AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1066930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066930 MtrunA17_Chr7g0247911 99.254 268 2 0 1 268 1 268 0.0 541
Msa1066930 MtrunA17_Chr7g0247901 79.104 268 56 0 1 268 1 268 1.06e-152 426
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066930 AT2G45990.2 75.373 268 66 0 1 268 1 268 4.09e-146 410
Msa1066930 AT2G45990.1 75.373 268 66 0 1 268 1 268 4.09e-146 410
Msa1066930 AT2G45990.3 73.134 268 67 1 1 268 1 263 1.30e-138 391
Msa1066930 AT2G45990.4 75.238 210 52 0 1 210 1 210 2.84e-111 320

Find 147 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGGGTAAAATGGGAATTT+AGG 0.231166 7_2:-61105316 Msa1066930:three_prime_UTR
GGTTGTTTGGATTAGTGAAT+TGG 0.275984 7_2:-61107407 Msa1066930:intron
GTTGTTTGGATTAGTGAATT+GGG 0.276815 7_2:-61107406 Msa1066930:intron
TTTCTTCACTAGCATTTAAA+TGG 0.285988 7_2:+61106997 Msa1066940:three_prime_UTR
AGTGTCAGCCCTTGGTGTTC+TGG 0.287833 7_2:+61107738 None:intergenic
GATGATCTGATAGACCTATT+TGG 0.294461 7_2:-61108389 Msa1066930:CDS
CAATCAAGCCTTGTTGCATT+TGG 0.295464 7_2:+61107031 Msa1066940:three_prime_UTR
GCTTAAAGTTGAGGGTATAT+TGG 0.314406 7_2:-61108465 Msa1066930:CDS
CAGTCTATATTATTAACTTT+TGG 0.315316 7_2:-61107152 Msa1066930:three_prime_UTR
TTTACTTGTGAGGTTGTTGC+TGG 0.317554 7_2:-61108701 Msa1066930:CDS
AGACGCATATGAGATTAAAA+TGG 0.319206 7_2:+61106740 Msa1066940:CDS
GCTGTTGGAGTAAGGTTTAC+AGG 0.326560 7_2:+61106294 Msa1066940:CDS
GTGCGACCGGTGGTGGAAAC+TGG 0.328384 7_2:-61108736 Msa1066930:CDS
CGCCACACCGGACCTGTTAT+CGG 0.329665 7_2:+61105500 Msa1066940:CDS
TTCATCTAGGGATGGATCTC+CGG 0.333105 7_2:-61106784 Msa1066930:three_prime_UTR
TCTACCTGGGAGAATTTGTT+TGG 0.335150 7_2:+61107074 Msa1066940:three_prime_UTR
GAATACAATCATGTTCAATA+TGG 0.335159 7_2:+61106326 Msa1066940:CDS
CTCTATGCATTGGACTTTGA+TGG 0.336958 7_2:-61109230 Msa1066930:CDS
AGAATATATGGTCTAGGAAC+TGG 0.346676 7_2:-61107886 Msa1066930:CDS
ACTTCATGCAATTATGCCTT+TGG 0.348730 7_2:-61105207 Msa1066930:three_prime_UTR
TAAACAGCTTTGTGGAAGAT+AGG 0.349869 7_2:-61107614 Msa1066930:intron
GTTCAATATGGACAGCATTA+AGG 0.353323 7_2:+61106338 Msa1066940:CDS
CATCTCTGACCTTTCCAAAT+AGG 0.357874 7_2:+61108375 None:intergenic
AAGAACGTGTGTCCATTTCA+TGG 0.366661 7_2:-61106262 Msa1066930:three_prime_UTR
CTACCTGGGAGAATTTGTTT+GGG 0.370951 7_2:+61107075 Msa1066940:three_prime_UTR
TTAATAATATAGACTGGAAA+TGG 0.373223 7_2:+61107159 Msa1066940:three_prime_UTR
GCTTCTGAATGAGTTCATCT+AGG 0.380340 7_2:-61106797 Msa1066930:three_prime_UTR
GAATTTCCATCAACTTCCTC+TGG 0.384520 7_2:-61106855 Msa1066930:three_prime_UTR
CTGGTTGGATTCAAGGAAAC+AGG 0.385624 7_2:-61108331 Msa1066930:intron
TGCAATTATGCCTTTGGTTG+TGG 0.389999 7_2:-61105201 Msa1066930:three_prime_UTR
AAGAGCCAGAGTTGGATAAC+TGG 0.395774 7_2:-61107566 Msa1066930:CDS
TGGATTCATCCACAGAAGAT+TGG 0.401139 7_2:-61108982 Msa1066930:CDS
GACGCATATGAGATTAAAAT+GGG 0.401212 7_2:+61106741 Msa1066940:CDS
GATTTCGCTGGTTGGATTCA+AGG 0.403301 7_2:-61108338 Msa1066930:CDS
AAAACAGAATTATAGTTAAA+CGG 0.403540 7_2:+61106879 Msa1066940:exon
TTCTTCAGTGTTTCTACCTT+AGG 0.404727 7_2:+61107774 None:intergenic
AGCTTAACGAATCCGATAAC+AGG 0.407658 7_2:-61105512 Msa1066930:three_prime_UTR
ATGTCAGGTGCGACCGGTGG+TGG 0.413077 7_2:-61108743 Msa1066930:intron
GGTCCACATCACCGACGAAC+TGG 0.418590 7_2:+61105352 Msa1066940:CDS
TAGCTGAACTTGCCATGAAA+TGG 0.419180 7_2:+61106250 Msa1066940:CDS
TTCCATTCTTCCATGACAAT+GGG 0.419686 7_2:+61108422 None:intergenic
TTGAGATGGCCAGACTTGTT+TGG 0.420722 7_2:-61109010 Msa1066930:CDS
TTGGAAAGGTCAGAGATGAT+TGG 0.421615 7_2:-61108370 Msa1066930:CDS
TAATCTCATATGCGTCTGAT+TGG 0.422754 7_2:-61106734 Msa1066930:three_prime_UTR
TTAGGGAGATTAGAAGAAGA+AGG 0.432493 7_2:-61105298 Msa1066930:three_prime_UTR
GGATGATGATTGGAAGGAAT+GGG 0.434248 7_2:+61105397 Msa1066940:CDS
GATAACTGGAATTTGTATCT+AGG 0.438394 7_2:-61107552 Msa1066930:intron
TGAAAGGAAGAGTAGGAAAT+GGG 0.438936 7_2:-61109257 Msa1066930:exon
GGATTCGTTAAGCTCCGATT+TGG 0.439915 7_2:+61105521 Msa1066940:CDS
ATACCACCAGAGAGAATATA+TGG 0.441088 7_2:-61107898 Msa1066930:CDS
GAACCGGAGCTGTTGGAGTA+AGG 0.443973 7_2:+61106286 Msa1066940:CDS
GAGGGTAAAATGGGAATTTA+GGG 0.444967 7_2:-61105315 Msa1066930:three_prime_UTR
GATCTTCGATTCATCCATCT+TGG 0.447981 7_2:-61105459 Msa1066930:three_prime_UTR
TTGTTTATGTATAAATAAGA+TGG 0.448122 7_2:+61107245 Msa1066940:three_prime_UTR
GAGATCAATAAGCTGAATCC+TGG 0.454047 7_2:+61107341 Msa1066940:three_prime_UTR
GCTTTACTTAGAGAACTTGC+TGG 0.454086 7_2:-61107928 Msa1066930:CDS
