AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0517820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517820 MtrunA17_Chr3g0129661 99.419 172 1 0 1 172 1 172 2.67e-125 349
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517820 AT5G64040.1 71.023 176 42 4 1 172 1 171 4.42e-83 243
Msa0517820 AT5G64040.2 67.347 147 39 4 1 143 1 142 1.99e-58 181

Find 64 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTTGCTCTTGATTCTT+TGG 0.156495 3_4:-69548378 None:intergenic
GAGAAATGCTCTTGCTTTAT+TGG 0.157047 3_4:+69548406 Msa0517820:CDS
GCTGCATCACCAGGGGTTTC+AGG 0.166988 3_4:+69548308 Msa0517820:CDS
GCTCTTGATTCTTTGGCTTC+AGG 0.250361 3_4:-69548371 None:intergenic
ACCATTCATTACAGAAGATT+TGG 0.264682 3_4:+69550234 Msa0517820:CDS
GCTTGTAGCTATGCCATATC+TGG 0.309038 3_4:+69548248 Msa0517820:CDS
ATTAGGCATGCCTCTCCTTT+TGG 0.321597 3_4:+69550454 Msa0517820:three_prime_UTR
AACTTATTTGTTGCTTTACT+TGG 0.327510 3_4:+69550545 Msa0517820:three_prime_UTR
GTATAACTATATTATGGAAT+TGG 0.338714 3_4:-69550573 None:intergenic
GTGCCCTCTGCTGCATCACC+AGG 0.354143 3_4:+69548299 Msa0517820:CDS
CTTGTTGTATAACTATATTA+TGG 0.362427 3_4:-69550579 None:intergenic
GCCAGCATTGGCAGAAGAAT+TGG 0.362944 3_4:-69548462 None:intergenic
AGAGCATATACAGTGCAATT+TGG 0.365802 3_4:+69550048 Msa0517820:CDS
CCTTCTGTTTAGCAAGATCT+TGG 0.372726 3_4:-69550104 None:intergenic
AGATTGCATTGATTTCCTAT+TGG 0.400341 3_4:-69548061 None:intergenic
AGAGAACAAGATTTGCCAAT+AGG 0.418223 3_4:+69548046 None:intergenic
TGGCAACCAGTGAAATTCTC+AGG 0.421964 3_4:-69550084 None:intergenic
TCTTGCAAAGTTTGCTCCAC+TGG 0.422179 3_4:-69550028 None:intergenic
CTGAAACAGCAGTGGTGAAA+AGG 0.440735 3_4:-69548436 None:intergenic
TTGTGGTTGGCGTGTGGATA+AGG 0.447550 3_4:-69548086 None:intergenic
TCCAATTCTTCTGCCAATGC+TGG 0.447703 3_4:+69548461 Msa0517820:CDS
ACTTGTTGAGCCTTGATCAA+TGG 0.461753 3_4:-69548341 None:intergenic
ATTGAGCTCAGAACCAGATA+TGG 0.463519 3_4:-69548261 None:intergenic
TCCAAATCTTCTGTAATGAA+TGG 0.478789 3_4:-69550235 None:intergenic
GATAACTTGAAAGGAGATGT+AGG 0.496797 3_4:+69550638 Msa0517820:three_prime_UTR
AAGTTCCCTGAGAATTTCAC+TGG 0.504808 3_4:+69550078 Msa0517820:CDS
CTTATGTTGCAAGGAACAAA+GGG 0.505444 3_4:-69548121 None:intergenic
TGCCCTCTGCTGCATCACCA+GGG 0.515970 3_4:+69548300 Msa0517820:CDS
GACTCTAGAAGAGTACCAAA+AGG 0.517836 3_4:-69550469 None:intergenic
TGCAAAGTTTGCTCCACTGG+TGG 0.527812 3_4:-69550025 None:intergenic
TTCATCAATAACGCCAGCAT+TGG 0.528232 3_4:-69548474 None:intergenic
GCCCTCTGCTGCATCACCAG+GGG 0.536993 3_4:+69548301 Msa0517820:CDS
TGAAACAGCAGTGGTGAAAA+GGG 0.537677 3_4:-69548435 None:intergenic
GGAACTTGAATGTGAAGGAA+AGG 0.538060 3_4:+69550255 Msa0517820:CDS
ACTTATGTTGCAAGGAACAA+AGG 0.551246 3_4:-69548122 None:intergenic
CATTGCAGCCATGTGTATTG+TGG 0.551968 3_4:-69548210 None:intergenic
AAGAACATTGTTGTGAATCA+CGG 0.553508 3_4:+69550599 Msa0517820:three_prime_UTR
TATCAAGCTACCATTGATCA+AGG 0.554113 3_4:+69548331 Msa0517820:CDS
AGAACATTGTTGTGAATCAC+GGG 0.556350 3_4:+69550600 Msa0517820:three_prime_UTR
TTAAGTCAACTTATGTTGCA+AGG 0.560354 3_4:-69548130 None:intergenic
AATCAAGAGCAAGTGATGGA+AGG 0.560441 3_4:+69548384 Msa0517820:CDS
CTTCTAGAGTCTTGACTGTG+TGG 0.560442 3_4:+69550481 Msa0517820:three_prime_UTR
AACCCCTGGTGATGCAGCAG+AGG 0.560571 3_4:-69548303 None:intergenic
GAGTTCGAAGATAACTTGAA+AGG 0.574788 3_4:+69550629 Msa0517820:three_prime_UTR
AAAGAATCAAGAGCAAGTGA+TGG 0.584476 3_4:+69548380 Msa0517820:CDS
AGCATTGGCAGAAGAATTGG+AGG 0.586473 3_4:-69548459 None:intergenic
AGGAATTGAATGACAAGAAG+AGG 0.586876 3_4:+69549998 Msa0517820:intron
ACCCCTGGTGATGCAGCAGA+GGG 0.591324 3_4:-69548302 None:intergenic
CCAAGATCTTGCTAAACAGA+AGG 0.606505 3_4:+69550104 Msa0517820:CDS
AAGAAGAGGCTAGCCACCAG+TGG 0.614610 3_4:+69550012 Msa0517820:CDS
GTGTAATCAAAGATTGTGGT+TGG 0.615544 3_4:-69548099 None:intergenic
TGAAAAGAGCAAGGCCAACA+AGG 0.620440 3_4:+69548502 Msa0517820:CDS
GATTTGGAACTTGAATGTGA+AGG 0.620793 3_4:+69550250 Msa0517820:CDS
GGCAACCAGTGAAATTCTCA+GGG 0.626628 3_4:-69550083 None:intergenic
TAGAAGAGTACCAAAAGGAG+AGG 0.628978 3_4:-69550464 None:intergenic
AAGGGTGTAATCAAAGATTG+TGG 0.631735 3_4:-69548103 None:intergenic
CTAGTAATCCACAATACACA+TGG 0.633671 3_4:+69548202 Msa0517820:exon
CAAAGATTGTGGTTGGCGTG+TGG 0.640195 3_4:-69548092 None:intergenic
TGAATACCTTGAAAAGAGCA+AGG 0.648345 3_4:+69548493 Msa0517820:CDS
ATTTCAAAGAGAACAACACT+AGG 0.650345 3_4:-69550340 None:intergenic
GGAAAGGACAAATACAAGTG+TGG 0.658819 3_4:+69550271 Msa0517820:CDS
TGATGTGTATCAGAGTCCAA+AGG 0.665859 3_4:-69548162 None:intergenic
ATTGGAGGCTGAAACAGCAG+TGG 0.683074 3_4:-69548444 None:intergenic
AGCTTGATACCTGAAACCCC+TGG 0.689347 3_4:-69548317 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATAAATTTTTAAGTTT+GGG - chr3_4:69548915-69548934 None:intergenic 10.0%
!!! AAAACATAAATTTTTAAGTT+TGG - chr3_4:69548916-69548935 None:intergenic 10.0%
!!! AAAATATAAATTTTCAAGTT+CGG + chr3_4:69549354-69549373 Msa0517820:intron 10.0%
!! ATAAAAAAAATATTTACATG+GGG - chr3_4:69549636-69549655 None:intergenic 10.0%
!!! AAAACAATTTTTTTTTTTAC+GGG - chr3_4:69549664-69549683 None:intergenic 10.0%
!!! CAAAACAATTTTTTTTTTTA+CGG - chr3_4:69549665-69549684 None:intergenic 10.0%
!! AAATCAAAAAAAAAATTTAC+AGG + chr3_4:69549799-69549818 Msa0517820:intron 10.0%
!! AATCAAAAAAAAAATTTACA+GGG + chr3_4:69549800-69549819 Msa0517820:intron 10.0%
!! TAAAAATTAAGAAAATTCAA+GGG - chr3_4:69549872-69549891 None:intergenic 10.0%
!! GTTATAAAAATGTTTAAATT+AGG + chr3_4:69550437-69550456 Msa0517820:three_prime_UTR 10.0%
!!! AATTTTATTTTATTGTGAAA+TGG - chr3_4:69550525-69550544 None:intergenic 10.0%
!! TTCTTATTATAGGATAAAAT+TGG - chr3_4:69548581-69548600 None:intergenic 15.0%
