AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371010 MtrunA17_Chr3g0116821 97.751 489 8 2 1 486 1 489 0.0 966
Msa0371010 MtrunA17_Chr7g0259481 61.075 465 157 7 26 485 3 448 1.88e-180 513
Msa0371010 MtrunA17_Chr2g0287231 69.643 224 56 2 87 308 14 227 1.81e-103 308
Msa0371010 MtrunA17_Chr2g0287241 54.444 180 75 2 308 485 30 204 3.30e-63 204
Msa0371010 MtrunA17_Chr3g0114371 44.939 247 94 7 244 485 63 272 1.35e-51 176
Msa0371010 MtrunA17_Chr6g0458111 30.787 445 245 16 85 484 3 429 5.67e-46 166
Msa0371010 MtrunA17_Chr6g0458091 30.787 445 245 16 85 484 3 429 5.67e-46 166
Msa0371010 MtrunA17_Chr1g0200071 30.112 445 248 16 85 484 3 429 9.69e-45 162
Msa0371010 MtrunA17_Chr1g0200091 30.112 445 248 16 85 484 3 429 9.69e-45 162
Msa0371010 MtrunA17_Chr1g0200121 29.888 445 249 16 85 484 3 429 1.46e-44 162
Msa0371010 MtrunA17_Chr4g0005781 29.663 445 250 16 85 484 3 429 2.37e-43 159
Msa0371010 MtrunA17_Chr8g0380091 29.663 445 248 16 89 486 275 701 7.93e-42 158
Msa0371010 MtrunA17_Chr1g0150331 29.587 436 239 14 85 484 3 406 1.69e-39 147
Msa0371010 MtrunA17_Chr1g0193591 30.222 450 235 19 85 481 3 426 7.13e-38 144
Msa0371010 MtrunA17_Chr1g0204031 30.512 449 236 22 85 484 3 424 1.57e-35 140
Msa0371010 MtrunA17_Chr1g0156421 28.442 443 252 15 85 481 3 426 3.19e-35 136
Msa0371010 MtrunA17_Chr8g0340771 26.906 446 265 14 84 484 2 431 1.18e-32 129
Msa0371010 MtrunA17_Chr6g0483121 27.009 448 258 13 86 484 88 515 1.62e-32 130
Msa0371010 MtrunA17_Chr8g0336511 30.000 330 185 11 79 379 67 379 2.70e-31 124
Msa0371010 MtrunA17_Chr8g0392641 26.966 445 262 13 86 484 143 570 8.52e-30 122
Msa0371010 MtrunA17_Chr5g0415391 26.933 401 239 13 114 481 9 388 1.32e-25 108
Msa0371010 MtrunA17_Chr2g0318291 31.720 186 103 3 87 248 7 192 3.85e-23 97.8
Msa0371010 MtrunA17_Chr1g0196251 26.166 386 218 14 86 444 5 350 6.68e-22 97.4
Msa0371010 MtrunA17_Chr4g0040791 30.830 253 161 7 91 340 59 300 8.87e-22 99.0
Msa0371010 MtrunA17_Chr1g0204041 32.026 153 82 3 84 214 2 154 4.00e-18 82.0
Msa0371010 MtrunA17_Chr1g0156411 33.557 149 76 3 79 205 2 149 4.41e-17 78.2
Msa0371010 MtrunA17_Chr2g0319341 26.801 347 200 15 169 481 1 327 2.53e-16 81.3
Msa0371010 MtrunA17_Chr8g0340371 26.357 258 133 10 84 304 2 239 9.65e-16 76.6
Msa0371010 MtrunA17_Chr2g0315521 26.690 281 151 9 86 332 29 288 3.21e-14 74.7
Msa0371010 MtrunA17_Chr2g0312061 26.855 283 148 11 86 332 29 288 6.14e-14 73.9
Msa0371010 MtrunA17_Chr1g0173551 24.845 322 220 8 80 393 73 380 2.03e-13 72.8
Msa0371010 MtrunA17_Chr4g0066951 34.518 197 107 8 84 269 10 195 1.31e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371010 AT4G20360.1 84.914 464 60 4 29 486 17 476 0.0 765
Msa0371010 AT4G20360.2 84.914 464 60 4 29 486 17 476 0.0 765
Msa0371010 AT4G02930.1 67.241 406 117 4 83 485 61 453 0.0 515
Msa0371010 AT1G07920.1 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT1G07940.4 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT1G07940.1 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT1G07940.2 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT1G07940.3 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT5G60390.3 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT5G60390.1 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT5G60390.2 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT1G07930.1 29.345 443 254 14 85 484 3 429 2.73e-44 162
Msa0371010 AT5G10630.4 29.452 438 258 14 89 486 315 741 3.10e-38 149
Msa0371010 AT5G10630.3 29.452 438 258 14 89 486 310 736 3.67e-38 148
Msa0371010 AT5G10630.1 29.478 441 254 15 89 486 239 665 4.18e-38 148
Msa0371010 AT5G10630.5 29.478 441 254 15 89 486 240 666 4.21e-38 148
Msa0371010 AT5G10630.2 29.478 441 254 15 89 486 240 666 4.21e-38 148
Msa0371010 AT1G18070.1 25.577 477 287 14 60 485 67 526 1.08e-31 128
Msa0371010 AT1G18070.2 25.577 477 287 14 60 485 67 526 1.08e-31 128
Msa0371010 AT1G07930.2 32.075 265 138 9 85 319 3 255 1.28e-30 122
Msa0371010 AT1G18070.3 25.205 488 286 15 60 485 67 537 5.02e-29 120
Msa0371010 AT2G31060.2 32.157 255 155 8 91 340 61 302 4.13e-21 97.1
Msa0371010 AT2G31060.3 32.046 259 154 9 91 340 61 306 3.03e-20 94.4
Msa0371010 AT2G18720.1 27.143 280 149 11 86 332 35 292 4.44e-16 80.9
Msa0371010 AT2G18720.2 27.143 280 149 11 86 332 35 292 4.44e-16 80.9
Msa0371010 AT5G13650.2 24.806 387 253 11 1 374 1 362 5.52e-16 81.3
Msa0371010 AT1G04170.2 27.046 281 150 10 86 332 30 289 1.60e-15 79.3
Msa0371010 AT1G04170.1 27.046 281 150 10 86 332 30 289 1.60e-15 79.3
Msa0371010 AT5G13650.1 24.620 329 214 8 62 374 51 361 1.97e-15 79.7
Msa0371010 AT4G18330.2 27.076 277 147 10 90 332 40 295 3.22e-15 78.2
Msa0371010 AT4G18330.1 29.843 191 105 7 90 254 40 227 9.35e-14 72.0
Msa0371010 AT5G39900.1 25.472 318 194 10 29 334 7 293 1.04e-12 70.9
Msa0371010 AT2G18720.3 27.368 190 108 5 152 332 33 201 1.06e-12 70.1

Find 180 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCATTGATGCAATTTA+AGG 0.087502 3_1:+68901432 None:intergenic
GATGACATTCCGATTGTTTC+TGG 0.182010 3_1:-68902414 Msa0371010:CDS
GGAAATGTTTCAGAAGATTT+TGG 0.183773 3_1:-68902103 Msa0371010:CDS
CATTCAACTCTATCTAATTA+AGG 0.190638 3_1:+68901376 None:intergenic
TTGTGTTATCCTCTCACTTT+TGG 0.213891 3_1:+68903555 None:intergenic
CACCTTTCTTTGCTGGTTAT+AGG 0.252585 3_1:-68901918 Msa0371010:CDS
TGTTTCTGGTTCAGCGCTAT+TGG 0.258255 3_1:-68902400 Msa0371010:CDS
GGATAAGATTTATAAACTTA+TGG 0.261517 3_1:-68902322 Msa0371010:CDS
ATCCTCAATAGCTAGCAAAA+AGG 0.263547 3_1:+68902251 None:intergenic
GAGGCGAGTTAGGGTTAGTT+TGG 0.273503 3_1:+68903266 None:intergenic
AGGAGGAAGAGAGGCGAGTT+AGG 0.275765 3_1:+68903256 None:intergenic
CGGATTGTCTTTAGTCGAAT+TGG 0.292281 3_1:-68901534 Msa0371010:three_prime_UTR
GCCTCATATGCGTGCTATAA+TGG 0.308463 3_1:-68901331 Msa0371010:three_prime_UTR
CGCTGCTCTCACCATGGCTT+TGG 0.310361 3_1:-68903067 Msa0371010:CDS
GGAGCGAGTGGTGGTTGGTT+TGG 0.311291 3_1:+68903194 None:intergenic
AGGGGTGAGGTGGAGGATTG+TGG 0.312038 3_1:+68903221 None:intergenic
ATTGGTGGAAGGGGAGGAAA+TGG 0.323140 3_1:+68903296 None:intergenic
TGGAGGAAGGGGTGAGGTGG+AGG 0.325736 3_1:+68903214 None:intergenic
AGCGAGAAGGATGTGTTCTT+TGG 0.340715 3_1:+68902807 None:intergenic
ACTTGTGGAGCTTGAAGTTC+GGG 0.340961 3_1:-68902466 Msa0371010:CDS
GAGTGAGGAGTGATAGTTCC+AGG 0.341582 3_1:+68901994 None:intergenic
GTTTGGAGGAAGGGGTGAGG+TGG 0.344028 3_1:+68903211 None:intergenic
AGACATTCACCTTTCTTTGC+TGG 0.352845 3_1:-68901925 Msa0371010:CDS
CTCTCGTCTTACGAATTTCC+TGG 0.356869 3_1:-68902438 Msa0371010:CDS
TGAAGGTGTGGGTGTGTGGT+GGG 0.357080 3_1:+68903331 None:intergenic
TTGGTTTGGAGGAAGGGGTG+AGG 0.361287 3_1:+68903208 None:intergenic
GGGCGGCACGGACGGTGAAA+GGG 0.362945 3_1:+68903169 None:intergenic
ACCGTTGGAGCTGGTGTTAT+CGG 0.367859 3_1:-68901718 Msa0371010:CDS
ATAGGGTTAAATTTAACTTT+CGG 0.368400 3_1:-68901554 Msa0371010:three_prime_UTR
GGAGGATTGTGGAGGGGTTG+AGG 0.370592 3_1:+68903232 None:intergenic
AACTTGTGGAGCTTGAAGTT+CGG 0.370653 3_1:-68902467 Msa0371010:CDS
TTATCACCACGTTTAATAGT+AGG 0.374526 3_1:+68902354 None:intergenic
GGGAGATCTGTTTGTCTTTG+AGG 0.374733 3_1:+68902273 None:intergenic
GGTTAGTTTGGGACGGAGAT+TGG 0.379136 3_1:+68903278 None:intergenic
GTGGTGGTTGGTTTGGAGGA+AGG 0.379395 3_1:+68903201 None:intergenic
TCTGTTTGTCTTTGAGGGAT+TGG 0.380993 3_1:+68902279 None:intergenic
TGGTGGTTGGTTTGGAGGAA+GGG 0.381462 3_1:+68903202 None:intergenic
GGAGATCTGTTTGTCTTTGA+GGG 0.382317 3_1:+68902274 None:intergenic
AGGCGAGTTAGGGTTAGTTT+GGG 0.389250 3_1:+68903267 None:intergenic
TATTCAAAGAGGGATGGTTT+TGG 0.389492 3_1:-68902022 Msa0371010:CDS
TGTTCTTTGGTTTGAGGCAT+AGG 0.393640 3_1:+68902820 None:intergenic
CGGGCGGCACGGACGGTGAA+AGG 0.394872 3_1:+68903168 None:intergenic
ATACCACGAGCACGTTCTTC+AGG 0.396105 3_1:+68902994 None:intergenic
ATTCAACTCTATCTAATTAA+GGG 0.403038 3_1:+68901377 None:intergenic
GTGAAGGTGTGGGTGTGTGG+TGG 0.407058 3_1:+68903330 None:intergenic
ACGGAGATTGGTGGAAGGGG+AGG 0.407272 3_1:+68903290 None:intergenic
GGAGGAAATGGAAGCGGAAG+TGG 0.408836 3_1:+68903308 None:intergenic
GGAGGAAGAGAGGCGAGTTA+GGG 0.409378 3_1:+68903257 None:intergenic
GCGAGTGGTGGTTGGTTTGG+AGG 0.412925 3_1:+68903197 None:intergenic
GGTGGTTGGTTTGGAGGAAG+GGG 0.418455 3_1:+68903203 None:intergenic
GTGGTGAAGGTGTGGGTGTG+TGG 0.422895 3_1:+68903327 None:intergenic
GGGACGGAGATTGGTGGAAG+GGG 0.423977 3_1:+68903287 None:intergenic
CTGCATCATCACTCTTCAAA+TGG 0.430090 3_1:-68901658 Msa0371010:three_prime_UTR
GTGTTGTGAGAGTTTGAGTT+TGG 0.431138 3_1:+68903353 None:intergenic
GGCGGCACGGACGGTGAAAG+GGG 0.436818 3_1:+68903170 None:intergenic
GTGAGGTGGAGGATTGTGGA+GGG 0.438591 3_1:+68903225 None:intergenic
ATTGGCGTTGGAAGCATTAG+TGG 0.440962 3_1:-68902382 Msa0371010:CDS
TGAGGTGGAGGATTGTGGAG+GGG 0.441869 3_1:+68903226 None:intergenic
AAGAGTGATGATGCAGCAAC+TGG 0.446921 3_1:+68901665 None:intergenic
GATTGTGGAGGGGTTGAGGA+AGG 0.459794 3_1:+68903236 None:intergenic
ATGAGGTTTGCTATTAGAGA+AGG 0.465146 3_1:-68901748 Msa0371010:CDS
TTGTGAGAGTTTGAGTTTGG+TGG 0.467241 3_1:+68903356 None:intergenic
GGTTGAGGAAGGAGGAAGAG+AGG 0.468935 3_1:+68903247 None:intergenic
GGTGAGGTGGAGGATTGTGG+AGG 0.468994 3_1:+68903224 None:intergenic
GGTGATGTAGTTGACCTTGT+TGG 0.469409 3_1:-68902162 Msa0371010:CDS
CACCATCTTAACACGATCAC+CGG 0.483098 3_1:+68901807 None:intergenic
GGCACGGACGGTGAAAGGGG+AGG 0.483277 3_1:+68903173 None:intergenic
CTCGTTGTCTCCGGTGCCGA+TGG 0.486396 3_1:-68902844 Msa0371010:CDS
CAGAAGATTGATATTCAAAG+AGG 0.486716 3_1:-68902033 Msa0371010:CDS
AGGTTTGCTATTAGAGAAGG+AGG 0.486983 3_1:-68901745 Msa0371010:CDS
ATGAGAACCACAGATGTTAC+CGG 0.488905 3_1:-68901883 Msa0371010:CDS
GGCGCTATTCTCGTTGTCTC+CGG 0.489588 3_1:-68902853 Msa0371010:CDS
TAGTTGACCTTGTTGGTTTG+AGG 0.490161 3_1:-68902155 Msa0371010:CDS
TGTGGAGGGGTTGAGGAAGG+AGG 0.491699 3_1:+68903239 None:intergenic
TATCACCACGTTTAATAGTA+GGG 0.492921 3_1:+68902355 None:intergenic
TGCCACCGGAAGAATTGAAA+GGG 0.496315 3_1:-68902199 Msa0371010:CDS
AGTTGACCTTGTTGGTTTGA+GGG 0.496349 3_1:-68902154 Msa0371010:CDS
GGGGAGGAGCGAGTGGTGGT+TGG 0.499727 3_1:+68903189 None:intergenic
CAATGATGAGATTGTGTTGA+GGG 0.503110 3_1:-68901419 Msa0371010:three_prime_UTR
CGAATTTGCCACGGGCGGCA+CGG 0.503769 3_1:+68903157 None:intergenic
TTTGCCACGGGCGGCACGGA+CGG 0.506319 3_1:+68903161 None:intergenic
TTTGCGCTCGAATTTGCCAC+GGG 0.508126 3_1:+68903149 None:intergenic
TCCATTATAGCACGCATATG+AGG 0.508261 3_1:+68901330 None:intergenic
GATTACTGGTGCTGCTCAGA+TGG 0.508789 3_1:-68902878 Msa0371010:CDS
TTGACATAATCAGCGTGACC+GGG 0.509142 3_1:+68902907 None:intergenic
AGGATGTGTTCTTTGGTTTG+AGG 0.511066 3_1:+68902814 None:intergenic
ACACATCCTTCTCGCTAAGC+AGG 0.511666 3_1:-68902800 Msa0371010:intron
TGGTTCAGCGCTATTGGCGT+TGG 0.516474 3_1:-68902394 Msa0371010:CDS
GCCATGGTCGACGTGGCCGA+TGG 0.516822 3_1:+68903104 None:intergenic
TAGTTTGGGACGGAGATTGG+TGG 0.518165 3_1:+68903281 None:intergenic
ATTCCTTGTTCAATAGCCAC+AGG 0.523741 3_1:+68901769 None:intergenic
ACCGCAGACAAGTTGTATGA+AGG 0.526503 3_1:+68901583 None:intergenic
TGAGGAGCTTCTTGAACTTG+TGG 0.528672 3_1:-68902481 Msa0371010:CDS
AGAGAAGGAGGGAAGACCGT+TGG 0.533076 3_1:-68901733 Msa0371010:CDS
ACAATCGGAATGTCATCTCC+AGG 0.533175 3_1:+68902420 None:intergenic
TTCAAGAACACAACCACACT+CGG 0.534270 3_1:+68902525 None:intergenic
TTCACCGTCCGTGCCGCCCG+TGG 0.534451 3_1:-68903165 Msa0371010:CDS
TGGGACGGAGATTGGTGGAA+GGG 0.535402 3_1:+68903286 None:intergenic
GGAGGGAAGACCGTTGGAGC+TGG 0.536449 3_1:-68901727 Msa0371010:CDS
GGCCTATAACCAGCAAAGAA+AGG 0.537786 3_1:+68901916 None:intergenic
GGTGAAAGGGGAGGAGCGAG+TGG 0.540841 3_1:+68903182 None:intergenic
TTTGACATAATCAGCGTGAC+CGG 0.542109 3_1:+68902906 None:intergenic
AAGCGGAAGTGGTGAAGGTG+TGG 0.545502 3_1:+68903319 None:intergenic
TATGCTCATGTTGATTGCCC+CGG 0.546751 3_1:-68902925 Msa0371010:CDS
AATGGAAGCGGAAGTGGTGA+AGG 0.549887 3_1:+68903314 None:intergenic
GGTGAGAGCAGCGGTTAAAG+TGG 0.550233 3_1:+68903077 None:intergenic
CAAGGATGAGGAGTCGAAGA+TGG 0.551958 3_1:-68901836 Msa0371010:CDS
CAATTCATTTCGATAAGAAG+AGG 0.553893 3_1:-68903535 Msa0371010:five_prime_UTR
GGTTTGAGGCATAGGACCAT+CGG 0.555353 3_1:+68902828 None:intergenic
ACCATGGCTTTGGCTTCTCT+AGG 0.555375 3_1:-68903057 Msa0371010:CDS
AGAAGAGAAGAGAAGAGAAG+AGG 0.555485 3_1:+68903435 None:intergenic
TAATTACCTGCTTAGCGAGA+AGG 0.556327 3_1:+68902794 None:intergenic
ACGAGGAGCACTACAGTGAC+CGG 0.557284 3_1:-68902129 Msa0371010:CDS
CCGCAGACAAGTTGTATGAA+GGG 0.558624 3_1:+68901584 None:intergenic
AGCGGAAGTGGTGAAGGTGT+GGG 0.561639 3_1:+68903320 None:intergenic
GGTTTGCTATTAGAGAAGGA+GGG 0.562103 3_1:-68901744 Msa0371010:CDS
AGCGCTGAACCAGAAACAAT+CGG 0.562250 3_1:+68902405 None:intergenic
GGAAGGGGAGGAAATGGAAG+CGG 0.564051 3_1:+68903302 None:intergenic
CATCTCAACATCGGAACCAT+CGG 0.564830 3_1:-68903120 Msa0371010:CDS
TTGGGACGGAGATTGGTGGA+AGG 0.565908 3_1:+68903285 None:intergenic
AGGCATAGGACCATCGGCAC+CGG 0.568713 3_1:+68902834 None:intergenic
GAGTTAGGGTTAGTTTGGGA+CGG 0.569223 3_1:+68903271 None:intergenic
GATTGATATTCAAAGAGGGA+TGG 0.573204 3_1:-68902028 Msa0371010:CDS
TCCGATAACACCAGCTCCAA+CGG 0.573833 3_1:+68901717 None:intergenic
GAAAGGGGAGGAGCGAGTGG+TGG 0.575537 3_1:+68903185 None:intergenic
TTGCCACCGGAAGAATTGAA+AGG 0.577024 3_1:-68902200 Msa0371010:CDS
GTCCCTGTGGCTATTGAACA+AGG 0.580048 3_1:-68901772 Msa0371010:CDS
TGCTATGGCTGGTGATAACG+TGG 0.580824 3_1:-68902076 Msa0371010:CDS
TTAAACGTGGTGATAACGAG+TGG 0.581448 3_1:-68902347 Msa0371010:CDS
TGGCTATTGAACAAGGAATG+AGG 0.586309 3_1:-68901765 Msa0371010:CDS
TCTTTCGGAGTGAAGAGAAG+AGG 0.587110 3_1:+68903476 None:intergenic
TTCTCTTCACTCCGAAAGAG+AGG 0.587313 3_1:-68903472 Msa0371010:five_prime_UTR
TATCATGAATGACAAGGATG+AGG 0.592077 3_1:-68901848 Msa0371010:CDS
GCCCGGTGATCGTGTTAAGA+TGG 0.593994 3_1:-68901809 Msa0371010:CDS
AATTAAGGGTAAAACTGTAA+CGG 0.602876 3_1:+68901391 None:intergenic
GAAGCTCCTCATCATCCACT+TGG 0.605442 3_1:+68902493 None:intergenic
ACCATCTTAACACGATCACC+GGG 0.606257 3_1:+68901808 None:intergenic
ACCATCGGCCACGTCGACCA+TGG 0.607333 3_1:-68903105 Msa0371010:CDS
AGAAGATTGATATTCAAAGA+GGG 0.608439 3_1:-68902032 Msa0371010:CDS
CAACTTACAAAACATCCCGA+TGG 0.612642 3_1:+68901500 None:intergenic
TTAGGTTGGTGTTCCGAGTG+TGG 0.613093 3_1:-68902538 Msa0371010:intron
GCGCTCGAATTTGCCACGGG+CGG 0.613444 3_1:+68903152 None:intergenic
GGTTGTGTTCTTGAACAAGC+AGG 0.616431 3_1:-68902517 Msa0371010:CDS
CTTCTGAAACATTTCCACTC+CGG 0.617102 3_1:+68902110 None:intergenic
GCAGGACCAAGTGGATGATG+AGG 0.618136 3_1:-68902499 Msa0371010:CDS
CCCTTCATACAACTTGTCTG+CGG 0.619908 3_1:-68901584 Msa0371010:three_prime_UTR
CGCGTCACTCCAAAAGTGAG+AGG 0.622139 3_1:-68903564 Msa0371010:five_prime_UTR
ATGGTTCCGATGTTGAGATG+AGG 0.622236 3_1:+68903123 None:intergenic
ACCTAGAGAAGCCAAAGCCA+TGG 0.627081 3_1:+68903056 None:intergenic
AGAAGAAATTGAAATTGCCA+TGG 0.628092 3_1:+68903386 None:intergenic
CTTCACTCTCAATTCAACCA+TGG 0.628488 3_1:-68903403 Msa0371010:exon
ACTGGTGCTGCTCAGATGGA+CGG 0.628856 3_1:-68902874 Msa0371010:CDS
CAAAGCCATGGTGAGAGCAG+CGG 0.629976 3_1:+68903068 None:intergenic
TTTAACCGCTGCTCTCACCA+TGG 0.631615 3_1:-68903073 Msa0371010:CDS
GGTCGTGGAACAGTTGCCAC+CGG 0.632950 3_1:-68902213 Msa0371010:CDS
GCTCCTGAAGAACGTGCTCG+TGG 0.633471 3_1:-68902997 Msa0371010:CDS
TTGTTGGTTTGAGGGAAACG+AGG 0.634090 3_1:-68902146 Msa0371010:CDS
TGACATAATCAGCGTGACCG+GGG 0.635143 3_1:+68902908 None:intergenic
GAGTCGAAGATGGTGATGCC+CGG 0.639572 3_1:-68901826 Msa0371010:CDS
CGGTGATCGTGTTAAGATGG+TGG 0.643732 3_1:-68901806 Msa0371010:CDS
TCGTTTCCCTCAAACCAACA+AGG 0.646895 3_1:+68902148 None:intergenic
ACGTGGTGATAACGAGTGGG+TGG 0.647355 3_1:-68902343 Msa0371010:CDS
GCATGAACATCGATCAGAGG+AGG 0.647518 3_1:+68901242 None:intergenic
GGTTGAACTCATTGTCCCTG+TGG 0.649883 3_1:-68901785 Msa0371010:CDS
TTCCTTGTTCAATAGCCACA+GGG 0.659471 3_1:+68901770 None:intergenic
ATACATTCAAACTTAGAGTG+AGG 0.660448 3_1:+68901979 None:intergenic
CTTGAACAAGCAGGACCAAG+TGG 0.660677 3_1:-68902508 Msa0371010:CDS
TAAACGTGGTGATAACGAGT+GGG 0.671761 3_1:-68902346 Msa0371010:CDS
ATAGCATGAACATCGATCAG+AGG 0.673196 3_1:+68901239 None:intergenic
CCACCGGAAGAATTGAAAGG+GGG 0.679857 3_1:-68902197 Msa0371010:CDS
AACGTGGGTTTGTTGCTGAG+AGG 0.684650 3_1:-68902060 Msa0371010:CDS
GCCACCGGAAGAATTGAAAG+GGG 0.695004 3_1:-68902198 Msa0371010:CDS
GTGGTTCTCATGTAAAACTG+AGG 0.696417 3_1:+68901895 None:intergenic
TACATCTATCATGAATGACA+AGG 0.699849 3_1:-68901854 Msa0371010:CDS
TGAATGTTACTCATAATCTG+TGG 0.702965 3_1:-68901359 Msa0371010:three_prime_UTR
TCAATGATGAGATTGTGTTG+AGG 0.708905 3_1:-68901420 Msa0371010:three_prime_UTR
GAGCACTACAGTGACCGGAG+TGG 0.711476 3_1:-68902124 Msa0371010:CDS
GCAAACCCTACTATTAAACG+TGG 0.729265 3_1:-68902360 Msa0371010:CDS
GCTATGGCTGGTGATAACGT+GGG 0.737390 3_1:-68902075 Msa0371010:CDS
TGAAGCAAAGTAGTGCACCG+CGG 0.776250 3_1:-68903587 Msa0371010:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCATCGTATTTTTTAG+GGG + chr3_1:68901845-68901864 None:intergenic 20.0%
!!! CAATTTCATCGTATTTTTTA+GGG + chr3_1:68901846-68901865 None:intergenic 20.0%
!!! TCAATTTCATCGTATTTTTT+AGG + chr3_1:68901847-68901866 None:intergenic 20.0%
!! TATGTCAAAAATATGATTAC+TGG - chr3_1:68901976-68901995 Msa0371010:CDS 20.0%
!!! TCTAGTCTGTATATAAATTT+TGG - chr3_1:68902232-68902251 Msa0371010:CDS 20.0%
!!! TGAAATGTTTGTTTTTTGAT+TGG - chr3_1:68902299-68902318 Msa0371010:CDS 20.0%
!! GGATAAGATTTATAAACTTA+TGG - chr3_1:68902546-68902565 Msa0371010:intron 20.0%
!!! ATAGGGTTAAATTTAACTTT+CGG - chr3_1:68903314-68903333 Msa0371010:CDS 20.0%
!! ATTCAACTCTATCTAATTAA+GGG + chr3_1:68903494-68903513 None:intergenic 20.0%
!!! AATTTCATCGTATTTTTTAG+GGG + chr3_1:68901845-68901864 None:intergenic 20.0%
!!! CAATTTCATCGTATTTTTTA+GGG + chr3_1:68901846-68901865 None:intergenic 20.0%
!!! TCAATTTCATCGTATTTTTT+AGG + chr3_1:68901847-68901866 None:intergenic 20.0%
!! TATGTCAAAAATATGATTAC+TGG - chr3_1:68901976-68901995 Msa0371010:CDS 20.0%
!!! TCTAGTCTGTATATAAATTT+TGG - chr3_1:68902232-68902251 Msa0371010:CDS 20.0%
!!! TGAAATGTTTGTTTTTTGAT+TGG - chr3_1:68902299-68902318 Msa0371010:CDS 20.0%
!! GGATAAGATTTATAAACTTA+TGG - chr3_1:68902546-68902565 Msa0371010:intron 20.0%
!!! ATAGGGTTAAATTTAACTTT+CGG - chr3_1:68903314-68903333 Msa0371010:CDS 20.0%
!! ATTCAACTCTATCTAATTAA+GGG + chr3_1:68903494-68903513 None:intergenic 20.0%
!!! TTTTGAATCGTTGGTTTTAA+TGG - chr3_1:68902275-68902294 Msa0371010:CDS 25.0%
!!! ATGTTTGTTTTTTGATTGGT+TGG - chr3_1:68902303-68902322 Msa0371010:CDS 25.0%
! AGAAGATTGATATTCAAAGA+GGG - chr3_1:68902836-68902855 Msa0371010:CDS 25.0%
!!! TATTGTGTATGTTTTGAAGA+AGG - chr3_1:68902909-68902928 Msa0371010:CDS 25.0%
!!! ATTGGATACTATTTTTCCAT+CGG - chr3_1:68903352-68903371 Msa0371010:CDS 25.0%
! AATTAAGGGTAAAACTGTAA+CGG + chr3_1:68903480-68903499 None:intergenic 25.0%
! CATTCAACTCTATCTAATTA+AGG + chr3_1:68903495-68903514 None:intergenic 25.0%
!!! TTTTGAATCGTTGGTTTTAA+TGG - chr3_1:68902275-68902294 Msa0371010:CDS 25.0%
!!! ATGTTTGTTTTTTGATTGGT+TGG - chr3_1:68902303-68902322 Msa0371010:CDS 25.0%
! AGAAGATTGATATTCAAAGA+GGG - chr3_1:68902836-68902855 Msa0371010:CDS 25.0%
!!! TATTGTGTATGTTTTGAAGA+AGG - chr3_1:68902909-68902928 Msa0371010:CDS 25.0%
!!! ATTGGATACTATTTTTCCAT+CGG - chr3_1:68903352-68903371 Msa0371010:CDS 25.0%
! AATTAAGGGTAAAACTGTAA+CGG + chr3_1:68903480-68903499 None:intergenic 25.0%
! CATTCAACTCTATCTAATTA+AGG + chr3_1:68903495-68903514 None:intergenic 25.0%
TTAAAAAATCTAAGCTGCAG+TGG - chr3_1:68901247-68901266 Msa0371010:three_prime_UTR 30.0%
TAAAAAATCTAAGCTGCAGT+GGG - chr3_1:68901248-68901267 Msa0371010:three_prime_UTR 30.0%
CAATTCATTTCGATAAGAAG+AGG - chr3_1:68901333-68901352 Msa0371010:three_prime_UTR 30.0%
! GGATTTTGTATTGTATTGTG+TGG + chr3_1:68901374-68901393 None:intergenic 30.0%
!! TGTTTTGTTATCCTCTCTTT+CGG + chr3_1:68901410-68901429 None:intergenic 30.0%
AGAAGAAATTGAAATTGCCA+TGG + chr3_1:68901485-68901504 None:intergenic 30.0%
! TTGGTGATTATCGTTATGTA+TGG - chr3_1:68902251-68902270 Msa0371010:CDS 30.0%
! ATGTATGGTTTTTGAATCGT+TGG - chr3_1:68902266-68902285 Msa0371010:CDS 30.0%
!! TTTTGATTGGTTGGTATCTT+AGG - chr3_1:68902312-68902331 Msa0371010:CDS 30.0%
TATCACCACGTTTAATAGTA+GGG + chr3_1:68902516-68902535 None:intergenic 30.0%
TTATCACCACGTTTAATAGT+AGG + chr3_1:68902517-68902536 None:intergenic 30.0%
