-75400633 | None:intergenic | 40.0% |
| GGTTAAGAAGGAAAATCCAG+AGG | + | chr4_1:75400790-75400809 | Msa0572510:intron | 40.0% | |
| ATGTCCTTAAATTCTGCCTC+TGG | - | chr4_1:75400809-75400828 | None:intergenic | 40.0% | |
| ! | ACAAGAGAAGAAGCCTTATG+AGG | + | chr4_1:75400868-75400887 | Msa0572510:CDS | 40.0% |
| GCTTGGTATTTCTCCTCATA+AGG | - | chr4_1:75400884-75400903 | None:intergenic | 40.0% | |
| AAAGCTGACATAGGATGCTT+TGG | - | chr4_1:75401088-75401107 | None:intergenic | 40.0% | |
| AATGGAGACATGCTTGTGTT+AGG | + | chr4_1:75401425-75401444 | Msa0572510:intron | 40.0% | |
| ! | ACAAAAGAGGCCTTATGAAG+AGG | + | chr4_1:75401626-75401645 | Msa0572510:CDS | 40.0% |
| GTTAGATGGCAAAGAAGAAC+AGG | + | chr4_1:75401732-75401751 | Msa0572510:intron | 40.0% | |
| GGAGCAATATGCTCAAGAAA+TGG | + | chr4_1:75401754-75401773 | Msa0572510:CDS | 40.0% | |
| GCAATATGCTCAAGAAATGG+AGG | + | chr4_1:75401757-75401776 | Msa0572510:CDS | 40.0% | |
| CAAACTGAAGAAAGATGAGG+AGG | + | chr4_1:75401784-75401803 | Msa0572510:CDS | 40.0% | |
| CTTCTTCTTGAGCAATTGCA+AGG | - | chr4_1:75401864-75401883 | None:intergenic | 40.0% | |
| CTTGCAATTGCTCAAGAAGA+AGG | + | chr4_1:75401862-75401881 | Msa0572510:CDS | 40.0% | |
| ! | TATGAGGATGCAGGTCTTTT+AGG | - | chr4_1:75401977-75401996 | None:intergenic | 40.0% |
| ! | AGAAGCAAGGAAGAGTATAC+TGG | + | chr4_1:75402106-75402125 | Msa0572510:CDS | 40.0% |
| AGCAATGGATGCATACAAGA+AGG | + | chr4_1:75402358-75402377 | Msa0572510:CDS | 40.0% | |
| GGATGCATACAAGAAGGAAA+TGG | + | chr4_1:75402364-75402383 | Msa0572510:CDS | 40.0% | |
| TGCATACAAGAAGGAAATGG+AGG | + | chr4_1:75402367-75402386 | Msa0572510:CDS | 40.0% | |
| AGGAAGCAGAAAGGCTCTTA+AGG | + | chr4_1:75400028-75400047 | Msa0572510:CDS | 45.0% | |
| GGCTACGATGTTAGCATCAT+TGG | - | chr4_1:75400069-75400088 | None:intergenic | 45.0% | |
| ATGATGCTAACATCGTAGCC+GGG | + | chr4_1:75400069-75400088 | Msa0572510:CDS | 45.0% | |
| ! | GATGCAGCTTTTCCCTTCTT+AGG | - | chr4_1:75400134-75400153 | None:intergenic | 45.0% |
| TGCTCGAAAGATCGTTCCTT+TGG | - | chr4_1:75400173-75400192 | None:intergenic | 45.0% | |
| CTTCAGTCTTCTCTTTCTCG+AGG | - | chr4_1:75400235-75400254 | None:intergenic | 45.0% | |
| GATGAAGAACTCGAGAATCG+TGG | + | chr4_1:75400293-75400312 | Msa0572510:CDS | 45.0% | |
| ! | GAAGAAGGCCTTTTCTTCTC+AGG | - | chr4_1:75400615-75400634 | None:intergenic | 45.0% |
| GGTCAAAGATCAATGGCATG+AGG | + | chr4_1:75400650-75400669 | Msa0572510:CDS | 45.0% | |
| GGCAATGAAACTCTTGGAAG+TGG | + | chr4_1:75400955-75400974 | Msa0572510:CDS | 45.0% | |
| ACAGAAGCAGAAGACTGCTA+TGG | + | chr4_1:75400979-75400998 | Msa0572510:CDS | 45.0% | |
| AGCTATCCTTGCAGACAACA+AGG | + | chr4_1:75401135-75401154 | Msa0572510:CDS | 45.0% | |
| GCTATCCTTGCAGACAACAA+GGG | + | chr4_1:75401136-75401155 | Msa0572510:CDS | 45.0% | |
| TGCTTGTGTTAGGTGGAATG+CGG | + | chr4_1:75401435-75401454 | Msa0572510:intron | 45.0% | |
| TCTTGAACCTGGATCGTGTT+CGG | + | chr4_1:75401492-75401511 | Msa0572510:intron | 45.0% | |
| CCACTCTTCAGATGTGATCT+TGG | - | chr4_1:75401589-75401608 | None:intergenic | 45.0% | |
| CCAAGATCACATCTGAAGAG+TGG | + | chr4_1:75401586-75401605 | Msa0572510:CDS | 45.0% | |
| GGAGGCTGCAAATCTTATGA+AGG | + | chr4_1:75401802-75401821 | Msa0572510:CDS | 45.0% | |
| TTCCATGCAGCAAAGAAGCA+AGG | + | chr4_1:75402093-75402112 | Msa0572510:intron | 45.0% | |
| TTCCTTGCTTCTTTGCTGCA+TGG | - | chr4_1:75402098-75402117 | None:intergenic | 45.0% | |
| ! | AGCAAGGAAGAGTATACTGG+AGG | + | chr4_1:75402109-75402128 | Msa0572510:CDS | 45.0% |
| ! | TGGCAAAGCATCTGAAGCAA+TGG | + | chr4_1:75402343-75402362 | Msa0572510:CDS | 45.0% |
| !!! | ATCATTTTTTTTAATTTTTA+GGG | + | chr4_1:75400439-75400458 | Msa0572510:intron | 5.0% |
| TGATGCTAACATCGTAGCCG+GGG | + | chr4_1:75400070-75400089 | Msa0572510:CDS | 50.0% | |
| ! | GCAAGATTTGCTCGAGATGC+AGG | + | chr4_1:75400190-75400209 | Msa0572510:CDS | 50.0% |
| GCTCGAGATGCAGGAAAAGA+TGG | + | chr4_1:75400199-75400218 | Msa0572510:CDS | 50.0% | |
| AGAACTCGAGAATCGTGGCA+AGG | + | chr4_1:75400298-75400317 | Msa0572510:CDS | 50.0% | |
| ATGGGTGCCCTGAGAAGAAA+AGG | + | chr4_1:75400604-75400623 | Msa0572510:CDS | 50.0% | |
| ! | AGACACCCTTGTTGTCTGCA+AGG | - | chr4_1:75401144-75401163 | None:intergenic | 50.0% |
| !! | TGCAGACAACAAGGGTGTCT+TGG | + | chr4_1:75401144-75401163 | Msa0572510:CDS | 50.0% |
| !! | AGACAACAAGGGTGTCTTGG+AGG | + | chr4_1:75401147-75401166 | Msa0572510:CDS | 50.0% |
| GGAGACATGCTTGTGTTAGG+TGG | + | chr4_1:75401428-75401447 | Msa0572510:intron | 50.0% | |
| GGAATGCGGATTCCTTGCTA+TGG | + | chr4_1:75401449-75401468 | Msa0572510:intron | 50.0% | |
| ! | ATGCGGATTCCTTGCTATGG+AGG | + | chr4_1:75401452-75401471 | Msa0572510:intron | 50.0% |
| GTTCAAGAACGCGTGAATGC+GGG | - | chr4_1:75401480-75401499 | None:intergenic | 50.0% | |
| GGTTCAAGAACGCGTGAATG+CGG | - | chr4_1:75401481-75401500 | None:intergenic | 50.0% | |
| CATTCACGCGTTCTTGAACC+TGG | + | chr4_1:75401481-75401500 | Msa0572510:intron | 50.0% | |
| ! | GCAGGTCTTTTAGGCCTGTT+TGG | - | chr4_1:75401968-75401987 | None:intergenic | 50.0% |
| AGTATACTGGAGGAACGTCC+AGG | + | chr4_1:75402119-75402138 | Msa0572510:CDS | 50.0% | |
| AGCATGTTTCCTCCAACTCC+TGG | - | chr4_1:75402140-75402159 | None:intergenic | 50.0% | |
| ATGCGGGTTCCTCCATAGCA+AGG | - | chr4_1:75401464-75401483 | None:intergenic | 55.0% | |