GTACATTGTCACCACAAAAC+AGG 0.454170 7_2:-61108085 Msa1066930:intron
TCCACACTGCCAAACAAGTC+TGG 0.458820 7_2:+61109001 None:intergenic
AGGATGATGATTGGAAGGAA+TGG 0.465789 7_2:+61105396 Msa1066940:CDS
TTGTTTGGATTAGTGAATTG+GGG 0.466909 7_2:-61107405 Msa1066930:intron
CCTAGACCATATATTCTCTC+TGG 0.470653 7_2:+61107892 None:intergenic
TCCATCTTGGTTAAATCAGC+GGG 0.470952 7_2:-61105446 Msa1066930:three_prime_UTR
TTGAAAGGAAGAGTAGGAAA+TGG 0.477320 7_2:-61109258 Msa1066930:exon
TCAGTAGCAAGCTGAAATGA+TGG 0.478850 7_2:-61107311 Msa1066930:exon
ACGATGAGGAGGATGATGAT+TGG 0.481020 7_2:+61105387 Msa1066940:CDS
TATGGACAGCATTAAGGACT+TGG 0.481375 7_2:+61106344 Msa1066940:CDS
TAGGGAGATTAGAAGAAGAA+GGG 0.482523 7_2:-61105297 Msa1066930:three_prime_UTR
GCTAGTCCAGAGGAAGTTGA+TGG 0.484655 7_2:+61106849 Msa1066940:CDS
TGGACACACGTTCTTAGAAC+CGG 0.492589 7_2:+61106270 Msa1066940:CDS
ATTCCATTCTTCCATGACAA+TGG 0.501028 7_2:+61108421 None:intergenic
TCATCTAGGGATGGATCTCC+GGG 0.510429 7_2:-61106783 Msa1066930:three_prime_UTR
TGGAGAACGATTTCGCTGGT+TGG 0.513694 7_2:-61108346 Msa1066930:CDS
TTGAGGGTATATTGGAGGAC+TGG 0.519493 7_2:-61108457 Msa1066930:CDS
TAAATCAGCGGGAGTGAAAG+AGG 0.519565 7_2:-61105435 Msa1066930:three_prime_UTR
CTTCTGAATGAGTTCATCTA+GGG 0.521992 7_2:-61106796 Msa1066930:three_prime_UTR
TGCTTTATCTCAACGTCTAG+AGG 0.522037 7_2:-61106914 Msa1066930:three_prime_UTR
GCCAGACTTGTTTGGCAGTG+TGG 0.523053 7_2:-61109002 Msa1066930:CDS
GAGTCCGGCGAACACCAAAT+CGG 0.524019 7_2:-61105535 Msa1066930:three_prime_UTR
GTTCTTAGAACCGGAGCTGT+TGG 0.528500 7_2:+61106279 Msa1066940:CDS
TCATATCCAGTTTCCACCAC+CGG 0.529897 7_2:+61108730 None:intergenic
TCCCGCTGATTTAACCAAGA+TGG 0.531039 7_2:+61105445 Msa1066940:CDS
TCTTAATGCATCAGCAACAC+CGG 0.532884 7_2:+61108125 None:intergenic
ATGAAGCAGCAGCCAACCCC+AGG 0.535732 7_2:-61107359 Msa1066930:CDS
TAAAGTTGAGGGTATATTGG+AGG 0.535863 7_2:-61108462 Msa1066930:CDS
AGCCCATTGTCATGGAAGAA+TGG 0.536844 7_2:-61108424 Msa1066930:CDS
ACTCACTGATGACTTTCTGA+TGG 0.538468 7_2:+61108663 None:intergenic
AATGGGGCATCTCTATGCAT+TGG 0.539644 7_2:-61109240 Msa1066930:CDS
TTCTTCTGAAAGGTGGCAGA+GGG 0.540584 7_2:-61108488 Msa1066930:intron
TATGATATATTAAGATTGCA+TGG 0.541928 7_2:+61109302 None:intergenic
CAAATTGAAGCCCATTGTCA+TGG 0.542285 7_2:-61108432 Msa1066930:CDS
AGATCAATAAGCTGAATCCT+GGG 0.543296 7_2:+61107342 Msa1066940:three_prime_UTR
AGCTCCGATTTGGTGTTCGC+CGG 0.544891 7_2:+61105531 Msa1066940:CDS
AAAGGTCAGAGATGATTGGT+TGG 0.546720 7_2:-61108366 Msa1066930:CDS
TGAGGAGGATGATGATTGGA+AGG 0.548357 7_2:+61105391 Msa1066940:CDS
AAATTCCAGTTATCCAACTC+TGG 0.551915 7_2:+61107561 None:intergenic
AACGAATCCGATAACAGGTC+CGG 0.554193 7_2:-61105507 Msa1066930:three_prime_UTR
GGCAGAGGGGCTTAAAGTTG+AGG 0.554476 7_2:-61108474 Msa1066930:CDS
TGCAGGCTGCTAAGTTGAGA+TGG 0.554505 7_2:-61109024 Msa1066930:intron
GTAACATTGAAAGGAAGAGT+AGG 0.555358 7_2:-61109264 Msa1066930:five_prime_UTR
TACCCTCGCCGGAAAACGCA+AGG 0.556070 7_2:+61105331 Msa1066940:CDS
AAACCTTACTCCAACAGCTC+CGG 0.559785 7_2:-61106289 Msa1066930:three_prime_UTR
TTCATGTCAGGTGCGACCGG+TGG 0.564118 7_2:-61108746 Msa1066930:intron
CGTCCAGTTCGTCGGTGATG+TGG 0.565416 7_2:-61105355 Msa1066930:three_prime_UTR
ACTGATGACTTTCTGATGGA+AGG 0.565784 7_2:+61108667 None:intergenic
TTCCCCAAACAAATTCTCCC+AGG 0.568712 7_2:-61107078 Msa1066930:three_prime_UTR
TTAACTGTAGTGTCAGCCCT+TGG 0.569163 7_2:+61107730 None:intergenic
CAAAAGTTAATAATATAGAC+TGG 0.569675 7_2:+61107153 Msa1066940:three_prime_UTR
CAGCATTAAGGACTTGGAAG+AGG 0.572902 7_2:+61106350 Msa1066940:CDS
GACAGCTATCTCAGCTCTCA+AGG 0.573429 7_2:-61109183 Msa1066930:intron
GCAGAGGGGCTTAAAGTTGA+GGG 0.574411 7_2:-61108473 Msa1066930:CDS
TACCTGGGAGAATTTGTTTG+GGG 0.574780 7_2:+61107076 Msa1066940:three_prime_UTR
TTCAACAATCCAATCTTCTG+TGG 0.576144 7_2:+61108973 None:intergenic
CCAGAGAGAATATATGGTCT+AGG 0.578822 7_2:-61107892 Msa1066930:CDS
GAATATATGGTCTAGGAACT+GGG 0.583865 7_2:-61107885 Msa1066930:intron
TGTCATCAAAGAGCCAGAGT+TGG 0.584073 7_2:-61107574 Msa1066930:CDS
TACTCTTGCCAAATGCAACA+AGG 0.584301 7_2:-61107039 Msa1066930:three_prime_UTR
TAAGAGAATACACTTCTACC+TGG 0.584708 7_2:+61107060 Msa1066940:three_prime_UTR
ATCCATCTTGGTTAAATCAG+CGG 0.590655 7_2:-61105447 Msa1066930:three_prime_UTR
TGTAATAATAGAAATTCTCA+AGG 0.593072 7_2:+61107214 Msa1066940:three_prime_UTR
GTTCTTCTGAAAGGTGGCAG+AGG 0.593902 7_2:-61108489 Msa1066930:intron
AATAAGCTGAATCCTGGGGT+TGG 0.595384 7_2:+61107347 Msa1066940:three_prime_UTR
AAGAGAATACACTTCTACCT+GGG 0.598107 7_2:+61107061 Msa1066940:three_prime_UTR
GATGATGATTGGAAGGAATG+GGG 0.598286 7_2:+61105398 Msa1066940:CDS
