Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572530 | XP_013447173.1 | 96.436 | 477 | 14 | 2 | 1 | 475 | 1 | 476 | 0.0 | 903 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572530 | sp|Q9T012|HMG13_ARATH | 58.261 | 460 | 159 | 7 | 10 | 464 | 11 | 442 | 1.34e-163 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572530 | A0A072U5S8 | 96.436 | 477 | 14 | 2 | 1 | 475 | 1 | 476 | 0.0 | 903 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0572530 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0572530 | 0.802771 | 4.790312e-49 | -8.615850e-47 |
| Msa0035140 | Msa0572530 | 0.802926 | 4.449025e-49 | -8.615850e-47 |
| Msa0140280 | Msa0572530 | 0.819328 | 1.230256e-52 | -8.615850e-47 |
| Msa0140380 | Msa0572530 | 0.806123 | 9.582656e-50 | -8.615850e-47 |
| Msa0200050 | Msa0572530 | 0.818579 | 1.820609e-52 | -8.615850e-47 |
| Msa0232760 | Msa0572530 | 0.810017 | 1.420304e-50 | -8.615850e-47 |
| Msa0233070 | Msa0572530 | 0.838904 | 2.178824e-57 | -8.615850e-47 |
| Msa0380670 | Msa0572530 | 0.811806 | 5.824166e-51 | -8.615850e-47 |
| Msa0383000 | Msa0572530 | 0.813323 | 2.712469e-51 | -8.615850e-47 |
| Msa0400950 | Msa0572530 | 0.801793 | 7.613667e-49 | -8.615850e-47 |
| Msa0430300 | Msa0572530 | 0.800179 | 1.627374e-48 | -8.615850e-47 |
| Msa0433150 | Msa0572530 | 0.822603 | 2.168529e-53 | -8.615850e-47 |
| Msa0447750 | Msa0572530 | 0.808727 | 2.686388e-50 | -8.615850e-47 |
| Msa0524520 | Msa0572530 | 0.808302 | 3.310523e-50 | -8.615850e-47 |
| Msa0571550 | Msa0572530 | 0.838541 | 2.704816e-57 | -8.615850e-47 |
| Msa0571620 | Msa0572530 | 0.811637 | 6.338569e-51 | -8.615850e-47 |
| Msa0572510 | Msa0572530 | 0.999132 | 7.117920e-292 | -8.615850e-47 |
| Msa0572530 | Msa0606100 | 0.800950 | 1.133027e-48 | -8.615850e-47 |
| Msa0572530 | Msa0621710 | 0.823733 | 1.181847e-53 | -8.615850e-47 |
| Msa0572530 | Msa0758650 | 0.800256 | 1.569371e-48 | -8.615850e-47 |
| Msa0572530 | Msa0761670 | 0.820919 | 5.317680e-53 | -8.615850e-47 |
| Msa0572530 | Msa0863620 | 0.822195 | 2.697193e-53 | -8.615850e-47 |
| Msa0572530 | Msa0931590 | 0.818764 | 1.653088e-52 | -8.615850e-47 |
| Msa0572530 | Msa1254540 | 0.802632 | 5.117265e-49 | -8.615850e-47 |
| Msa0572530 | Msa1300460 | 0.807128 | 5.881001e-50 | -8.615850e-47 |
| Msa0572530 | Msa1450190 | 0.828296 | 9.728446e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572530 | MtrunA17_Chr8g0387931 | 96.436 | 477 | 14 | 2 | 1 | 475 | 1 | 476 | 0.0 | 903 |
| Msa0572530 | MtrunA17_Chr8g0370431 | 47.126 | 87 | 40 | 2 | 257 | 337 | 29 | 115 | 1.18e-12 | 65.5 |
| Msa0572530 | MtrunA17_Chr3g0143991 | 41.111 | 90 | 50 | 1 | 255 | 341 | 35 | 124 | 3.71e-12 | 64.3 |
| Msa0572530 | MtrunA17_Chr7g0242251 | 45.205 | 73 | 37 | 1 | 261 | 330 | 47 | 119 | 6.13e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0572530 | AT4G11080.1 | 58.261 | 460 | 159 | 7 | 10 | 464 | 11 | 442 | 1.36e-164 | 472 |
| Msa0572530 | AT4G23800.2 | 57.292 | 480 | 158 | 9 | 1 | 467 | 1 | 446 | 1.99e-161 | 464 |
| Msa0572530 | AT4G23800.1 | 57.083 | 480 | 165 | 8 | 1 | 467 | 1 | 452 | 9.87e-161 | 463 |
| Msa0572530 | AT3G51880.4 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 9.42e-12 | 63.5 |
| Msa0572530 | AT3G51880.5 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 1.25e-11 | 63.9 |
| Msa0572530 | AT3G51880.1 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 1.25e-11 | 63.9 |
| Msa0572530 | AT3G51880.3 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 1.25e-11 | 63.9 |
| Msa0572530 | AT3G51880.2 | 42.857 | 84 | 44 | 2 | 251 | 330 | 38 | 121 | 1.46e-11 | 63.9 |
| Msa0572530 | AT4G35570.1 | 38.824 | 85 | 49 | 2 | 251 | 332 | 20 | 104 | 5.14e-11 | 60.5 |
| Msa0572530 | AT4G35570.2 | 38.824 | 85 | 49 | 2 | 251 | 332 | 20 | 104 | 5.14e-11 | 60.5 |
| Msa0572530 | AT1G20696.2 | 35.294 | 119 | 72 | 2 | 260 | 375 | 30 | 146 | 6.46e-11 | 60.8 |
Find 105 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGACATTTCAAACATTT+TGG | 0.072036 | 4_1:+75427661 | Msa0572530:CDS |
| CTGCTTCAAGATCTCATCTT+TGG | 0.214069 | 4_1:-75427108 | None:intergenic |
| AAATCCAGAGGCAGAATTTA+AGG | 0.251785 | 4_1:+75427643 | Msa0572530:CDS |
| CTTCTTCAGCATACATGTTA+TGG | 0.262996 | 4_1:+75427469 | Msa0572530:CDS |
| CTTCCTCTTGATTTCTTTGT+GGG | 0.277673 | 4_1:-75426852 | None:intergenic |
| CCACTCTTCAGATGTGATCT+TGG | 0.324738 | 4_1:-75428427 | None:intergenic |
| TGCTCGAAAGATCGTTCCTT+TGG | 0.352886 | 4_1:-75427011 | None:intergenic |
| GCTTGGTATTTCTCCTCATA+AGG | 0.353624 | 4_1:-75427722 | None:intergenic |
| CAAAGTCAATTATTATTCAT+TGG | 0.354257 | 4_1:-75429270 | None:intergenic |
| AAAGCTGACATAGGATGCTT+TGG | 0.369497 | 4_1:-75427926 | None:intergenic |
| GCTTCCTCTTGATTTCTTTG+TGG | 0.376313 | 4_1:-75426853 | None:intergenic |
| GGCTACGATGTTAGCATCAT+TGG | 0.378218 | 4_1:-75426907 | None:intergenic |
| GTTAGAAAGATTCTCAGAAA+TGG | 0.380306 | 4_1:-75426949 | None:intergenic |
| AGGAAGCAGAAAGGCTCTTA+AGG | 0.386589 | 4_1:+75426869 | Msa0572530:CDS |
| CTCTTCTATCATTAGTAAAC+AGG | 0.388495 | 4_1:-75427952 | None:intergenic |
| ATAGGATGCTTTGGTTTCAA+TGG | 0.388725 | 4_1:-75427917 | None:intergenic |
| CATAATTGTACCTCTTCATA+AGG | 0.394411 | 4_1:-75428477 | None:intergenic |
| TTAGAAAGATTCTCAGAAAT+GGG | 0.402955 | 4_1:-75426948 | None:intergenic |
| ATAACAGTTGAATCAGAAAA+TGG | 0.402974 | 4_1:-75429417 | None:intergenic |
| AATTCAGATATGTATTGAAA+TGG | 0.411023 | 4_1:-75426772 | None:intergenic |
| TTCTTCAGCATACATGTTAT+GGG | 0.413577 | 4_1:+75427470 | Msa0572530:CDS |
| TTTCTTGAAGGAATAACAAT+TGG | 0.416584 | 4_1:+75429381 | Msa0572530:three_prime_UTR |
| GTTAGATGGCAAAGAAGAAC+AGG | 0.416883 | 4_1:+75428573 | Msa0572530:intron |
| GTATTGAACACATGATTGAT+TGG | 0.419824 | 4_1:+75429307 | Msa0572530:three_prime_UTR |
| ATGTCCTTAAATTCTGCCTC+TGG | 0.426198 | 4_1:-75427647 | None:intergenic |
| AGCATGTTTCCTCCAACTCC+TGG | 0.432342 | 4_1:-75428978 | None:intergenic |
| ATGATTGATGCAGGTTAAGA+AGG | 0.440565 | 4_1:+75427619 | Msa0572530:intron |
| AAAAGAATTCTGATCCAAAC+AGG | 0.443076 | 4_1:+75428792 | Msa0572530:CDS |
| TTACCTGAAAAGAATATATG+AGG | 0.443750 | 4_1:-75428831 | None:intergenic |
| TGCAGACAACAAGGGTGTCT+TGG | 0.444821 | 4_1:+75427985 | Msa0572530:CDS |
| AGAAGCAAGGAAGAGTATAC+TGG | 0.445784 | 4_1:+75428947 | Msa0572530:CDS |
| TGATTTCTTTGTGGGGATCT+CGG | 0.455261 | 4_1:-75426844 | None:intergenic |
| GCAAGATTTGCTCGAGATGC+AGG | 0.459086 | 4_1:+75427031 | Msa0572530:CDS |
| GGATGCATACAAGAAGGAAA+TGG | 0.463280 | 4_1:+75429205 | Msa0572530:CDS |
| TGTTAGCATCATTGGTTGAT+GGG | 0.472251 | 4_1:-75426899 | None:intergenic |
| CTTCTTCTTGAGCAATTGCA+AGG | 0.476025 | 4_1:-75428702 | None:intergenic |
| ATGGGTGCCCTGAGAAGAAA+AGG | 0.476155 | 4_1:+75427445 | Msa0572530:CDS |
| ATGTTAGCATCATTGGTTGA+TGG | 0.476211 | 4_1:-75426900 | None:intergenic |
| AGATAAGGAACAAGAAAAGA+AGG | 0.480338 | 4_1:+75427410 | Msa0572530:CDS |
| ACACACTTGTTTCAATGAAG+TGG | 0.480362 | 4_1:+75429003 | Msa0572530:CDS |
| CTTGCAATTGCTCAAGAAGA+AGG | 0.484571 | 4_1:+75428703 | Msa0572530:CDS |
| TGTTCCTTATCTTTCACCAT+AGG | 0.488410 | 4_1:-75427399 | None:intergenic |
| GGAGCAATATGCTCAAGAAA+TGG | 0.489402 | 4_1:+75428595 | Msa0572530:CDS |
| GCTCGAGATGCAGGAAAAGA+TGG | 0.490375 | 4_1:+75427040 | Msa0572530:CDS |
| CAAATCAATTGTTGCAAAGG+TGG | 0.491330 | 4_1:+75429238 | Msa0572530:CDS |
| GAATCTTTCTAACCCTAAGA+AGG | 0.491638 | 4_1:+75426959 | Msa0572530:CDS |
| AGTATACTGGAGGAACGTCC+AGG | 0.504758 | 4_1:+75428960 | Msa0572530:CDS |
| AATTGAGGCAATGAAACTCT+TGG | 0.505662 | 4_1:+75427790 | Msa0572530:CDS |
| GGCAATGAAACTCTTGGAAG+TGG | 0.518100 | 4_1:+75427796 | Msa0572530:CDS |
| CTGGAGGAACGTCCAGGAGT+TGG | 0.521217 | 4_1:+75428966 | Msa0572530:CDS |
| CAACAAATCAATTGTTGCAA+AGG | 0.525588 | 4_1:+75429235 | Msa0572530:CDS |
| TTCCTCTTGATTTCTTTGTG+GGG | 0.535254 | 4_1:-75426851 | None:intergenic |
| CTTCAGTCTTCTCTTTCTCG+AGG | 0.536371 | 4_1:-75427073 | None:intergenic |
| AATGATGCTAACATCGTAGC+CGG | 0.536742 | 4_1:+75426909 | Msa0572530:CDS |
| CAAGAAGAACAAGAAAGAGA+AGG | 0.537336 | 4_1:+75427892 | Msa0572530:CDS |
| TGCAAATCTTATGAAGGAAG+AGG | 0.537954 | 4_1:+75428649 | Msa0572530:CDS |
| GAGGAACGTCCAGGAGTTGG+AGG | 0.538510 | 4_1:+75428969 | Msa0572530:CDS |
| ACATGACAGAAGAACAAAAG+AGG | 0.542190 | 4_1:+75428454 | Msa0572530:CDS |
| TGTTATGGGTCAAAGATCAA+TGG | 0.542670 | 4_1:+75427484 | Msa0572530:CDS |
| ATGATGCTAACATCGTAGCC+GGG | 0.542966 | 4_1:+75426910 | Msa0572530:CDS |
| AAAAGAATATATGAGGATGC+AGG | 0.545861 | 4_1:-75428824 | None:intergenic |
| CATAACATGTATGCTGAAGA+AGG | 0.546592 | 4_1:-75427468 | None:intergenic |
| AGATGAGATCTTGAAGCAGA+AGG | 0.547904 | 4_1:+75427112 | Msa0572530:CDS |
| TGGCAAAGCATCTGAAGCAA+TGG | 0.552222 | 4_1:+75429184 | Msa0572530:CDS |
| GTGAGGAAGATAAACAATTG+TGG | 0.559951 | 4_1:+75429159 | Msa0572530:CDS |
| AGCTATCCTTGCAGACAACA+AGG | 0.563397 | 4_1:+75427976 | Msa0572530:CDS |
| ACAAGAGAAGAAGCCTTATG+AGG | 0.567318 | 4_1:+75427709 | Msa0572530:CDS |
| GAAGATAAACAATTGTGGAA+TGG | 0.568238 | 4_1:+75429164 | Msa0572530:CDS |
| GTTAGCATCATTGGTTGATG+GGG | 0.568298 | 4_1:-75426898 | None:intergenic |
| AAAGAAACAACAAAAGCCAA+AGG | 0.574463 | 4_1:+75426995 | Msa0572530:CDS |
| ACAGAAGCAGAAGACTGCTA+TGG | 0.587399 | 4_1:+75427820 | Msa0572530:CDS |
| ATCCCCACAAAGAAATCAAG+AGG | 0.589439 | 4_1:+75426849 | Msa0572530:CDS |
| GAAATCAAGAGGAAGCAGAA+AGG | 0.590805 | 4_1:+75426860 | Msa0572530:CDS |
| CCAAGATCACATCTGAAGAG+TGG | 0.592813 | 4_1:+75428427 | Msa0572530:CDS |
| GGAGGCTGCAAATCTTATGA+AGG | 0.596196 | 4_1:+75428643 | Msa0572530:CDS |
| AGCAATGGATGCATACAAGA+AGG | 0.597525 | 4_1:+75429199 | Msa0572530:CDS |
| ACAAAAGAGGCCTTATGAAG+AGG | 0.601467 | 4_1:+75428467 | Msa0572530:CDS |
| AGACAACAAGGGTGTCTTGG+AGG | 0.604107 | 4_1:+75427988 | Msa0572530:CDS |
| AGACACCCTTGTTGTCTGCA+AGG | 0.607168 | 4_1:-75427982 | None:intergenic |
| TGCATACAAGAAGGAAATGG+AGG | 0.608817 | 4_1:+75429208 | Msa0572530:CDS |
| ATGAACTAGCTAACCATGGT+GGG | 0.609531 | 4_1:-75427197 | None:intergenic |
| AATCTTTCTAACCCTAAGAA+GGG | 0.611188 | 4_1:+75426960 | Msa0572530:CDS |
| TAGAAAGATTCTCAGAAATG+GGG | 0.613698 | 4_1:-75426947 | None:intergenic |
| TTCCATGCAGCAAAGAAGCA+AGG | 0.615026 | 4_1:+75428934 | Msa0572530:intron |
| GAAAGAATTCAAACCCACCA+TGG | 0.617162 | 4_1:+75427184 | Msa0572530:CDS |
| ACTTGTTTCAATGAAGTGGA+AGG | 0.625574 | 4_1:+75429007 | Msa0572530:CDS |
| CAAACTGAAGAAAGATGAGG+AGG | 0.628380 | 4_1:+75428625 | Msa0572530:CDS |
| AGAAAGATTCTCAGAAATGG+GGG | 0.633471 | 4_1:-75426946 | None:intergenic |
| TTATTTGCAAGTAATTACAA+AGG | 0.633815 | 4_1:+75427757 | Msa0572530:CDS |
| TTACAAACTGAAGAAAGATG+AGG | 0.634789 | 4_1:+75428622 | Msa0572530:CDS |
| GCAATATGCTCAAGAAATGG+AGG | 0.638772 | 4_1:+75428598 | Msa0572530:CDS |
| GGGGATCTCGGCAACTACGT+CGG | 0.640463 | 4_1:-75426832 | None:intergenic |
| TGATGCTAACATCGTAGCCG+GGG | 0.646039 | 4_1:+75426911 | Msa0572530:CDS |
| AGCAAGGAAGAGTATACTGG+AGG | 0.646246 | 4_1:+75428950 | Msa0572530:CDS |
| GATGAAGAACTCGAGAATCG+TGG | 0.649671 | 4_1:+75427134 | Msa0572530:CDS |
| ATTTATATAGGATATGAGTG+AGG | 0.652499 | 4_1:+75429142 | Msa0572530:intron |
| GGTCAAAGATCAATGGCATG+AGG | 0.662193 | 4_1:+75427491 | Msa0572530:CDS |
| GGTTAAGAAGGAAAATCCAG+AGG | 0.669344 | 4_1:+75427631 | Msa0572530:intron |
| AATGAACTAGCTAACCATGG+TGG | 0.676281 | 4_1:-75427198 | None:intergenic |
| AGAACTCGAGAATCGTGGCA+AGG | 0.678863 | 4_1:+75427139 | Msa0572530:CDS |
| GCTATCCTTGCAGACAACAA+GGG | 0.682627 | 4_1:+75427977 | Msa0572530:CDS |
| TGCTAACATCGTAGCCGGGG+AGG | 0.682629 | 4_1:+75426914 | Msa0572530:CDS |
| GTTCAATACAGATTTGAACA+TGG | 0.686572 | 4_1:-75429293 | None:intergenic |
| TCAGAAGAAGAAACATAACA+AGG | 0.711427 | 4_1:+75428766 | Msa0572530:CDS |
| TTAGATGGCAAAGAAGAACA+GGG | 0.732826 | 4_1:+75428574 | Msa0572530:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATCATTTTTTTTAATTTTT+AGG | + | chr4_1:75427279-75427298 | Msa0572530:intron | 10.0% |
| !!! | AAGTTATTTTAATAAATTCT+CGG | + | chr4_1:75428226-75428245 | Msa0572530:intron | 10.0% |
| !! | TAATTAATCCAATAAGATAA+TGG | - | chr4_1:75427239-75427258 | None:intergenic | 15.0% |
| !!! | TTTTTTAATTTTTAGGGTTT+AGG | + | chr4_1:75427286-75427305 | Msa0572530:intron | 15.0% |
| !!! | TTTTTAATTTTTAGGGTTTA+GGG | + | chr4_1:75427287-75427306 | Msa0572530:intron | 15.0% |
| !! | TGAATAAAATTTACTTAATG+TGG | + | chr4_1:75428381-75428400 | Msa0572530:intron | 15.0% |
| !! | GAATAAAATTTACTTAATGT+GGG | + | chr4_1:75428382-75428401 | Msa0572530:intron | 15.0% |
| !! | AATAAAATTTACTTAATGTG+GGG | + | chr4_1:75428383-75428402 | Msa0572530:intron | 15.0% |
| !! | AAAATATTAATGAAAACCAA+TGG | - | chr4_1:75428508-75428527 | None:intergenic | 15.0% |
| !! | ACTTTATTATATATTGATGT+GGG | + | chr4_1:75429111-75429130 | Msa0572530:intron | 15.0% |
| !! | CATATCCTATATAAATAAAT+GGG | - | chr4_1:75429138-75429157 | None:intergenic | 15.0% |
| !! | TCATATCCTATATAAATAAA+TGG | - | chr4_1:75429139-75429158 | None:intergenic | 15.0% |
| !! | AATTCAGATATGTATTGAAA+TGG | - | chr4_1:75426775-75426794 | None:intergenic | 20.0% |
| !! | CATATTTACCATTATCTTAT+TGG | + | chr4_1:75427228-75427247 | Msa0572530:intron | 20.0% |
| !! | AGACATTAAATGAATATTAC+AGG | - | chr4_1:75427330-75427349 | None:intergenic | 20.0% |
| !! | TTATTTGCAAGTAATTACAA+AGG | + | chr4_1:75427757-75427776 | Msa0572530:CDS | 20.0% |
| !! | GTAAGCTATTATTATAGAAA+GGG | + | chr4_1:75428089-75428108 | Msa0572530:intron | 20.0% |
| !!! | GTTGTTTTTATAAGCAATAA+TGG | + | chr4_1:75428151-75428170 | Msa0572530:intron | 20.0% |
| !! | ATAAAATTTACTTAATGTGG+GGG | + | chr4_1:75428384-75428403 | Msa0572530:intron | 20.0% |
| !! | CACTTTATTATATATTGATG+TGG | + | chr4_1:75429110-75429129 | Msa0572530:intron | 20.0% |
| !! | CAAAGTCAATTATTATTCAT+TGG | - | chr4_1:75429273-75429292 | None:intergenic | 20.0% |
| !!! | GTAATAATTTCTTTTCTTGA+AGG | + | chr4_1:75429369-75429388 | Msa0572530:three_prime_UTR | 20.0% |
| ! | TTAGAAAGATTCTCAGAAAT+GGG | - | chr4_1:75426951-75426970 | None:intergenic | 25.0% |
| ! | AAGAAGGAAAAGAAAAAGAA+TGG | + | chr4_1:75427426-75427445 | Msa0572530:CDS | 25.0% |
| ! | AGAAGGAAAAGAAAAAGAAT+GGG | + | chr4_1:75427427-75427446 | Msa0572530:CDS | 25.0% |
| ! | CATTATCCTAATAGTTAGAT+TGG | - | chr4_1:75427537-75427556 | None:intergenic | 25.0% |
| ! | ATTGTTGCAATGTGAATTTA+TGG | + | chr4_1:75427592-75427611 | Msa0572530:intron | 25.0% |
| !! | TAAGGACATTTCAAACATTT+TGG | + | chr4_1:75427661-75427680 | Msa0572530:CDS | 25.0% |
| !! | AAGGACATTTCAAACATTTT+GGG | + | chr4_1:75427662-75427681 | Msa0572530:CDS | 25.0% |
| ! | AGGTAATTGATCATATGATT+GGG | + | chr4_1:75428008-75428027 | Msa0572530:intron | 25.0% |
| ! | CGTAAGCTATTATTATAGAA+AGG | + | chr4_1:75428088-75428107 | Msa0572530:intron | 25.0% |
| !!! | TTTCAACTTATTTTCAGAAG+TGG | - | chr4_1:75428178-75428197 | None:intergenic | 25.0% |
| ! | TAAAATTTACTTAATGTGGG+GGG | + | chr4_1:75428385-75428404 | Msa0572530:intron | 25.0% |
| !! | CTTAATTTGAAACTGTTAGA+TGG | + | chr4_1:75428559-75428578 | Msa0572530:intron | 25.0% |
| ! | AAAAACTGAAAACATGATCA+AGG | + | chr4_1:75428727-75428746 | Msa0572530:CDS | 25.0% |
| ! | TTACCTGAAAAGAATATATG+AGG | - | chr4_1:75428834-75428853 | None:intergenic | 25.0% |
| ! | ATTTATATAGGATATGAGTG+AGG | + | chr4_1:75429142-75429161 | Msa0572530:intron | 25.0% |
| ! | TTTCTTGAAGGAATAACAAT+TGG | + | chr4_1:75429381-75429400 | Msa0572530:three_prime_UTR | 25.0% |
| !! | TTTCTCTCTCGTTTTAACAA+TGG | + | chr4_1:75426809-75426828 | Msa0572530:exon | 30.0% |
| TAGAAAGATTCTCAGAAATG+GGG | - | chr4_1:75426950-75426969 | None:intergenic | 30.0% | |
| GTTAGAAAGATTCTCAGAAA+TGG | - | chr4_1:75426952-75426971 | None:intergenic | 30.0% | |
| AATCTTTCTAACCCTAAGAA+GGG | + | chr4_1:75426960-75426979 | Msa0572530:CDS | 30.0% | |
| AAAGAAACAACAAAAGCCAA+AGG | + | chr4_1:75426995-75427014 | Msa0572530:CDS | 30.0% | |
| ! | TTTAGGGTTTGTGTTGAAAT+TGG | + | chr4_1:75427303-75427322 | Msa0572530:intron | 30.0% |
| ! | CATTGTACAGAATTTTCCTA+TGG | + | chr4_1:75427383-75427402 | Msa0572530:intron | 30.0% |
| ! | TTTTCCTATGGTGAAAGATA+AGG | + | chr4_1:75427395-75427414 | Msa0572530:CDS | 30.0% |
| AGATAAGGAACAAGAAAAGA+AGG | + | chr4_1:75427410-75427429 | Msa0572530:CDS | 30.0% | |
| TTCTTCAGCATACATGTTAT+GGG | + | chr4_1:75427470-75427489 | Msa0572530:CDS | 30.0% | |
| AGCAATCCAATCTAACTATT+AGG | + | chr4_1:75427528-75427547 | Msa0572530:intron | 30.0% | |
| ! | AGGACATTTCAAACATTTTG+GGG | + | chr4_1:75427663-75427682 | Msa0572530:CDS | 30.0% |
| AAAGGAAAAACGTGAAATTG+AGG | + | chr4_1:75427775-75427794 | Msa0572530:CDS | 30.0% | |
| CTCTTCTATCATTAGTAAAC+AGG | - | chr4_1:75427955-75427974 | None:intergenic | 30.0% | |
| GAGGTAATTGATCATATGAT+TGG | + | chr4_1:75428007-75428026 | Msa0572530:intron | 30.0% | |
| GAAAGAGTCTCACAAAATAA+TGG | + | chr4_1:75428248-75428267 | Msa0572530:intron | 30.0% | |
| CATAATTGTACCTCTTCATA+AGG | - | chr4_1:75428480-75428499 | None:intergenic | 30.0% | |
| GTACAATTATGCAAAACCAT+TGG | + | chr4_1:75428489-75428508 | Msa0572530:intron | 30.0% | |
| TTACAAACTGAAGAAAGATG+AGG | + | chr4_1:75428622-75428641 | Msa0572530:CDS | 30.0% | |
| TCAGAAGAAGAAACATAACA+AGG | + | chr4_1:75428766-75428785 | Msa0572530:CDS | 30.0% | |
| AAAAGAATTCTGATCCAAAC+AGG | + | chr4_1:75428792-75428811 | Msa0572530:CDS | 30.0% | |
| AAAAGAATATATGAGGATGC+AGG | - | chr4_1:75428827-75428846 | None:intergenic | 30.0% | |
| ! | CATCCTCATATATTCTTTTC+AGG | + | chr4_1:75428828-75428847 | Msa0572530:CDS | 30.0% |
| TGGGTCCCATTTATTTATAT+AGG | + | chr4_1:75429130-75429149 | Msa0572530:intron | 30.0% | |
| GAAGATAAACAATTGTGGAA+TGG | + | chr4_1:75429164-75429183 | Msa0572530:CDS | 30.0% | |
| CAACAAATCAATTGTTGCAA+AGG | + | chr4_1:75429235-75429254 | Msa0572530:CDS | 30.0% | |
| GTTCAATACAGATTTGAACA+TGG | - | chr4_1:75429296-75429315 | None:intergenic | 30.0% | |
| GTATTGAACACATGATTGAT+TGG | + | chr4_1:75429307-75429326 | Msa0572530:three_prime_UTR | 30.0% | |
| TTCCTCTTGATTTCTTTGTG+GGG | - | chr4_1:75426854-75426873 | None:intergenic | 35.0% | |
| CTTCCTCTTGATTTCTTTGT+GGG | - | chr4_1:75426855-75426874 | None:intergenic | 35.0% | |
| ! | TGTTAGCATCATTGGTTGAT+GGG | - | chr4_1:75426902-75426921 | None:intergenic | 35.0% |
| ! | ATGTTAGCATCATTGGTTGA+TGG | - | chr4_1:75426903-75426922 | None:intergenic | 35.0% |
| AGAAAGATTCTCAGAAATGG+GGG | - | chr4_1:75426949-75426968 | None:intergenic | 35.0% | |
| GAATCTTTCTAACCCTAAGA+AGG | + | chr4_1:75426959-75426978 | Msa0572530:CDS | 35.0% | |
| TGAAATGAACTAGCTAACCA+TGG | - | chr4_1:75427204-75427223 | None:intergenic | 35.0% | |
| TGTTCCTTATCTTTCACCAT+AGG | - | chr4_1:75427402-75427421 | None:intergenic | 35.0% | |
| CATAACATGTATGCTGAAGA+AGG | - | chr4_1:75427471-75427490 | None:intergenic | 35.0% | |
| CTTCTTCAGCATACATGTTA+TGG | + | chr4_1:75427469-75427488 | Msa0572530:CDS | 35.0% | |
| TGTTATGGGTCAAAGATCAA+TGG | + | chr4_1:75427484-75427503 | Msa0572530:CDS | 35.0% | |
| ! | TATGGATTGATGATTGATGC+AGG | + | chr4_1:75427610-75427629 | Msa0572530:intron | 35.0% |
| ATGATTGATGCAGGTTAAGA+AGG | + | chr4_1:75427619-75427638 | Msa0572530:intron | 35.0% | |
| AAATCCAGAGGCAGAATTTA+AGG | + | chr4_1:75427643-75427662 | Msa0572530:CDS | 35.0% | |
| !! | CAAACATTTTGGGGACTAAA+TGG | + | chr4_1:75427672-75427691 | Msa0572530:CDS | 35.0% |
| GAAATACCAAGCTGAAAAAG+AGG | + | chr4_1:75427733-75427752 | Msa0572530:CDS | 35.0% | |
| !!! | AATAAGCCTCTTTTTCAGCT+TGG | - | chr4_1:75427742-75427761 | None:intergenic | 35.0% |
| AATTGAGGCAATGAAACTCT+TGG | + | chr4_1:75427790-75427809 | Msa0572530:CDS | 35.0% | |
| CAAGAAGAACAAGAAAGAGA+AGG | + | chr4_1:75427892-75427911 | Msa0572530:CDS | 35.0% | |
| ! | ATAGGATGCTTTGGTTTCAA+TGG | - | chr4_1:75427920-75427939 | None:intergenic | 35.0% |
| AACAGGAAAAAAGCTGACAT+AGG | - | chr4_1:75427938-75427957 | None:intergenic | 35.0% | |
| ACATGACAGAAGAACAAAAG+AGG | + | chr4_1:75428454-75428473 | Msa0572530:CDS | 35.0% | |
| TTAGATGGCAAAGAAGAACA+GGG | + | chr4_1:75428574-75428593 | Msa0572530:intron | 35.0% | |
| TGCAAATCTTATGAAGGAAG+AGG | + | chr4_1:75428649-75428668 | Msa0572530:CDS | 35.0% | |
| ACACACTTGTTTCAATGAAG+TGG | + | chr4_1:75429003-75429022 | Msa0572530:CDS | 35.0% | |
| ACTTGTTTCAATGAAGTGGA+AGG | + | chr4_1:75429007-75429026 | Msa0572530:CDS | 35.0% | |
| GTGAGGAAGATAAACAATTG+TGG | + | chr4_1:75429159-75429178 | Msa0572530:CDS | 35.0% | |
| CAAATCAATTGTTGCAAAGG+TGG | + | chr4_1:75429238-75429257 | Msa0572530:CDS | 35.0% | |
| TGATTTCTTTGTGGGGATCT+CGG | - | chr4_1:75426847-75426866 | None:intergenic | 40.0% | |
| ATCCCCACAAAGAAATCAAG+AGG | + | chr4_1:75426849-75426868 | Msa0572530:CDS | 40.0% | |
| GCTTCCTCTTGATTTCTTTG+TGG | - | chr4_1:75426856-75426875 | None:intergenic | 40.0% | |
| GAAATCAAGAGGAAGCAGAA+AGG | + | chr4_1:75426860-75426879 | Msa0572530:CDS | 40.0% | |
| ! | GTTAGCATCATTGGTTGATG+GGG | - | chr4_1:75426901-75426920 | None:intergenic | 40.0% |
| AATGATGCTAACATCGTAGC+CGG | + | chr4_1:75426909-75426928 | Msa0572530:CDS | 40.0% | |
| ! | ATGCAGCTTTTCCCTTCTTA+GGG | - | chr4_1:75426974-75426993 | None:intergenic | 40.0% |
| CTGCTTCAAGATCTCATCTT+TGG | - | chr4_1:75427111-75427130 | None:intergenic | 40.0% | |
| AGATGAGATCTTGAAGCAGA+AGG | + | chr4_1:75427112-75427131 | Msa0572530:CDS | 40.0% | |
| GAAAGAATTCAAACCCACCA+TGG | + | chr4_1:75427184-75427203 | Msa0572530:CDS | 40.0% | |
| ATGAACTAGCTAACCATGGT+GGG | - | chr4_1:75427200-75427219 | None:intergenic | 40.0% | |
| AATGAACTAGCTAACCATGG+TGG | - | chr4_1:75427201-75427220 | None:intergenic | 40.0% | |
| ! | AAGAAGGCCTTTTCTTCTCA+GGG | - | chr4_1:75427455-75427474 | None:intergenic | 40.0% |
| GGTTAAGAAGGAAAATCCAG+AGG | + | chr4_1:75427631-75427650 | Msa0572530:intron | 40.0% | |
| ATGTCCTTAAATTCTGCCTC+TGG | - | chr4_1:75427650-75427669 | None:intergenic | 40.0% | |
| ! | ACAAGAGAAGAAGCCTTATG+AGG | + | chr4_1:75427709-75427728 | Msa0572530:CDS | 40.0% |
| GCTTGGTATTTCTCCTCATA+AGG | - | chr4_1:75427725-75427744 | None:intergenic | 40.0% | |
| AAAGCTGACATAGGATGCTT+TGG | - | chr4_1:75427929-75427948 | None:intergenic | 40.0% | |
| AATGGAGACATGCTTGTGTT+AGG | + | chr4_1:75428266-75428285 | Msa0572530:intron | 40.0% | |
| ! | ACAAAAGAGGCCTTATGAAG+AGG | + | chr4_1:75428467-75428486 | Msa0572530:CDS | 40.0% |
| GTTAGATGGCAAAGAAGAAC+AGG | + | chr4_1:75428573-75428592 | Msa0572530:intron | 40.0% | |
| GGAGCAATATGCTCAAGAAA+TGG | + | chr4_1:75428595-75428614 | Msa0572530:CDS | 40.0% | |
| GCAATATGCTCAAGAAATGG+AGG | + | chr4_1:75428598-75428617 | Msa0572530:CDS | 40.0% | |
| CAAACTGAAGAAAGATGAGG+AGG | + | chr4_1:75428625-75428644 | Msa0572530:CDS | 40.0% | |
| CTTCTTCTTGAGCAATTGCA+AGG | - | chr4_1:75428705-75428724 | None:intergenic | 40.0% | |
| CTTGCAATTGCTCAAGAAGA+AGG | + | chr4_1:75428703-75428722 | Msa0572530:CDS | 40.0% | |
| ! | TATGAGGATGCAGGTCTTTT+AGG | - | chr4_1:75428818-75428837 | None:intergenic | 40.0% |
| ! | AGAAGCAAGGAAGAGTATAC+TGG | + | chr4_1:75428947-75428966 | Msa0572530:CDS | 40.0% |
| AGCAATGGATGCATACAAGA+AGG | + | chr4_1:75429199-75429218 | Msa0572530:CDS | 40.0% | |
| GGATGCATACAAGAAGGAAA+TGG | + | chr4_1:75429205-75429224 | Msa0572530:CDS | 40.0% | |
| TGCATACAAGAAGGAAATGG+AGG | + | chr4_1:75429208-75429227 | Msa0572530:CDS | 40.0% | |
| AGGAAGCAGAAAGGCTCTTA+AGG | + | chr4_1:75426869-75426888 | Msa0572530:CDS | 45.0% | |
| GGCTACGATGTTAGCATCAT+TGG | - | chr4_1:75426910-75426929 | None:intergenic | 45.0% | |
| ATGATGCTAACATCGTAGCC+GGG | + | chr4_1:75426910-75426929 | Msa0572530:CDS | 45.0% | |
| ! | GATGCAGCTTTTCCCTTCTT+AGG | - | chr4_1:75426975-75426994 | None:intergenic | 45.0% |
| TGCTCGAAAGATCGTTCCTT+TGG | - | chr4_1:75427014-75427033 | None:intergenic | 45.0% | |
| CTTCAGTCTTCTCTTTCTCG+AGG | - | chr4_1:75427076-75427095 | None:intergenic | 45.0% | |
| GATGAAGAACTCGAGAATCG+TGG | + | chr4_1:75427134-75427153 | Msa0572530:CDS | 45.0% | |
| ! | GAAGAAGGCCTTTTCTTCTC+AGG | - | chr4_1:75427456-75427475 | None:intergenic | 45.0% |
| GGTCAAAGATCAATGGCATG+AGG | + | chr4_1:75427491-75427510 | Msa0572530:CDS | 45.0% | |
| GGCAATGAAACTCTTGGAAG+TGG | + | chr4_1:75427796-75427815 | Msa0572530:CDS | 45.0% | |
| ACAGAAGCAGAAGACTGCTA+TGG | + | chr4_1:75427820-75427839 | Msa0572530:CDS | 45.0% | |
| AGCTATCCTTGCAGACAACA+AGG | + | chr4_1:75427976-75427995 | Msa0572530:CDS | 45.0% | |
| GCTATCCTTGCAGACAACAA+GGG | + | chr4_1:75427977-75427996 | Msa0572530:CDS | 45.0% | |
| TGCTTGTGTTAGGTGGAATG+CGG | + | chr4_1:75428276-75428295 | Msa0572530:intron | 45.0% | |
| TCTTGAACCTGGATCGTGTT+CGG | + | chr4_1:75428333-75428352 | Msa0572530:intron | 45.0% | |
| CCACTCTTCAGATGTGATCT+TGG | - | chr4_1:75428430-75428449 | None:intergenic | 45.0% | |
| CCAAGATCACATCTGAAGAG+TGG | + | chr4_1:75428427-75428446 | Msa0572530:CDS | 45.0% | |
| GGAGGCTGCAAATCTTATGA+AGG | + | chr4_1:75428643-75428662 | Msa0572530:CDS | 45.0% | |
| TTCCATGCAGCAAAGAAGCA+AGG | + | chr4_1:75428934-75428953 | Msa0572530:intron | 45.0% | |
| TTCCTTGCTTCTTTGCTGCA+TGG | - | chr4_1:75428939-75428958 | None:intergenic | 45.0% | |
| ! | AGCAAGGAAGAGTATACTGG+AGG | + | chr4_1:75428950-75428969 | Msa0572530:CDS | 45.0% |
| ! | TGGCAAAGCATCTGAAGCAA+TGG | + | chr4_1:75429184-75429203 | Msa0572530:CDS | 45.0% |
| !!! | ATCATTTTTTTTAATTTTTA+GGG | + | chr4_1:75427280-75427299 | Msa0572530:intron | 5.0% |
| TGATGCTAACATCGTAGCCG+GGG | + | chr4_1:75426911-75426930 | Msa0572530:CDS | 50.0% | |
| ! | GCAAGATTTGCTCGAGATGC+AGG | + | chr4_1:75427031-75427050 | Msa0572530:CDS | 50.0% |
| GCTCGAGATGCAGGAAAAGA+TGG | + | chr4_1:75427040-75427059 | Msa0572530:CDS | 50.0% | |
| AGAACTCGAGAATCGTGGCA+AGG | + | chr4_1:75427139-75427158 | Msa0572530:CDS | 50.0% | |
| ATGGGTGCCCTGAGAAGAAA+AGG | + | chr4_1:75427445-75427464 | Msa0572530:CDS | 50.0% | |
| ! | AGACACCCTTGTTGTCTGCA+AGG | - | chr4_1:75427985-75428004 | None:intergenic | 50.0% |
| !! | TGCAGACAACAAGGGTGTCT+TGG | + | chr4_1:75427985-75428004 | Msa0572530:CDS | 50.0% |
| !! | AGACAACAAGGGTGTCTTGG+AGG | + | chr4_1:75427988-75428007 | Msa0572530:CDS | 50.0% |
| GGAGACATGCTTGTGTTAGG+TGG | + | chr4_1:75428269-75428288 | Msa0572530:intron | 50.0% | |
| GGAATGCGGATTCCTTGCTA+TGG | + | chr4_1:75428290-75428309 | Msa0572530:intron | 50.0% | |
| ! | ATGCGGATTCCTTGCTATGG+AGG | + | chr4_1:75428293-75428312 | Msa0572530:intron | 50.0% |
| GTTCAAGAACGCGTGAATGC+GGG | - | chr4_1:75428321-75428340 | None:intergenic | 50.0% | |
| GGTTCAAGAACGCGTGAATG+CGG | - | chr4_1:75428322-75428341 | None:intergenic | 50.0% | |
| CATTCACGCGTTCTTGAACC+TGG | + | chr4_1:75428322-75428341 | Msa0572530:intron | 50.0% | |
| ! | GCAGGTCTTTTAGGCCTGTT+TGG | - | chr4_1:75428809-75428828 | None:intergenic | 50.0% |
| AGTATACTGGAGGAACGTCC+AGG | + | chr4_1:75428960-75428979 | Msa0572530:CDS | 50.0% | |
| AGCATGTTTCCTCCAACTCC+TGG | - | chr4_1:75428981-75429000 | None:intergenic | 50.0% | |
| ATGCGGGTTCCTCCATAGCA+AGG | - | chr4_1:75428305-75428324 | None:intergenic | 55.0% | |
| CTTGACACCGAACACGATCC+AGG | - | chr4_1:75428343-75428362 | None:intergenic | 55.0% | |
| TGGGGGGTGATGTGCAATTC+AGG | + | chr4_1:75428401-75428420 | Msa0572530:intron | 55.0% | |
| GGGGATCTCGGCAACTACGT+CGG | - | chr4_1:75426835-75426854 | None:intergenic | 60.0% | |
| TGCTAACATCGTAGCCGGGG+AGG | + | chr4_1:75426914-75426933 | Msa0572530:CDS | 60.0% | |
| CTGGAGGAACGTCCAGGAGT+TGG | + | chr4_1:75428966-75428985 | Msa0572530:CDS | 60.0% | |
| GAGGAACGTCCAGGAGTTGG+AGG | + | chr4_1:75428969-75428988 | Msa0572530:CDS | 60.0% | |
| GGGGGAGACAGCTGCCTCCC+CGG | - | chr4_1:75426931-75426950 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 75426769 | 75429424 | 75426769 | ID=Msa0572530;Name=Msa0572530 |
| chr4_1 | mRNA | 75426769 | 75429424 | 75426769 | ID=Msa0572530-mRNA-1;Parent=Msa0572530;Name=Msa0572530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=59|1|1|1|1|1|7|144|475 |
| chr4_1 | exon | 75426769 | 75427205 | 75426769 | ID=Msa0572530-mRNA-1:exon:26117;Parent=Msa0572530-mRNA-1 |
| chr4_1 | exon | 75427393 | 75427512 | 75427393 | ID=Msa0572530-mRNA-1:exon:26118;Parent=Msa0572530-mRNA-1 |
| chr4_1 | exon | 75427632 | 75428009 | 75427632 | ID=Msa0572530-mRNA-1:exon:26119;Parent=Msa0572530-mRNA-1 |
| chr4_1 | exon | 75428423 | 75428488 | 75428423 | ID=Msa0572530-mRNA-1:exon:26120;Parent=Msa0572530-mRNA-1 |
| chr4_1 | exon | 75428578 | 75428849 | 75428578 | ID=Msa0572530-mRNA-1:exon:26121;Parent=Msa0572530-mRNA-1 |
| chr4_1 | exon | 75428944 | 75429028 | 75428944 | ID=Msa0572530-mRNA-1:exon:26122;Parent=Msa0572530-mRNA-1 |
| chr4_1 | exon | 75429152 | 75429424 | 75429152 | ID=Msa0572530-mRNA-1:exon:26123;Parent=Msa0572530-mRNA-1 |
| chr4_1 | five_prime_UTR | 75426769 | 75426827 | 75426769 | ID=Msa0572530-mRNA-1:five_prime_utr;Parent=Msa0572530-mRNA-1 |
| chr4_1 | CDS | 75426828 | 75427205 | 75426828 | ID=Msa0572530-mRNA-1:cds;Parent=Msa0572530-mRNA-1 |
| chr4_1 | CDS | 75427393 | 75427512 | 75427393 | ID=Msa0572530-mRNA-1:cds;Parent=Msa0572530-mRNA-1 |
| chr4_1 | CDS | 75427632 | 75428009 | 75427632 | ID=Msa0572530-mRNA-1:cds;Parent=Msa0572530-mRNA-1 |
| chr4_1 | CDS | 75428423 | 75428488 | 75428423 | ID=Msa0572530-mRNA-1:cds;Parent=Msa0572530-mRNA-1 |
| chr4_1 | CDS | 75428578 | 75428849 | 75428578 | ID=Msa0572530-mRNA-1:cds;Parent=Msa0572530-mRNA-1 |
| chr4_1 | CDS | 75428944 | 75429028 | 75428944 | ID=Msa0572530-mRNA-1:cds;Parent=Msa0572530-mRNA-1 |
| chr4_1 | CDS | 75429152 | 75429280 | 75429152 | ID=Msa0572530-mRNA-1:cds;Parent=Msa0572530-mRNA-1 |
| chr4_1 | three_prime_UTR | 75429281 | 75429424 | 75429281 | ID=Msa0572530-mRNA-1:three_prime_utr;Parent=Msa0572530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