! GGAAATGTTTCAGAAGATTT+TGG - chr3_1:68902765-68902784 Msa0371010:intron 30.0%
CAGAAGATTGATATTCAAAG+AGG - chr3_1:68902835-68902854 Msa0371010:CDS 30.0%
ATACATTCAAACTTAGAGTG+AGG + chr3_1:68902892-68902911 None:intergenic 30.0%
!!! TATGTTTTGAAGAAGGAAGA+AGG - chr3_1:68902916-68902935 Msa0371010:CDS 30.0%
! CATGATAGATGTAACTTTTC+CGG + chr3_1:68903007-68903026 None:intergenic 30.0%
TACATCTATCATGAATGACA+AGG - chr3_1:68903014-68903033 Msa0371010:CDS 30.0%
! TTGTCTGCGGTAATTTTATA+GGG - chr3_1:68903297-68903316 Msa0371010:CDS 30.0%
!! TTGGATACTATTTTTCCATC+GGG - chr3_1:68903353-68903372 Msa0371010:CDS 30.0%
CTCATCATTGATGCAATTTA+AGG + chr3_1:68903439-68903458 None:intergenic 30.0%
TGAATGTTACTCATAATCTG+TGG - chr3_1:68903509-68903528 Msa0371010:five_prime_UTR 30.0%
TTAAAAAATCTAAGCTGCAG+TGG - chr3_1:68901247-68901266 Msa0371010:three_prime_UTR 30.0%
TAAAAAATCTAAGCTGCAGT+GGG - chr3_1:68901248-68901267 Msa0371010:three_prime_UTR 30.0%
CAATTCATTTCGATAAGAAG+AGG - chr3_1:68901333-68901352 Msa0371010:three_prime_UTR 30.0%
! GGATTTTGTATTGTATTGTG+TGG + chr3_1:68901374-68901393 None:intergenic 30.0%
!! TGTTTTGTTATCCTCTCTTT+CGG + chr3_1:68901410-68901429 None:intergenic 30.0%
AGAAGAAATTGAAATTGCCA+TGG + chr3_1:68901485-68901504 None:intergenic 30.0%
! TTGGTGATTATCGTTATGTA+TGG - chr3_1:68902251-68902270 Msa0371010:CDS 30.0%
! ATGTATGGTTTTTGAATCGT+TGG - chr3_1:68902266-68902285 Msa0371010:CDS 30.0%
!! TTTTGATTGGTTGGTATCTT+AGG - chr3_1:68902312-68902331 Msa0371010:CDS 30.0%
TATCACCACGTTTAATAGTA+GGG + chr3_1:68902516-68902535 None:intergenic 30.0%
TTATCACCACGTTTAATAGT+AGG + chr3_1:68902517-68902536 None:intergenic 30.0%
! GGAAATGTTTCAGAAGATTT+TGG - chr3_1:68902765-68902784 Msa0371010:intron 30.0%
CAGAAGATTGATATTCAAAG+AGG - chr3_1:68902835-68902854 Msa0371010:CDS 30.0%
ATACATTCAAACTTAGAGTG+AGG + chr3_1:68902892-68902911 None:intergenic 30.0%
!!! TATGTTTTGAAGAAGGAAGA+AGG - chr3_1:68902916-68902935 Msa0371010:CDS 30.0%
! CATGATAGATGTAACTTTTC+CGG + chr3_1:68903007-68903026 None:intergenic 30.0%
TACATCTATCATGAATGACA+AGG - chr3_1:68903014-68903033 Msa0371010:CDS 30.0%
! TTGTCTGCGGTAATTTTATA+GGG - chr3_1:68903297-68903316 Msa0371010:CDS 30.0%
!! TTGGATACTATTTTTCCATC+GGG - chr3_1:68903353-68903372 Msa0371010:CDS 30.0%
CTCATCATTGATGCAATTTA+AGG + chr3_1:68903439-68903458 None:intergenic 30.0%
TGAATGTTACTCATAATCTG+TGG - chr3_1:68903509-68903528 Msa0371010:five_prime_UTR 30.0%
! TTGTGTTATCCTCTCACTTT+TGG + chr3_1:68901316-68901335 None:intergenic 35.0%
AAAAAGCCTCATCTCAACAT+CGG - chr3_1:68901739-68901758 Msa0371010:CDS 35.0%
GAATTAATGCAACAGCTGTA+TGG - chr3_1:68902174-68902193 Msa0371010:CDS 35.0%
TCCTCAATAGCTAGCAAAAA+GGG + chr3_1:68902619-68902638 None:intergenic 35.0%
ATCCTCAATAGCTAGCAAAA+AGG + chr3_1:68902620-68902639 None:intergenic 35.0%
GATTGATATTCAAAGAGGGA+TGG - chr3_1:68902840-68902859 Msa0371010:CDS 35.0%
! TATTCAAAGAGGGATGGTTT+TGG - chr3_1:68902846-68902865 Msa0371010:CDS 35.0%
TATCATGAATGACAAGGATG+AGG - chr3_1:68903020-68903039 Msa0371010:CDS 35.0%
!! ATGAGGTTTGCTATTAGAGA+AGG - chr3_1:68903120-68903139 Msa0371010:CDS 35.0%
! CTTGTCTGCGGTAATTTTAT+AGG - chr3_1:68903296-68903315 Msa0371010:CDS 35.0%
TCAATGATGAGATTGTGTTG+AGG - chr3_1:68903448-68903467 Msa0371010:five_prime_UTR 35.0%
CAATGATGAGATTGTGTTGA+GGG - chr3_1:68903449-68903468 Msa0371010:five_prime_UTR 35.0%
! TTGTGTTATCCTCTCACTTT+TGG + chr3_1:68901316-68901335 None:intergenic 35.0%
AAAAAGCCTCATCTCAACAT+CGG - chr3_1:68901739-68901758 Msa0371010:CDS 35.0%
GAATTAATGCAACAGCTGTA+TGG - chr3_1:68902174-68902193 Msa0371010:CDS 35.0%
TCCTCAATAGCTAGCAAAAA+GGG + chr3_1:68902619-68902638 None:intergenic 35.0%
ATCCTCAATAGCTAGCAAAA+AGG + chr3_1:68902620-68902639 None:intergenic 35.0%
GATTGATATTCAAAGAGGGA+TGG - chr3_1:68902840-68902859 Msa0371010:CDS 35.0%
! TATTCAAAGAGGGATGGTTT+TGG - chr3_1:68902846-68902865 Msa0371010:CDS 35.0%
TATCATGAATGACAAGGATG+AGG - chr3_1:68903020-68903039 Msa0371010:CDS 35.0%
!! ATGAGGTTTGCTATTAGAGA+AGG - chr3_1:68903120-68903139 Msa0371010:CDS 35.0%
! CTTGTCTGCGGTAATTTTAT+AGG - chr3_1:68903296-68903315 Msa0371010:CDS 35.0%
TCAATGATGAGATTGTGTTG+AGG - chr3_1:68903448-68903467 Msa0371010:five_prime_UTR 35.0%
CAATGATGAGATTGTGTTGA+GGG - chr3_1:68903449-68903468 Msa0371010:five_prime_UTR 35.0%
AGAAGAGAAGAGAAGAGAAG+AGG + chr3_1:68901436-68901455 None:intergenic 40.0%
CTTCACTCTCAATTCAACCA+TGG - chr3_1:68901465-68901484 Msa0371010:three_prime_UTR 40.0%
! TTGTGAGAGTTTGAGTTTGG+TGG + chr3_1:68901515-68901534 None:intergenic 40.0%
! GTGTTGTGAGAGTTTGAGTT+TGG + chr3_1:68901518-68901537 None:intergenic 40.0%
TTTGACATAATCAGCGTGAC+CGG + chr3_1:68901965-68901984 None:intergenic 40.0%
!! TGTTCTTTGGTTTGAGGCAT+AGG + chr3_1:68902051-68902070 None:intergenic 40.0%
!! AGGATGTGTTCTTTGGTTTG+AGG + chr3_1:68902057-68902076 None:intergenic 40.0%
TAATTACCTGCTTAGCGAGA+AGG + chr3_1:68902077-68902096 None:intergenic 40.0%
GCAACAGCTGTATGGAATTT+AGG - chr3_1:68902182-68902201 Msa0371010:CDS 40.0%
! GATTGGTTGGTATCTTAGGT+TGG - chr3_1:68902316-68902335 Msa0371010:CDS 40.0%
TTCAAGAACACAACCACACT+CGG + chr3_1:68902346-68902365 None:intergenic 40.0%
AACTTGTGGAGCTTGAAGTT+CGG - chr3_1:68902401-68902420 Msa0371010:CDS 40.0%
GATGACATTCCGATTGTTTC+TGG - chr3_1:68902454-68902473 Msa0371010:CDS 40.0%
GCAAACCCTACTATTAAACG+TGG - chr3_1:68902508-68902527 Msa0371010:CDS 40.0%
! TTAAACGTGGTGATAACGAG+TGG - chr3_1:68902521-68902540 Msa0371010:CDS 40.0%
! TAAACGTGGTGATAACGAGT+GGG - chr3_1:68902522-68902541 Msa0371010:CDS 40.0%
! TCTGTTTGTCTTTGAGGGAT+TGG + chr3_1:68902592-68902611 None:intergenic 40.0%
GGAGATCTGTTTGTCTTTGA+GGG + chr3_1:68902597-68902616 None:intergenic 40.0%
CCTCAATAGCTAGCAAAAAG+GGG + chr3_1:68902618-68902637 None:intergenic 40.0%
! GAGGATGTGTTTTCAATCAC+TGG - chr3_1:68902634-68902653 Msa0371010:intron 40.0%
!! AATTGAAAGGGGGCTTGTTA+AGG - chr3_1:68902681-68902700 Msa0371010:intron 40.0%
!! TAGTTGACCTTGTTGGTTTG+AGG - chr3_1:68902713-68902732 Msa0371010:intron 40.0%
!! AGTTGACCTTGTTGGTTTGA+GGG - chr3_1:68902714-68902733 Msa0371010:intron 40.0%
!! CTTCTGAAACATTTCCACTC+CGG + chr3_1:68902761-68902780 None:intergenic 40.0%
! GAAGATTTTGGACGATGCTA+TGG - chr3_1:68902777-68902796 Msa0371010:intron 40.0%
!!! GTTTTGAAGAAGGAAGAAGG+TGG - chr3_1:68902919-68902938 Msa0371010:CDS 40.0%
AGACATTCACCTTTCTTTGC+TGG - chr3_1:68902943-68902962 Msa0371010:CDS 40.0%
! CACCTTTCTTTGCTGGTTAT+AGG - chr3_1:68902950-68902969 Msa0371010:CDS 40.0%
GTGGTTCTCATGTAAAACTG+AGG + chr3_1:68902976-68902995 None:intergenic 40.0%
ATGAGAACCACAGATGTTAC+CGG - chr3_1:68902985-68903004 Msa0371010:CDS 40.0%
! AACTTTTCCGGTAACATCTG+TGG + chr3_1:68902995-68903014 None:intergenic 40.0%
TTCCTTGTTCAATAGCCACA+GGG + chr3_1:68903101-68903120 None:intergenic 40.0%
ATTCCTTGTTCAATAGCCAC+AGG + chr3_1:68903102-68903121 None:intergenic 40.0%
TGGCTATTGAACAAGGAATG+AGG - chr3_1:68903103-68903122 Msa0371010:CDS 40.0%
!! AGGTTTGCTATTAGAGAAGG+AGG - chr3_1:68903123-68903142 Msa0371010:CDS 40.0%
!! GGTTTGCTATTAGAGAAGGA+GGG - chr3_1:68903124-68903143 Msa0371010:CDS 40.0%
CTGCATCATCACTCTTCAAA+TGG - chr3_1:68903210-68903229 Msa0371010:CDS 40.0%
CGGATTGTCTTTAGTCGAAT+TGG - chr3_1:68903334-68903353 Msa0371010:CDS 40.0%
CAACTTACAAAACATCCCGA+TGG + chr3_1:68903371-68903390 None:intergenic 40.0%
TCCATTATAGCACGCATATG+AGG + chr3_1:68903541-68903560 None:intergenic 40.0%
AGAAGAGAAGAGAAGAGAAG+AGG + chr3_1:68901436-68901455 None:intergenic 40.0%
CTTCACTCTCAATTCAACCA+TGG - chr3_1:68901465-68901484 Msa0371010:three_prime_UTR 40.0%
! TTGTGAGAGTTTGAGTTTGG+TGG + chr3_1:68901515-68901534 None:intergenic 40.0%
! GTGTTGTGAGAGTTTGAGTT+TGG + chr3_1:68901518-68901537 None:intergenic 40.0%
TTTGACATAATCAGCGTGAC+CGG + chr3_1:68901965-68901984 None:intergenic 40.0%
!! TGTTCTTTGGTTTGAGGCAT+AGG + chr3_1:68902051-68902070 None:intergenic 40.0%
!! AGGATGTGTTCTTTGGTTTG+AGG + chr3_1:68902057-68902076 None:intergenic 40.0%
TAATTACCTGCTTAGCGAGA+AGG + chr3_1:68902077-68902096 None:intergenic 40.0%
GCAACAGCTGTATGGAATTT+AGG - chr3_1:68902182-68902201 Msa0371010:CDS 40.0%
! GATTGGTTGGTATCTTAGGT+TGG - chr3_1:68902316-68902335 Msa0371010:CDS 40.0%
TTCAAGAACACAACCACACT+CGG + chr3_1:68902346-68902365 None:intergenic 40.0%
AACTTGTGGAGCTTGAAGTT+CGG - chr3_1:68902401-68902420 Msa0371010:CDS 40.0%
GATGACATTCCGATTGTTTC+TGG - chr3_1:68902454-68902473 Msa0371010:CDS 40.0%
GCAAACCCTACTATTAAACG+TGG - chr3_1:68902508-68902527 Msa0371010:CDS 40.0%
! TTAAACGTGGTGATAACGAG+TGG - chr3_1:68902521-68902540 Msa0371010:CDS 40.0%
! TAAACGTGGTGATAACGAGT+GGG - chr3_1:68902522-68902541 Msa0371010:CDS 40.0%
! TCTGTTTGTCTTTGAGGGAT+TGG + chr3_1:68902592-68902611 None:intergenic 40.0%
GGAGATCTGTTTGTCTTTGA+GGG + chr3_1:68902597-68902616 None:intergenic 40.0%
CCTCAATAGCTAGCAAAAAG+GGG + chr3_1:68902618-68902637 None:intergenic 40.0%
! GAGGATGTGTTTTCAATCAC+TGG - chr3_1:68902634-68902653 Msa0371010:intron 40.0%
!! AATTGAAAGGGGGCTTGTTA+AGG - chr3_1:68902681-68902700 Msa0371010:intron 40.0%
!! TAGTTGACCTTGTTGGTTTG+AGG - chr3_1:68902713-68902732 Msa0371010:intron 40.0%
!! AGTTGACCTTGTTGGTTTGA+GGG - chr3_1:68902714-68902733 Msa0371010:intron 40.0%
!! CTTCTGAAACATTTCCACTC+CGG + chr3_1:68902761-68902780 None:intergenic 40.0%
! GAAGATTTTGGACGATGCTA+TGG - chr3_1:68902777-68902796 Msa0371010:intron 40.0%
!!! GTTTTGAAGAAGGAAGAAGG+TGG - chr3_1:68902919-68902938 Msa0371010:CDS 40.0%
AGACATTCACCTTTCTTTGC+TGG - chr3_1:68902943-68902962 Msa0371010:CDS 40.0%
! CACCTTTCTTTGCTGGTTAT+AGG - chr3_1:68902950-68902969 Msa0371010:CDS 40.0%
GTGGTTCTCATGTAAAACTG+AGG + chr3_1:68902976-68902995 None:intergenic 40.0%
ATGAGAACCACAGATGTTAC+CGG - chr3_1:68902985-68903004 Msa0371010:CDS 40.0%
! AACTTTTCCGGTAACATCTG+TGG + chr3_1:68902995-68903014 None:intergenic 40.0%
TTCCTTGTTCAATAGCCACA+GGG + chr3_1:68903101-68903120 None:intergenic 40.0%
ATTCCTTGTTCAATAGCCAC+AGG + chr3_1:68903102-68903121 None:intergenic 40.0%
TGGCTATTGAACAAGGAATG+AGG - chr3_1:68903103-68903122 Msa0371010:CDS 40.0%
!! AGGTTTGCTATTAGAGAAGG+AGG - chr3_1:68903123-68903142 Msa0371010:CDS 40.0%
!! GGTTTGCTATTAGAGAAGGA+GGG - chr3_1:68903124-68903143 Msa0371010:CDS 40.0%
CTGCATCATCACTCTTCAAA+TGG - chr3_1:68903210-68903229 Msa0371010:CDS 40.0%
CGGATTGTCTTTAGTCGAAT+TGG - chr3_1:68903334-68903353 Msa0371010:CDS 40.0%
CAACTTACAAAACATCCCGA+TGG + chr3_1:68903371-68903390 None:intergenic 40.0%
TCCATTATAGCACGCATATG+AGG + chr3_1:68903541-68903560 None:intergenic 40.0%
TCTTTCGGAGTGAAGAGAAG+AGG + chr3_1:68901395-68901414 None:intergenic 45.0%
TTCTCTTCACTCCGAAAGAG+AGG - chr3_1:68901396-68901415 Msa0371010:three_prime_UTR 45.0%
!! GAGTTAGGGTTAGTTTGGGA+CGG + chr3_1:68901600-68901619 None:intergenic 45.0%
!! AGGCGAGTTAGGGTTAGTTT+GGG + chr3_1:68901604-68901623 None:intergenic 45.0%
! TTTTGCGCTCGAATTTGCCA+CGG + chr3_1:68901723-68901742 None:intergenic 45.0%
ATGGTTCCGATGTTGAGATG+AGG + chr3_1:68901748-68901767 None:intergenic 45.0%
CATCTCAACATCGGAACCAT+CGG - chr3_1:68901748-68901767 Msa0371010:CDS 45.0%
!! CGGTTAAAGTGGTTTTGCCA+TGG + chr3_1:68901783-68901802 None:intergenic 45.0%
! TATGCTCATGTTGATTGCCC+CGG - chr3_1:68901943-68901962 Msa0371010:CDS 45.0%
TTGACATAATCAGCGTGACC+GGG + chr3_1:68901964-68901983 None:intergenic 45.0%
AGCGAGAAGGATGTGTTCTT+TGG + chr3_1:68902064-68902083 None:intergenic 45.0%
GGTTGTGTTCTTGAACAAGC+AGG - chr3_1:68902351-68902370 Msa0371010:CDS 45.0%
TGAGGAGCTTCTTGAACTTG+TGG - chr3_1:68902387-68902406 Msa0371010:CDS 45.0%
ACTTGTGGAGCTTGAAGTTC+GGG - chr3_1:68902402-68902421 Msa0371010:CDS 45.0%
CTCTCGTCTTACGAATTTCC+TGG - chr3_1:68902430-68902449 Msa0371010:CDS 45.0%
ACAATCGGAATGTCATCTCC+AGG + chr3_1:68902451-68902470 None:intergenic 45.0%
! AGCGCTGAACCAGAAACAAT+CGG + chr3_1:68902466-68902485 None:intergenic 45.0%
!! TGTTTCTGGTTCAGCGCTAT+TGG - chr3_1:68902468-68902487 Msa0371010:CDS 45.0%
!! ATTGGCGTTGGAAGCATTAG+TGG - chr3_1:68902486-68902505 Msa0371010:CDS 45.0%
GGGAGATCTGTTTGTCTTTG+AGG + chr3_1:68902598-68902617 None:intergenic 45.0%
! CCCCTTTTTGCTAGCTATTG+AGG - chr3_1:68902615-68902634 Msa0371010:intron 45.0%
! GTGTTTTCAATCACTGGTCG+TGG - chr3_1:68902640-68902659 Msa0371010:intron 45.0%
TTGCCACCGGAAGAATTGAA+AGG - chr3_1:68902668-68902687 Msa0371010:intron 45.0%
TGCCACCGGAAGAATTGAAA+GGG - chr3_1:68902669-68902688 Msa0371010:intron 45.0%
AAGCCCCCTTTCAATTCTTC+CGG + chr3_1:68902677-68902696 None:intergenic 45.0%
GGTGATGTAGTTGACCTTGT+TGG - chr3_1:68902706-68902725 Msa0371010:intron 45.0%
TCGTTTCCCTCAAACCAACA+AGG + chr3_1:68902723-68902742 None:intergenic 45.0%
!! TTGTTGGTTTGAGGGAAACG+AGG - chr3_1:68902722-68902741 Msa0371010:intron 45.0%
! ATTTTGGACGATGCTATGGC+TGG - chr3_1:68902781-68902800 Msa0371010:intron 45.0%
GGCCTATAACCAGCAAAGAA+AGG + chr3_1:68902955-68902974 None:intergenic 45.0%
ACCATCTTAACACGATCACC+GGG + chr3_1:68903063-68903082 None:intergenic 45.0%
CACCATCTTAACACGATCAC+CGG + chr3_1:68903064-68903083 None:intergenic 45.0%
! AAGAGTGATGATGCAGCAAC+TGG + chr3_1:68903206-68903225 None:intergenic 45.0%
CCGCAGACAAGTTGTATGAA+GGG + chr3_1:68903287-68903306 None:intergenic 45.0%
CCCTTCATACAACTTGTCTG+CGG - chr3_1:68903284-68903303 Msa0371010:CDS 45.0%
ACCGCAGACAAGTTGTATGA+AGG + chr3_1:68903288-68903307 None:intergenic 45.0%
GCCTCATATGCGTGCTATAA+TGG - chr3_1:68903537-68903556 Msa0371010:five_prime_UTR 45.0%
TCTTTCGGAGTGAAGAGAAG+AGG + chr3_1:68901395-68901414 None:intergenic 45.0%
TTCTCTTCACTCCGAAAGAG+AGG - chr3_1:68901396-68901415 Msa0371010:three_prime_UTR 45.0%
!! GAGTTAGGGTTAGTTTGGGA+CGG + chr3_1:68901600-68901619 None:intergenic 45.0%
!! AGGCGAGTTAGGGTTAGTTT+GGG + chr3_1:68901604-68901623 None:intergenic 45.0%
! TTTTGCGCTCGAATTTGCCA+CGG + chr3_1:68901723-68901742 None:intergenic 45.0%
ATGGTTCCGATGTTGAGATG+AGG + chr3_1:68901748-68901767 None:intergenic 45.0%
CATCTCAACATCGGAACCAT+CGG - chr3_1:68901748-68901767 Msa0371010:CDS 45.0%
!! CGGTTAAAGTGGTTTTGCCA+TGG + chr3_1:68901783-68901802 None:intergenic 45.0%
! TATGCTCATGTTGATTGCCC+CGG - chr3_1:68901943-68901962 Msa0371010:CDS 45.0%
TTGACATAATCAGCGTGACC+GGG + chr3_1:68901964-68901983 None:intergenic 45.0%
AGCGAGAAGGATGTGTTCTT+TGG + chr3_1:68902064-68902083 None:intergenic 45.0%
GGTTGTGTTCTTGAACAAGC+AGG - chr3_1:68902351-68902370 Msa0371010:CDS 45.0%
TGAGGAGCTTCTTGAACTTG+TGG - chr3_1:68902387-68902406 Msa0371010:CDS 45.0%
ACTTGTGGAGCTTGAAGTTC+GGG - chr3_1:68902402-68902421 Msa0371010:CDS 45.0%
CTCTCGTCTTACGAATTTCC+TGG - chr3_1:68902430-68902449 Msa0371010:CDS 45.0%
ACAATCGGAATGTCATCTCC+AGG + chr3_1:68902451-68902470 None:intergenic 45.0%
! AGCGCTGAACCAGAAACAAT+CGG + chr3_1:68902466-68902485 None:intergenic 45.0%
!! TGTTTCTGGTTCAGCGCTAT+TGG - chr3_1:68902468-68902487 Msa0371010:CDS 45.0%
!! ATTGGCGTTGGAAGCATTAG+TGG - chr3_1:68902486-68902505 Msa0371010:CDS 45.0%
GGGAGATCTGTTTGTCTTTG+AGG + chr3_1:68902598-68902617 None:intergenic 45.0%
! CCCCTTTTTGCTAGCTATTG+AGG - chr3_1:68902615-68902634 Msa0371010:intron 45.0%
! GTGTTTTCAATCACTGGTCG+TGG - chr3_1:68902640-68902659 Msa0371010:intron 45.0%
TTGCCACCGGAAGAATTGAA+AGG - chr3_1:68902668-68902687 Msa0371010:intron 45.0%
TGCCACCGGAAGAATTGAAA+GGG - chr3_1:68902669-68902688 Msa0371010:intron 45.0%
AAGCCCCCTTTCAATTCTTC+CGG + chr3_1:68902677-68902696 None:intergenic 45.0%
GGTGATGTAGTTGACCTTGT+TGG - chr3_1:68902706-68902725 Msa0371010:intron 45.0%
TCGTTTCCCTCAAACCAACA+AGG + chr3_1:68902723-68902742 None:intergenic 45.0%
!! TTGTTGGTTTGAGGGAAACG+AGG - chr3_1:68902722-68902741 Msa0371010:intron 45.0%
! ATTTTGGACGATGCTATGGC+TGG - chr3_1:68902781-68902800 Msa0371010:intron 45.0%
GGCCTATAACCAGCAAAGAA+AGG + chr3_1:68902955-68902974 None:intergenic 45.0%
ACCATCTTAACACGATCACC+GGG + chr3_1:68903063-68903082 None:intergenic 45.0%
CACCATCTTAACACGATCAC+CGG + chr3_1:68903064-68903083 None:intergenic 45.0%
! AAGAGTGATGATGCAGCAAC+TGG + chr3_1:68903206-68903225 None:intergenic 45.0%
CCGCAGACAAGTTGTATGAA+GGG + chr3_1:68903287-68903306 None:intergenic 45.0%
CCCTTCATACAACTTGTCTG+CGG - chr3_1:68903284-68903303 Msa0371010:CDS 45.0%
ACCGCAGACAAGTTGTATGA+AGG + chr3_1:68903288-68903307 None:intergenic 45.0%
GCCTCATATGCGTGCTATAA+TGG - chr3_1:68903537-68903556 Msa0371010:five_prime_UTR 45.0%
TGAAGCAAAGTAGTGCACCG+CGG - chr3_1:68901281-68901300 Msa0371010:three_prime_UTR 50.0%
AATGGAAGCGGAAGTGGTGA+AGG + chr3_1:68901557-68901576 None:intergenic 50.0%
ATTGGTGGAAGGGGAGGAAA+TGG + chr3_1:68901575-68901594 None:intergenic 50.0%
! TAGTTTGGGACGGAGATTGG+TGG + chr3_1:68901590-68901609 None:intergenic 50.0%
!! GGTTAGTTTGGGACGGAGAT+TGG + chr3_1:68901593-68901612 None:intergenic 50.0%
!! GAGGCGAGTTAGGGTTAGTT+TGG + chr3_1:68901605-68901624 None:intergenic 50.0%
!! TGGTGGTTGGTTTGGAGGAA+GGG + chr3_1:68901669-68901688 None:intergenic 50.0%
TTTGCGCTCGAATTTGCCAC+GGG + chr3_1:68901722-68901741 None:intergenic 50.0%
TTTAACCGCTGCTCTCACCA+TGG - chr3_1:68901795-68901814 Msa0371010:CDS 50.0%
!! ACCATGGCTTTGGCTTCTCT+AGG - chr3_1:68901811-68901830 Msa0371010:CDS 50.0%
ACCTAGAGAAGCCAAAGCCA+TGG + chr3_1:68901815-68901834 None:intergenic 50.0%
ATACCACGAGCACGTTCTTC+AGG + chr3_1:68901877-68901896 None:intergenic 50.0%
TGACATAATCAGCGTGACCG+GGG + chr3_1:68901963-68901982 None:intergenic 50.0%
!! GATTACTGGTGCTGCTCAGA+TGG - chr3_1:68901990-68902009 Msa0371010:CDS 50.0%
! GGTTTGAGGCATAGGACCAT+CGG + chr3_1:68902043-68902062 None:intergenic 50.0%
ACACATCCTTCTCGCTAAGC+AGG - chr3_1:68902068-68902087 Msa0371010:CDS 50.0%
!! TTAGGTTGGTGTTCCGAGTG+TGG - chr3_1:68902330-68902349 Msa0371010:CDS 50.0%
CTTGAACAAGCAGGACCAAG+TGG - chr3_1:68902360-68902379 Msa0371010:CDS 50.0%
GAAGCTCCTCATCATCCACT+TGG + chr3_1:68902378-68902397 None:intergenic 50.0%
GCCACCGGAAGAATTGAAAG+GGG - chr3_1:68902670-68902689 Msa0371010:intron 50.0%
CCACCGGAAGAATTGAAAGG+GGG - chr3_1:68902671-68902690 Msa0371010:intron 50.0%
!! GAAAGGGGGCTTGTTAAGGT+TGG - chr3_1:68902685-68902704 Msa0371010:intron 50.0%
! TGCTATGGCTGGTGATAACG+TGG - chr3_1:68902792-68902811 Msa0371010:intron 50.0%
! GCTATGGCTGGTGATAACGT+GGG - chr3_1:68902793-68902812 Msa0371010:intron 50.0%
!! AACGTGGGTTTGTTGCTGAG+AGG - chr3_1:68902808-68902827 Msa0371010:CDS 50.0%
GAGTGAGGAGTGATAGTTCC+AGG + chr3_1:68902877-68902896 None:intergenic 50.0%
CAAGGATGAGGAGTCGAAGA+TGG - chr3_1:68903032-68903051 Msa0371010:CDS 50.0%
CGGTGATCGTGTTAAGATGG+TGG - chr3_1:68903062-68903081 Msa0371010:CDS 50.0%
GGTTGAACTCATTGTCCCTG+TGG - chr3_1:68903083-68903102 Msa0371010:CDS 50.0%
GTCCCTGTGGCTATTGAACA+AGG - chr3_1:68903096-68903115 Msa0371010:CDS 50.0%
!! ACCGTTGGAGCTGGTGTTAT+CGG - chr3_1:68903150-68903169 Msa0371010:CDS 50.0%
TCCGATAACACCAGCTCCAA+CGG + chr3_1:68903154-68903173 None:intergenic 50.0%
TGAAGCAAAGTAGTGCACCG+CGG - chr3_1:68901281-68901300 Msa0371010:three_prime_UTR 50.0%
AATGGAAGCGGAAGTGGTGA+AGG + chr3_1:68901557-68901576 None:intergenic 50.0%
ATTGGTGGAAGGGGAGGAAA+TGG + chr3_1:68901575-68901594 None:intergenic 50.0%
! TAGTTTGGGACGGAGATTGG+TGG + chr3_1:68901590-68901609 None:intergenic 50.0%
!! GGTTAGTTTGGGACGGAGAT+TGG + chr3_1:68901593-68901612 None:intergenic 50.0%
!! GAGGCGAGTTAGGGTTAGTT+TGG + chr3_1:68901605-68901624 None:intergenic 50.0%
!! TGGTGGTTGGTTTGGAGGAA+GGG + chr3_1:68901669-68901688 None:intergenic 50.0%
TTTGCGCTCGAATTTGCCAC+GGG + chr3_1:68901722-68901741 None:intergenic 50.0%
TTTAACCGCTGCTCTCACCA+TGG - chr3_1:68901795-68901814 Msa0371010:CDS 50.0%
!! ACCATGGCTTTGGCTTCTCT+AGG - chr3_1:68901811-68901830 Msa0371010:CDS 50.0%
ACCTAGAGAAGCCAAAGCCA+TGG + chr3_1:68901815-68901834 None:intergenic 50.0%
ATACCACGAGCACGTTCTTC+AGG + chr3_1:68901877-68901896 None:intergenic 50.0%
TGACATAATCAGCGTGACCG+GGG + chr3_1:68901963-68901982 None:intergenic 50.0%
!! GATTACTGGTGCTGCTCAGA+TGG - chr3_1:68901990-68902009 Msa0371010:CDS 50.0%
! GGTTTGAGGCATAGGACCAT+CGG + chr3_1:68902043-68902062 None:intergenic 50.0%
ACACATCCTTCTCGCTAAGC+AGG - chr3_1:68902068-68902087 Msa0371010:CDS 50.0%
!! TTAGGTTGGTGTTCCGAGTG+TGG - chr3_1:68902330-68902349 Msa0371010:CDS 50.0%
CTTGAACAAGCAGGACCAAG+TGG - chr3_1:68902360-68902379 Msa0371010:CDS 50.0%
GAAGCTCCTCATCATCCACT+TGG + chr3_1:68902378-68902397 None:intergenic 50.0%
GCCACCGGAAGAATTGAAAG+GGG - chr3_1:68902670-68902689 Msa0371010:intron 50.0%
CCACCGGAAGAATTGAAAGG+GGG - chr3_1:68902671-68902690 Msa0371010:intron 50.0%
!! GAAAGGGGGCTTGTTAAGGT+TGG - chr3_1:68902685-68902704 Msa0371010:intron 50.0%
! TGCTATGGCTGGTGATAACG+TGG - chr3_1:68902792-68902811 Msa0371010:intron 50.0%
! GCTATGGCTGGTGATAACGT+GGG - chr3_1:68902793-68902812 Msa0371010:intron 50.0%
!! AACGTGGGTTTGTTGCTGAG+AGG - chr3_1:68902808-68902827 Msa0371010:CDS 50.0%
GAGTGAGGAGTGATAGTTCC+AGG + chr3_1:68902877-68902896 None:intergenic 50.0%
CAAGGATGAGGAGTCGAAGA+TGG - chr3_1:68903032-68903051 Msa0371010:CDS 50.0%
CGGTGATCGTGTTAAGATGG+TGG - chr3_1:68903062-68903081 Msa0371010:CDS 50.0%
GGTTGAACTCATTGTCCCTG+TGG - chr3_1:68903083-68903102 Msa0371010:CDS 50.0%
GTCCCTGTGGCTATTGAACA+AGG - chr3_1:68903096-68903115 Msa0371010:CDS 50.0%
!! ACCGTTGGAGCTGGTGTTAT+CGG - chr3_1:68903150-68903169 Msa0371010:CDS 50.0%
TCCGATAACACCAGCTCCAA+CGG + chr3_1:68903154-68903173 None:intergenic 50.0%
CGCGTCACTCCAAAAGTGAG+AGG - chr3_1:68901304-68901323 Msa0371010:three_prime_UTR 55.0%
! TGAAGGTGTGGGTGTGTGGT+GGG + chr3_1:68901540-68901559 None:intergenic 55.0%
! AGCGGAAGTGGTGAAGGTGT+GGG + chr3_1:68901551-68901570 None:intergenic 55.0%
AAGCGGAAGTGGTGAAGGTG+TGG + chr3_1:68901552-68901571 None:intergenic 55.0%
GGAGGAAATGGAAGCGGAAG+TGG + chr3_1:68901563-68901582 None:intergenic 55.0%
GGAAGGGGAGGAAATGGAAG+CGG + chr3_1:68901569-68901588 None:intergenic 55.0%
TGGGACGGAGATTGGTGGAA+GGG + chr3_1:68901585-68901604 None:intergenic 55.0%
TTGGGACGGAGATTGGTGGA+AGG + chr3_1:68901586-68901605 None:intergenic 55.0%
GGAGGAAGAGAGGCGAGTTA+GGG + chr3_1:68901614-68901633 None:intergenic 55.0%
AGGAGGAAGAGAGGCGAGTT+AGG + chr3_1:68901615-68901634 None:intergenic 55.0%
GGTTGAGGAAGGAGGAAGAG+AGG + chr3_1:68901624-68901643 None:intergenic 55.0%
GATTGTGGAGGGGTTGAGGA+AGG + chr3_1:68901635-68901654 None:intergenic 55.0%
TGAGGTGGAGGATTGTGGAG+GGG + chr3_1:68901645-68901664 None:intergenic 55.0%
GTGAGGTGGAGGATTGTGGA+GGG + chr3_1:68901646-68901665 None:intergenic 55.0%
!! TTGGTTTGGAGGAAGGGGTG+AGG + chr3_1:68901663-68901682 None:intergenic 55.0%
!! GGTGGTTGGTTTGGAGGAAG+GGG + chr3_1:68901668-68901687 None:intergenic 55.0%
!! GTGGTGGTTGGTTTGGAGGA+AGG + chr3_1:68901670-68901689 None:intergenic 55.0%
!! TGGTTTTGCCATGGTCGACG+TGG + chr3_1:68901774-68901793 None:intergenic 55.0%
GGTGAGAGCAGCGGTTAAAG+TGG + chr3_1:68901794-68901813 None:intergenic 55.0%
CAAAGCCATGGTGAGAGCAG+CGG + chr3_1:68901803-68901822 None:intergenic 55.0%
!! ACTGGTGCTGCTCAGATGGA+CGG - chr3_1:68901994-68902013 Msa0371010:CDS 55.0%
GGCGCTATTCTCGTTGTCTC+CGG - chr3_1:68902015-68902034 Msa0371010:CDS 55.0%
GCAGGACCAAGTGGATGATG+AGG - chr3_1:68902369-68902388 Msa0371010:CDS 55.0%
TGGTTCAGCGCTATTGGCGT+TGG - chr3_1:68902474-68902493 Msa0371010:CDS 55.0%
! ACGTGGTGATAACGAGTGGG+TGG - chr3_1:68902525-68902544 Msa0371010:CDS 55.0%
CCCCCTTTCAATTCTTCCGG+TGG + chr3_1:68902674-68902693 None:intergenic 55.0%
!! ACGAGGAGCACTACAGTGAC+CGG - chr3_1:68902739-68902758 Msa0371010:intron 55.0%
!!! GGGATGGTTTTGGCTAAGCC+TGG - chr3_1:68902856-68902875 Msa0371010:CDS 55.0%
! GAGTCGAAGATGGTGATGCC+CGG - chr3_1:68903042-68903061 Msa0371010:CDS 55.0%
GCCCGGTGATCGTGTTAAGA+TGG - chr3_1:68903059-68903078 Msa0371010:CDS 55.0%
AGAGAAGGAGGGAAGACCGT+TGG - chr3_1:68903135-68903154 Msa0371010:CDS 55.0%
CGCGTCACTCCAAAAGTGAG+AGG - chr3_1:68901304-68901323 Msa0371010:three_prime_UTR 55.0%
! TGAAGGTGTGGGTGTGTGGT+GGG + chr3_1:68901540-68901559 None:intergenic 55.0%
! AGCGGAAGTGGTGAAGGTGT+GGG + chr3_1:68901551-68901570 None:intergenic 55.0%
AAGCGGAAGTGGTGAAGGTG+TGG + chr3_1:68901552-68901571 None:intergenic 55.0%
GGAGGAAATGGAAGCGGAAG+TGG + chr3_1:68901563-68901582 None:intergenic 55.0%
GGAAGGGGAGGAAATGGAAG+CGG + chr3_1:68901569-68901588 None:intergenic 55.0%
TGGGACGGAGATTGGTGGAA+GGG + chr3_1:68901585-68901604 None:intergenic 55.0%
TTGGGACGGAGATTGGTGGA+AGG + chr3_1:68901586-68901605 None:intergenic 55.0%
GGAGGAAGAGAGGCGAGTTA+GGG + chr3_1:68901614-68901633 None:intergenic 55.0%
AGGAGGAAGAGAGGCGAGTT+AGG + chr3_1:68901615-68901634 None:intergenic 55.0%
GGTTGAGGAAGGAGGAAGAG+AGG + chr3_1:68901624-68901643 None:intergenic 55.0%
GATTGTGGAGGGGTTGAGGA+AGG + chr3_1:68901635-68901654 None:intergenic 55.0%
TGAGGTGGAGGATTGTGGAG+GGG + chr3_1:68901645-68901664 None:intergenic 55.0%
GTGAGGTGGAGGATTGTGGA+GGG + chr3_1:68901646-68901665 None:intergenic 55.0%
!! TTGGTTTGGAGGAAGGGGTG+AGG + chr3_1:68901663-68901682 None:intergenic 55.0%
!! GGTGGTTGGTTTGGAGGAAG+GGG + chr3_1:68901668-68901687 None:intergenic 55.0%
!! GTGGTGGTTGGTTTGGAGGA+AGG + chr3_1:68901670-68901689 None:intergenic 55.0%
!! TGGTTTTGCCATGGTCGACG+TGG + chr3_1:68901774-68901793 None:intergenic 55.0%
GGTGAGAGCAGCGGTTAAAG+TGG + chr3_1:68901794-68901813 None:intergenic 55.0%
CAAAGCCATGGTGAGAGCAG+CGG + chr3_1:68901803-68901822 None:intergenic 55.0%
!! ACTGGTGCTGCTCAGATGGA+CGG - chr3_1:68901994-68902013 Msa0371010:CDS 55.0%
GGCGCTATTCTCGTTGTCTC+CGG - chr3_1:68902015-68902034 Msa0371010:CDS 55.0%
GCAGGACCAAGTGGATGATG+AGG - chr3_1:68902369-68902388 Msa0371010:CDS 55.0%
TGGTTCAGCGCTATTGGCGT+TGG - chr3_1:68902474-68902493 Msa0371010:CDS 55.0%
! ACGTGGTGATAACGAGTGGG+TGG - chr3_1:68902525-68902544 Msa0371010:CDS 55.0%
CCCCCTTTCAATTCTTCCGG+TGG + chr3_1:68902674-68902693 None:intergenic 55.0%
!! ACGAGGAGCACTACAGTGAC+CGG - chr3_1:68902739-68902758 Msa0371010:intron 55.0%
!!! GGGATGGTTTTGGCTAAGCC+TGG - chr3_1:68902856-68902875 Msa0371010:CDS 55.0%
! GAGTCGAAGATGGTGATGCC+CGG - chr3_1:68903042-68903061 Msa0371010:CDS 55.0%
GCCCGGTGATCGTGTTAAGA+TGG - chr3_1:68903059-68903078 Msa0371010:CDS 55.0%
AGAGAAGGAGGGAAGACCGT+TGG - chr3_1:68903135-68903154 Msa0371010:CDS 55.0%
!!! ACTTTTGGAGTGACGCGCCG+CGG + chr3_1:68901301-68901320 None:intergenic 60.0%
! GTGAAGGTGTGGGTGTGTGG+TGG + chr3_1:68901541-68901560 None:intergenic 60.0%
! GTGGTGAAGGTGTGGGTGTG+TGG + chr3_1:68901544-68901563 None:intergenic 60.0%
ACGGAGATTGGTGGAAGGGG+AGG + chr3_1:68901581-68901600 None:intergenic 60.0%
GGGACGGAGATTGGTGGAAG+GGG + chr3_1:68901584-68901603 None:intergenic 60.0%
TGTGGAGGGGTTGAGGAAGG+AGG + chr3_1:68901632-68901651 None:intergenic 60.0%
GGAGGATTGTGGAGGGGTTG+AGG + chr3_1:68901639-68901658 None:intergenic 60.0%
GGTGAGGTGGAGGATTGTGG+AGG + chr3_1:68901647-68901666 None:intergenic 60.0%
AGGGGTGAGGTGGAGGATTG+TGG + chr3_1:68901650-68901669 None:intergenic 60.0%
GTTTGGAGGAAGGGGTGAGG+TGG + chr3_1:68901660-68901679 None:intergenic 60.0%
!! GCGAGTGGTGGTTGGTTTGG+AGG + chr3_1:68901674-68901693 None:intergenic 60.0%
! GGAGCGAGTGGTGGTTGGTT+TGG + chr3_1:68901677-68901696 None:intergenic 60.0%
CGCTGCTCTCACCATGGCTT+TGG - chr3_1:68901801-68901820 Msa0371010:CDS 60.0%
GCTCCTGAAGAACGTGCTCG+TGG - chr3_1:68901871-68901890 Msa0371010:CDS 60.0%
AGGCATAGGACCATCGGCAC+CGG + chr3_1:68902037-68902056 None:intergenic 60.0%
GGTCGTGGAACAGTTGCCAC+CGG - chr3_1:68902655-68902674 Msa0371010:intron 60.0%
GAGCACTACAGTGACCGGAG+TGG - chr3_1:68902744-68902763 Msa0371010:intron 60.0%
!!! ACTTTTGGAGTGACGCGCCG+CGG + chr3_1:68901301-68901320 None:intergenic 60.0%
! GTGAAGGTGTGGGTGTGTGG+TGG + chr3_1:68901541-68901560 None:intergenic 60.0%
! GTGGTGAAGGTGTGGGTGTG+TGG + chr3_1:68901544-68901563 None:intergenic 60.0%
ACGGAGATTGGTGGAAGGGG+AGG + chr3_1:68901581-68901600 None:intergenic 60.0%
GGGACGGAGATTGGTGGAAG+GGG + chr3_1:68901584-68901603 None:intergenic 60.0%
TGTGGAGGGGTTGAGGAAGG+AGG + chr3_1:68901632-68901651 None:intergenic 60.0%
GGAGGATTGTGGAGGGGTTG+AGG + chr3_1:68901639-68901658 None:intergenic 60.0%
GGTGAGGTGGAGGATTGTGG+AGG + chr3_1:68901647-68901666 None:intergenic 60.0%
AGGGGTGAGGTGGAGGATTG+TGG + chr3_1:68901650-68901669 None:intergenic 60.0%
GTTTGGAGGAAGGGGTGAGG+TGG + chr3_1:68901660-68901679 None:intergenic 60.0%
!! GCGAGTGGTGGTTGGTTTGG+AGG + chr3_1:68901674-68901693 None:intergenic 60.0%
! GGAGCGAGTGGTGGTTGGTT+TGG + chr3_1:68901677-68901696 None:intergenic 60.0%
CGCTGCTCTCACCATGGCTT+TGG - chr3_1:68901801-68901820 Msa0371010:CDS 60.0%
GCTCCTGAAGAACGTGCTCG+TGG - chr3_1:68901871-68901890 Msa0371010:CDS 60.0%
AGGCATAGGACCATCGGCAC+CGG + chr3_1:68902037-68902056 None:intergenic 60.0%
GGTCGTGGAACAGTTGCCAC+CGG - chr3_1:68902655-68902674 Msa0371010:intron 60.0%
GAGCACTACAGTGACCGGAG+TGG - chr3_1:68902744-68902763 Msa0371010:intron 60.0%
TGGAGGAAGGGGTGAGGTGG+AGG + chr3_1:68901657-68901676 None:intergenic 65.0%
GAAAGGGGAGGAGCGAGTGG+TGG + chr3_1:68901686-68901705 None:intergenic 65.0%
GGTGAAAGGGGAGGAGCGAG+TGG + chr3_1:68901689-68901708 None:intergenic 65.0%
CGAATTTGCCACGGGCGGCA+CGG + chr3_1:68901714-68901733 None:intergenic 65.0%
GCGCTCGAATTTGCCACGGG+CGG + chr3_1:68901719-68901738 None:intergenic 65.0%
ACCATCGGCCACGTCGACCA+TGG - chr3_1:68901763-68901782 Msa0371010:CDS 65.0%
! CTCGTTGTCTCCGGTGCCGA+TGG - chr3_1:68902024-68902043 Msa0371010:CDS 65.0%
GGAGGGAAGACCGTTGGAGC+TGG - chr3_1:68903141-68903160 Msa0371010:CDS 65.0%
TGGAGGAAGGGGTGAGGTGG+AGG + chr3_1:68901657-68901676 None:intergenic 65.0%
GAAAGGGGAGGAGCGAGTGG+TGG + chr3_1:68901686-68901705 None:intergenic 65.0%
GGTGAAAGGGGAGGAGCGAG+TGG + chr3_1:68901689-68901708 None:intergenic 65.0%
CGAATTTGCCACGGGCGGCA+CGG + chr3_1:68901714-68901733 None:intergenic 65.0%
GCGCTCGAATTTGCCACGGG+CGG + chr3_1:68901719-68901738 None:intergenic 65.0%
ACCATCGGCCACGTCGACCA+TGG - chr3_1:68901763-68901782 Msa0371010:CDS 65.0%
! CTCGTTGTCTCCGGTGCCGA+TGG - chr3_1:68902024-68902043 Msa0371010:CDS 65.0%
GGAGGGAAGACCGTTGGAGC+TGG - chr3_1:68903141-68903160 Msa0371010:CDS 65.0%
GGGGAGGAGCGAGTGGTGGT+TGG + chr3_1:68901682-68901701 None:intergenic 70.0%
GGCACGGACGGTGAAAGGGG+AGG + chr3_1:68901698-68901717 None:intergenic 70.0%
GGCGGCACGGACGGTGAAAG+GGG + chr3_1:68901701-68901720 None:intergenic 70.0%
GGGCGGCACGGACGGTGAAA+GGG + chr3_1:68901702-68901721 None:intergenic 70.0%
TTTGCCACGGGCGGCACGGA+CGG + chr3_1:68901710-68901729 None:intergenic 70.0%
GCCATGGTCGACGTGGCCGA+TGG + chr3_1:68901767-68901786 None:intergenic 70.0%
GGGGAGGAGCGAGTGGTGGT+TGG + chr3_1:68901682-68901701 None:intergenic 70.0%
GGCACGGACGGTGAAAGGGG+AGG + chr3_1:68901698-68901717 None:intergenic 70.0%
GGCGGCACGGACGGTGAAAG+GGG + chr3_1:68901701-68901720 None:intergenic 70.0%
GGGCGGCACGGACGGTGAAA+GGG + chr3_1:68901702-68901721 None:intergenic 70.0%
TTTGCCACGGGCGGCACGGA+CGG + chr3_1:68901710-68901729 None:intergenic 70.0%
GCCATGGTCGACGTGGCCGA+TGG + chr3_1:68901767-68901786 None:intergenic 70.0%
CGGGCGGCACGGACGGTGAA+AGG + chr3_1:68901703-68901722 None:intergenic 75.0%
TTCACCGTCCGTGCCGCCCG+TGG - chr3_1:68901703-68901722 Msa0371010:CDS 75.0%
CGGGCGGCACGGACGGTGAA+AGG + chr3_1:68901703-68901722 None:intergenic 75.0%
TTCACCGTCCGTGCCGCCCG+TGG - chr3_1:68901703-68901722 Msa0371010:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 68901246 68903644 68901246 ID=Msa0371010;Name=Msa0371010
chr3_1 mRNA 68901246 68903644 68901246 ID=Msa0371010-mRNA-1;Parent=Msa0371010;Name=Msa0371010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=238|1|1|1|1|1|2|456|486
chr3_1 exon 68901246 68902556 68901246 ID=Msa0371010-mRNA-1:exon:14620;Parent=Msa0371010-mRNA-1
chr3_1 exon 68902801 68903644 68902801 ID=Msa0371010-mRNA-1:exon:14619;Parent=Msa0371010-mRNA-1
chr3_1 five_prime_UTR 68903407 68903644 68903407 ID=Msa0371010-mRNA-1:five_prime_utr;Parent=Msa0371010-mRNA-1
chr3_1 CDS 68902801 68903406 68902801 ID=Msa0371010-mRNA-1:cds;Parent=Msa0371010-mRNA-1
chr3_1 CDS 68901702 68902556 68901702 ID=Msa0371010-mRNA-1:cds;Parent=Msa0371010-mRNA-1
chr3_1 three_prime_UTR 68901246 68901701 68901246 ID=Msa0371010-mRNA-1:three_prime_utr;Parent=Msa0371010-mRNA-1
Gene Sequence

>Msa0371010

ATGGCAATTTCAATTTCTTCTTCATCTTCCACCAAACTCAAACTCTCACAACACCCACCACACACCCACACCTTCACCACTTCCGCTTCCATTTCCTCCCCTTCCACCAATCTCCGTCCCAAACTAACCCTAACTCGCCTCTCTTCCTCCTTCCTCAACCCCTCCACAATCCTCCACCTCACCCCTTCCTCCAAACCAACCACCACTCGCTCCTCCCCTTTCACCGTCCGTGCCGCCCGTGGCAAATTCGAGCGCAAAAAGCCTCATCTCAACATCGGAACCATCGGCCACGTCGACCATGGCAAAACCACTTTAACCGCTGCTCTCACCATGGCTTTGGCTTCTCTAGGTAACAGTGCCCCTAAAAAATACGATGAAATTGACGCTGCTCCTGAAGAACGTGCTCGTGGTATTACAATTAATACTGCTACTGTTGAATATGAGACTGAGACTCGTCATTATGCTCATGTTGATTGCCCCGGTCACGCTGATTATGTCAAAAATATGATTACTGGTGCTGCTCAGATGGACGGCGCTATTCTCGTTGTCTCCGGTGCCGATGGTCCTATGCCTCAAACCAAAGAACACATCCTTCTCGCTAAGCAGGTTGGTGTTCCGAGTGTGGTTGTGTTCTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGAGCTTGAAGTTCGGGAGCTACTCTCGTCTTACGAATTTCCTGGAGATGACATTCCGATTGTTTCTGGTTCAGCGCTATTGGCGTTGGAAGCATTAGTGGCAAACCCTACTATTAAACGTGGTGATAACGAGTGGGTGGATAAGATTTATAAACTTATGGATGAAGTTGACAACTATATACCAATCCCTCAAAGACAAACAGATCTCCCCTTTTTGCTAGCTATTGAGGATGTGTTTTCAATCACTGGTCGTGGAACAGTTGCCACCGGAAGAATTGAAAGGGGGCTTGTTAAGGTTGGTGATGTAGTTGACCTTGTTGGTTTGAGGGAAACGAGGAGCACTACAGTGACCGGAGTGGAAATGTTTCAGAAGATTTTGGACGATGCTATGGCTGGTGATAACGTGGGTTTGTTGCTGAGAGGTGTTCAGAAGATTGATATTCAAAGAGGGATGGTTTTGGCTAAGCCTGGAACTATCACTCCTCACTCTAAGTTTGAATGTATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGAAGACATTCACCTTTCTTTGCTGGTTATAGGCCTCAGTTTTACATGAGAACCACAGATGTTACCGGAAAAGTTACATCTATCATGAATGACAAGGATGAGGAGTCGAAGATGGTGATGCCCGGTGATCGTGTTAAGATGGTGGTTGAACTCATTGTCCCTGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACCGTTGGAGCTGGTGTTATCGGAGCTATCATTGAGTGA
Protein sequence

>Msa0371010

MAISISSSSSTKLKLSQHPPHTHTFTTSASISSPSTNLRPKLTLTRLSSSFLNPSTILHLTPSSKPTTTRSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIVSGSALLALEALVANPTIKRGDNEWVDKIYKLMDEVDNYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRIERGLVKVGDVVDLVGLRETRSTTVTGVEMFQKILDDAMAGDNVGLLLRGVQKIDIQRGMVLAKPGTITPHSKFECIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE*