AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967890 MtrunA17_Chr2g0331361 89.744 273 20 1 85 349 1 273 2.64e-177 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967890 AT1G51080.1 48.416 221 103 4 131 343 63 280 1.11e-54 181

Find 106 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACCTTCTCGGCACTTCTA+AGG 0.214375 6_3:-98006435 Msa0967890:CDS
TTTGCTCTTAATGTGTTAAA+TGG 0.235237 6_3:-98006578 Msa0967890:CDS
TCATGTTTACTTTATGTTTC+GGG 0.243260 6_3:-98006867 Msa0967890:CDS
GTTAGGTTGGGTGTTGGTAT+TGG 0.265352 6_3:+98006370 None:intergenic
CCAAATTAAAAGATTGGGTT+TGG 0.268613 6_3:+98008723 None:intergenic
ATCATGTTTACTTTATGTTT+CGG 0.295381 6_3:-98006868 Msa0967890:CDS
GCCCAGTCGTTCCACTGTTC+AGG 0.305450 6_3:-98008632 Msa0967890:CDS
CGTTCCACTGTTCAGGTTGT+TGG 0.305864 6_3:-98008625 Msa0967890:CDS
GTGAAACCAAATTAAAAGAT+TGG 0.346371 6_3:+98008717 None:intergenic
TAGCAGGTGGGTGGTTAGGT+TGG 0.367914 6_3:+98006357 None:intergenic
CAAATTAAAAGATTGGGTTT+GGG 0.374707 6_3:+98008724 None:intergenic
AAAGTTGATTTCGACCTTCT+CGG 0.376013 6_3:-98006446 Msa0967890:CDS
CGAAATCTATTATTCTGTCT+CGG 0.376173 6_3:+98006753 None:intergenic
TGAAACCAAATTAAAAGATT+GGG 0.384630 6_3:+98008718 None:intergenic
TAGGATGCTGCCATGGTTGA+TGG 0.394720 6_3:+98006124 None:intergenic
TCAATGCGGTCTTTGTAGAT+TGG 0.399152 6_3:+98006608 None:intergenic
CTTAAGAGCACGCGAGTTTG+AGG 0.411946 6_3:-98006666 Msa0967890:CDS
CTAGTAGCAGGTGGGTGGTT+AGG 0.415512 6_3:+98006353 None:intergenic
CGAGACAGAATAATAGATTT+CGG 0.417784 6_3:-98006752 Msa0967890:CDS
CAATCCATTCCCCGGACGTC+AGG 0.418797 6_3:-98006162 Msa0967890:CDS
TCTGCTGCTGCTAGATCCAT+TGG 0.419249 6_3:-98006542 Msa0967890:CDS
CTTTGTAGATTGGGTCTAGA+AGG 0.419945 6_3:+98006618 None:intergenic
CAATGCGGTCTTTGTAGATT+GGG 0.420162 6_3:+98006609 None:intergenic
TTTAAAGTTGAGTTTAGCTT+AGG 0.423436 6_3:+98006105 None:intergenic
AGCAGGTGGGTGGTTAGGTT+GGG 0.433268 6_3:+98006358 None:intergenic
CAGGAGATAAGCAAGAGATT+TGG 0.434593 6_3:-98006500 Msa0967890:CDS
TTCAGAAAGAGAAATTAAAC+TGG 0.440028 6_3:-98006777 Msa0967890:CDS
TGGGTGGTTAGGTTGGGTGT+TGG 0.441793 6_3:+98006364 None:intergenic
GAAATCTATTATTCTGTCTC+GGG 0.448218 6_3:+98006754 None:intergenic
AGAAGAAGGAGGAGTGGCCT+TGG 0.448906 6_3:+98008589 None:intergenic
CACTTGAGTGGCGGAGAAGA+AGG 0.453433 6_3:+98008575 None:intergenic
AGGAAGGAGAAAACCGTTGT+TGG 0.463848 6_3:+98008541 None:intergenic
CTCAGAATCTGCCGCTCCAA+TGG 0.465779 6_3:+98006526 None:intergenic
ACGGAGAAGAGCCTGACGTC+CGG 0.467710 6_3:+98006151 None:intergenic
AAATCAAAAGCAGCGTTATG+TGG 0.472830 6_3:-98006828 Msa0967890:CDS
GAAAACCGTTGTTGGCTTGA+CGG 0.475146 6_3:+98008549 None:intergenic
AACCTGAACAGTGGAACGAC+TGG 0.476170 6_3:+98008630 None:intergenic
CCACCTGCTACTAGTATCAT+TGG 0.480418 6_3:-98006344 Msa0967890:CDS
GATAAGCAAGAGATTTGGTT+GGG 0.481364 6_3:-98006495 Msa0967890:CDS
AGAGCCTGACGTCCGGGGAA+TGG 0.482518 6_3:+98006158 None:intergenic
AAATACAAGGGGAAGATGTT+GGG 0.485271 6_3:-98006728 Msa0967890:CDS
CGGAGAAGAGCCTGACGTCC+GGG 0.490784 6_3:+98006152 None:intergenic
GACCTTCTCGGCACTTCTAA+GGG 0.491235 6_3:-98006434 Msa0967890:CDS
AAAATACAAGGGGAAGATGT+TGG 0.491381 6_3:-98006729 Msa0967890:CDS
CTGACGTCCGGGGAATGGAT+TGG 0.498352 6_3:+98006163 None:intergenic
AGCGGCAGATTCTGAGCTGC+AGG 0.508668 6_3:-98006519 Msa0967890:CDS
CCACATTGTTGTCCTTCTGT+TGG 0.509399 6_3:+98006231 None:intergenic
GTGGAACGACTGGGCGGAGA+AGG 0.513943 6_3:+98008640 None:intergenic
TGCCATGGTTGATGGCCTTA+CGG 0.514572 6_3:+98006132 None:intergenic
TCGCTGAAATTGACAAGTCT+CGG 0.520757 6_3:+98006401 None:intergenic
TTCCGTCGAGCTACCTCAAG+TGG 0.521226 6_3:-98006700 Msa0967890:CDS
AGCACGCGAGTTTGAGGAGT+GGG 0.522721 6_3:-98006660 Msa0967890:CDS
ACAGTAGTAGTAGGACTAAG+AGG 0.528829 6_3:-98006307 Msa0967890:CDS
TCCACTGTTCAGGTTGTTGG+TGG 0.530058 6_3:-98008622 Msa0967890:CDS
AATAGATTTCGGAAAATACA+AGG 0.531136 6_3:-98006741 Msa0967890:CDS
GCCATTGCCAATCCATTCCC+CGG 0.538546 6_3:-98006170 Msa0967890:CDS
ACGGTAGTAACAGTAGTAGT+AGG 0.539912 6_3:-98006316 Msa0967890:CDS
TTGGTGGTGCAGAGTTGCCA+AGG 0.549204 6_3:-98008606 Msa0967890:CDS
CTCCCTTAGAAGTGCCGAGA+AGG 0.555291 6_3:+98006432 None:intergenic
ACCTGAACAGTGGAACGACT+GGG 0.562572 6_3:+98008631 None:intergenic
ATAGAGTCTACCTCTGAGGA+AGG 0.563986 6_3:+98008525 None:intergenic
AATCAAAAGCAGCGTTATGT+GGG 0.565427 6_3:-98006827 Msa0967890:CDS
TGCTCCAACCAACTTTGTCA+AGG 0.565623 6_3:+98006468 None:intergenic
ACGTCAGGCTCTTCTCCGTA+AGG 0.566162 6_3:-98006147 Msa0967890:CDS
AAATGAAGCGCACCAACAGA+AGG 0.567882 6_3:-98006243 Msa0967890:CDS
AGATAAGCAAGAGATTTGGT+TGG 0.569741 6_3:-98006496 Msa0967890:CDS
TGATAGAAAAGAATAAAGAA+AGG 0.571066 6_3:+98006068 None:intergenic
TAGTAGTAGGACTAAGAGGA+TGG 0.572795 6_3:-98006303 Msa0967890:CDS
TTGTTTGCTTGCAGTTGCAA+AGG 0.573981 6_3:-98006937 Msa0967890:intron
TGGCGGAGAAGAAGGAGGAG+TGG 0.579227 6_3:+98008583 None:intergenic
CTACCAATGATACTAGTAGC+AGG 0.580274 6_3:+98006341 None:intergenic
TCCGGGGAATGGATTGGCAA+TGG 0.584712 6_3:+98006169 None:intergenic
GCTTGACGGCGACACTTGAG+TGG 0.585353 6_3:+98008563 None:intergenic
TGGGATAACCTTGACAAAGT+TGG 0.586673 6_3:-98006476 Msa0967890:CDS
ATAACCTTGACAAAGTTGGT+TGG 0.591237 6_3:-98006472 Msa0967890:CDS
TTCTCGGCACTTCTAAGGGA+GGG 0.601983 6_3:-98006430 Msa0967890:CDS
TTTAGCTTAGGATGCTGCCA+TGG 0.602732 6_3:+98006117 None:intergenic
CTCCGTAAGGCCATCAACCA+TGG 0.607049 6_3:-98006134 Msa0967890:CDS
GAAAAGAATAAAGAAAGGCA+TGG 0.608100 6_3:+98006073 None:intergenic
TCTACAAAGACCGCATTGAG+TGG 0.608441 6_3:-98006604 Msa0967890:CDS
ACTAGTATCATTGGTAGCAA+CGG 0.610173 6_3:-98006335 Msa0967890:CDS
TCCGTCGAGCTACCTCAAGT+GGG 0.610493 6_3:-98006699 Msa0967890:CDS
ACGCTGTGACTGTGAGTGTG+TGG 0.616052 6_3:+98008668 None:intergenic
CCAATGATACTAGTAGCAGG+TGG 0.627861 6_3:+98006344 None:intergenic
ATAGATTTCGGAAAATACAA+GGG 0.628131 6_3:-98006740 Msa0967890:CDS
CGAGACAGAAAATGAGATCG+AGG 0.635307 6_3:-98006271 Msa0967890:CDS
TGATACTAGTAGCAGGTGGG+TGG 0.637051 6_3:+98006348 None:intergenic
CTACAAAGACCGCATTGAGT+GGG 0.639133 6_3:-98006603 Msa0967890:CDS
GGAGAAGAGCCTGACGTCCG+GGG 0.642345 6_3:+98006153 None:intergenic
TTGAGTGGCGGAGAAGAAGG+AGG 0.642533 6_3:+98008578 None:intergenic
CTTCTCGGCACTTCTAAGGG+AGG 0.649267 6_3:-98006431 Msa0967890:CDS
GTGACTGTGAGTGTGTGGAG+TGG 0.653778 6_3:+98008673 None:intergenic
TAGATTTCGGAAAATACAAG+GGG 0.656423 6_3:-98006739 Msa0967890:CDS
ACTTGAGGTAGCTCGACGGA+AGG 0.664751 6_3:+98006702 None:intergenic
CAATGATACTAGTAGCAGGT+GGG 0.664856 6_3:+98006345 None:intergenic
TGCTGCTAGATCCATTGGAG+CGG 0.676565 6_3:-98006537 Msa0967890:CDS
ACCCACTTGAGGTAGCTCGA+CGG 0.680643 6_3:+98006698 None:intergenic
TGACGGCGACACTTGAGTGG+CGG 0.690479 6_3:+98008566 None:intergenic
TAGAATAGAGTCTACCTCTG+AGG 0.692377 6_3:+98008521 None:intergenic
TGTCGCCGTCAAGCCAACAA+CGG 0.695144 6_3:-98008554 Msa0967890:CDS
ACCACCAACAACCTGAACAG+TGG 0.702343 6_3:+98008621 None:intergenic
CCAACAGAAGGACAACAATG+TGG 0.706083 6_3:-98006231 Msa0967890:CDS
GAGCAAACTCCCACTCAATG+CGG 0.708509 6_3:+98006594 None:intergenic
GAGCACGCGAGTTTGAGGAG+TGG 0.717265 6_3:-98006661 Msa0967890:CDS
GTGGATTGTGCGATAATGTG+AGG 0.733787 6_3:+98008692 None:intergenic
TGAACAGTGGAACGACTGGG+CGG 0.739181 6_3:+98008634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCAATTAAATTTACA+GGG + chr6_3:98006532-98006551 None:intergenic 10.0%
!!! TTTTTTTCAATTAAATTTAC+AGG + chr6_3:98006533-98006552 None:intergenic 10.0%
!! TTTAAAAAATACTCAAATAT+TGG - chr6_3:98007536-98007555 Msa0967890:intron 10.0%
!! TCATTCAAATAAATAAATAA+AGG + chr6_3:98007719-98007738 None:intergenic 10.0%
!! AAAAAAAGAGATATATATAT+TGG + chr6_3:98008699-98008718 None:intergenic 10.0%
!! AAATTAAAATTTGACAAAAC+TGG + chr6_3:98006896-98006915 None:intergenic 15.0%
!!! AGTTTTGTCAAATTTTAATT+TGG - chr6_3:98006895-98006914 Msa0967890:CDS 15.0%
!! TAAATAAATCATGTTTGATT+TGG + chr6_3:98007407-98007426 None:intergenic 15.0%
!! ATCAAACATGATTTATTTAT+TGG - chr6_3:98007408-98007427 Msa0967890:intron 15.0%
!!! TTTTTAAATATATCCAAACA+AGG + chr6_3:98007524-98007543 None:intergenic 15.0%
!! AATATATGAATTTATCTGTT+TGG + chr6_3:98007635-98007654 None:intergenic 15.0%
!! TCAAATAAATAAATAAAGGT+AGG + chr6_3:98007715-98007734 None:intergenic 15.0%
!! ATATTGGAAAAATTGAAAAT+TGG + chr6_3:98008683-98008702 None:intergenic 15.0%
!! TGAAACCAAATTAAAAGATT+GGG + chr6_3:98005998-98006017 None:intergenic 20.0%
!! AAAAAAAATGCAGAAACAAT+TGG + chr6_3:98006317-98006336 None:intergenic 20.0%
!! TTTAGCCTCTTAAAAAAAAA+TGG + chr6_3:98006986-98007005 None:intergenic 20.0%
!! ATCATGTTTACTTTATGTTT+CGG - chr6_3:98007845-98007864 Msa0967890:intron 20.0%
!! TGATAGAAAAGAATAAAGAA+AGG + chr6_3:98008648-98008667 None:intergenic 20.0%
! CAAATTAAAAGATTGGGTTT+GGG + chr6_3:98005992-98006011 None:intergenic 25.0%
! GTGAAACCAAATTAAAAGAT+TGG + chr6_3:98005999-98006018 None:intergenic 25.0%
!! TGTTCTGTTTGTTGAAAAAA+TGG + chr6_3:98006721-98006740 None:intergenic 25.0%
!! AGTCTTAACATTTTCATACT+AGG - chr6_3:98006743-98006762 Msa0967890:CDS 25.0%
!! GTCTTAACATTTTCATACTA+GGG - chr6_3:98006744-98006763 Msa0967890:CDS 25.0%
!! CTATATTTTACTTCGAAAGT+AGG + chr6_3:98006830-98006849 None:intergenic 25.0%
! TTTCGAAGTAAAATATAGCA+CGG - chr6_3:98006832-98006851 Msa0967890:CDS 25.0%
! TCTTAAAAAAAAATGGTGTG+TGG + chr6_3:98006979-98006998 None:intergenic 25.0%
!!! ACACACCATTTTTTTTTAAG+AGG - chr6_3:98006978-98006997 Msa0967890:intron 25.0%
! ACTTAATGCGTGAATATAAA+TGG + chr6_3:98007021-98007040 None:intergenic 25.0%
! ATGAGCAAATGTTTATAAGT+AGG - chr6_3:98007099-98007118 Msa0967890:intron 25.0%
! TGAGCAAATGTTTATAAGTA+GGG - chr6_3:98007100-98007119 Msa0967890:intron 25.0%
! AAACAAAATCCAAATTAGTC+AGG + chr6_3:98007154-98007173 None:intergenic 25.0%
! TTAAATATATCCAAACAAGG+AGG + chr6_3:98007521-98007540 None:intergenic 25.0%
! TCATGTTTACTTTATGTTTC+GGG - chr6_3:98007846-98007865 Msa0967890:intron 25.0%
! TTCAGAAAGAGAAATTAAAC+TGG - chr6_3:98007936-98007955 Msa0967890:intron 25.0%
! AATAGATTTCGGAAAATACA+AGG - chr6_3:98007972-98007991 Msa0967890:intron 25.0%
! ATAGATTTCGGAAAATACAA+GGG - chr6_3:98007973-98007992 Msa0967890:intron 25.0%
! TTTGCTCTTAATGTGTTAAA+TGG - chr6_3:98008135-98008154 Msa0967890:intron 25.0%
!! TTTAAAGTTGAGTTTAGCTT+AGG + chr6_3:98008611-98008630 None:intergenic 25.0%
CCAAATTAAAAGATTGGGTT+TGG + chr6_3:98005993-98006012 None:intergenic 30.0%
!! CCAAACCCAATCTTTTAATT+TGG - chr6_3:98005990-98006009 Msa0967890:three_prime_UTR 30.0%
AGCTATAAACTACTTGAATC+AGG + chr6_3:98006485-98006504 None:intergenic 30.0%
! ATTGTTAGTTTATCCGCTAT+CGG - chr6_3:98006652-98006671 Msa0967890:CDS 30.0%
! ATAGACTAATTTGTCAACAG+TGG - chr6_3:98006797-98006816 Msa0967890:CDS 30.0%
! TGCTATTAGATTTTCGCTAT+TGG - chr6_3:98006952-98006971 Msa0967890:intron 30.0%
AATGCGTGAATATAAATGGT+GGG + chr6_3:98007017-98007036 None:intergenic 30.0%
TAATGCGTGAATATAAATGG+TGG + chr6_3:98007018-98007037 None:intergenic 30.0%
TAAGAGTCACACATTAGAAA+TGG - chr6_3:98007070-98007089 Msa0967890:intron 30.0%
!! TGTTTTTGCCAAAACTGAAT+TGG - chr6_3:98007169-98007188 Msa0967890:intron 30.0%
!!! GATCCCTCACAAATTTTTTA+CGG + chr6_3:98007196-98007215 None:intergenic 30.0%
AAATTTGTGAGGGATCAAAA+TGG - chr6_3:98007200-98007219 Msa0967890:intron 30.0%
ACCAACAACATGTATTTCAT+TGG - chr6_3:98007264-98007283 Msa0967890:intron 30.0%
CCAACAACATGTATTTCATT+GGG - chr6_3:98007265-98007284 Msa0967890:intron 30.0%
!! CATCAATGTGAACCATTTTT+CGG - chr6_3:98007319-98007338 Msa0967890:intron 30.0%
GGCACTAACATATTCATAAA+AGG + chr6_3:98007668-98007687 None:intergenic 30.0%
! TTCAATCTTTGGAGAATCTA+AGG + chr6_3:98007689-98007708 None:intergenic 30.0%
! AAGGTAGGATTTTCAATCTT+TGG + chr6_3:98007700-98007719 None:intergenic 30.0%
GAAATCTATTATTCTGTCTC+GGG + chr6_3:98007962-98007981 None:intergenic 30.0%
CGAAATCTATTATTCTGTCT+CGG + chr6_3:98007963-98007982 None:intergenic 30.0%
CGAGACAGAATAATAGATTT+CGG - chr6_3:98007961-98007980 Msa0967890:intron 30.0%
TAGATTTCGGAAAATACAAG+GGG - chr6_3:98007974-98007993 Msa0967890:intron 30.0%
GAAAAGAATAAAGAAAGGCA+TGG + chr6_3:98008643-98008662 None:intergenic 30.0%
!!! TCTCTTTTTTTTCTCTGTCT+TGG - chr6_3:98008708-98008727 Msa0967890:CDS 30.0%
GTAGCGTAAATTTGACACAT+TGG + chr6_3:98006269-98006288 None:intergenic 35.0%
!!! TGCTTTTTAGAGTCAAGAGT+CGG - chr6_3:98006342-98006361 Msa0967890:CDS 35.0%
!!! GGTCCTTCACAATTTTTTAG+CGG - chr6_3:98006363-98006382 Msa0967890:CDS 35.0%
ATGCCGCTAAAAAATTGTGA+AGG + chr6_3:98006369-98006388 None:intergenic 35.0%
!!! CACAATTTTTTAGCGGCATA+AGG - chr6_3:98006370-98006389 Msa0967890:CDS 35.0%
AAATGGCAGGTAACTTATAG+TGG + chr6_3:98006704-98006723 None:intergenic 35.0%
! CTGTTTGTTGAAAAAATGGC+AGG + chr6_3:98006717-98006736 None:intergenic 35.0%
ATAACCAGCTTATGATACGA+GGG + chr6_3:98007130-98007149 None:intergenic 35.0%
! TTTACGGTCCAATTCAGTTT+TGG + chr6_3:98007180-98007199 None:intergenic 35.0%
TGGACCGTAAAAAATTTGTG+AGG - chr6_3:98007189-98007208 Msa0967890:intron 35.0%
GGACCGTAAAAAATTTGTGA+GGG - chr6_3:98007190-98007209 Msa0967890:intron 35.0%
CCCAATGAAATACATGTTGT+TGG + chr6_3:98007268-98007287 None:intergenic 35.0%
!! TTCATTGGGTTAGTTTGCTT+CGG - chr6_3:98007279-98007298 Msa0967890:intron 35.0%
! CATTGATGGAAATTTTGTGC+AGG + chr6_3:98007307-98007326 None:intergenic 35.0%
CGAAAAATGGTTCACATTGA+TGG + chr6_3:98007321-98007340 None:intergenic 35.0%
! TTCGGTTTTCAACCGAAAAA+TGG + chr6_3:98007334-98007353 None:intergenic 35.0%
!! TGTAACAAGTCGATTTGGTT+CGG + chr6_3:98007352-98007371 None:intergenic 35.0%
ATGAGCAGAATTGAATGAAG+TGG + chr6_3:98007592-98007611 None:intergenic 35.0%
CAAAACAAAGAGACTAGAGT+TGG + chr6_3:98007759-98007778 None:intergenic 35.0%
AAATCAAAAGCAGCGTTATG+TGG - chr6_3:98007885-98007904 Msa0967890:intron 35.0%
AATCAAAAGCAGCGTTATGT+GGG - chr6_3:98007886-98007905 Msa0967890:intron 35.0%
AAAATACAAGGGGAAGATGT+TGG - chr6_3:98007984-98008003 Msa0967890:intron 35.0%
AAATACAAGGGGAAGATGTT+GGG - chr6_3:98007985-98008004 Msa0967890:intron 35.0%
!!! AGTTTTTTGAAACCCACTTG+AGG + chr6_3:98008029-98008048 None:intergenic 35.0%
! AGATAAGCAAGAGATTTGGT+TGG - chr6_3:98008217-98008236 Msa0967890:intron 35.0%
! GATAAGCAAGAGATTTGGTT+GGG - chr6_3:98008218-98008237 Msa0967890:intron 35.0%
! ATAACCTTGACAAAGTTGGT+TGG - chr6_3:98008241-98008260 Msa0967890:intron 35.0%
! AAAGTTGATTTCGACCTTCT+CGG - chr6_3:98008267-98008286 Msa0967890:intron 35.0%
! ACTAGTATCATTGGTAGCAA+CGG - chr6_3:98008378-98008397 Msa0967890:intron 35.0%
TAGAATAGAGTCTACCTCTG+AGG + chr6_3:98006195-98006214 None:intergenic 40.0%
ACGAGCTTAGCTTATACTAG+TGG - chr6_3:98006449-98006468 Msa0967890:CDS 40.0%
CGGACAATGTTCATAAGTGA+AGG - chr6_3:98006852-98006871 Msa0967890:CDS 40.0%
!! CGTGAATATAAATGGTGGGT+GGG + chr6_3:98007013-98007032 None:intergenic 40.0%
TCTAATAGTGCTTAGCGTGA+AGG - chr6_3:98007040-98007059 Msa0967890:intron 40.0%
CATAACCAGCTTATGATACG+AGG + chr6_3:98007131-98007150 None:intergenic 40.0%
CTGGTTATGCCTGACTAATT+TGG - chr6_3:98007142-98007161 Msa0967890:intron 40.0%
CGTAGTGTAACAAGTCGATT+TGG + chr6_3:98007357-98007376 None:intergenic 40.0%
! TGTAGACAACTAGCCTATGT+TGG - chr6_3:98007460-98007479 Msa0967890:intron 40.0%
TCATTCCAGCAATCCAACAT+AGG + chr6_3:98007476-98007495 None:intergenic 40.0%
TGATATGATGCCTCCTTGTT+TGG - chr6_3:98007508-98007527 Msa0967890:intron 40.0%
CAAAGAGACTAGAGTTGGAT+GGG + chr6_3:98007754-98007773 None:intergenic 40.0%
ACAAAGAGACTAGAGTTGGA+TGG + chr6_3:98007755-98007774 None:intergenic 40.0%
TTGTTTGCTTGCAGTTGCAA+AGG - chr6_3:98007776-98007795 Msa0967890:intron 40.0%
CTTTGTAGATTGGGTCTAGA+AGG + chr6_3:98008098-98008117 None:intergenic 40.0%
CAATGCGGTCTTTGTAGATT+GGG + chr6_3:98008107-98008126 None:intergenic 40.0%
TCAATGCGGTCTTTGTAGAT+TGG + chr6_3:98008108-98008127 None:intergenic 40.0%
CAGGAGATAAGCAAGAGATT+TGG - chr6_3:98008213-98008232 Msa0967890:intron 40.0%
TGGGATAACCTTGACAAAGT+TGG - chr6_3:98008237-98008256 Msa0967890:intron 40.0%
TCGCTGAAATTGACAAGTCT+CGG + chr6_3:98008315-98008334 None:intergenic 40.0%
CAATGATACTAGTAGCAGGT+GGG + chr6_3:98008371-98008390 None:intergenic 40.0%
CTACCAATGATACTAGTAGC+AGG + chr6_3:98008375-98008394 None:intergenic 40.0%
ACGGTAGTAACAGTAGTAGT+AGG - chr6_3:98008397-98008416 Msa0967890:intron 40.0%
ACAGTAGTAGTAGGACTAAG+AGG - chr6_3:98008406-98008425 Msa0967890:intron 40.0%
TAGTAGTAGGACTAAGAGGA+TGG - chr6_3:98008410-98008429 Msa0967890:intron 40.0%
! GTGGATTGTGCGATAATGTG+AGG + chr6_3:98006024-98006043 None:intergenic 45.0%
!! GAAAACCGTTGTTGGCTTGA+CGG + chr6_3:98006167-98006186 None:intergenic 45.0%
AGGAAGGAGAAAACCGTTGT+TGG + chr6_3:98006175-98006194 None:intergenic 45.0%
! ATAGAGTCTACCTCTGAGGA+AGG + chr6_3:98006191-98006210 None:intergenic 45.0%
AGCTCGTTTATAGCCGATAG+CGG + chr6_3:98006668-98006687 None:intergenic 45.0%
! GCGTGAATATAAATGGTGGG+TGG + chr6_3:98007014-98007033 None:intergenic 45.0%
ACAACCCTCGTATCATAAGC+TGG - chr6_3:98007123-98007142 Msa0967890:intron 45.0%
! ACTAGCCTATGTTGGATTGC+TGG - chr6_3:98007468-98007487 Msa0967890:intron 45.0%
TCTACAAAGACCGCATTGAG+TGG - chr6_3:98008109-98008128 Msa0967890:intron 45.0%
CTACAAAGACCGCATTGAGT+GGG - chr6_3:98008110-98008129 Msa0967890:intron 45.0%
TGCTCCAACCAACTTTGTCA+AGG + chr6_3:98008248-98008267 None:intergenic 45.0%
!! GTTAGGTTGGGTGTTGGTAT+TGG + chr6_3:98008346-98008365 None:intergenic 45.0%
CCAATGATACTAGTAGCAGG+TGG + chr6_3:98008372-98008391 None:intergenic 45.0%
CCACCTGCTACTAGTATCAT+TGG - chr6_3:98008369-98008388 Msa0967890:intron 45.0%
CGAGACAGAAAATGAGATCG+AGG - chr6_3:98008442-98008461 Msa0967890:intron 45.0%
AAATGAAGCGCACCAACAGA+AGG - chr6_3:98008470-98008489 Msa0967890:intron 45.0%
CCACATTGTTGTCCTTCTGT+TGG + chr6_3:98008485-98008504 None:intergenic 45.0%
CCAACAGAAGGACAACAATG+TGG - chr6_3:98008482-98008501 Msa0967890:intron 45.0%
! TTTAGCTTAGGATGCTGCCA+TGG + chr6_3:98008599-98008618 None:intergenic 45.0%
ACCTGAACAGTGGAACGACT+GGG + chr6_3:98006085-98006104 None:intergenic 50.0%
AACCTGAACAGTGGAACGAC+TGG + chr6_3:98006086-98006105 None:intergenic 50.0%
!! CGTTCCACTGTTCAGGTTGT+TGG - chr6_3:98006088-98006107 Msa0967890:three_prime_UTR 50.0%
!! TCCACTGTTCAGGTTGTTGG+TGG - chr6_3:98006091-98006110 Msa0967890:three_prime_UTR 50.0%
ACCACCAACAACCTGAACAG+TGG + chr6_3:98006095-98006114 None:intergenic 50.0%
! ACGGTTTTCTCCTTCCTCAG+AGG - chr6_3:98006178-98006197 Msa0967890:CDS 50.0%
! CTTAAGAGCACGCGAGTTTG+AGG - chr6_3:98008047-98008066 Msa0967890:intron 50.0%
GAGCAAACTCCCACTCAATG+CGG + chr6_3:98008122-98008141 None:intergenic 50.0%
TCTGCTGCTGCTAGATCCAT+TGG - chr6_3:98008171-98008190 Msa0967890:intron 50.0%
TGCTGCTAGATCCATTGGAG+CGG - chr6_3:98008176-98008195 Msa0967890:intron 50.0%
GACCTTCTCGGCACTTCTAA+GGG - chr6_3:98008279-98008298 Msa0967890:intron 50.0%
! TTCTCGGCACTTCTAAGGGA+GGG - chr6_3:98008283-98008302 Msa0967890:intron 50.0%
TGATACTAGTAGCAGGTGGG+TGG + chr6_3:98008368-98008387 None:intergenic 50.0%
!! TGCCATGGTTGATGGCCTTA+CGG + chr6_3:98008584-98008603 None:intergenic 50.0%
TAGGATGCTGCCATGGTTGA+TGG + chr6_3:98008592-98008611 None:intergenic 50.0%
GTGACTGTGAGTGTGTGGAG+TGG + chr6_3:98006043-98006062 None:intergenic 55.0%
ACGCTGTGACTGTGAGTGTG+TGG + chr6_3:98006048-98006067 None:intergenic 55.0%
TGAACAGTGGAACGACTGGG+CGG + chr6_3:98006082-98006101 None:intergenic 55.0%
!! TTGGTGGTGCAGAGTTGCCA+AGG - chr6_3:98006107-98006126 Msa0967890:exon 55.0%
AGAAGAAGGAGGAGTGGCCT+TGG + chr6_3:98006127-98006146 None:intergenic 55.0%
! TTGAGTGGCGGAGAAGAAGG+AGG + chr6_3:98006138-98006157 None:intergenic 55.0%
! CACTTGAGTGGCGGAGAAGA+AGG + chr6_3:98006141-98006160 None:intergenic 55.0%
TGTCGCCGTCAAGCCAACAA+CGG - chr6_3:98006159-98006178 Msa0967890:CDS 55.0%
ACTTGAGGTAGCTCGACGGA+AGG + chr6_3:98008014-98008033 None:intergenic 55.0%
TTCCGTCGAGCTACCTCAAG+TGG - chr6_3:98008013-98008032 Msa0967890:intron 55.0%
TCCGTCGAGCTACCTCAAGT+GGG - chr6_3:98008014-98008033 Msa0967890:intron 55.0%
ACCCACTTGAGGTAGCTCGA+CGG + chr6_3:98008018-98008037 None:intergenic 55.0%
AGCACGCGAGTTTGAGGAGT+GGG - chr6_3:98008053-98008072 Msa0967890:intron 55.0%
CTCAGAATCTGCCGCTCCAA+TGG + chr6_3:98008190-98008209 None:intergenic 55.0%
CGACCTTCTCGGCACTTCTA+AGG - chr6_3:98008278-98008297 Msa0967890:intron 55.0%
!! CTCCCTTAGAAGTGCCGAGA+AGG + chr6_3:98008284-98008303 None:intergenic 55.0%
! CTTCTCGGCACTTCTAAGGG+AGG - chr6_3:98008282-98008301 Msa0967890:intron 55.0%
!! TGGGTGGTTAGGTTGGGTGT+TGG + chr6_3:98008352-98008371 None:intergenic 55.0%
AGCAGGTGGGTGGTTAGGTT+GGG + chr6_3:98008358-98008377 None:intergenic 55.0%
TAGCAGGTGGGTGGTTAGGT+TGG + chr6_3:98008359-98008378 None:intergenic 55.0%
CTAGTAGCAGGTGGGTGGTT+AGG + chr6_3:98008363-98008382 None:intergenic 55.0%
GCCATTGCCAATCCATTCCC+CGG - chr6_3:98008543-98008562 Msa0967890:CDS 55.0%
!! TCCGGGGAATGGATTGGCAA+TGG + chr6_3:98008547-98008566 None:intergenic 55.0%
ACGTCAGGCTCTTCTCCGTA+AGG - chr6_3:98008566-98008585 Msa0967890:CDS 55.0%
CTCCGTAAGGCCATCAACCA+TGG - chr6_3:98008579-98008598 Msa0967890:CDS 55.0%
GCCCAGTCGTTCCACTGTTC+AGG - chr6_3:98006081-98006100 Msa0967890:three_prime_UTR 60.0%
TGGCGGAGAAGAAGGAGGAG+TGG + chr6_3:98006133-98006152 None:intergenic 60.0%
TGACGGCGACACTTGAGTGG+CGG + chr6_3:98006150-98006169 None:intergenic 60.0%
GCTTGACGGCGACACTTGAG+TGG + chr6_3:98006153-98006172 None:intergenic 60.0%
GAGCACGCGAGTTTGAGGAG+TGG - chr6_3:98008052-98008071 Msa0967890:intron 60.0%
AGCGGCAGATTCTGAGCTGC+AGG - chr6_3:98008194-98008213 Msa0967890:intron 60.0%
CTGACGTCCGGGGAATGGAT+TGG + chr6_3:98008553-98008572 None:intergenic 60.0%
CAATCCATTCCCCGGACGTC+AGG - chr6_3:98008551-98008570 Msa0967890:CDS 60.0%
ACGGAGAAGAGCCTGACGTC+CGG + chr6_3:98008565-98008584 None:intergenic 60.0%
GTGGAACGACTGGGCGGAGA+AGG + chr6_3:98006076-98006095 None:intergenic 65.0%
AGAGCCTGACGTCCGGGGAA+TGG + chr6_3:98008558-98008577 None:intergenic 65.0%
GGAGAAGAGCCTGACGTCCG+GGG + chr6_3:98008563-98008582 None:intergenic 65.0%
CGGAGAAGAGCCTGACGTCC+GGG + chr6_3:98008564-98008583 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98005973 98008762 98005973 ID=Msa0967890;Name=Msa0967890
chr6_3 mRNA 98005973 98008762 98005973 ID=Msa0967890-mRNA-1;Parent=Msa0967890;Name=Msa0967890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=13|0|0.66|0.66|1|1|3|145|349
chr6_3 exon 98005973 98006945 98005973 ID=Msa0967890-mRNA-1:exon:18314;Parent=Msa0967890-mRNA-1
chr6_3 exon 98008376 98008383 98008376 ID=Msa0967890-mRNA-1:exon:18313;Parent=Msa0967890-mRNA-1
chr6_3 exon 98008536 98008762 98008536 ID=Msa0967890-mRNA-1:exon:18312;Parent=Msa0967890-mRNA-1
chr6_3 five_prime_UTR 98008750 98008762 98008750 ID=Msa0967890-mRNA-1:five_prime_utr;Parent=Msa0967890-mRNA-1
chr6_3 CDS 98008536 98008749 98008536 ID=Msa0967890-mRNA-1:cds;Parent=Msa0967890-mRNA-1
chr6_3 CDS 98008376 98008383 98008376 ID=Msa0967890-mRNA-1:cds;Parent=Msa0967890-mRNA-1
chr6_3 CDS 98006118 98006945 98006118 ID=Msa0967890-mRNA-1:cds;Parent=Msa0967890-mRNA-1
chr6_3 three_prime_UTR 98005973 98006117 98005973 ID=Msa0967890-mRNA-1:three_prime_utr;Parent=Msa0967890-mRNA-1
Gene Sequence

>Msa0967890

ATGCCCAAACCCAATCTTTTAATTTGGTTTCACAGCCTCACATTATCGCACAATCCACTCCACACACTCACAGTCACAGCGTCATCTCCTTCTCCGCCCAGTCGTTCCACTGTTCAGGTTGTTGGTGGTGCAGAGTTGCCAAGGCCACTCCTCCTTCTTCTCCGCCACTCAAGTGTCGCCGTCAAGCCAACAACGGTTTTCTCCTTCCTCAGAGAGTCAAGATTGCAAAGGCGTTCATATCATCTTCATCTCATGCATCTGTTATTGCAGCAGCAGCATCATGTTTACTTTATGTTTCGGGACACTTGTTGTATAACAAATCAAAAGCAGCGTTATGTGGGAGTGACAGTAACATCGTTGAGACGCAATTCAGAAAGAGAAATTAAACTGGCCCGAGACAGAATAATAGATTTCGGAAAATACAAGGGGAAGATGTTGGGAAGCCTTCCGTCGAGCTACCTCAAGTGGGTTTCAAAAAACTTAAGAGCACGCGAGTTTGAGGAGTGGGCAATTCTTGCAGATCAAGTCCTTCTAGACCCAATCTACAAAGACCGCATTGAGTGGGAGTTTGCTCTTAATGTGTTAAATGGCAACAACATTTCTTCTGCTGCTGCTAGATCCATTGGAGCGGCAGATTCTGAGCTGCAGGAGATAAGCAAGAGATTTGGTTGGGATAACCTTGACAAAGTTGGTTGGAGCAAAGTTGATTTCGACCTTCTCGGCACTTCTAAGGGAGGGAGAATTCCGAGACTTGTCAATTTCAGCGACAGTGACACCAATACCAACACCCAACCTAACCACCCACCTGCTACTAGTATCATTGGTAGCAACGGTAGTAACAGTAGTAGTAGGACTAAGAGGATGGAGAGAAGAGCGAGACAGAAAATGAGATCGAGGACGACAAATGAAGCGCACCAACAGAAGGACAACAATGTGGTTGATATTGAAGAAGTTGAAGATGATAACATTAATATAGCCATTGCCAATCCATTCCCCGGACGTCAGGCTCTTCTCCGTAAGGCCATCAACCATGGCAGCATCCTAAGCTAA

Protein sequence

>Msa0967890

MPKPNLLIWFHSLTLSHNPLHTLTVTASSPSPPSRSTVQVVGGAELPRPLLLLLRHSSVAVKPTTVFSFLRESRLQRRSYHLHLMHLLLQQQHHVYFMFRDTCCITNQKQRYVGVTVTSLRRNSEREIKLARDRIIDFGKYKGKMLGSLPSSYLKWVSKNLRAREFEEWAILADQVLLDPIYKDRIEWEFALNVLNGNNISSAAARSIGAADSELQEISKRFGWDNLDKVGWSKVDFDLLGTSKGGRIPRLVNFSDSDTNTNTQPNHPPATSIIGSNGSNSSSRTKRMERRARQKMRSRTTNEAHQQKDNNVVDIEEVEDDNINIAIANPFPGRQALLRKAINHGSILS*