CTTAATGCATCAGCAACACC+GGG 0.599753 7_2:+61108126 None:intergenic
AAGTTCTCTAAGTAAAGCAT+CGG 0.602912 7_2:+61107933 None:intergenic
TGTTTGGATTAGTGAATTGG+GGG 0.603046 7_2:-61107404 Msa1066930:intron
TGAATGAGTTCATCTAGGGA+TGG 0.611085 7_2:-61106792 Msa1066930:three_prime_UTR
CAAAGACACGCCACAACCAA+AGG 0.612425 7_2:+61105191 None:intergenic
CGCATATGAGATTAAAATGG+GGG 0.612833 7_2:+61106743 Msa1066940:CDS
TGGTTGGAGAACGATTTCGC+TGG 0.613350 7_2:-61108350 Msa1066930:CDS
AGCAGATAATGCTAGTCCAG+AGG 0.613968 7_2:+61106839 Msa1066940:CDS
TCTGATAGACCTATTTGGAA+AGG 0.618657 7_2:-61108384 Msa1066930:CDS
TTTACCTCTAGATTCTATCC+CGG 0.630404 7_2:-61108144 Msa1066930:intron
GGACGACGTGTTCGACGATG+AGG 0.631613 7_2:+61105373 Msa1066940:CDS
AGACCATATATTCTCTCTGG+TGG 0.638617 7_2:+61107895 None:intergenic
CGACGTGTTCGACGATGAGG+AGG 0.640320 7_2:+61105376 Msa1066940:CDS
AAATCAGCGGGAGTGAAAGA+GGG 0.642642 7_2:-61105434 Msa1066930:three_prime_UTR
GAACACGTCGTCCAGTTCGT+CGG 0.646781 7_2:-61105363 Msa1066930:three_prime_UTR
GCGGGAGTGAAAGAGGGTGA+AGG 0.647627 7_2:-61105428 Msa1066930:three_prime_UTR
GAGATGATGAAACGCCACAC+CGG 0.658134 7_2:+61105488 Msa1066940:CDS
ATCCGATAACAGGTCCGGTG+TGG 0.660427 7_2:-61105502 Msa1066930:three_prime_UTR
GATCAATAAGCTGAATCCTG+GGG 0.681696 7_2:+61107343 Msa1066940:three_prime_UTR
GGATGAATCGAAGATCAAAG+AGG 0.685829 7_2:+61105466 Msa1066940:CDS
GGAGTTCTCTGTGATACATG+TGG 0.686150 7_2:-61109209 Msa1066930:CDS
GAAAGGAAGAGTAGGAAATG+GGG 0.694887 7_2:-61109256 Msa1066930:exon
ACGCATATGAGATTAAAATG+GGG 0.696898 7_2:+61106742 Msa1066940:CDS
TCTTCTGAAAGGTGGCAGAG+GGG 0.709844 7_2:-61108487 Msa1066930:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATATCATATTTTGAT+TGG - chr7_2:61105201-61105220 Msa1066930:three_prime_UTR 10.0%
!! TAATTAATAATTGTTAAACT+TGG - chr7_2:61107065-61107084 Msa1066930:three_prime_UTR 10.0%
!! AACTTAAATTAAGAAAAAAA+AGG - chr7_2:61108857-61108876 Msa1066930:intron 10.0%
!!! GTTGTCAAATAATTAATTTT+TGG - chr7_2:61106322-61106341 Msa1066930:three_prime_UTR 15.0%
!!! AGTATTGCTATTTTTTTATT+TGG - chr7_2:61106633-61106652 Msa1066930:intron 15.0%
!! TTGTTTATGTATAAATAAGA+TGG + chr7_2:61107251-61107270 Msa1066940:three_prime_UTR 15.0%
!!! AATTGTATCACTTTTTTAAA+CGG + chr7_2:61107560-61107579 None:intergenic 15.0%
!! AAAACAGAATTATAGTTAAA+CGG + chr7_2:61107617-61107636 None:intergenic 15.0%
!! TCGAAAAAAAAATGTAAAAA+TGG - chr7_2:61108108-61108127 Msa1066930:CDS 15.0%
!! TATGATATATTAAGATTGCA+TGG + chr7_2:61105194-61105213 None:intergenic 20.0%
!!! TATCATATTTTGATTGGTTT+TGG - chr7_2:61105207-61105226 Msa1066930:three_prime_UTR 20.0%
!! GTATAAAACTATAAACCATA+TGG - chr7_2:61105851-61105870 Msa1066930:intron 20.0%
!!! TTGCTTTTGATTTTTTATCA+TGG - chr7_2:61105898-61105917 Msa1066930:intron 20.0%
!! ATTAATTATTTGACAACACT+TGG + chr7_2:61106319-61106338 Msa1066940:CDS 20.0%
!! TATTACATGTTAAGATGATT+TGG - chr7_2:61106833-61106852 Msa1066930:three_prime_UTR 20.0%
!! ATTACATGTTAAGATGATTT+GGG - chr7_2:61106834-61106853 Msa1066930:three_prime_UTR 20.0%
!! TGTAATAATAGAAATTCTCA+AGG + chr7_2:61107282-61107301 Msa1066940:three_prime_UTR 20.0%
!! TTAATAATATAGACTGGAAA+TGG + chr7_2:61107337-61107356 Msa1066940:three_prime_UTR 20.0%
!! CAAAAGTTAATAATATAGAC+TGG + chr7_2:61107343-61107362 Msa1066940:three_prime_UTR 20.0%
!!! CAGTCTATATTATTAACTTT+TGG - chr7_2:61107341-61107360 Msa1066930:CDS 20.0%
!! ATCGTAAAAATAATAACAGT+AGG - chr7_2:61107528-61107547 Msa1066930:intron 20.0%
!!! TGATTTATGATAAGACATTT+TGG + chr7_2:61108048-61108067 None:intergenic 20.0%
!!! AATTTTTCGTGTTTGATTTT+AGG + chr7_2:61108275-61108294 None:intergenic 20.0%
!! TACTTCATTTAATCTTTCAA+CGG - chr7_2:61108395-61108414 Msa1066930:CDS 20.0%
!!! ATACTCTTTTTAGTACTTAT+TGG + chr7_2:61108502-61108521 None:intergenic 20.0%
!! ATAACAAGATAAAAACTATG+AGG - chr7_2:61108562-61108581 Msa1066930:intron 20.0%
!! ATAACAAAAAACTCAGTAAA+AGG - chr7_2:61108658-61108677 Msa1066930:intron 20.0%
!! TAACAAAAAACTCAGTAAAA+GGG - chr7_2:61108659-61108678 Msa1066930:intron 20.0%
!!! TTTTACTTGTTATGAATGAT+GGG + chr7_2:61108826-61108845 None:intergenic 20.0%
!!! TTTTTACTTGTTATGAATGA+TGG + chr7_2:61108827-61108846 None:intergenic 20.0%
!!! TGATTATTACTATTTTTTGC+TGG + chr7_2:61108904-61108923 None:intergenic 20.0%
!!! GTTGTTTTCTTGCATTTTAT+TGG + chr7_2:61105350-61105369 Msa1066940:CDS 25.0%
!!! TATGGTTTTGGACATTTTTT+TGG - chr7_2:61105411-61105430 Msa1066930:three_prime_UTR 25.0%
!! TATATTGTTTGATGATTTGC+AGG - chr7_2:61105452-61105471 Msa1066930:three_prime_UTR 25.0%
