AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0585810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585810 MtrunA17_Chr4g0001381 96.829 473 14 1 1 473 1 472 0.0 955
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585810 AT1G15980.1 74.118 425 107 3 50 472 37 460 0.0 636

Find 137 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGCTACCCCTTGAAATA+TGG 0.211000 4_2:-6897095 Msa0585810:CDS
TCCAATGATTCAGTTGATTA+AGG 0.219521 4_2:-6898177 Msa0585810:CDS
CAGGATTAATTTCTAAGTTT+TGG 0.234758 4_2:-6898885 Msa0585810:five_prime_UTR
GATTAACCATCATTGATAAT+TGG 0.241030 4_2:-6898787 Msa0585810:five_prime_UTR
TAAGAAAATCTTAAATCTTC+AGG 0.255796 4_2:-6898904 Msa0585810:five_prime_UTR
AGGGAAGAGAGCGAGGGTTC+TGG 0.276282 4_2:-6895859 Msa0585810:three_prime_UTR
CATGATCTTGAGCACAAAAT+TGG 0.289677 4_2:-6897729 Msa0585810:CDS
CCTTTAGGATTGAAAGTTAG+AGG 0.300598 4_2:-6898260 Msa0585810:CDS
TCCTTTCTTTACACCTGCTT+TGG 0.309889 4_2:+6897188 None:intergenic
GAAGTTTCCAGCTGGTTATA+TGG 0.315816 4_2:-6898294 Msa0585810:CDS
AACGAACCATATTCGATATT+CGG 0.330076 4_2:+6898389 None:intergenic
AATCCATAGGGATTGTTGTT+TGG 0.334719 4_2:+6898320 None:intergenic
TTTGGATTATCCGGCGGCCT+TGG 0.336805 4_2:+6898338 None:intergenic
CTCCCGCGGCATTCACATTC+GGG 0.338856 4_2:+6897642 None:intergenic
AGGTGTTGTTGTGTGGTATC+TGG 0.341951 4_2:-6898227 Msa0585810:CDS
AAGTTAGAGGTGATGTTAGA+AGG 0.352974 4_2:-6898247 Msa0585810:CDS
TCCTTAATCAACTGAATCAT+TGG 0.362538 4_2:+6898176 None:intergenic
TTTGTAGTGAAATGTGAAAA+TGG 0.366889 4_2:+6898569 None:intergenic
GCTCCCGCGGCATTCACATT+CGG 0.367111 4_2:+6897641 None:intergenic
CATCATTGATAATTGGTAAC+AGG 0.371816 4_2:-6898780 Msa0585810:five_prime_UTR
GTTGCTTTAATTTGCTGAAA+AGG 0.372131 4_2:+6895627 None:intergenic
TCTGAAAGATTTGTACTATC+AGG 0.377252 4_2:+6897590 None:intergenic
GGAAGATATATTGTGATTCA+TGG 0.391732 4_2:-6897168 Msa0585810:CDS
AGTTGCAGCCATTGAATTTG+AGG 0.399232 4_2:+6898625 None:intergenic
GGATTGTTGTTTGGATTATC+CGG 0.400677 4_2:+6898329 None:intergenic
CACTTAAAATATCACTTTCA+AGG 0.403345 4_2:-6897242 Msa0585810:CDS
GAAGACCCGAATATCGAATA+TGG 0.403352 4_2:-6898395 Msa0585810:CDS
ACAAATTAATGTTTCCTTCG+AGG 0.404430 4_2:-6895772 Msa0585810:three_prime_UTR
CTGTTACCAATTATCAATGA+TGG 0.413874 4_2:+6898781 None:intergenic
ATGGTTGAGATAGCTCCTTT+AGG 0.414492 4_2:-6898275 Msa0585810:CDS
TCAAGGGGTAGCAAGCTATC+AGG 0.415406 4_2:+6897102 None:intergenic
CTTGCTACCCCTTGAAATAT+GGG 0.418862 4_2:-6897094 Msa0585810:CDS
CAATGAAACATTGGTTGGAT+AGG 0.419961 4_2:+6898526 None:intergenic
CTCGCTCTCTTCCCTCTCTT+AGG 0.421657 4_2:+6895867 None:intergenic
ACGAACCATATTCGATATTC+GGG 0.425608 4_2:+6898390 None:intergenic
TTTCAAAACCTTACCTATAG+TGG 0.431094 4_2:-6898834 Msa0585810:five_prime_UTR
AATGTGAATGCCGCGGGAGC+AGG 0.431918 4_2:-6897638 Msa0585810:CDS
AGTTGAATAAGAATGTTAGA+TGG 0.432160 4_2:-6898094 Msa0585810:CDS
TTTGAAAACCTCAAATTCAA+TGG 0.433427 4_2:-6898633 Msa0585810:exon
CAAAGGCCACAATGCAGTCT+AGG 0.436420 4_2:-6897131 Msa0585810:CDS
ATCGATCAACTTCCCCGTCT+TGG 0.442656 4_2:+6895953 None:intergenic
TCATTCCACATGAGAAAGAA+AGG 0.445005 4_2:-6896538 Msa0585810:CDS
CAATTTCAGCCCATATTTCA+AGG 0.445698 4_2:+6897085 None:intergenic
GGGTCTTCTCCATCGTCAAA+AGG 0.459837 4_2:+6898410 None:intergenic
GGTGTTCAGATTGATGTTGT+GGG 0.460104 4_2:-6898143 Msa0585810:CDS
GTTAAAACTTATAGTAAAGA+AGG 0.461171 4_2:-6895806 Msa0585810:three_prime_UTR
TCATAAATGACTACCACTAT+AGG 0.464005 4_2:+6898821 None:intergenic
GGCTCAGGAAACTCATCGTC+CGG 0.465768 4_2:+6898056 None:intergenic
GAGCTGAATTGCAGCGGTAT+TGG 0.468926 4_2:+6896187 None:intergenic
GAAAATGTTGAGGAAATAGT+TGG 0.470649 4_2:-6896515 Msa0585810:CDS
AGCACAAAATTGGCCGGAGT+TGG 0.475394 4_2:-6897719 Msa0585810:CDS
CTGAAATTGCTGATGCTGTA+AGG 0.476552 4_2:-6897071 Msa0585810:intron
TGGTGTTCAGATTGATGTTG+TGG 0.478619 4_2:-6898144 Msa0585810:CDS
AAAGGCCACAATGCAGTCTA+GGG 0.479022 4_2:-6897130 Msa0585810:CDS
ATCACTTTCAAGGAAGTTGA+AGG 0.487703 4_2:-6897232 Msa0585810:CDS
CCTCTAACTTTCAATCCTAA+AGG 0.488882 4_2:+6898260 None:intergenic
AAGGAAGTTGAAGGAAGTTG+TGG 0.489133 4_2:-6897223 Msa0585810:CDS
TCGAACTAGGTATCATCAAA+TGG 0.492338 4_2:-6897316 Msa0585810:intron
GGGAAACAAGTTTGTTCCGC+AGG 0.498578 4_2:-6896006 Msa0585810:CDS
TCAGTATACTCAGCAGGCTC+AGG 0.500874 4_2:+6898041 None:intergenic
CTTCATCACCACCCCTGGAC+AGG 0.503827 4_2:-6896474 Msa0585810:intron
ATAATCTTCATCACCACCCC+TGG 0.505329 4_2:-6896479 Msa0585810:CDS
ACATTGGTTGGATAGGTTGA+AGG 0.506110 4_2:+6898533 None:intergenic
GGTCTTCTCCATCGTCAAAA+GGG 0.506897 4_2:+6898411 None:intergenic
AATCCAAACAACAATCCCTA+TGG 0.508106 4_2:-6898323 Msa0585810:CDS
GTTTCGAAACGTTCCACGGC+AGG 0.511476 4_2:-6897274 Msa0585810:CDS
ATCTCAACCATATAACCAGC+TGG 0.513445 4_2:+6898287 None:intergenic
GTTAACAATGAAACATTGGT+TGG 0.517797 4_2:+6898521 None:intergenic
GTTGAATAAGAATGTTAGAT+GGG 0.518616 4_2:-6898093 Msa0585810:CDS
GGTATCATCAAATGGAAGAC+TGG 0.518755 4_2:-6897308 Msa0585810:CDS
GGTGGTGATGAAGATTATAG+AGG 0.521977 4_2:+6896484 None:intergenic
GAAGATATATTGTGATTCAT+GGG 0.526201 4_2:-6897167 Msa0585810:CDS
GCAATCTTGTGCATGTGATA+AGG 0.531250 4_2:+6895587 None:intergenic
ACCAAAGCAGGTGTAAAGAA+AGG 0.531255 4_2:-6897189 Msa0585810:CDS
TGGAAACTTCAAGAATCCAT+AGG 0.533581 4_2:+6898307 None:intergenic
AGATACTTGAGTACCTGTCC+AGG 0.536335 4_2:+6896461 None:intergenic
TGAAGTTAACAATGAAACAT+TGG 0.536410 4_2:+6898517 None:intergenic
AATTTCAGCCCATATTTCAA+GGG 0.536815 4_2:+6897086 None:intergenic
TACCCGAATGTGAATGCCGC+GGG 0.541007 4_2:-6897644 Msa0585810:CDS
GCTCTTATTAATGACTCAGC+TGG 0.542037 4_2:-6896221 Msa0585810:CDS
CATTTCTTCTCTTCTGCCTG+CGG 0.542414 4_2:+6895990 None:intergenic
GGATTCTTGAAGTTTCCAGC+TGG 0.544542 4_2:-6898302 Msa0585810:CDS
GGTTGGATAGGTTGAAGGAA+TGG 0.547205 4_2:+6898538 None:intergenic
GAAGTTGAAGGAAGTTGTGG+AGG 0.547515 4_2:-6897220 Msa0585810:CDS
ATCTTGAGCACAAAATTGGC+CGG 0.552537 4_2:-6897725 Msa0585810:CDS
TGCCGTGGAACGTTTCGAAA+CGG 0.553199 4_2:+6897276 None:intergenic
TAGAATGTGTGGAAATGTGT+TGG 0.553680 4_2:+6898714 None:intergenic
ACAACATCAATCTGAACACC+AGG 0.556920 4_2:+6898146 None:intergenic
CTAAGAGAGGGAAGAGAGCG+AGG 0.558962 4_2:-6895866 Msa0585810:three_prime_UTR
CATTCCACATGAGAAAGAAA+GGG 0.559120 4_2:-6896537 Msa0585810:CDS
GTGGAAATGTGTTGGATAAG+TGG 0.559962 4_2:+6898722 None:intergenic
GATGTTGTGGGTTCTGAGAG+AGG 0.559979 4_2:-6898131 Msa0585810:CDS
GAGGAGAGATACACCAAAGC+AGG 0.560047 4_2:-6897201 Msa0585810:CDS
GTAAACAAGACGAGGATCCA+AGG 0.561447 4_2:-6898355 Msa0585810:CDS
TGTTAGAAGGTGTTGTTGTG+TGG 0.566688 4_2:-6898234 Msa0585810:CDS
ATATGCTGCATGGCCAACTC+CGG 0.567278 4_2:+6897706 None:intergenic
TGATTCAGTTGATTAAGGAT+AGG 0.569315 4_2:-6898172 Msa0585810:CDS
AATGACTACCACTATAGGTA+AGG 0.571292 4_2:+6898826 None:intergenic
GACCGTTTCGAAACGTTCCA+CGG 0.572474 4_2:-6897278 Msa0585810:CDS
ACAAAATCAGTATACTCAGC+AGG 0.575460 4_2:+6898035 None:intergenic
GAAAGAAAGGGAAAATGTTG+AGG 0.576655 4_2:-6896525 Msa0585810:CDS
GTTGATCGATATAGATGTTG+AGG 0.578479 4_2:-6895940 Msa0585810:CDS
CATCAAATGGAAGACTGGCT+AGG 0.582960 4_2:-6897303 Msa0585810:CDS
GGAAACTTCAAGAATCCATA+GGG 0.585870 4_2:+6898308 None:intergenic
CATTGTGATATCATCCAAGA+CGG 0.586410 4_2:-6895967 Msa0585810:CDS
TTGATTAAGGATAGGTACCC+TGG 0.587419 4_2:-6898164 Msa0585810:CDS
TGGAAATGTGTTGGATAAGT+GGG 0.591962 4_2:+6898723 None:intergenic
TGGGATACAATCAGACTCAA+AGG 0.593935 4_2:-6897148 Msa0585810:CDS
TCGTCAAAAGGGTCTAGCCA+TGG 0.597498 4_2:+6898422 None:intergenic
GAGACTAGAACTAGAATGTG+TGG 0.599218 4_2:+6898703 None:intergenic
GTTGAATTGTAACAATGTGA+TGG 0.600380 4_2:+6898485 None:intergenic
ATGTTGTGGGTTCTGAGAGA+GGG 0.600619 4_2:-6898130 Msa0585810:CDS
ATTGTGATATCATCCAAGAC+GGG 0.603268 4_2:-6895966 Msa0585810:CDS
ATTTGCGAGCTGAATTGCAG+CGG 0.608565 4_2:+6896181 None:intergenic
GATAGTACAAATCTTTCAGA+GGG 0.617454 4_2:-6897587 Msa0585810:CDS
AGTGGTGGTACAACCTGCCG+TGG 0.618807 4_2:+6897261 None:intergenic
AGACGAGGATCCAAGGCCGC+CGG 0.626429 4_2:-6898348 Msa0585810:CDS
TGATAGTACAAATCTTTCAG+AGG 0.632241 4_2:-6897588 Msa0585810:CDS
AATTGTAACAATGTGATGGA+TGG 0.632372 4_2:+6898489 None:intergenic
TAAGAGAGGGAAGAGAGCGA+GGG 0.633267 4_2:-6895865 Msa0585810:three_prime_UTR
TTAAGTCGTTGTGCTAACTG+TGG 0.634359 4_2:-6895828 Msa0585810:three_prime_UTR
TGATGGTTAATCTTCACTTG+TGG 0.638151 4_2:+6898798 None:intergenic
GATACTTGAGTACCTGTCCA+GGG 0.638272 4_2:+6896462 None:intergenic
CTTGAGTACCTGTCCAGGGG+TGG 0.638966 4_2:+6896466 None:intergenic
AGTACAAATCTTTCAGAGGG+AGG 0.642667 4_2:-6897584 Msa0585810:CDS
ATTTCAGCCCATATTTCAAG+GGG 0.643244 4_2:+6897087 None:intergenic
TGTTGTTGTGTGGTATCTGG+TGG 0.649242 4_2:-6898224 Msa0585810:CDS
TTCAGACGGTAAACAAGACG+AGG 0.660676 4_2:-6898363 Msa0585810:CDS
TTGTTGTTTGGATTATCCGG+CGG 0.666048 4_2:+6898332 None:intergenic
ATCACCCCTAGACTGCATTG+TGG 0.675919 4_2:+6897125 None:intergenic
TCATGAATAAATATGCTGCA+TGG 0.676264 4_2:+6897696 None:intergenic
ATACTTGAGTACCTGTCCAG+GGG 0.689398 4_2:+6896463 None:intergenic
AAGGCCACAATGCAGTCTAG+GGG 0.695170 4_2:-6897129 Msa0585810:CDS
TTGTGATATCATCCAAGACG+GGG 0.707166 4_2:-6895965 Msa0585810:CDS
TTACCCGAATGTGAATGCCG+CGG 0.711444 4_2:-6897645 Msa0585810:CDS
ATAACTAACTCTATCTCGCG+CGG 0.715093 4_2:+6897670 None:intergenic
CAACATCAATCTGAACACCA+GGG 0.751591 4_2:+6898147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATACAAAAAAGATTAAA+TGG - chr4_2:6895834-6895853 Msa0585810:three_prime_UTR 10.0%
!! TTATACAAAAAAGATTAAAT+GGG - chr4_2:6895835-6895854 Msa0585810:three_prime_UTR 10.0%
!!! TTTGAAAGTACTAAATTTTT+AGG + chr4_2:6895735-6895754 None:intergenic 15.0%
!! ATATATTAGAAATTCGATAT+AGG - chr4_2:6896786-6896805 Msa0585810:intron 15.0%
!!! AAACATTTTTAATGATCTAA+CGG + chr4_2:6897095-6897114 None:intergenic 15.0%
!! TCAAATAAACTAATTCAAAA+AGG + chr4_2:6897642-6897661 None:intergenic 15.0%
!! TATGGAGAAATTATAAAAAT+AGG + chr4_2:6897750-6897769 None:intergenic 15.0%
!!! TTTCTCAACTATTATTTTTA+CGG + chr4_2:6898884-6898903 None:intergenic 15.0%
!! TAAGAAAATCTTAAATCTTC+AGG - chr4_2:6895678-6895697 Msa0585810:three_prime_UTR 20.0%
!!! TGAAAATGGTTTTGAAATTT+TGG + chr4_2:6896002-6896021 None:intergenic 20.0%
!!! TATTTTTCTTTAGAAATTCG+AGG - chr4_2:6896629-6896648 Msa0585810:intron 20.0%
!!! TAACAAAGTCTTATATGTTA+CGG + chr4_2:6897601-6897620 None:intergenic 20.0%
!!! GTTTTCATAAGCTATTATTA+TGG + chr4_2:6897768-6897787 None:intergenic 20.0%
!! GGTGTTAATGTATAAAAATA+AGG + chr4_2:6897810-6897829 None:intergenic 20.0%
!! AACAATTAACATATGAATAC+AGG - chr4_2:6898002-6898021 Msa0585810:intron 20.0%
!! ACAATTAACATATGAATACA+GGG - chr4_2:6898003-6898022 Msa0585810:intron 20.0%
!! AACATTATAATTCATGTGAA+TGG + chr4_2:6898453-6898472 None:intergenic 20.0%
!! AATTATAATGTTTCCCTAAA+CGG - chr4_2:6898461-6898480 Msa0585810:CDS 20.0%
!! GTTAAAACTTATAGTAAAGA+AGG - chr4_2:6898776-6898795 Msa0585810:five_prime_UTR 20.0%
!! CAGGATTAATTTCTAAGTTT+TGG - chr4_2:6895697-6895716 Msa0585810:three_prime_UTR 25.0%
!! GATTAACCATCATTGATAAT+TGG - chr4_2:6895795-6895814 Msa0585810:three_prime_UTR 25.0%
!!! GAATTTGAGGTTTTCAAATT+TGG + chr4_2:6895947-6895966 None:intergenic 25.0%
! TTTGAAAACCTCAAATTCAA+TGG - chr4_2:6895949-6895968 Msa0585810:CDS 25.0%
! TTTGTAGTGAAATGTGAAAA+TGG + chr4_2:6896016-6896035 None:intergenic 25.0%
! TGAAGTTAACAATGAAACAT+TGG + chr4_2:6896068-6896087 None:intergenic 25.0%
! AGTTGAATAAGAATGTTAGA+TGG - chr4_2:6896488-6896507 Msa0585810:CDS 25.0%
! GTTGAATAAGAATGTTAGAT+GGG - chr4_2:6896489-6896508 Msa0585810:CDS 25.0%
!! TTTGAAGTCAAACATATGAT+TGG - chr4_2:6897134-6897153 Msa0585810:CDS 25.0%
! ATAGCATTTAGACTTACATT+TGG - chr4_2:6897192-6897211 Msa0585810:CDS 25.0%
!! ACGAAATTTTTCTTTAACTG+AGG - chr4_2:6897224-6897243 Msa0585810:CDS 25.0%
!!! CTTGAAAGTGATATTTTAAG+TGG + chr4_2:6897342-6897361 None:intergenic 25.0%
! CACTTAAAATATCACTTTCA+AGG - chr4_2:6897340-6897359 Msa0585810:intron 25.0%
! GAAGATATATTGTGATTCAT+GGG - chr4_2:6897415-6897434 Msa0585810:intron 25.0%
! TGTTATTATTGTTACATCGA+TGG - chr4_2:6897616-6897635 Msa0585810:CDS 25.0%
! TCTACTAACATAAACATTTG+TGG - chr4_2:6897667-6897686 Msa0585810:CDS 25.0%
! CTACTAACATAAACATTTGT+GGG - chr4_2:6897668-6897687 Msa0585810:CDS 25.0%
!! ATTGTCTAGTATGTATGTTT+TGG - chr4_2:6897968-6897987 Msa0585810:intron 25.0%
!!! AAATTGAGCAACAGTTTTAT+GGG + chr4_2:6898523-6898542 None:intergenic 25.0%
!! TAAATTGAGCAACAGTTTTA+TGG + chr4_2:6898524-6898543 None:intergenic 25.0%
! AGGATACTGATAAAAAAAGT+AGG - chr4_2:6898830-6898849 Msa0585810:five_prime_UTR 25.0%
! TGTGACAAAAAAAAGAAAGA+TGG - chr4_2:6898930-6898949 Msa0585810:five_prime_UTR 25.0%
TTTCAAAACCTTACCTATAG+TGG - chr4_2:6895748-6895767 Msa0585810:three_prime_UTR 30.0%
TCATAAATGACTACCACTAT+AGG + chr4_2:6895764-6895783 None:intergenic 30.0%
CTGTTACCAATTATCAATGA+TGG + chr4_2:6895804-6895823 None:intergenic 30.0%
! CATCATTGATAATTGGTAAC+AGG - chr4_2:6895802-6895821 Msa0585810:three_prime_UTR 30.0%
GTTAACAATGAAACATTGGT+TGG + chr4_2:6896064-6896083 None:intergenic 30.0%
! AATTGTAACAATGTGATGGA+TGG + chr4_2:6896096-6896115 None:intergenic 30.0%
GTTGAATTGTAACAATGTGA+TGG + chr4_2:6896100-6896119 None:intergenic 30.0%
AACGAACCATATTCGATATT+CGG + chr4_2:6896196-6896215 None:intergenic 30.0%
TCCAATGATTCAGTTGATTA+AGG - chr4_2:6896405-6896424 Msa0585810:intron 30.0%
TCCTTAATCAACTGAATCAT+TGG + chr4_2:6896409-6896428 None:intergenic 30.0%
TGATTCAGTTGATTAAGGAT+AGG - chr4_2:6896410-6896429 Msa0585810:intron 30.0%
TTATGTTATGCTTACAGAGT+AGG - chr4_2:6896822-6896841 Msa0585810:intron 30.0%
TCATGAATAAATATGCTGCA+TGG + chr4_2:6896889-6896908 None:intergenic 30.0%
TCTGAAAGATTTGTACTATC+AGG + chr4_2:6896995-6897014 None:intergenic 30.0%
TGATAGTACAAATCTTTCAG+AGG - chr4_2:6896994-6897013 Msa0585810:intron 30.0%
GATAGTACAAATCTTTCAGA+GGG - chr4_2:6896995-6897014 Msa0585810:intron 30.0%
ATGTAAGTCTAAATGCTATC+AGG + chr4_2:6897191-6897210 None:intergenic 30.0%
!! GAAAGTGATATTTTAAGTGG+TGG + chr4_2:6897339-6897358 None:intergenic 30.0%
GGAAGATATATTGTGATTCA+TGG - chr4_2:6897414-6897433 Msa0585810:intron 30.0%
AATTTCAGCCCATATTTCAA+GGG + chr4_2:6897499-6897518 None:intergenic 30.0%
!! TAGAGAGACTCTATTTTAGA+AGG + chr4_2:6897549-6897568 None:intergenic 30.0%
AAGTCGAAAAGCTTAAATGA+TGG + chr4_2:6897574-6897593 None:intergenic 30.0%
AGCATACACGATTATCATAT+AGG + chr4_2:6897831-6897850 None:intergenic 30.0%
TTTGATGAACACAGTTATGT+AGG + chr4_2:6897907-6897926 None:intergenic 30.0%
ACAATGACAGAATGAATACA+AGG + chr4_2:6897953-6897972 None:intergenic 30.0%
GAAAATGTTGAGGAAATAGT+TGG - chr4_2:6898067-6898086 Msa0585810:CDS 30.0%
! TATTTTGCATGCAACAAACT+TGG - chr4_2:6898150-6898169 Msa0585810:CDS 30.0%
TGTGAATGGTAAAATTACCT+AGG + chr4_2:6898439-6898458 None:intergenic 30.0%
!!! ACTATTTTGCTCTAAAGAGA+AGG - chr4_2:6898555-6898574 Msa0585810:CDS 30.0%
!!! CTATTTTGCTCTAAAGAGAA+GGG - chr4_2:6898556-6898575 Msa0585810:CDS 30.0%
ACAAATTAATGTTTCCTTCG+AGG - chr4_2:6898810-6898829 Msa0585810:five_prime_UTR 30.0%
!!! TTTTTTATCAGTATCCTCGA+AGG + chr4_2:6898827-6898846 None:intergenic 30.0%
!! GTTGCTTTAATTTGCTGAAA+AGG + chr4_2:6898958-6898977 None:intergenic 30.0%
AATGACTACCACTATAGGTA+AGG + chr4_2:6895759-6895778 None:intergenic 35.0%
TGATGGTTAATCTTCACTTG+TGG + chr4_2:6895787-6895806 None:intergenic 35.0%
TGGAAATGTGTTGGATAAGT+GGG + chr4_2:6895862-6895881 None:intergenic 35.0%
TAGAATGTGTGGAAATGTGT+TGG + chr4_2:6895871-6895890 None:intergenic 35.0%
! CAATGAAACATTGGTTGGAT+AGG + chr4_2:6896059-6896078 None:intergenic 35.0%
ATGCCAAAAAGAACAATCCA+TGG - chr4_2:6896143-6896162 Msa0585810:intron 35.0%
!! TAGCCATGGATTGTTCTTTT+TGG + chr4_2:6896149-6896168 None:intergenic 35.0%
ACGAACCATATTCGATATTC+GGG + chr4_2:6896195-6896214 None:intergenic 35.0%
!! TATGGTTCGTTGTTTTCAGA+CGG - chr4_2:6896205-6896224 Msa0585810:CDS 35.0%
!! GGATTGTTGTTTGGATTATC+CGG + chr4_2:6896256-6896275 None:intergenic 35.0%
AATCCAAACAACAATCCCTA+TGG - chr4_2:6896259-6896278 Msa0585810:intron 35.0%
! AATCCATAGGGATTGTTGTT+TGG + chr4_2:6896265-6896284 None:intergenic 35.0%
GGAAACTTCAAGAATCCATA+GGG + chr4_2:6896277-6896296 None:intergenic 35.0%
TGGAAACTTCAAGAATCCAT+AGG + chr4_2:6896278-6896297 None:intergenic 35.0%
CCTCTAACTTTCAATCCTAA+AGG + chr4_2:6896325-6896344 None:intergenic 35.0%
!! CCTTTAGGATTGAAAGTTAG+AGG - chr4_2:6896322-6896341 Msa0585810:intron 35.0%
AAGTTAGAGGTGATGTTAGA+AGG - chr4_2:6896335-6896354 Msa0585810:intron 35.0%
!! ATGGGCTAATGTTTTTGATC+CGG - chr4_2:6896507-6896526 Msa0585810:CDS 35.0%
ACAAAATCAGTATACTCAGC+AGG + chr4_2:6896550-6896569 None:intergenic 35.0%
!!! GCTGAGTATACTGATTTTGT+TGG - chr4_2:6896550-6896569 Msa0585810:CDS 35.0%
! TGATTTTGTTGGTCAGCTAA+AGG - chr4_2:6896561-6896580 Msa0585810:CDS 35.0%
TTTGCCTGCTATACTTTCTA+AGG - chr4_2:6896760-6896779 Msa0585810:intron 35.0%
! TGTACCTTAGAAAGTATAGC+AGG + chr4_2:6896767-6896786 None:intergenic 35.0%
CATGATCTTGAGCACAAAAT+TGG - chr4_2:6896853-6896872 Msa0585810:intron 35.0%
TTCGACAAACTCATCGAAAA+TGG + chr4_2:6897251-6897270 None:intergenic 35.0%
TCGAACTAGGTATCATCAAA+TGG - chr4_2:6897266-6897285 Msa0585810:CDS 35.0%
ATCACTTTCAAGGAAGTTGA+AGG - chr4_2:6897350-6897369 Msa0585810:intron 35.0%
ATTTCAGCCCATATTTCAAG+GGG + chr4_2:6897498-6897517 None:intergenic 35.0%
CAATTTCAGCCCATATTTCA+AGG + chr4_2:6897500-6897519 None:intergenic 35.0%
AATAGGCTGAAAGCAACTTA+TGG + chr4_2:6897733-6897752 None:intergenic 35.0%
TCATGTGGAATGACAAAAAG+TGG + chr4_2:6898037-6898056 None:intergenic 35.0%
TCATTCCACATGAGAAAGAA+AGG - chr4_2:6898044-6898063 Msa0585810:CDS 35.0%
CATTCCACATGAGAAAGAAA+GGG - chr4_2:6898045-6898064 Msa0585810:CDS 35.0%
! TTTTCCCTTTCTTTCTCATG+TGG + chr4_2:6898052-6898071 None:intergenic 35.0%
GAAAGAAAGGGAAAATGTTG+AGG - chr4_2:6898057-6898076 Msa0585810:CDS 35.0%
AAACCATACAAACACGGTTA+GGG + chr4_2:6898333-6898352 None:intergenic 35.0%
TAAACCATACAAACACGGTT+AGG + chr4_2:6898334-6898353 None:intergenic 35.0%
!! CTTAATCAATGTGCCGTTTA+GGG + chr4_2:6898477-6898496 None:intergenic 35.0%
CATTGTGATATCATCCAAGA+CGG - chr4_2:6898615-6898634 Msa0585810:CDS 35.0%
ATTGTGATATCATCCAAGAC+GGG - chr4_2:6898616-6898635 Msa0585810:CDS 35.0%
GTTGATCGATATAGATGTTG+AGG - chr4_2:6898642-6898661 Msa0585810:five_prime_UTR 35.0%
GTGGAAATGTGTTGGATAAG+TGG + chr4_2:6895863-6895882 None:intergenic 40.0%
GAGACTAGAACTAGAATGTG+TGG + chr4_2:6895882-6895901 None:intergenic 40.0%
AGTTGCAGCCATTGAATTTG+AGG + chr4_2:6895960-6895979 None:intergenic 40.0%
! ACATTGGTTGGATAGGTTGA+AGG + chr4_2:6896052-6896071 None:intergenic 40.0%
GAAGACCCGAATATCGAATA+TGG - chr4_2:6896187-6896206 Msa0585810:CDS 40.0%
!! TTGTTGTTTGGATTATCCGG+CGG + chr4_2:6896253-6896272 None:intergenic 40.0%
GAAGTTTCCAGCTGGTTATA+TGG - chr4_2:6896288-6896307 Msa0585810:intron 40.0%
ATCTCAACCATATAACCAGC+TGG + chr4_2:6896298-6896317 None:intergenic 40.0%
ATGGTTGAGATAGCTCCTTT+AGG - chr4_2:6896307-6896326 Msa0585810:intron 40.0%
!! TGTTAGAAGGTGTTGTTGTG+TGG - chr4_2:6896348-6896367 Msa0585810:intron 40.0%
TTGATTAAGGATAGGTACCC+TGG - chr4_2:6896418-6896437 Msa0585810:intron 40.0%
CAACATCAATCTGAACACCA+GGG + chr4_2:6896438-6896457 None:intergenic 40.0%
ACAACATCAATCTGAACACC+AGG + chr4_2:6896439-6896458 None:intergenic 40.0%
TGGTGTTCAGATTGATGTTG+TGG - chr4_2:6896438-6896457 Msa0585810:intron 40.0%
GGTGTTCAGATTGATGTTGT+GGG - chr4_2:6896439-6896458 Msa0585810:intron 40.0%
TTTGTTGGTCAGCTAAAGGT+TGG - chr4_2:6896565-6896584 Msa0585810:intron 40.0%
GGTGCATTACAAGGTATGAT+CGG + chr4_2:6896661-6896680 None:intergenic 40.0%
!!! AGAGTTTTGAGCTATGCAGA+CGG + chr4_2:6896732-6896751 None:intergenic 40.0%
ATCTTGAGCACAAAATTGGC+CGG - chr4_2:6896857-6896876 Msa0585810:intron 40.0%
ATAACTAACTCTATCTCGCG+CGG + chr4_2:6896915-6896934 None:intergenic 40.0%
AGTACAAATCTTTCAGAGGG+AGG - chr4_2:6896998-6897017 Msa0585810:intron 40.0%
TTCGATGAGTTTGTCGAACT+AGG - chr4_2:6897253-6897272 Msa0585810:CDS 40.0%
GGTATCATCAAATGGAAGAC+TGG - chr4_2:6897274-6897293 Msa0585810:CDS 40.0%
AAGGAAGTTGAAGGAAGTTG+TGG - chr4_2:6897359-6897378 Msa0585810:intron 40.0%
ACCAAAGCAGGTGTAAAGAA+AGG - chr4_2:6897393-6897412 Msa0585810:intron 40.0%
TCCTTTCTTTACACCTGCTT+TGG + chr4_2:6897397-6897416 None:intergenic 40.0%
TGGGATACAATCAGACTCAA+AGG - chr4_2:6897434-6897453 Msa0585810:intron 40.0%
CTTGCTACCCCTTGAAATAT+GGG - chr4_2:6897488-6897507 Msa0585810:intron 40.0%
CTGAAATTGCTGATGCTGTA+AGG - chr4_2:6897511-6897530 Msa0585810:intron 40.0%
! GGTGGTGATGAAGATTATAG+AGG + chr4_2:6898101-6898120 None:intergenic 40.0%
ATTCCCTAACCGTGTTTGTA+TGG - chr4_2:6898327-6898346 Msa0585810:CDS 40.0%
CCAGCTAAACCATACAAACA+CGG + chr4_2:6898339-6898358 None:intergenic 40.0%
GCTCTTATTAATGACTCAGC+TGG - chr4_2:6898361-6898380 Msa0585810:CDS 40.0%
!! GCTTAATCAATGTGCCGTTT+AGG + chr4_2:6898478-6898497 None:intergenic 40.0%
TTGTGATATCATCCAAGACG+GGG - chr4_2:6898617-6898636 Msa0585810:CDS 40.0%
! CTTTTGCATAGCCTAAGAGA+GGG - chr4_2:6898704-6898723 Msa0585810:five_prime_UTR 40.0%
TTAAGTCGTTGTGCTAACTG+TGG - chr4_2:6898754-6898773 Msa0585810:five_prime_UTR 40.0%
! GGTTGGATAGGTTGAAGGAA+TGG + chr4_2:6896047-6896066 None:intergenic 45.0%
GGTCTTCTCCATCGTCAAAA+GGG + chr4_2:6896174-6896193 None:intergenic 45.0%
TTCAGACGGTAAACAAGACG+AGG - chr4_2:6896219-6896238 Msa0585810:CDS 45.0%
GTAAACAAGACGAGGATCCA+AGG - chr4_2:6896227-6896246 Msa0585810:CDS 45.0%
GGATTCTTGAAGTTTCCAGC+TGG - chr4_2:6896280-6896299 Msa0585810:intron 45.0%
!! AGGTGTTGTTGTGTGGTATC+TGG - chr4_2:6896355-6896374 Msa0585810:intron 45.0%
TGTTGTTGTGTGGTATCTGG+TGG - chr4_2:6896358-6896377 Msa0585810:intron 45.0%
!! ATGTTGTGGGTTCTGAGAGA+GGG - chr4_2:6896452-6896471 Msa0585810:intron 45.0%
! TTGGTCAGCTAAAGGTTGGT+TGG - chr4_2:6896569-6896588 Msa0585810:intron 45.0%
TAAAAACAATCCTGCTCCCG+CGG + chr4_2:6896957-6896976 None:intergenic 45.0%
! CATCAAATGGAAGACTGGCT+AGG - chr4_2:6897279-6897298 Msa0585810:CDS 45.0%
GAAGTTGAAGGAAGTTGTGG+AGG - chr4_2:6897362-6897381 Msa0585810:intron 45.0%
AAAGGCCACAATGCAGTCTA+GGG - chr4_2:6897452-6897471 Msa0585810:intron 45.0%
! GCTTGCTACCCCTTGAAATA+TGG - chr4_2:6897487-6897506 Msa0585810:intron 45.0%
ATAATCTTCATCACCACCCC+TGG - chr4_2:6898103-6898122 Msa0585810:CDS 45.0%
ATACTTGAGTACCTGTCCAG+GGG + chr4_2:6898122-6898141 None:intergenic 45.0%
GATACTTGAGTACCTGTCCA+GGG + chr4_2:6898123-6898142 None:intergenic 45.0%
AGATACTTGAGTACCTGTCC+AGG + chr4_2:6898124-6898143 None:intergenic 45.0%
CCGTGTTTGTATGGTTTAGC+TGG - chr4_2:6898336-6898355 Msa0585810:CDS 45.0%
ATTTGCGAGCTGAATTGCAG+CGG + chr4_2:6898404-6898423 None:intergenic 45.0%
CATTTCTTCTCTTCTGCCTG+CGG + chr4_2:6898595-6898614 None:intergenic 45.0%
! GCTTTTGCATAGCCTAAGAG+AGG - chr4_2:6898703-6898722 Msa0585810:five_prime_UTR 45.0%
TCGTCAAAAGGGTCTAGCCA+TGG + chr4_2:6896163-6896182 None:intergenic 50.0%
! TGGCTAGACCCTTTTGACGA+TGG - chr4_2:6896163-6896182 Msa0585810:intron 50.0%
GGGTCTTCTCCATCGTCAAA+AGG + chr4_2:6896175-6896194 None:intergenic 50.0%
!! GATGTTGTGGGTTCTGAGAG+AGG - chr4_2:6896451-6896470 Msa0585810:intron 50.0%
TCAGTATACTCAGCAGGCTC+AGG + chr4_2:6896544-6896563 None:intergenic 50.0%
!! GTCGGTATCGGTGCATTACA+AGG + chr4_2:6896670-6896689 None:intergenic 50.0%
ATCAGGACACGCCTAATCCA+AGG - chr4_2:6896701-6896720 Msa0585810:intron 50.0%
AGACGGACACTCCTTGGATT+AGG + chr4_2:6896715-6896734 None:intergenic 50.0%
AGCACAAAATTGGCCGGAGT+TGG - chr4_2:6896863-6896882 Msa0585810:intron 50.0%
ATATGCTGCATGGCCAACTC+CGG + chr4_2:6896879-6896898 None:intergenic 50.0%
TTACCCGAATGTGAATGCCG+CGG - chr4_2:6896937-6896956 Msa0585810:intron 50.0%
GACCGTTTCGAAACGTTCCA+CGG - chr4_2:6897304-6897323 Msa0585810:CDS 50.0%
TGCCGTGGAACGTTTCGAAA+CGG + chr4_2:6897309-6897328 None:intergenic 50.0%
GAGGAGAGATACACCAAAGC+AGG - chr4_2:6897381-6897400 Msa0585810:intron 50.0%
CAAAGGCCACAATGCAGTCT+AGG - chr4_2:6897451-6897470 Msa0585810:intron 50.0%
AAGGCCACAATGCAGTCTAG+GGG - chr4_2:6897453-6897472 Msa0585810:intron 50.0%
ATCACCCCTAGACTGCATTG+TGG + chr4_2:6897460-6897479 None:intergenic 50.0%
TCAAGGGGTAGCAAGCTATC+AGG + chr4_2:6897483-6897502 None:intergenic 50.0%
GAGCTGAATTGCAGCGGTAT+TGG + chr4_2:6898398-6898417 None:intergenic 50.0%
CAAATGCGCGCGAAAAACCT+AGG - chr4_2:6898419-6898438 Msa0585810:CDS 50.0%
! GGGAAACAAGTTTGTTCCGC+AGG - chr4_2:6898576-6898595 Msa0585810:CDS 50.0%
ATCGATCAACTTCCCCGTCT+TGG + chr4_2:6898632-6898651 None:intergenic 50.0%
TAAGAGAGGGAAGAGAGCGA+GGG - chr4_2:6898717-6898736 Msa0585810:five_prime_UTR 50.0%
TTTGGATTATCCGGCGGCCT+TGG + chr4_2:6896247-6896266 None:intergenic 55.0%
GGCTCAGGAAACTCATCGTC+CGG + chr4_2:6896529-6896548 None:intergenic 55.0%
! TGTCAGACACGCGTCGGTAT+CGG + chr4_2:6896682-6896701 None:intergenic 55.0%
TCCTGATGTCAGACACGCGT+CGG + chr4_2:6896688-6896707 None:intergenic 55.0%
CTATGCAGACGGACACTCCT+TGG + chr4_2:6896721-6896740 None:intergenic 55.0%
TACCCGAATGTGAATGCCGC+GGG - chr4_2:6896938-6896957 Msa0585810:intron 55.0%
GTTTCGAAACGTTCCACGGC+AGG - chr4_2:6897308-6897327 Msa0585810:CDS 55.0%
CTCGCTCTCTTCCCTCTCTT+AGG + chr4_2:6898718-6898737 None:intergenic 55.0%
CTAAGAGAGGGAAGAGAGCG+AGG - chr4_2:6898716-6898735 Msa0585810:five_prime_UTR 55.0%
ACCGACGCGTGTCTGACATC+AGG - chr4_2:6896684-6896703 Msa0585810:intron 60.0%
CTCCCGCGGCATTCACATTC+GGG + chr4_2:6896943-6896962 None:intergenic 60.0%
GCTCCCGCGGCATTCACATT+CGG + chr4_2:6896944-6896963 None:intergenic 60.0%
AATGTGAATGCCGCGGGAGC+AGG - chr4_2:6896944-6896963 Msa0585810:intron 60.0%
AGTGGTGGTACAACCTGCCG+TGG + chr4_2:6897324-6897343 None:intergenic 60.0%
CTTCATCACCACCCCTGGAC+AGG - chr4_2:6898108-6898127 Msa0585810:CDS 60.0%
CTTGAGTACCTGTCCAGGGG+TGG + chr4_2:6898119-6898138 None:intergenic 60.0%
AGGGAAGAGAGCGAGGGTTC+TGG - chr4_2:6898723-6898742 Msa0585810:five_prime_UTR 60.0%
AGACGAGGATCCAAGGCCGC+CGG - chr4_2:6896234-6896253 Msa0585810:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 6895601 6899003 6895601 ID=Msa0585810;Name=Msa0585810
chr4_2 mRNA 6895601 6899003 6895601 ID=Msa0585810-mRNA-1;Parent=Msa0585810;Name=Msa0585810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=367|1|1|1|0.8|0.83|6|289|473
chr4_2 exon 6895601 6896055 6895601 ID=Msa0585810-mRNA-1:exon:1738;Parent=Msa0585810-mRNA-1
chr4_2 exon 6896164 6896249 6896164 ID=Msa0585810-mRNA-1:exon:1737;Parent=Msa0585810-mRNA-1
chr4_2 exon 6896475 6896580 6896475 ID=Msa0585810-mRNA-1:exon:1736;Parent=Msa0585810-mRNA-1
chr4_2 exon 6897072 6897329 6897072 ID=Msa0585810-mRNA-1:exon:1735;Parent=Msa0585810-mRNA-1
chr4_2 exon 6897575 6897765 6897575 ID=Msa0585810-mRNA-1:exon:1734;Parent=Msa0585810-mRNA-1
chr4_2 exon 6898022 6899003 6898022 ID=Msa0585810-mRNA-1:exon:1733;Parent=Msa0585810-mRNA-1
chr4_2 five_prime_UTR 6898637 6899003 6898637 ID=Msa0585810-mRNA-1:five_prime_utr;Parent=Msa0585810-mRNA-1
chr4_2 CDS 6898022 6898636 6898022 ID=Msa0585810-mRNA-1:cds;Parent=Msa0585810-mRNA-1
chr4_2 CDS 6897575 6897765 6897575 ID=Msa0585810-mRNA-1:cds;Parent=Msa0585810-mRNA-1
chr4_2 CDS 6897072 6897329 6897072 ID=Msa0585810-mRNA-1:cds;Parent=Msa0585810-mRNA-1
chr4_2 CDS 6896475 6896580 6896475 ID=Msa0585810-mRNA-1:cds;Parent=Msa0585810-mRNA-1
chr4_2 CDS 6896164 6896249 6896164 ID=Msa0585810-mRNA-1:cds;Parent=Msa0585810-mRNA-1
chr4_2 CDS 6895890 6896055 6895890 ID=Msa0585810-mRNA-1:cds;Parent=Msa0585810-mRNA-1
chr4_2 three_prime_UTR 6895601 6895889 6895601 ID=Msa0585810-mRNA-1:three_prime_utr;Parent=Msa0585810-mRNA-1
Gene Sequence

>Msa0585810

ATGGCTGCAACTGCAACATATTATTTACATACCAAAATTTCAAAACCATTTTCACATTTCACTACAAACACATTTTCCATTCCTTCAACCTATCCAACCAATGTTTCATTGTTAACTTCATTAGACCATCCATCACATTGTTACAATTCAACTAGAAGACTAAATCTTCGCGTAAATGCCAAAAAGAACAATCCATGGCTAGACCCTTTTGACGATGGAGAAGACCCGAATATCGAATATGGTTCGTTGTTTTCAGACGGTAAACAAGACGAGGATCCAAGGCCGCCGGATAATCCAAACAACAATCCCTATGGATTCTTGAAGTTTCCAGCTGGTTATATGGTTGAGATAGCTCCTTTAGGATTGAAAGTTAGAGGTGATGTTAGAAGGTGTTGTTGTGTGGTATCTGGTGGTGTTTATGAGAATCTGTTGTTTTTTCCAATGATTCAGTTGATTAAGGATAGGTACCCTGGTGTTCAGATTGATGTTGTGGGTTCTGAGAGAGGGAAACAATGTTATGAGTTGAATAAGAATGTTAGATGGGCTAATGTTTTTGATCCGGACGATGAGTTTCCTGAGCCTGCTGAGTATACTGATTTTGTTGGTCAGCTAAAGAGTAGGTACTATGACATGATCTTGAGCACAAAATTGGCCGGAGTTGGCCATGCAGCATATTTATTCATGACAACCGCGCGAGATAGAGTTAGTTATGTTTACCCGAATGTGAATGCCGCGGGAGCAGGATTGTTTTTATCTGAAACATTCACGCCTGATAGTACAAATCTTTCAGAGGGAGGATATCATATGTATCATCAAATGGAAGACTGGCTAGGAAGACCGTTTCGAAACGTTCCACGGCAGGTTGTACCACCACTTAAAATATCACTTTCAAGGAAGTTGAAGGAAGTTGTGGAGGAGAGATACACCAAAGCAGGTGTAAAGAAAGGAAGATATATTGTGATTCATGGGATACAATCAGACTCAAAGGCCACAATGCAGTCTAGGGGTGATCCTGATAGCTTGCTACCCCTTGAAATATGGGCTGAAATTGCTGATGCTGTAAGGGAATTTACACCACTTTTTGTCATTCCACATGAGAAAGAAAGGGAAAATGTTGAGGAAATAGTTGGAGAAGATTCCTCTATAATCTTCATCACCACCCCTGGACAGCTGGCTGCTCTTATTAATGACTCAGCTGGAGTTATAGCAACCAATACCGCTGCAATTCAGCTCGCAAATGCGCGCGAAAAACCTAGTGTTGCACTATTTTGCTCTAAAGAGAAGGGAAACAAGTTTGTTCCGCAGGCAGAAGAGAAGAAATGCATTGTGATATCATCCAAGACGGGGAAGTTGATCGATATAGATGTTGAGGCTGTAAAAAGTGCAATTCAAACTTTCAATGTTTCTCTAGCTTTTGCATAG

Protein sequence

>Msa0585810

MAATATYYLHTKISKPFSHFTTNTFSIPSTYPTNVSLLTSLDHPSHCYNSTRRLNLRVNAKKNNPWLDPFDDGEDPNIEYGSLFSDGKQDEDPRPPDNPNNNPYGFLKFPAGYMVEIAPLGLKVRGDVRRCCCVVSGGVYENLLFFPMIQLIKDRYPGVQIDVVGSERGKQCYELNKNVRWANVFDPDDEFPEPAEYTDFVGQLKSRYYDMILSTKLAGVGHAAYLFMTTARDRVSYVYPNVNAAGAGLFLSETFTPDSTNLSEGGYHMYHQMEDWLGRPFRNVPRQVVPPLKISLSRKLKEVVEERYTKAGVKKGRYIVIHGIQSDSKATMQSRGDPDSLLPLEIWAEIADAVREFTPLFVIPHEKERENVEEIVGEDSSIIFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSVALFCSKEKGNKFVPQAEEKKCIVISSKTGKLIDIDVEAVKSAIQTFNVSLAFA*