| CTTGACACCGAACACGATCC+AGG | - | chr4_1:75401502-75401521 | None:intergenic | 55.0% | |
| TGGGGGGTGATGTGCAATTC+AGG | + | chr4_1:75401560-75401579 | Msa0572510:intron | 55.0% | |
| GGGGATCTCGGCAACTACGT+CGG | - | chr4_1:75399994-75400013 | None:intergenic | 60.0% | |
| TGCTAACATCGTAGCCGGGG+AGG | + | chr4_1:75400073-75400092 | Msa0572510:CDS | 60.0% | |
| CTGGAGGAACGTCCAGGAGT+TGG | + | chr4_1:75402125-75402144 | Msa0572510:CDS | 60.0% | |
| GAGGAACGTCCAGGAGTTGG+AGG | + | chr4_1:75402128-75402147 | Msa0572510:CDS | 60.0% | |
| GGGGGAGACAGCTGCCTCCC+CGG | - | chr4_1:75400090-75400109 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 75399928 | 75402583 | 75399928 | ID=Msa0572510;Name=Msa0572510 |
| chr4_1 | mRNA | 75399928 | 75402583 | 75399928 | ID=Msa0572510-mRNA-1;Parent=Msa0572510;Name=Msa0572510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=59|1|1|1|1|1|7|144|475 |
| chr4_1 | exon | 75399928 | 75400364 | 75399928 | ID=Msa0572510-mRNA-1:exon:26110;Parent=Msa0572510-mRNA-1 |
| chr4_1 | exon | 75400552 | 75400671 | 75400552 | ID=Msa0572510-mRNA-1:exon:26111;Parent=Msa0572510-mRNA-1 |
| chr4_1 | exon | 75400791 | 75401168 | 75400791 | ID=Msa0572510-mRNA-1:exon:26112;Parent=Msa0572510-mRNA-1 |
| chr4_1 | exon | 75401582 | 75401647 | 75401582 | ID=Msa0572510-mRNA-1:exon:26113;Parent=Msa0572510-mRNA-1 |
| chr4_1 | exon | 75401737 | 75402008 | 75401737 | ID=Msa0572510-mRNA-1:exon:26114;Parent=Msa0572510-mRNA-1 |
| chr4_1 | exon | 75402103 | 75402187 | 75402103 | ID=Msa0572510-mRNA-1:exon:26115;Parent=Msa0572510-mRNA-1 |
| chr4_1 | exon | 75402311 | 75402583 | 75402311 | ID=Msa0572510-mRNA-1:exon:26116;Parent=Msa0572510-mRNA-1 |
| chr4_1 | five_prime_UTR | 75399928 | 75399986 | 75399928 | ID=Msa0572510-mRNA-1:five_prime_utr;Parent=Msa0572510-mRNA-1 |
| chr4_1 | CDS | 75399987 | 75400364 | 75399987 | ID=Msa0572510-mRNA-1:cds;Parent=Msa0572510-mRNA-1 |
| chr4_1 | CDS | 75400552 | 75400671 | 75400552 | ID=Msa0572510-mRNA-1:cds;Parent=Msa0572510-mRNA-1 |
| chr4_1 | CDS | 75400791 | 75401168 | 75400791 | ID=Msa0572510-mRNA-1:cds;Parent=Msa0572510-mRNA-1 |
| chr4_1 | CDS | 75401582 | 75401647 | 75401582 | ID=Msa0572510-mRNA-1:cds;Parent=Msa0572510-mRNA-1 |
| chr4_1 | CDS | 75401737 | 75402008 | 75401737 | ID=Msa0572510-mRNA-1:cds;Parent=Msa0572510-mRNA-1 |
| chr4_1 | CDS | 75402103 | 75402187 | 75402103 | ID=Msa0572510-mRNA-1:cds;Parent=Msa0572510-mRNA-1 |
| chr4_1 | CDS | 75402311 | 75402439 | 75402311 | ID=Msa0572510-mRNA-1:cds;Parent=Msa0572510-mRNA-1 |
| chr4_1 | three_prime_UTR | 75402440 | 75402583 | 75402440 | ID=Msa0572510-mRNA-1:three_prime_utr;Parent=Msa0572510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
