AlfalfaGEDB | Msa0524520

M. sativa cultivar zhongmu-4 / Msa0524520

KEGG: K06627
GO: GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123
PFAM: PF00134.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524520	XP_024635368.1	83.427	356	19	2	1	319	126	478	0.0	595

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524520	sp\|Q147G5\|CCA22_ARATH	66.795	259	82	2	58	315	179	434	7.03e-120	354

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524520	G7JBQ1	83.427	356	19	2	1	319	126	478	0.0	595

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015570	Msa0524520	0.814038	1.888078e-51	-8.615850e-47
Msa0016040	Msa0524520	0.845655	3.547781e-59	-8.615850e-47
Msa0016530	Msa0524520	0.843153	1.669464e-58	-8.615850e-47
Msa0019930	Msa0524520	0.841451	4.714121e-58	-8.615850e-47
Msa0020540	Msa0524520	0.836343	9.894320e-57	-8.615850e-47
Msa0025160	Msa0524520	0.821614	3.675875e-53	-8.615850e-47
Msa0025580	Msa0524520	0.839376	1.644737e-57	-8.615850e-47
Msa0027280	Msa0524520	0.861108	1.293022e-63	-8.615850e-47
Msa0030070	Msa0524520	0.829582	4.750231e-55	-8.615850e-47
Msa0030690	Msa0524520	0.839772	1.297435e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524520	MtrunA17_Chr3g0138431	83.427	356	19	2	1	319	126	478	0.0	595
Msa0524520	MtrunA17_Chr1g0148681	61.491	322	72	4	33	315	109	417	3.44e-135	390
Msa0524520	MtrunA17_Chr2g0332171	62.891	256	89	4	63	315	233	485	2.51e-104	313
Msa0524520	MtrunA17_Chr2g0332181	59.600	250	98	1	58	307	174	420	2.98e-101	304
Msa0524520	MtrunA17_Chr3g0125051	54.297	256	108	4	65	316	254	504	2.75e-89	275
Msa0524520	MtrunA17_Chr1g0152871	54.217	249	112	2	66	314	108	354	9.14e-88	267
Msa0524520	MtrunA17_Chr3g0125041	52.479	242	110	2	66	305	258	496	3.61e-87	270
Msa0524520	MtrunA17_Chr3g0134421	48.594	249	119	2	65	310	100	342	3.14e-76	237
Msa0524520	MtrunA17_Chr3g0134401	46.341	246	129	1	65	310	88	330	2.13e-73	229
Msa0524520	MtrunA17_Chr3g0134441	50.607	247	117	2	65	310	80	322	3.11e-72	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524520	AT5G11300.1	66.795	259	82	2	58	315	179	434	7.14e-121	354
Msa0524520	AT5G25380.3	66.016	256	79	3	63	315	185	435	8.26e-117	344
Msa0524520	AT5G25380.1	66.016	256	79	3	63	315	185	435	8.26e-117	344
Msa0524520	AT5G25380.4	66.016	256	79	3	63	315	191	441	1.08e-116	344
Msa0524520	AT5G25380.2	66.946	239	72	2	63	299	185	418	1.81e-112	332
Msa0524520	AT1G15570.1	59.176	267	101	3	52	315	189	450	4.55e-109	325
Msa0524520	AT1G80370.1	59.615	260	94	2	52	307	198	450	3.31e-108	323
Msa0524520	AT1G44110.1	56.017	241	103	1	65	305	208	445	5.95e-96	291
Msa0524520	AT5G11300.2	67.000	200	63	1	58	257	179	375	1.96e-92	281
Msa0524520	AT5G43080.2	52.419	248	110	1	63	310	99	338	5.69e-89	270

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Find 100 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTTGTTCTTGCAC+TGG	0.503437	3_4:+77969009	Msa0524520:CDS
AAACACAGGCTCCAGTTGCT+TGG	0.536048	3_4:+77967711	Msa0524520:CDS
AACAGTGACTGCACCGGTTT+TGG	0.269524	3_4:-77969764	None:intergenic
AACAGTGAGTTGAAGTACTG+AGG	0.651840	3_4:+77969997	Msa0524520:three_prime_UTR
AACATGGTCACTTACGTTGT+TGG	0.427982	3_4:-77966482	None:intergenic
AACCAAAGTTACTGCAGCAA+TGG	0.556672	3_4:-77966434	None:intergenic
AAGACCATCAACCAATTACA+TGG	0.561852	3_4:+77967259	Msa0524520:CDS
AAGAGCAACAGCTTCCAAAA+AGG	0.433513	3_4:+77965412	Msa0524520:five_prime_UTR
AAGCAAAATTCTTCCACTCG+AGG	0.634099	3_4:-77968136	None:intergenic
AATAAACCTTTGTTTGGACT+TGG	0.425078	3_4:-77966565	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTAACACGTTTATCATG+TGG	-	chr3_4:77965536-77965555	None:intergenic	30.0%
TGGGATTTATACCTGAAAAT+TGG	-	chr3_4:77965561-77965580	None:intergenic	30.0%
AGGTCTTCTTCCTAATTATA+TGG	-	chr3_4:77965624-77965643	None:intergenic	30.0%
GATTGATCTATCTAGGTAAT+TGG	+	chr3_4:77965820-77965839	Msa0524520:intron	30.0%
AATAGATTTGCCTTCAAAGT+TGG	+	chr3_4:77965913-77965932	Msa0524520:intron	30.0%
ATAGATTTGCCTTCAAAGTT+GGG	+	chr3_4:77965914-77965933	Msa0524520:intron	30.0%
AAGATTGTCCAATAGTTAAG+AGG	+	chr3_4:77966129-77966148	Msa0524520:intron	30.0%
AGAATTGTCTACCATAAAGA+TGG	+	chr3_4:77966396-77966415	Msa0524520:exon	30.0%
TGACATTGCAATTTAGCATA+TGG	-	chr3_4:77966646-77966665	None:intergenic	30.0%
GGTGAAATATCTTAGAAGTT+TGG	+	chr3_4:77966728-77966747	Msa0524520:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	77965049	77970091	77965049	ID=Msa0524520;Name=Msa0524520
chr3_4	mRNA	77965049	77970091	77965049	ID=Msa0524520-mRNA-1;Parent=Msa0524520;Name=Msa0524520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=636\|0.75\|0.77\|1\|0.87\|1\|9\|289\|319
chr3_4	exon	77965049	77965568	77965049	ID=Msa0524520-mRNA-1:exon:22951;Parent=Msa0524520-mRNA-1
chr3_4	exon	77966299	77966580	77966299	ID=Msa0524520-mRNA-1:exon:22952;Parent=Msa0524520-mRNA-1
chr3_4	exon	77966793	77966815	77966793	ID=Msa0524520-mRNA-1:exon:22953;Parent=Msa0524520-mRNA-1
chr3_4	exon	77967251	77967343	77967251	ID=Msa0524520-mRNA-1:exon:22954;Parent=Msa0524520-mRNA-1
chr3_4	exon	77967624	77967757	77967624	ID=Msa0524520-mRNA-1:exon:22955;Parent=Msa0524520-mRNA-1
chr3_4	exon	77968114	77968266	77968114	ID=Msa0524520-mRNA-1:exon:22956;Parent=Msa0524520-mRNA-1
chr3_4	exon	77968686	77968878	77968686	ID=Msa0524520-mRNA-1:exon:22957;Parent=Msa0524520-mRNA-1
chr3_4	exon	77968965	77969099	77968965	ID=Msa0524520-mRNA-1:exon:22958;Parent=Msa0524520-mRNA-1
chr3_4	exon	77969740	77970091	77969740	ID=Msa0524520-mRNA-1:exon:22959;Parent=Msa0524520-mRNA-1
chr3_4	five_prime_UTR	77965049	77965568	77965049	ID=Msa0524520-mRNA-1:five_prime_utr;Parent=Msa0524520-mRNA-1
chr3_4	five_prime_UTR	77966299	77966414	77966299	ID=Msa0524520-mRNA-1:five_prime_utr;Parent=Msa0524520-mRNA-1
chr3_4	CDS	77966415	77966580	77966415	ID=Msa0524520-mRNA-1:cds;Parent=Msa0524520-mRNA-1
chr3_4	CDS	77966793	77966815	77966793	ID=Msa0524520-mRNA-1:cds;Parent=Msa0524520-mRNA-1
chr3_4	CDS	77967251	77967343	77967251	ID=Msa0524520-mRNA-1:cds;Parent=Msa0524520-mRNA-1
chr3_4	CDS	77967624	77967757	77967624	ID=Msa0524520-mRNA-1:cds;Parent=Msa0524520-mRNA-1
chr3_4	CDS	77968114	77968266	77968114	ID=Msa0524520-mRNA-1:cds;Parent=Msa0524520-mRNA-1
chr3_4	CDS	77968686	77968878	77968686	ID=Msa0524520-mRNA-1:cds;Parent=Msa0524520-mRNA-1
chr3_4	CDS	77968965	77969099	77968965	ID=Msa0524520-mRNA-1:cds;Parent=Msa0524520-mRNA-1
chr3_4	CDS	77969740	77969802	77969740	ID=Msa0524520-mRNA-1:cds;Parent=Msa0524520-mRNA-1
chr3_4	three_prime_UTR	77969803	77970091	77969803	ID=Msa0524520-mRNA-1:three_prime_utr;Parent=Msa0524520-mRNA-1

Gene Sequence

>Msa0524520

ATGGTAGAGTCAAAAGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACGTAAGTGACCATGTTATGACAGACACCACACTTTCAATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGTCCAAACAAAGACATAAATATGATTTGTGAGAAGCTTGAGAAAAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCAAAATATGAAGAGATGTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTAGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTCTCAGGAAAAATGCAACTCAATGCGTTAAACTTTATCTTGTTATACAGGTTCCTCTTGCTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCGCTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCATGGACTACAACTCTGGAGCATTTTACCAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGTTCAATGGTGTGGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA

Protein sequence

>Msa0524520

MVESKDTIAAVTLVDEPTEHCMSNNVSDHVMTDTTLSMQECVNSGELATSPSPNKDINMICEKLEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFLRKNATQCVKLYLVIQVPLAELEFLANYLAELALVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV*