AlfalfaGEDB | Msa0625820

M. sativa cultivar zhongmu-4 / Msa0625820

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625820	XP_003604248.1	96.406	473	16	1	1	473	1	472	0.0	950

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625820	sp\|Q9S9N6\|PNSB1_ARATH	74.353	425	106	3	50	472	37	460	0.0	637

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625820	G7JEF5	96.406	473	16	1	1	473	1	472	0.0	950

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0625820	0.825844	3.755572e-54	-8.615850e-47
Msa0000220	Msa0625820	0.853679	2.038029e-61	-8.615850e-47
Msa0001040	Msa0625820	0.812501	4.106747e-51	-8.615850e-47
Msa0001420	Msa0625820	0.818329	2.074777e-52	-8.615850e-47
Msa0001510	Msa0625820	0.910282	2.229707e-82	-8.615850e-47
Msa0001540	Msa0625820	0.878480	2.713913e-69	-8.615850e-47
Msa0002060	Msa0625820	0.806909	6.541027e-50	-8.615850e-47
Msa0002110	Msa0625820	0.821599	3.706890e-53	-8.615850e-47
Msa0002690	Msa0625820	0.924577	5.852528e-90	-8.615850e-47
Msa0002700	Msa0625820	0.920773	8.360499e-88	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625820	MtrunA17_Chr4g0001381	96.406	473	16	1	1	473	1	472	0.0	950

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625820	AT1G15980.1	74.353	425	106	3	50	472	37	460	0.0	637

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Find 133 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCCACAATGCAGTCTA+GGG	0.479022	4_3:+5169840	Msa0625820:CDS
AAATTTCAGCCCACACTTCA+AGG	0.435721	4_3:-5169885	None:intergenic
AACGAACCATATTCGATATT+CGG	0.330076	4_3:-5168621	None:intergenic
AAGGCCACAATGCAGTCTAG+GGG	0.695170	4_3:+5169841	Msa0625820:CDS
AAGTTAGAGGTGATGTTAGA+AGG	0.352974	4_3:+5168763	Msa0625820:CDS
AATCCAAACAACAATCCCTA+TGG	0.508106	4_3:+5168687	Msa0625820:CDS
AATCCATAGGGATTGTTGTT+TGG	0.334719	4_3:-5168690	None:intergenic
AATGACTACCACTATAGTTA+AGG	0.423919	4_3:-5168190	None:intergenic
AATGTGAATGCCGCAGGAGC+AGG	0.445822	4_3:+5169372	Msa0625820:CDS
AATTGTAACAATGTGATGGA+TGG	0.632372	4_3:-5168521	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGACTACCACTATAGTTA+AGG	-	chr4_3:5168193-5168212	None:intergenic	30.0%
CTGTTACCAATTATCAATGA+TGG	-	chr4_3:5168238-5168257	None:intergenic	30.0%
ACCAAATTTGAAAACCTCAA+TGG	+	chr4_3:5168377-5168396	Msa0625820:exon	30.0%
GATAACAATGAAACATTGGT+TGG	-	chr4_3:5168492-5168511	None:intergenic	30.0%
GTTGAATTGTAACAATGTGA+TGG	-	chr4_3:5168528-5168547	None:intergenic	30.0%
AACGAACCATATTCGATATT+CGG	-	chr4_3:5168624-5168643	None:intergenic	30.0%
TATGTTAATGCTTACAGAGT+AGG	+	chr4_3:5169250-5169269	Msa0625820:intron	30.0%
TCATGAATAAATATGCTGCA+TGG	-	chr4_3:5169317-5169336	None:intergenic	30.0%
TATGTGAGTTTGTCTATGTT+TGG	+	chr4_3:5169455-5169474	Msa0625820:intron	30.0%
ATCTAACGGTTAAGATTGAT+TGG	-	chr4_3:5169509-5169528	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	5168035	5171628	5168035	ID=Msa0625820;Name=Msa0625820
chr4_3	mRNA	5168035	5171628	5168035	ID=Msa0625820-mRNA-1;Parent=Msa0625820;Name=Msa0625820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=361\|1\|1\|1\|0.8\|0.66\|6\|289\|473
chr4_3	exon	5168035	5169010	5168035	ID=Msa0625820-mRNA-1:exon:1409;Parent=Msa0625820-mRNA-1
chr4_3	exon	5169267	5169457	5169267	ID=Msa0625820-mRNA-1:exon:1410;Parent=Msa0625820-mRNA-1
chr4_3	exon	5169663	5169920	5169663	ID=Msa0625820-mRNA-1:exon:1411;Parent=Msa0625820-mRNA-1
chr4_3	exon	5170506	5170611	5170506	ID=Msa0625820-mRNA-1:exon:1412;Parent=Msa0625820-mRNA-1
chr4_3	exon	5170980	5171065	5170980	ID=Msa0625820-mRNA-1:exon:1413;Parent=Msa0625820-mRNA-1
chr4_3	exon	5171174	5171628	5171174	ID=Msa0625820-mRNA-1:exon:1414;Parent=Msa0625820-mRNA-1
chr4_3	five_prime_UTR	5168035	5168395	5168035	ID=Msa0625820-mRNA-1:five_prime_utr;Parent=Msa0625820-mRNA-1
chr4_3	CDS	5168396	5169010	5168396	ID=Msa0625820-mRNA-1:cds;Parent=Msa0625820-mRNA-1
chr4_3	CDS	5169267	5169457	5169267	ID=Msa0625820-mRNA-1:cds;Parent=Msa0625820-mRNA-1
chr4_3	CDS	5169663	5169920	5169663	ID=Msa0625820-mRNA-1:cds;Parent=Msa0625820-mRNA-1
chr4_3	CDS	5170506	5170611	5170506	ID=Msa0625820-mRNA-1:cds;Parent=Msa0625820-mRNA-1
chr4_3	CDS	5170980	5171065	5170980	ID=Msa0625820-mRNA-1:cds;Parent=Msa0625820-mRNA-1
chr4_3	CDS	5171174	5171339	5171174	ID=Msa0625820-mRNA-1:cds;Parent=Msa0625820-mRNA-1
chr4_3	three_prime_UTR	5171340	5171628	5171340	ID=Msa0625820-mRNA-1:three_prime_utr;Parent=Msa0625820-mRNA-1

Gene Sequence

>Msa0625820

ATGGCTGCAACTGCAACATATAATTTACATACCAAAATTTCAAAACCATTTTCACATTTCACTACAAACACATTTTCCATTCCTTCAACTTATCCAACCAATGTTTCATTGTTATCTTCATTAGACCATCCATCACATTGTTACAATTCAACTCGAAAACTAAATCTTCGCGTAAATGCCAAAAAGAACAATCCATGGCTAGACCCTTTTGACGATGGAGAAGACCCGAATATCGAATATGGTTCGTTGTTTTCAGACGGTAAACAAGACGAGGATCCAAGGCCGCCGGATAATCCAAACAACAATCCCTATGGATTCTTGAAGTTTCCAGCTGGTTATATGGTTGAGATAGCTCCTTTAGGATTGAAAGTTAGAGGTGATGTTAGAAGGTGTTGTTGTGTGGTATCTGGTGGTGTTTATGAGAATCTGTTGTTTTTTCCAATGATTCAGTTAATTAAGGATAGGTACCCTGGTGTTCAGATTGATGTTGTGGGTTCTGAGAGAGGGAAACAATGTTATGAGTTGAATAAGAATGTTAGATGGGCTAATGTTTTTGATCCGGACGATGAGTTTCCTGAGCCTGCTGAGTATACTGATTTTGTTGGTCAGCTAAAGAGTAGGTACTATGACATGATCTTGAGCACAAAATTGGCAGGAGTTGGCCATGCAGCATATTTATTCATGACAACCGCGCGAGATAGAGTTAGTTATGTCTACCCAAATGTGAATGCCGCAGGAGCAGGATTGTTTTTATCTGAAACATTCACACCTGATAGTACAAATCTTTCCGAGGGAGGATATCATATGTATCATCAAATGGAAGACTGGCTAGGAAGACCATTTCGAAGTGTTCCACGACAGGTGGTGCCACCGCTTAAAATATCACTTTCGAGGAAGTTGAAGGAAGTTGTGGAGGAGAGATACACAAAAGCAGGTGTAAAGAAAGGAAGATATATTGTGATTCATGGGATACAATCAGACTCAAAGGCCACAATGCAGTCTAGGGGTGATCCTGATAGCTTGCTACCCCTTGAAGTGTGGGCTGAAATTTCTGATGCTGTAAGGGAATTTACACCACTTTTTGTCATTCCACATGAGAAAGAAAGGGAAAATGTTGAGGAAATAGTTGGAGAAGATTCGTCCATAATCTTCATTACCACCCCTGGACAGCTGGCTGCTCTTATTAATGACTCAGCTGGAGTTATAGCAACCAATACCGCTGCAATTCAGCTCGCAAATGCGCGCGAAAAACCTAGTGTTGCACTATTTTGCTCTAAAGAGAAGGGAAACAAGTTTGTTCCGCAGGCAGAAGAGAAGAAATGCATTGTGATATCATCCAAGACGGGGAAGTTGATCGATATAGATGTTGAGGCTGTAAAAAGTGCAATTCAAACTTTCAATGTTTCTCTAGCTTTTGCATAG

Protein sequence

>Msa0625820

MAATATYNLHTKISKPFSHFTTNTFSIPSTYPTNVSLLSSLDHPSHCYNSTRKLNLRVNAKKNNPWLDPFDDGEDPNIEYGSLFSDGKQDEDPRPPDNPNNNPYGFLKFPAGYMVEIAPLGLKVRGDVRRCCCVVSGGVYENLLFFPMIQLIKDRYPGVQIDVVGSERGKQCYELNKNVRWANVFDPDDEFPEPAEYTDFVGQLKSRYYDMILSTKLAGVGHAAYLFMTTARDRVSYVYPNVNAAGAGLFLSETFTPDSTNLSEGGYHMYHQMEDWLGRPFRSVPRQVVPPLKISLSRKLKEVVEERYTKAGVKKGRYIVIHGIQSDSKATMQSRGDPDSLLPLEVWAEISDAVREFTPLFVIPHEKERENVEEIVGEDSSIIFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSVALFCSKEKGNKFVPQAEEKKCIVISSKTGKLIDIDVEAVKSAIQTFNVSLAFA*