! AACACAGTTAAACTCTAATT+TGG + chr7_2:61105639-61105658 Msa1066940:intron 25.0%
! AAATTAGAGTTTAACTGTGT+TGG - chr7_2:61105638-61105657 Msa1066930:intron 25.0%
!!! AACTTAAGTTTTTTCATGTC+AGG - chr7_2:61105735-61105754 Msa1066930:intron 25.0%
!! CCAAAAAATTTAAAGCCATA+TGG + chr7_2:61105869-61105888 Msa1066940:intron 25.0%
!!! CCATATGGCTTTAAATTTTT+TGG - chr7_2:61105866-61105885 Msa1066930:intron 25.0%
! AACATTATCATCAGATTCTA+AGG - chr7_2:61105940-61105959 Msa1066930:intron 25.0%
!! CAATATATGTAGGACTTTTA+GGG + chr7_2:61106472-61106491 Msa1066940:intron 25.0%
!! TCAATATATGTAGGACTTTT+AGG + chr7_2:61106473-61106492 Msa1066940:intron 25.0%
! AAAGTGCATAGAAAATTCAA+AGG + chr7_2:61106508-61106527 Msa1066940:intron 25.0%
!! GTTAATTTTAAACAGCTTTG+TGG - chr7_2:61106871-61106890 Msa1066930:three_prime_UTR 25.0%
!!! CTCTTTGATGACATTTTTAA+GGG + chr7_2:61106912-61106931 Msa1066940:three_prime_UTR 25.0%
! TTTGCACTATTTGTGATTAT+TGG - chr7_2:61107032-61107051 Msa1066930:three_prime_UTR 25.0%
! AATTGTTAAACTTGGTTGTT+TGG - chr7_2:61107073-61107092 Msa1066930:three_prime_UTR 25.0%
! TTTCTTCACTAGCATTTAAA+TGG + chr7_2:61107499-61107518 None:intergenic 25.0%
! TTTATATTATGTTCTTCACC+TGG + chr7_2:61107967-61107986 None:intergenic 25.0%
! ATCAAAATCTTTCACAAACT+AGG - chr7_2:61107990-61108009 Msa1066930:intron 25.0%
! GAATACAATCATGTTCAATA+TGG + chr7_2:61108170-61108189 None:intergenic 25.0%
! AGATTAAATGAAGTAACAAG+AGG + chr7_2:61108390-61108409 None:intergenic 25.0%
! ACTTCATTTAATCTTTCAAC+GGG - chr7_2:61108396-61108415 Msa1066930:CDS 25.0%
! AAAGTTGAATTTATCCACTT+TGG - chr7_2:61108586-61108605 Msa1066930:intron 25.0%
! AAGTTGAATTTATCCACTTT+GGG - chr7_2:61108587-61108606 Msa1066930:intron 25.0%
! GTTTATGCTAATTTCCAAAT+TGG + chr7_2:61108622-61108641 None:intergenic 25.0%
! ATAAAAAAACTAGCTCCAAT+TGG + chr7_2:61108702-61108721 None:intergenic 25.0%
! TCAACTCAAATTACAAAATG+TGG - chr7_2:61108929-61108948 Msa1066930:intron 25.0%
! AAATTACAAAATGTGGTTAC+CGG - chr7_2:61108936-61108955 Msa1066930:intron 25.0%
!!! TTGGTTTTGGTAACATTGAA+AGG - chr7_2:61105220-61105239 Msa1066930:three_prime_UTR 30.0%
TGATCACATTCAGTTTCATA+TGG - chr7_2:61105393-61105412 Msa1066930:three_prime_UTR 30.0%
! CATTCAGTTTCATATGGTTT+TGG - chr7_2:61105399-61105418 Msa1066930:three_prime_UTR 30.0%
! ATGAAACTCTTTTACTTGTG+AGG - chr7_2:61105782-61105801 Msa1066930:intron 30.0%
! TAGAAAATTCAAAGGCACAA+GGG + chr7_2:61106500-61106519 Msa1066940:intron 30.0%
! ATAGAAAATTCAAAGGCACA+AGG + chr7_2:61106501-61106520 Msa1066940:intron 30.0%
AAGTTCTCTAAGTAAAGCAT+CGG + chr7_2:61106563-61106582 Msa1066940:intron 30.0%
CAAAAAAGACAAGATGGTTT+GGG + chr7_2:61106691-61106710 Msa1066940:intron 30.0%
TGAAACCAAAAAAGACAAGA+TGG + chr7_2:61106697-61106716 Msa1066940:intron 30.0%
! TAAGATTCTTTTGCATCTAG+AGG - chr7_2:61106783-61106802 Msa1066930:three_prime_UTR 30.0%
!! GCTCTTTGATGACATTTTTA+AGG + chr7_2:61106913-61106932 Msa1066940:three_prime_UTR 30.0%
GATAACTGGAATTTGTATCT+AGG - chr7_2:61106941-61106960 Msa1066930:three_prime_UTR 30.0%
!! GTTGTTTGGATTAGTGAATT+GGG - chr7_2:61107087-61107106 Msa1066930:three_prime_UTR 30.0%
!! TTGTTTGGATTAGTGAATTG+GGG - chr7_2:61107088-61107107 Msa1066930:three_prime_UTR 30.0%
! AACTTTTGGCAATGATAATC+TGG - chr7_2:61107355-61107374 Msa1066930:CDS 30.0%
ACGCATATGAGATTAAAATG+GGG + chr7_2:61107754-61107773 None:intergenic 30.0%
GACGCATATGAGATTAAAAT+GGG + chr7_2:61107755-61107774 None:intergenic 30.0%
AGACGCATATGAGATTAAAA+TGG + chr7_2:61107756-61107775 None:intergenic 30.0%
ACAAAATTACTACTTCCTCT+AGG - chr7_2:61107862-61107881 Msa1066930:intron 30.0%
TATCTTTATATTCAGCCTAG+AGG + chr7_2:61107880-61107899 None:intergenic 30.0%
CGATCATAAAGAACTAAGAA+TGG + chr7_2:61108091-61108110 None:intergenic 30.0%
TCAAACACGAAAAATTGCAA+TGG - chr7_2:61108279-61108298 Msa1066930:intron 30.0%
!!! TACTGTTTTTTGAAGTAGAG+AGG + chr7_2:61108329-61108348 None:intergenic 30.0%
GTAACATTGAAAGGAAGAGT+AGG - chr7_2:61105229-61105248 Msa1066930:three_prime_UTR 35.0%
TTGAAAGGAAGAGTAGGAAA+TGG - chr7_2:61105235-61105254 Msa1066930:three_prime_UTR 35.0%
TGAAAGGAAGAGTAGGAAAT+GGG - chr7_2:61105236-61105255 Msa1066930:three_prime_UTR 35.0%
! TTGCATTTTATTGGTGAGAG+AGG + chr7_2:61105341-61105360 Msa1066940:CDS 35.0%
TTCAACAATCCAATCTTCTG+TGG + chr7_2:61105523-61105542 Msa1066940:CDS 35.0%
!! ACAATCTTGAATTTGCTAGC+AGG - chr7_2:61105687-61105706 Msa1066930:intron 35.0%
GAACTATGTCATCAGTCAAA+TGG + chr7_2:61105988-61106007 Msa1066940:intron 35.0%
GATGACATAGTTCTTCTGAA+AGG - chr7_2:61105995-61106014 Msa1066930:intron 35.0%
! GCTTAAAGTTGAGGGTATAT+TGG - chr7_2:61106028-61106047 Msa1066930:intron 35.0%
! TAAAGTTGAGGGTATATTGG+AGG - chr7_2:61106031-61106050 Msa1066930:intron 35.0%
TTCCATTCTTCCATGACAAT+GGG + chr7_2:61106074-61106093 Msa1066940:intron 35.0%
ATTCCATTCTTCCATGACAA+TGG + chr7_2:61106075-61106094 Msa1066940:intron 35.0%
GATGATCTGATAGACCTATT+TGG - chr7_2:61106104-61106123 Msa1066930:intron 35.0%
TCTGATAGACCTATTTGGAA+AGG - chr7_2:61106109-61106128 Msa1066930:intron 35.0%
TGGTACTAAATCACATGTTG+CGG + chr7_2:61106299-61106318 Msa1066940:CDS 35.0%
TTTACCTCTAGATTCTATCC+CGG - chr7_2:61106349-61106368 Msa1066930:three_prime_UTR 35.0%
! AAGGGCATGTCAATATATGT+AGG + chr7_2:61106482-61106501 Msa1066940:intron 35.0%
CTATCCTTTCTATGGTTTCA+GGG - chr7_2:61106529-61106548 Msa1066930:intron 35.0%
ATACCACCAGAGAGAATATA+TGG - chr7_2:61106595-61106614 Msa1066930:intron 35.0%
AGAATATATGGTCTAGGAAC+TGG - chr7_2:61106607-61106626 Msa1066930:intron 35.0%
GAATATATGGTCTAGGAACT+GGG - chr7_2:61106608-61106627 Msa1066930:intron 35.0%
CCAAAAAAGACAAGATGGTT+TGG + chr7_2:61106692-61106711 Msa1066940:intron 35.0%
!!! CCAAACCATCTTGTCTTTTT+TGG - chr7_2:61106689-61106708 Msa1066930:intron 35.0%
!!! CTTTTTTGGTTTCAGTCCTA+AGG - chr7_2:61106703-61106722 Msa1066930:intron 35.0%
! TTCTTCAGTGTTTCTACCTT+AGG + chr7_2:61106722-61106741 Msa1066940:CDS 35.0%
AAAAAATGCCAGAACACCAA+GGG - chr7_2:61106747-61106766 Msa1066930:three_prime_UTR 35.0%
! ACATGTTAAGATGATTTGGG+AGG - chr7_2:61106837-61106856 Msa1066930:three_prime_UTR 35.0%
! TAAACAGCTTTGTGGAAGAT+AGG - chr7_2:61106879-61106898 Msa1066930:three_prime_UTR 35.0%
AAATTCCAGTTATCCAACTC+TGG + chr7_2:61106935-61106954 Msa1066940:three_prime_UTR 35.0%
!! GGTTGTTTGGATTAGTGAAT+TGG - chr7_2:61107086-61107105 Msa1066930:three_prime_UTR 35.0%
!! TGTTTGGATTAGTGAATTGG+GGG - chr7_2:61107089-61107108 Msa1066930:three_prime_UTR 35.0%
AGATCAATAAGCTGAATCCT+GGG + chr7_2:61107154-61107173 Msa1066940:three_prime_UTR 35.0%
AAGAGAATACACTTCTACCT+GGG + chr7_2:61107435-61107454 Msa1066940:three_prime_UTR 35.0%
TAAGAGAATACACTTCTACC+TGG + chr7_2:61107436-61107455 Msa1066940:three_prime_UTR 35.0%
CTTCTGAATGAGTTCATCTA+GGG - chr7_2:61107697-61107716 Msa1066930:intron 35.0%
CGCATATGAGATTAAAATGG+GGG + chr7_2:61107753-61107772 None:intergenic 35.0%
TAATCTCATATGCGTCTGAT+TGG - chr7_2:61107759-61107778 Msa1066930:CDS 35.0%
CTTATCATGTCAACAGTTGA+AGG + chr7_2:61107798-61107817 None:intergenic 35.0%
ACAGCAAGCAACATAAACTA+AGG - chr7_2:61107835-61107854 Msa1066930:intron 35.0%
ATGATGTTGGATTCTGATCA+AGG + chr7_2:61107937-61107956 None:intergenic 35.0%
AATCTTTCACAAACTAGGTG+AGG - chr7_2:61107995-61108014 Msa1066930:intron 35.0%
GTTCAATATGGACAGCATTA+AGG + chr7_2:61108158-61108177 None:intergenic 35.0%
!!! TCGTGTTTGATTTTAGGACA+AGG + chr7_2:61108269-61108288 None:intergenic 35.0%
!! TTTTGACATGTGCTTGTTGA+TGG + chr7_2:61108358-61108377 None:intergenic 35.0%
GCTGTCAAAGAAAAAGTCTA+GGG + chr7_2:61108525-61108544 None:intergenic 35.0%
TGCTGTCAAAGAAAAAGTCT+AGG + chr7_2:61108526-61108545 None:intergenic 35.0%
! CTTTTTCTTTGACAGCACAT+TGG - chr7_2:61108529-61108548 Msa1066930:intron 35.0%
ATCCATCTTGGTTAAATCAG+CGG - chr7_2:61109046-61109065 Msa1066930:intron 35.0%
GAGGGTAAAATGGGAATTTA+GGG - chr7_2:61109178-61109197 Msa1066930:intron 35.0%
TTAGGGAGATTAGAAGAAGA+AGG - chr7_2:61109195-61109214 Msa1066930:CDS 35.0%
TAGGGAGATTAGAAGAAGAA+GGG - chr7_2:61109196-61109215 Msa1066930:CDS 35.0%
ACTTCATGCAATTATGCCTT+TGG - chr7_2:61109286-61109305 Msa1066930:five_prime_UTR 35.0%
GAAAGGAAGAGTAGGAAATG+GGG - chr7_2:61105237-61105256 Msa1066930:three_prime_UTR 40.0%
CTCTATGCATTGGACTTTGA+TGG - chr7_2:61105263-61105282 Msa1066930:three_prime_UTR 40.0%
TGGATTCATCCACAGAAGAT+TGG - chr7_2:61105511-61105530 Msa1066930:three_prime_UTR 40.0%
TTTACTTGTGAGGTTGTTGC+TGG - chr7_2:61105792-61105811 Msa1066930:intron 40.0%
ACTGATGACTTTCTGATGGA+AGG + chr7_2:61105829-61105848 Msa1066940:intron 40.0%
ACTCACTGATGACTTTCTGA+TGG + chr7_2:61105833-61105852 Msa1066940:intron 40.0%
! GACATAGTTCTTCTGAAAGG+TGG - chr7_2:61105998-61106017 Msa1066930:intron 40.0%
CAAATTGAAGCCCATTGTCA+TGG - chr7_2:61106061-61106080 Msa1066930:intron 40.0%
CATCTCTGACCTTTCCAAAT+AGG + chr7_2:61106121-61106140 Msa1066940:intron 40.0%
TTGGAAAGGTCAGAGATGAT+TGG - chr7_2:61106123-61106142 Msa1066930:intron 40.0%
AAAGGTCAGAGATGATTGGT+TGG - chr7_2:61106127-61106146 Msa1066930:intron 40.0%
CACATGTTGCGGAACAATAA+TGG + chr7_2:61106288-61106307 Msa1066940:CDS 40.0%
TCTTAATGCATCAGCAACAC+CGG + chr7_2:61106371-61106390 Msa1066940:intron 40.0%
GTACATTGTCACCACAAAAC+AGG - chr7_2:61106408-61106427 Msa1066930:intron 40.0%
AGGGTTATTGTCTTCATGCT+AGG + chr7_2:61106453-61106472 Msa1066940:intron 40.0%
GCACTTTCCTATCCTTTCTA+TGG - chr7_2:61106521-61106540 Msa1066930:intron 40.0%
CCTGAAACCATAGAAAGGAT+AGG + chr7_2:61106531-61106550 Msa1066940:intron 40.0%
CCTATCCTTTCTATGGTTTC+AGG - chr7_2:61106528-61106547 Msa1066930:intron 40.0%
GCTTTACTTAGAGAACTTGC+TGG - chr7_2:61106565-61106584 Msa1066930:intron 40.0%
AGACCATATATTCTCTCTGG+TGG + chr7_2:61106601-61106620 Msa1066940:intron 40.0%
CCTAGACCATATATTCTCTC+TGG + chr7_2:61106604-61106623 Msa1066940:intron 40.0%
CCAGAGAGAATATATGGTCT+AGG - chr7_2:61106601-61106620 Msa1066930:intron 40.0%
! TGGGAAATAGCAAAGGCATA+AGG + chr7_2:61106672-61106691 Msa1066940:intron 40.0%
! GATGGTTTGGGAAATAGCAA+AGG + chr7_2:61106679-61106698 Msa1066940:intron 40.0%
CAAAAAATGCCAGAACACCA+AGG - chr7_2:61106746-61106765 Msa1066930:three_prime_UTR 40.0%
GTTCAACACCCAAAAAGAGA+GGG - chr7_2:61107111-61107130 Msa1066930:three_prime_UTR 40.0%
! TGCTTCATCCCTCTCTTTTT+GGG + chr7_2:61107122-61107141 Msa1066940:three_prime_UTR 40.0%
GATCAATAAGCTGAATCCTG+GGG + chr7_2:61107153-61107172 Msa1066940:three_prime_UTR 40.0%
GAGATCAATAAGCTGAATCC+TGG + chr7_2:61107155-61107174 Msa1066940:three_prime_UTR 40.0%
TCAGTAGCAAGCTGAAATGA+TGG - chr7_2:61107182-61107201 Msa1066930:three_prime_UTR 40.0%
! TACCTGGGAGAATTTGTTTG+GGG + chr7_2:61107420-61107439 Msa1066940:three_prime_UTR 40.0%
! CTACCTGGGAGAATTTGTTT+GGG + chr7_2:61107421-61107440 Msa1066940:three_prime_UTR 40.0%
! TCTACCTGGGAGAATTTGTT+TGG + chr7_2:61107422-61107441 Msa1066940:three_prime_UTR 40.0%
TACTCTTGCCAAATGCAACA+AGG - chr7_2:61107454-61107473 Msa1066930:intron 40.0%
!! CAATCAAGCCTTGTTGCATT+TGG + chr7_2:61107465-61107484 None:intergenic 40.0%
TGCTTTATCTCAACGTCTAG+AGG - chr7_2:61107579-61107598 Msa1066930:CDS 40.0%
GAATTTCCATCAACTTCCTC+TGG - chr7_2:61107638-61107657 Msa1066930:intron 40.0%
GCTTCTGAATGAGTTCATCT+AGG - chr7_2:61107696-61107715 Msa1066930:intron 40.0%
TGAATGAGTTCATCTAGGGA+TGG - chr7_2:61107701-61107720 Msa1066930:intron 40.0%
TATGGACAGCATTAAGGACT+TGG + chr7_2:61108152-61108171 None:intergenic 40.0%
AAGAACGTGTGTCCATTTCA+TGG - chr7_2:61108231-61108250 Msa1066930:intron 40.0%
TAGCTGAACTTGCCATGAAA+TGG + chr7_2:61108246-61108265 None:intergenic 40.0%
!! TGAAGTAACAAGAGGTGCTT+AGG + chr7_2:61108382-61108401 None:intergenic 40.0%
AAACCACAGCTTCAACCAAT+TGG - chr7_2:61108684-61108703 Msa1066930:CDS 40.0%
AGCTTAACGAATCCGATAAC+AGG - chr7_2:61108981-61109000 Msa1066930:CDS 40.0%
GGATGAATCGAAGATCAAAG+AGG + chr7_2:61109030-61109049 None:intergenic 40.0%
GATCTTCGATTCATCCATCT+TGG - chr7_2:61109034-61109053 Msa1066930:intron 40.0%
TCCATCTTGGTTAAATCAGC+GGG - chr7_2:61109047-61109066 Msa1066930:intron 40.0%
GATGATGATTGGAAGGAATG+GGG + chr7_2:61109098-61109117 None:intergenic 40.0%
GGATGATGATTGGAAGGAAT+GGG + chr7_2:61109099-61109118 None:intergenic 40.0%
AGGATGATGATTGGAAGGAA+TGG + chr7_2:61109100-61109119 None:intergenic 40.0%
CGAGGGTAAAATGGGAATTT+AGG - chr7_2:61109177-61109196 Msa1066930:intron 40.0%
TGCAATTATGCCTTTGGTTG+TGG - chr7_2:61109292-61109311 Msa1066930:five_prime_UTR 40.0%
! AATGGGGCATCTCTATGCAT+TGG - chr7_2:61105253-61105272 Msa1066930:three_prime_UTR 45.0%
GGAGTTCTCTGTGATACATG+TGG - chr7_2:61105284-61105303 Msa1066930:three_prime_UTR 45.0%
! TTGAGATGGCCAGACTTGTT+TGG - chr7_2:61105483-61105502 Msa1066930:three_prime_UTR 45.0%
TTCACCTCTAGCATAGTGCT+TGG + chr7_2:61105667-61105686 Msa1066940:intron 45.0%
! TTTTTCATGTCAGGTGCGAC+CGG - chr7_2:61105744-61105763 Msa1066930:intron 45.0%
TCATATCCAGTTTCCACCAC+CGG + chr7_2:61105766-61105785 Msa1066940:intron 45.0%
! TTCTTCTGAAAGGTGGCAGA+GGG - chr7_2:61106005-61106024 Msa1066930:intron 45.0%
! TTGAGGGTATATTGGAGGAC+TGG - chr7_2:61106036-61106055 Msa1066930:intron 45.0%
AGCCCATTGTCATGGAAGAA+TGG - chr7_2:61106069-61106088 Msa1066930:intron 45.0%
! GATTTCGCTGGTTGGATTCA+AGG - chr7_2:61106155-61106174 Msa1066930:intron 45.0%
CTGGTTGGATTCAAGGAAAC+AGG - chr7_2:61106162-61106181 Msa1066930:intron 45.0%
TCTACTGCGTTGTAACGCTA+TGG + chr7_2:61106254-61106273 Msa1066940:CDS 45.0%
AACACCGGGATAGAATCTAG+AGG + chr7_2:61106356-61106375 Msa1066940:intron 45.0%
CTTAATGCATCAGCAACACC+GGG + chr7_2:61106370-61106389 Msa1066940:intron 45.0%
! GAGAAGTCAGACCTGTTTTG+TGG + chr7_2:61106422-61106441 Msa1066940:intron 45.0%
TTAACTGTAGTGTCAGCCCT+TGG + chr7_2:61106766-61106785 Msa1066940:CDS 45.0%
TGTCATCAAAGAGCCAGAGT+TGG - chr7_2:61106919-61106938 Msa1066930:three_prime_UTR 45.0%
AAGAGCCAGAGTTGGATAAC+TGG - chr7_2:61106927-61106946 Msa1066930:three_prime_UTR 45.0%
GGTTCAACACCCAAAAAGAG+AGG - chr7_2:61107110-61107129 Msa1066930:three_prime_UTR 45.0%
! CTGCTTCATCCCTCTCTTTT+TGG + chr7_2:61107123-61107142 Msa1066940:three_prime_UTR 45.0%
AATAAGCTGAATCCTGGGGT+TGG + chr7_2:61107149-61107168 Msa1066940:three_prime_UTR 45.0%
TTCCCCAAACAAATTCTCCC+AGG - chr7_2:61107415-61107434 Msa1066930:intron 45.0%
AGCAGATAATGCTAGTCCAG+AGG + chr7_2:61107657-61107676 None:intergenic 45.0%
TTCATCTAGGGATGGATCTC+CGG - chr7_2:61107709-61107728 Msa1066930:intron 45.0%
!!! GAGCAACTTTTTCGAAGACC+CGG + chr7_2:61107731-61107750 None:intergenic 45.0%
TCCAACATCATTTGACAGCC+AGG - chr7_2:61107946-61107965 Msa1066930:CDS 45.0%
ACCTGGCTGTCAAATGATGT+TGG + chr7_2:61107950-61107969 None:intergenic 45.0%
CAGCATTAAGGACTTGGAAG+AGG + chr7_2:61108146-61108165 None:intergenic 45.0%
GCTGTTGGAGTAAGGTTTAC+AGG + chr7_2:61108202-61108221 None:intergenic 45.0%
AAACCTTACTCCAACAGCTC+CGG - chr7_2:61108204-61108223 Msa1066930:intron 45.0%
TGGACACACGTTCTTAGAAC+CGG + chr7_2:61108226-61108245 None:intergenic 45.0%
AAAATGTGGTTACCGGAGTC+CGG - chr7_2:61108943-61108962 Msa1066930:intron 45.0%
GGATTCGTTAAGCTCCGATT+TGG + chr7_2:61108975-61108994 None:intergenic 45.0%
AACGAATCCGATAACAGGTC+CGG - chr7_2:61108986-61109005 Msa1066930:CDS 45.0%
!! TCCCGCTGATTTAACCAAGA+TGG + chr7_2:61109051-61109070 None:intergenic 45.0%
TAAATCAGCGGGAGTGAAAG+AGG - chr7_2:61109058-61109077 Msa1066930:intron 45.0%
AAATCAGCGGGAGTGAAAGA+GGG - chr7_2:61109059-61109078 Msa1066930:intron 45.0%
TGAGGAGGATGATGATTGGA+AGG + chr7_2:61109105-61109124 None:intergenic 45.0%
ACGATGAGGAGGATGATGAT+TGG + chr7_2:61109109-61109128 None:intergenic 45.0%
! TTTTCCGGCGAGGGTAAAAT+GGG - chr7_2:61109169-61109188 Msa1066930:intron 45.0%
! AATTCCCATTTTACCCTCGC+CGG + chr7_2:61109176-61109195 None:intergenic 45.0%
!! AAAGTAAATAAATATAATTA+TGG - chr7_2:61105552-61105571 Msa1066930:intron 5.0%
GACAGCTATCTCAGCTCTCA+AGG - chr7_2:61105310-61105329 Msa1066930:three_prime_UTR 50.0%
! TGCAGGCTGCTAAGTTGAGA+TGG - chr7_2:61105469-61105488 Msa1066930:three_prime_UTR 50.0%
TCCACACTGCCAAACAAGTC+TGG + chr7_2:61105495-61105514 Msa1066940:CDS 50.0%
GTAGCCAAGCACTATGCTAG+AGG - chr7_2:61105660-61105679 Msa1066930:intron 50.0%
! GTTCTTCTGAAAGGTGGCAG+AGG - chr7_2:61106004-61106023 Msa1066930:intron 50.0%
! TCTTCTGAAAGGTGGCAGAG+GGG - chr7_2:61106006-61106025 Msa1066930:intron 50.0%
GCAGAGGGGCTTAAAGTTGA+GGG - chr7_2:61106020-61106039 Msa1066930:intron 50.0%
TGGTTGGAGAACGATTTCGC+TGG - chr7_2:61106143-61106162 Msa1066930:intron 50.0%
TGGAGAACGATTTCGCTGGT+TGG - chr7_2:61106147-61106166 Msa1066930:intron 50.0%
GCGACCCTGAAACCATAGAA+AGG + chr7_2:61106536-61106555 Msa1066940:intron 50.0%
GCTAGTCCAGAGGAAGTTGA+TGG + chr7_2:61107647-61107666 None:intergenic 50.0%
TCATCTAGGGATGGATCTCC+GGG - chr7_2:61107710-61107729 Msa1066930:intron 50.0%
! GGACTTGGAAGAGGTACGTA+CGG + chr7_2:61108137-61108156 None:intergenic 50.0%
GTTCTTAGAACCGGAGCTGT+TGG + chr7_2:61108217-61108236 None:intergenic 50.0%
TTGGGCGACACGATCCAATT+TGG - chr7_2:61108605-61108624 Msa1066930:intron 50.0%
GCTCCAATTGGTTGAAGCTG+TGG + chr7_2:61108690-61108709 None:intergenic 50.0%
GAGATGATGAAACGCCACAC+CGG + chr7_2:61109008-61109027 None:intergenic 50.0%
! GATGTGGACCTTGCGTTTTC+CGG - chr7_2:61109154-61109173 Msa1066930:intron 50.0%
! GTTTTCCGGCGAGGGTAAAA+TGG - chr7_2:61109168-61109187 Msa1066930:intron 50.0%
CAAAGACACGCCACAACCAA+AGG + chr7_2:61109305-61109324 None:intergenic 50.0%
! GCCAGACTTGTTTGGCAGTG+TGG - chr7_2:61105491-61105510 Msa1066930:three_prime_UTR 55.0%
GGCAGAGGGGCTTAAAGTTG+AGG - chr7_2:61106019-61106038 Msa1066930:intron 55.0%
!! AGTGTCAGCCCTTGGTGTTC+TGG + chr7_2:61106758-61106777 Msa1066940:CDS 55.0%
GAACCGGAGCTGTTGGAGTA+AGG + chr7_2:61108210-61108229 None:intergenic 55.0%
TTGGATCGTGTCGCCCAAAG+TGG + chr7_2:61108603-61108622 None:intergenic 55.0%
!! ATTTGGTGTTCGCCGGACTC+CGG + chr7_2:61108958-61108977 None:intergenic 55.0%
GAGTCCGGCGAACACCAAAT+CGG - chr7_2:61108958-61108977 Msa1066930:intron 55.0%
!! AGCTCCGATTTGGTGTTCGC+CGG + chr7_2:61108965-61108984 None:intergenic 55.0%
ATCCGATAACAGGTCCGGTG+TGG - chr7_2:61108991-61109010 Msa1066930:CDS 55.0%
GAACACGTCGTCCAGTTCGT+CGG - chr7_2:61109130-61109149 Msa1066930:intron 55.0%
TTCATGTCAGGTGCGACCGG+TGG - chr7_2:61105747-61105766 Msa1066930:intron 60.0%
ATGAAGCAGCAGCCAACCCC+AGG - chr7_2:61107134-61107153 Msa1066930:three_prime_UTR 60.0%
CGCCACACCGGACCTGTTAT+CGG + chr7_2:61108996-61109015 None:intergenic 60.0%
GCGGGAGTGAAAGAGGGTGA+AGG - chr7_2:61109065-61109084 Msa1066930:intron 60.0%
CGACGTGTTCGACGATGAGG+AGG + chr7_2:61109120-61109139 None:intergenic 60.0%
GGACGACGTGTTCGACGATG+AGG + chr7_2:61109123-61109142 None:intergenic 60.0%
CGTCCAGTTCGTCGGTGATG+TGG - chr7_2:61109138-61109157 Msa1066930:intron 60.0%
GGTCCACATCACCGACGAAC+TGG + chr7_2:61109144-61109163 None:intergenic 60.0%
! GACCTTGCGTTTTCCGGCGA+GGG - chr7_2:61109160-61109179 Msa1066930:intron 60.0%
TACCCTCGCCGGAAAACGCA+AGG + chr7_2:61109165-61109184 None:intergenic 60.0%
ATGTCAGGTGCGACCGGTGG+TGG - chr7_2:61105750-61105769 Msa1066930:intron 65.0%
!! GTGCGACCGGTGGTGGAAAC+TGG - chr7_2:61105757-61105776 Msa1066930:intron 65.0%
! GGACCTTGCGTTTTCCGGCG+AGG - chr7_2:61109159-61109178 Msa1066930:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 61105176 61109339 61105176 ID=Msa1066930;Name=Msa1066930
chr7_2 mRNA 61105176 61109339 61105176 ID=Msa1066930-mRNA-1;Parent=Msa1066930;Name=Msa1066930-mRNA-1;_AED=0.27;_eAED=0.27;_QI=78|1|1|1|0.8|0.72|11|1113|268
chr7_2 exon 61105176 61105554 61105176 ID=Msa1066930-mRNA-1:exon:12290;Parent=Msa1066930-mRNA-1
chr7_2 exon 61106238 61106371 61106238 ID=Msa1066930-mRNA-1:exon:12289;Parent=Msa1066930-mRNA-1
chr7_2 exon 61106714 61107414 61106714 ID=Msa1066930-mRNA-1:exon:12288;Parent=Msa1066930-mRNA-1
chr7_2 exon 61107553 61107629 61107553 ID=Msa1066930-mRNA-1:exon:12287;Parent=Msa1066930-mRNA-1
chr7_2 exon 61107735 61107797 61107735 ID=Msa1066930-mRNA-1:exon:12286;Parent=Msa1066930-mRNA-1
chr7_2 exon 61107886 61107965 61107886 ID=Msa1066930-mRNA-1:exon:12285;Parent=Msa1066930-mRNA-1
chr7_2 exon 61108086 61108155 61108086 ID=Msa1066930-mRNA-1:exon:12284;Parent=Msa1066930-mRNA-1
chr7_2 exon 61108332 61108498 61108332 ID=Msa1066930-mRNA-1:exon:12283;Parent=Msa1066930-mRNA-1
chr7_2 exon 61108669 61108758 61108669 ID=Msa1066930-mRNA-1:exon:12282;Parent=Msa1066930-mRNA-1
chr7_2 exon 61108961 61109041 61108961 ID=Msa1066930-mRNA-1:exon:12281;Parent=Msa1066930-mRNA-1
chr7_2 exon 61109184 61109339 61109184 ID=Msa1066930-mRNA-1:exon:12280;Parent=Msa1066930-mRNA-1
chr7_2 five_prime_UTR 61109262 61109339 61109262 ID=Msa1066930-mRNA-1:five_prime_utr;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61109184 61109261 61109184 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61108961 61109041 61108961 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61108669 61108758 61108669 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61108332 61108498 61108332 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61108086 61108155 61108086 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61107886 61107965 61107886 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61107735 61107797 61107735 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61107553 61107629 61107553 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 CDS 61107314 61107414 61107314 ID=Msa1066930-mRNA-1:cds;Parent=Msa1066930-mRNA-1
chr7_2 three_prime_UTR 61106714 61107313 61106714 ID=Msa1066930-mRNA-1:three_prime_utr;Parent=Msa1066930-mRNA-1
chr7_2 three_prime_UTR 61106238 61106371 61106238 ID=Msa1066930-mRNA-1:three_prime_utr;Parent=Msa1066930-mRNA-1
chr7_2 three_prime_UTR 61105176 61105554 61105176 ID=Msa1066930-mRNA-1:three_prime_utr;Parent=Msa1066930-mRNA-1
Gene Sequence

>Msa1066930

ATGGGGCATCTCTATGCATTGGACTTTGATGGAGTTCTCTGTGATACATGTGGAGAGACAGCTATCTCAGCTCTCAAGGCTGCTAAGTTGAGATGGCCAGACTTGTTTGGCAGTGTGGATTCATCCACAGAAGATTGGATTGTTGAACAGATGATTAAAGTGCGACCGGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTGTTGCTGGAGACAATAGTTCCTTCCATCAGAAAGTCATCAGTGGCAGAGGGGCTTAAAGTTGAGGGTATATTGGAGGACTGGTTCAAATTGAAGCCCATTGTCATGGAAGAATGGAATGAGAACAGAGATGATCTGATAGACCTATTTGGAAAGGTCAGAGATGATTGGTTGGAGAACGATTTCGCTGGTTGGATTCAAGGAAACAGATTCTATCCCGGTGTTGCTGATGCATTAAGATTTGCAAGCTCAAAAGTGTACATTGTCACCACAAAACAGGGTCGCTTTGCCGATGCTTTACTTAGAGAACTTGCTGGAATAACTATACCACCAGAGAGAATATATGGTCTAGGAACTGGTCCTAAGGTAGAAACACTGAAGAAGCTTCAAAAAATGCCAGAACACCAAGGGCTGACACTACACTTTGTGGAAGATAGGATTGCAGCCCTTAAAAATGTCATCAAAGAGCCAGAGTTGGATAACTGGAATTTGTATCTAGTGAATTGGGGGTTCAACACCCAAAAAGAGAGGGATGAAGCAGCAGCCAACCCCAGGATTCAGCTTATTGATCTCTCTGATTTCAGTAGCAAGCTGAAATGA

Protein sequence

>Msa1066930

MGHLYALDFDGVLCDTCGETAISALKAAKLRWPDLFGSVDSSTEDWIVEQMIKVRPVVETGYETLLLVRLLLETIVPSIRKSSVAEGLKVEGILEDWFKLKPIVMEEWNENRDDLIDLFGKVRDDWLENDFAGWIQGNRFYPGVADALRFASSKVYIVTTKQGRFADALLRELAGITIPPERIYGLGTGPKVETLKKLQKMPEHQGLTLHFVEDRIAALKNVIKEPELDNWNLYLVNWGFNTQKERDEAAANPRIQLIDLSDFSSKLK*