!!! AACATAAATTTTTAAGTTTG+GGG - chr3_4:69548914-69548933 None:intergenic 15.0%
!! TATTAAAGACAAACAATTAA+CGG + chr3_4:69548959-69548978 Msa0517820:intron 15.0%
!! TTTAAATAAGTCATAAGTTA+TGG + chr3_4:69549194-69549213 Msa0517820:intron 15.0%
!!! AAATATAAATTTTCAAGTTC+GGG + chr3_4:69549355-69549374 Msa0517820:intron 15.0%
!!! AAACAATTTTTTTTTTTACG+GGG - chr3_4:69549663-69549682 None:intergenic 15.0%
!!! ATCAAAACAAAAAATTTTAC+CGG + chr3_4:69549772-69549791 Msa0517820:intron 15.0%
!! ATCAAAAAAAAAATTTACAG+GGG + chr3_4:69549801-69549820 Msa0517820:intron 15.0%
!! CTAAAAATTAAGAAAATTCA+AGG - chr3_4:69549873-69549892 None:intergenic 15.0%
!! AAAAATATGGTATATTATCA+AGG - chr3_4:69550379-69550398 None:intergenic 15.0%
!!! GACTTAATTTTTATTTCCTT+TGG + chr3_4:69548146-69548165 Msa0517820:five_prime_UTR 20.0%
!!! ATTTAAAAAAAGTACCTTGT+TGG - chr3_4:69548519-69548538 None:intergenic 20.0%
!! AAAAAAATAGCTTCTAACAA+GGG - chr3_4:69548549-69548568 None:intergenic 20.0%
!! AAAAAAAATAGCTTCTAACA+AGG - chr3_4:69548550-69548569 None:intergenic 20.0%
!!! ATAGCAGATTTTCTTATTAT+AGG - chr3_4:69548591-69548610 None:intergenic 20.0%
!! CATCCTTAATCAATTTATTA+TGG + chr3_4:69548701-69548720 Msa0517820:intron 20.0%
!! ACTCCATAATAAATTGATTA+AGG - chr3_4:69548707-69548726 None:intergenic 20.0%
!! CAATTTATTATGGAGTAAAT+AGG + chr3_4:69548711-69548730 Msa0517820:intron 20.0%
!!! ACATAAATTTTTAAGTTTGG+GGG - chr3_4:69548913-69548932 None:intergenic 20.0%
!!! TAATTCTGCATTATTTTTAG+AGG - chr3_4:69549021-69549040 None:intergenic 20.0%
!!! AATATAAATTTTCAAGTTCG+GGG + chr3_4:69549356-69549375 Msa0517820:intron 20.0%
!! CACAAAATAAATGAGTAAAT+AGG - chr3_4:69549530-69549549 None:intergenic 20.0%
!!! TTACTCATTTATTTTGTGTA+TGG + chr3_4:69549532-69549551 Msa0517820:intron 20.0%
!!! TAGCCTTTTATATTGAATTT+TGG + chr3_4:69549567-69549586 Msa0517820:intron 20.0%
!!! AGCCTTTTATATTGAATTTT+GGG + chr3_4:69549568-69549587 Msa0517820:intron 20.0%
!! AACCCAAAATTCAATATAAA+AGG - chr3_4:69549573-69549592 None:intergenic 20.0%
!!! ATATTGAATTTTGGGTTAAT+AGG + chr3_4:69549576-69549595 Msa0517820:intron 20.0%
!!! AACAATTTTTTTTTTTACGG+GGG - chr3_4:69549662-69549681 None:intergenic 20.0%
!!! AAATAAAATCGGTTTTTGTT+TGG - chr3_4:69549705-69549724 None:intergenic 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG + chr3_4:69549734-69549753 Msa0517820:intron 20.0%
!!! TCAAAACAAAAAATTTTACC+GGG + chr3_4:69549773-69549792 Msa0517820:intron 20.0%
!! CGAACAAATAATATTATCAA+GGG - chr3_4:69549898-69549917 None:intergenic 20.0%
!!! CCTTGATAATATTATTTGTT+CGG + chr3_4:69549896-69549915 Msa0517820:intron 20.0%
!! AAAAATAATAAGATGCACTA+AGG + chr3_4:69549936-69549955 Msa0517820:intron 20.0%
!!! TTATTTTGACTGTATGTATA+TGG + chr3_4:69549972-69549991 Msa0517820:intron 20.0%
!! GAAAAAATAGCATTAGAAAA+TGG - chr3_4:69550193-69550212 None:intergenic 20.0%
!! AACAAAAATGCAGAAAAATA+TGG - chr3_4:69550392-69550411 None:intergenic 20.0%
!! GTATAACTATATTATGGAAT+TGG - chr3_4:69550576-69550595 None:intergenic 20.0%
!!! CTTGTTGTATAACTATATTA+TGG - chr3_4:69550582-69550601 None:intergenic 20.0%
! AAATTGATTAAGGATGTGAT+TGG - chr3_4:69548697-69548716 None:intergenic 25.0%
!! TTGACGAAACTTACAATTTT+GGG - chr3_4:69548745-69548764 None:intergenic 25.0%
!! ATTGACGAAACTTACAATTT+TGG - chr3_4:69549493-69549512 None:intergenic 25.0%
!!! TTGACGTTTTGTTAATTTCA+GGG - chr3_4:69548774-69548793 None:intergenic 25.0%
!!! ATTGACGTTTTGTTAATTTC+AGG - chr3_4:69548775-69548794 None:intergenic 25.0%
! TGACTAACAGAAAAATTTGA+CGG - chr3_4:69548839-69548858 None:intergenic 25.0%
!!! CTTTAATATCTTTTGAGTCA+AGG - chr3_4:69548947-69548966 None:intergenic 25.0%
! ACGGTTATCTTTACTATTTA+AGG + chr3_4:69548978-69548997 Msa0517820:intron 25.0%
! GTTAGAATTAATTGTTCATG+AGG + chr3_4:69549126-69549145 Msa0517820:intron 25.0%
! AATTAATTGTTCATGAGGAA+TGG + chr3_4:69549131-69549150 Msa0517820:intron 25.0%
! ATTAATTGTTCATGAGGAAT+GGG + chr3_4:69549132-69549151 Msa0517820:intron 25.0%
!!! TTTGTTTCTGTTATGTCATT+TGG - chr3_4:69549232-69549251 None:intergenic 25.0%
! TGACTCTTTCATTCTTAAAT+GGG - chr3_4:69549268-69549287 None:intergenic 25.0%
! ATGACTCTTTCATTCTTAAA+TGG - chr3_4:69549269-69549288 None:intergenic 25.0%
!! CTTTAATATCTTTTGAGCTA+AGG + chr3_4:69549322-69549341 Msa0517820:intron 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG + chr3_4:69549357-69549376 Msa0517820:intron 25.0%
! TGACTAACTGAAAAATTTGA+CGG + chr3_4:69549400-69549419 Msa0517820:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG + chr3_4:69549436-69549455 Msa0517820:intron 25.0%
!!! ACGTTTTATTAATTTCAGAG+AGG + chr3_4:69549468-69549487 Msa0517820:intron 25.0%
!! CAAAACAAAAAATTTTACCG+GGG + chr3_4:69549774-69549793 Msa0517820:intron 25.0%
!! AAAACAAAAAATTTTACCGG+GGG + chr3_4:69549775-69549794 Msa0517820:intron 25.0%
!!! TTTTTTTTTTGATTTACCCC+CGG - chr3_4:69549794-69549813 None:intergenic 25.0%
! AAGAAAATTCAAGGGTTAAT+AGG - chr3_4:69549864-69549883 None:intergenic 25.0%
! CCGAACAAATAATATTATCA+AGG - chr3_4:69549899-69549918 None:intergenic 25.0%
! AGTGAAACAAAAGATGTTTA+TGG - chr3_4:69550141-69550160 None:intergenic 25.0%
! AATGGTAAATAGGAAAACTT+TGG - chr3_4:69550175-69550194 None:intergenic 25.0%
! AGCATTAGAAAATGGTAAAT+AGG - chr3_4:69550185-69550204 None:intergenic 25.0%
! TACTTTCTGCATAAATGAAA+AGG - chr3_4:69550215-69550234 None:intergenic 25.0%
!!! TTCTGCATTTTTGTTGTTAT+TGG + chr3_4:69550397-69550416 Msa0517820:three_prime_UTR 25.0%
!!! AACTTATTTGTTGCTTTACT+TGG + chr3_4:69550545-69550564 Msa0517820:three_prime_UTR 25.0%
!! AGATTGCATTGATTTCCTAT+TGG - chr3_4:69548064-69548083 None:intergenic 30.0%
TTAAGTCAACTTATGTTGCA+AGG - chr3_4:69548133-69548152 None:intergenic 30.0%
GATAGCAAATCAAGTTATAG+CGG - chr3_4:69548664-69548683 None:intergenic 30.0%
!! GCTATAACTTGATTTGCTAT+CGG + chr3_4:69548663-69548682 Msa0517820:intron 30.0%
! TGACGAAACTTACAATTTTG+GGG - chr3_4:69548744-69548763 None:intergenic 30.0%
!! TGACGTTTTGTTAATTTCAG+GGG - chr3_4:69548773-69548792 None:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+CGG - chr3_4:69548803-69548822 None:intergenic 30.0%
TAACAGAAAAATTTGACGGA+GGG - chr3_4:69548835-69548854 None:intergenic 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG + chr3_4:69549358-69549377 Msa0517820:intron 30.0%
TAACTGAAAAATTTGACGGA+GGG + chr3_4:69549404-69549423 Msa0517820:intron 30.0%
GATTAACGTTATGCAATTTC+AGG + chr3_4:69549435-69549454 Msa0517820:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG + chr3_4:69549437-69549456 Msa0517820:intron 30.0%
TTGACGAAACTTACAATTTC+AGG + chr3_4:69549494-69549513 Msa0517820:intron 30.0%
TGACGAAACTTACAATTTCA+GGG + chr3_4:69549495-69549514 Msa0517820:intron 30.0%
CGGAAATGACTTATATTACA+GGG - chr3_4:69549608-69549627 None:intergenic 30.0%
CCTGTAATATAAGTCATTTC+CGG + chr3_4:69549606-69549625 Msa0517820:intron 30.0%
AATATTTACATGGGGAAAAC+CGG - chr3_4:69549628-69549647 None:intergenic 30.0%
AAAATTTACAGGGGAAAAAC+CGG + chr3_4:69549810-69549829 Msa0517820:intron 30.0%
TTGTTCGGAGTATATTTGAA+AGG + chr3_4:69549911-69549930 Msa0517820:intron 30.0%
ACCATTCATTACAGAAGATT+TGG + chr3_4:69550234-69550253 Msa0517820:CDS 30.0%
TCCAAATCTTCTGTAATGAA+TGG - chr3_4:69550238-69550257 None:intergenic 30.0%
!! GTTCTAATGTTTTCTGGAAA+TGG + chr3_4:69550293-69550312 Msa0517820:CDS 30.0%
ATTTCAAAGAGAACAACACT+AGG - chr3_4:69550343-69550362 None:intergenic 30.0%
AAGAACATTGTTGTGAATCA+CGG + chr3_4:69550599-69550618 Msa0517820:three_prime_UTR 30.0%
GTGTAATCAAAGATTGTGGT+TGG - chr3_4:69548102-69548121 None:intergenic 35.0%
! AAGGGTGTAATCAAAGATTG+TGG - chr3_4:69548106-69548125 None:intergenic 35.0%
CTTATGTTGCAAGGAACAAA+GGG - chr3_4:69548124-69548143 None:intergenic 35.0%
ACTTATGTTGCAAGGAACAA+AGG - chr3_4:69548125-69548144 None:intergenic 35.0%
CTAGTAATCCACAATACACA+TGG + chr3_4:69548202-69548221 Msa0517820:exon 35.0%
TATCAAGCTACCATTGATCA+AGG + chr3_4:69548331-69548350 Msa0517820:CDS 35.0%
ATCACTTGCTCTTGATTCTT+TGG - chr3_4:69548381-69548400 None:intergenic 35.0%
AAAGAATCAAGAGCAAGTGA+TGG + chr3_4:69548380-69548399 Msa0517820:CDS 35.0%
GAGAAATGCTCTTGCTTTAT+TGG + chr3_4:69548406-69548425 Msa0517820:CDS 35.0%
TGAATACCTTGAAAAGAGCA+AGG + chr3_4:69548493-69548512 Msa0517820:CDS 35.0%
! GACGAAACTTACAATTTTGG+GGG - chr3_4:69548743-69548762 None:intergenic 35.0%
!! GACGTTTTGTTAATTTCAGG+GGG - chr3_4:69548772-69548791 None:intergenic 35.0%
AACAGAAAAATTTGACGGAG+GGG - chr3_4:69548834-69548853 None:intergenic 35.0%
CTAACAGAAAAATTTGACGG+AGG - chr3_4:69548836-69548855 None:intergenic 35.0%
! TGGCTTACTTTGTTGTGAAT+TGG + chr3_4:69549161-69549180 Msa0517820:intron 35.0%
CTAACTGAAAAATTTGACGG+AGG + chr3_4:69549403-69549422 Msa0517820:intron 35.0%
AACTGAAAAATTTGACGGAG+GGG + chr3_4:69549405-69549424 Msa0517820:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG + chr3_4:69549438-69549457 Msa0517820:intron 35.0%
GACGAAACTTACAATTTCAG+GGG + chr3_4:69549496-69549515 Msa0517820:intron 35.0%
ACGAAACTTACAATTTCAGG+GGG + chr3_4:69549497-69549516 Msa0517820:intron 35.0%
CCGGAAATGACTTATATTAC+AGG - chr3_4:69549609-69549628 None:intergenic 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + chr3_4:69549679-69549698 Msa0517820:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr3_4:69549746-69549765 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr3_4:69549745-69549764 None:intergenic 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG - chr3_4:69549695-69549714 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG + chr3_4:69549743-69549762 Msa0517820:intron 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG + chr3_4:69549744-69549763 Msa0517820:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + chr3_4:69549745-69549764 Msa0517820:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG + chr3_4:69549746-69549765 Msa0517820:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG - chr3_4:69549679-69549698 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG - chr3_4:69549832-69549851 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG + chr3_4:69549830-69549849 Msa0517820:intron 35.0%
GGAAATGACCTATATTACAG+GGG + chr3_4:69549831-69549850 Msa0517820:intron 35.0%
GAAATGACCTATATTACAGG+GGG + chr3_4:69549832-69549851 Msa0517820:intron 35.0%
! GTTTTTACCCCCTGTAATAT+AGG - chr3_4:69549842-69549861 None:intergenic 35.0%
TGACTGTATGTATATGGTGT+AGG + chr3_4:69549978-69549997 Msa0517820:intron 35.0%
AGGAATTGAATGACAAGAAG+AGG + chr3_4:69549998-69550017 Msa0517820:intron 35.0%
AGAGCATATACAGTGCAATT+TGG + chr3_4:69550048-69550067 Msa0517820:CDS 35.0%
! GATTTGGAACTTGAATGTGA+AGG + chr3_4:69550250-69550269 Msa0517820:CDS 35.0%
!!! AGTGTGGTTCTAATGTTTTC+TGG + chr3_4:69550287-69550306 Msa0517820:CDS 35.0%
AGAACATTGTTGTGAATCAC+GGG + chr3_4:69550600-69550619 Msa0517820:three_prime_UTR 35.0%
GAGTTCGAAGATAACTTGAA+AGG + chr3_4:69550629-69550648 Msa0517820:three_prime_UTR 35.0%
GATAACTTGAAAGGAGATGT+AGG + chr3_4:69550638-69550657 Msa0517820:three_prime_UTR 35.0%
TGATGTGTATCAGAGTCCAA+AGG - chr3_4:69548165-69548184 None:intergenic 40.0%
ATTGAGCTCAGAACCAGATA+TGG - chr3_4:69548264-69548283 None:intergenic 40.0%
! ACTTGTTGAGCCTTGATCAA+TGG - chr3_4:69548344-69548363 None:intergenic 40.0%
! AATCAAGAGCAAGTGATGGA+AGG + chr3_4:69548384-69548403 Msa0517820:CDS 40.0%
TGAAACAGCAGTGGTGAAAA+GGG - chr3_4:69548438-69548457 None:intergenic 40.0%
TTCATCAATAACGCCAGCAT+TGG - chr3_4:69548477-69548496 None:intergenic 40.0%
ACAGAAAAATTTGACGGAGG+GGG - chr3_4:69548833-69548852 None:intergenic 40.0%
ACATAAGTGCAAAACGTCAG+GGG - chr3_4:69548882-69548901 None:intergenic 40.0%
CACATAAGTGCAAAACGTCA+GGG - chr3_4:69548883-69548902 None:intergenic 40.0%
ACTGAAAAATTTGACGGAGG+GGG + chr3_4:69549406-69549425 Msa0517820:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG + chr3_4:69549439-69549458 Msa0517820:intron 40.0%
CGAAACTTACAATTTCAGGG+GGG + chr3_4:69549498-69549517 Msa0517820:intron 40.0%
!! CGGTTTTTGTTTGGCCTATT+AGG - chr3_4:69549696-69549715 None:intergenic 40.0%
CCGGAAATGACCTATATTAC+AGG + chr3_4:69549829-69549848 Msa0517820:intron 40.0%
AAGTTCCCTGAGAATTTCAC+TGG + chr3_4:69550078-69550097 Msa0517820:CDS 40.0%
CCTTCTGTTTAGCAAGATCT+TGG - chr3_4:69550107-69550126 None:intergenic 40.0%
CCAAGATCTTGCTAAACAGA+AGG + chr3_4:69550104-69550123 Msa0517820:CDS 40.0%
GGAACTTGAATGTGAAGGAA+AGG + chr3_4:69550255-69550274 Msa0517820:CDS 40.0%
GGAAAGGACAAATACAAGTG+TGG + chr3_4:69550271-69550290 Msa0517820:CDS 40.0%
!! TAGAAGAGTACCAAAAGGAG+AGG - chr3_4:69550467-69550486 None:intergenic 40.0%
!! GACTCTAGAAGAGTACCAAA+AGG - chr3_4:69550472-69550491 None:intergenic 40.0%
CATTGCAGCCATGTGTATTG+TGG - chr3_4:69548213-69548232 None:intergenic 45.0%
GCTTGTAGCTATGCCATATC+TGG + chr3_4:69548248-69548267 Msa0517820:CDS 45.0%
! GCTCTTGATTCTTTGGCTTC+AGG - chr3_4:69548374-69548393 None:intergenic 45.0%
CTGAAACAGCAGTGGTGAAA+AGG - chr3_4:69548439-69548458 None:intergenic 45.0%
!! AGCATTGGCAGAAGAATTGG+AGG - chr3_4:69548462-69548481 None:intergenic 45.0%
TCCAATTCTTCTGCCAATGC+TGG + chr3_4:69548461-69548480 Msa0517820:CDS 45.0%
!!! TGTTGGCCTTGCTCTTTTCA+AGG - chr3_4:69548502-69548521 None:intergenic 45.0%
TGAAAAGAGCAAGGCCAACA+AGG + chr3_4:69548502-69548521 Msa0517820:CDS 45.0%
AACGTTGTGCAATTTCACGG+AGG - chr3_4:69548800-69548819 None:intergenic 45.0%
CATAAGTGCAAAACGTCAGG+GGG - chr3_4:69548881-69548900 None:intergenic 45.0%
GCACATAAGTGCAAAACGTC+AGG - chr3_4:69548884-69548903 None:intergenic 45.0%
! TCTTGCAAAGTTTGCTCCAC+TGG - chr3_4:69550031-69550050 None:intergenic 45.0%
GGCAACCAGTGAAATTCTCA+GGG - chr3_4:69550086-69550105 None:intergenic 45.0%
TGGCAACCAGTGAAATTCTC+AGG - chr3_4:69550087-69550106 None:intergenic 45.0%
! ATTAGGCATGCCTCTCCTTT+TGG + chr3_4:69550454-69550473 Msa0517820:three_prime_UTR 45.0%
!! CTTCTAGAGTCTTGACTGTG+TGG + chr3_4:69550481-69550500 Msa0517820:three_prime_UTR 45.0%
!! AATAAAAAAAATATTTACAT+GGG - chr3_4:69549637-69549656 None:intergenic 5.0%
!! AAATAAAAAAAATATTTACA+TGG - chr3_4:69549638-69549657 None:intergenic 5.0%
!! TTGAAAAAATAAAATAAAAT+CGG - chr3_4:69549716-69549735 None:intergenic 5.0%
TTGTGGTTGGCGTGTGGATA+AGG - chr3_4:69548089-69548108 None:intergenic 50.0%
CAAAGATTGTGGTTGGCGTG+TGG - chr3_4:69548095-69548114 None:intergenic 50.0%
AGCTTGATACCTGAAACCCC+TGG - chr3_4:69548320-69548339 None:intergenic 50.0%
ATTGGAGGCTGAAACAGCAG+TGG - chr3_4:69548447-69548466 None:intergenic 50.0%
!! GCCAGCATTGGCAGAAGAAT+TGG - chr3_4:69548465-69548484 None:intergenic 50.0%
TCATGAGGAATGGGTGTCTC+TGG + chr3_4:69549141-69549160 Msa0517820:intron 50.0%
! TGCAAAGTTTGCTCCACTGG+TGG - chr3_4:69550028-69550047 None:intergenic 50.0%
! AAGAAGAGGCTAGCCACCAG+TGG + chr3_4:69550012-69550031 Msa0517820:CDS 55.0%
TGCCCTCTGCTGCATCACCA+GGG + chr3_4:69548300-69548319 Msa0517820:CDS 60.0%
! ACCCCTGGTGATGCAGCAGA+GGG - chr3_4:69548305-69548324 None:intergenic 60.0%
! AACCCCTGGTGATGCAGCAG+AGG - chr3_4:69548306-69548325 None:intergenic 60.0%
GCTGCATCACCAGGGGTTTC+AGG + chr3_4:69548308-69548327 Msa0517820:CDS 60.0%
GTGCCCTCTGCTGCATCACC+AGG + chr3_4:69548299-69548318 Msa0517820:CDS 65.0%
GCCCTCTGCTGCATCACCAG+GGG + chr3_4:69548301-69548320 Msa0517820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 69548061 69550677 69548061 ID=Msa0517820;Name=Msa0517820
chr3_4 mRNA 69548061 69550677 69548061 ID=Msa0517820-mRNA-1;Parent=Msa0517820;Name=Msa0517820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=160|1|1|1|1|1|3|359|172
chr3_4 exon 69548061 69548523 69548061 ID=Msa0517820-mRNA-1:exon:18515;Parent=Msa0517820-mRNA-1
chr3_4 exon 69550000 69550125 69550000 ID=Msa0517820-mRNA-1:exon:18516;Parent=Msa0517820-mRNA-1
chr3_4 exon 69550229 69550677 69550229 ID=Msa0517820-mRNA-1:exon:18517;Parent=Msa0517820-mRNA-1
chr3_4 five_prime_UTR 69548061 69548220 69548061 ID=Msa0517820-mRNA-1:five_prime_utr;Parent=Msa0517820-mRNA-1
chr3_4 CDS 69548221 69548523 69548221 ID=Msa0517820-mRNA-1:cds;Parent=Msa0517820-mRNA-1
chr3_4 CDS 69550000 69550125 69550000 ID=Msa0517820-mRNA-1:cds;Parent=Msa0517820-mRNA-1
chr3_4 CDS 69550229 69550318 69550229 ID=Msa0517820-mRNA-1:cds;Parent=Msa0517820-mRNA-1
chr3_4 three_prime_UTR 69550319 69550677 69550319 ID=Msa0517820-mRNA-1:three_prime_utr;Parent=Msa0517820-mRNA-1
Gene Sequence

>Msa0517820

ATGGCTGCAATGAACTCAAGTGTATTAGCTTGTAGCTATGCCATATCTGGTTCTGAGCTCAATGCAAAGCTCATTTCAGTGCCCTCTGCTGCATCACCAGGGGTTTCAGGTATCAAGCTACCATTGATCAAGGCTCAACAAGTGAGAATTCCTGAAGCCAAAGAATCAAGAGCAAGTGATGGAAGGAGAAATGCTCTTGCTTTATTGGCTGCTACCCTTTTCACCACTGCTGTTTCAGCCTCCAATTCTTCTGCCAATGCTGGCGTTATTGATGAATACCTTGAAAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGCTAGCCACCAGTGGAGCAAACTTTGCAAGAGCATATACAGTGCAATTTGGTACTTGCAAGTTCCCTGAGAATTTCACTGGTTGCCAAGATCTTGCTAAACAGAAGAAAGTACCATTCATTACAGAAGATTTGGAACTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA

Protein sequence

>Msa0517820

MAAMNSSVLACSYAISGSELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESRASDGRRNALALLAATLFTTAVSASNSSANAGVIDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW*