AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1066830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066830 MtrunA17_Chr7g0247911 99.254 268 2 0 1 268 1 268 0.0 541
Msa1066830 MtrunA17_Chr7g0247901 79.104 268 56 0 1 268 1 268 1.06e-152 426
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066830 AT2G45990.2 75.373 268 66 0 1 268 1 268 4.09e-146 410
Msa1066830 AT2G45990.1 75.373 268 66 0 1 268 1 268 4.09e-146 410
Msa1066830 AT2G45990.3 73.134 268 67 1 1 268 1 263 1.30e-138 391
Msa1066830 AT2G45990.4 75.238 210 52 0 1 210 1 210 2.84e-111 320

Find 147 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGGGTAAAATGGGAATTT+AGG 0.231166 7_2:+60947932 Msa1066830:three_prime_UTR
GGTTGTTTGGATTAGTGAAT+TGG 0.275984 7_2:+60945841 Msa1066830:intron
GTTGTTTGGATTAGTGAATT+GGG 0.276815 7_2:+60945842 Msa1066830:intron
TTTCTTCACTAGCATTTAAA+TGG 0.285988 7_2:-60946251 Msa1066840:three_prime_UTR
AGTGTCAGCCCTTGGTGTTC+TGG 0.287833 7_2:-60945510 None:intergenic
GATGATCTGATAGACCTATT+TGG 0.294461 7_2:+60944859 Msa1066830:CDS
CAATCAAGCCTTGTTGCATT+TGG 0.295464 7_2:-60946217 Msa1066840:three_prime_UTR
GCTTAAAGTTGAGGGTATAT+TGG 0.314406 7_2:+60944783 Msa1066830:CDS
CAGTCTATATTATTAACTTT+TGG 0.315316 7_2:+60946096 Msa1066830:three_prime_UTR
TTTACTTGTGAGGTTGTTGC+TGG 0.317554 7_2:+60944547 Msa1066830:CDS
AGACGCATATGAGATTAAAA+TGG 0.319206 7_2:-60946508 Msa1066840:CDS
GCTGTTGGAGTAAGGTTTAC+AGG 0.326560 7_2:-60946954 Msa1066840:CDS
GTGCGACCGGTGGTGGAAAC+TGG 0.328384 7_2:+60944512 Msa1066830:CDS
CGCCACACCGGACCTGTTAT+CGG 0.329665 7_2:-60947748 Msa1066840:CDS
TTCATCTAGGGATGGATCTC+CGG 0.333105 7_2:+60946464 Msa1066830:three_prime_UTR
TCTACCTGGGAGAATTTGTT+TGG 0.335150 7_2:-60946174 Msa1066840:three_prime_UTR
GAATACAATCATGTTCAATA+TGG 0.335159 7_2:-60946922 Msa1066840:CDS
CTCTATGCATTGGACTTTGA+TGG 0.336958 7_2:+60944018 Msa1066830:CDS
AGAATATATGGTCTAGGAAC+TGG 0.346676 7_2:+60945362 Msa1066830:CDS
ACTTCATGCAATTATGCCTT+TGG 0.348730 7_2:+60948041 Msa1066830:three_prime_UTR
TAAACAGCTTTGTGGAAGAT+AGG 0.349869 7_2:+60945634 Msa1066830:intron
GTTCAATATGGACAGCATTA+AGG 0.353323 7_2:-60946910 Msa1066840:CDS
CATCTCTGACCTTTCCAAAT+AGG 0.357874 7_2:-60944873 None:intergenic
AAGAACGTGTGTCCATTTCA+TGG 0.366661 7_2:+60946986 Msa1066830:three_prime_UTR
CTACCTGGGAGAATTTGTTT+GGG 0.370951 7_2:-60946173 Msa1066840:three_prime_UTR
TTAATAATATAGACTGGAAA+TGG 0.373223 7_2:-60946089 Msa1066840:three_prime_UTR
GCTTCTGAATGAGTTCATCT+AGG 0.380340 7_2:+60946451 Msa1066830:three_prime_UTR
GAATTTCCATCAACTTCCTC+TGG 0.384520 7_2:+60946393 Msa1066830:three_prime_UTR
CTGGTTGGATTCAAGGAAAC+AGG 0.385624 7_2:+60944917 Msa1066830:CDS
TGCAATTATGCCTTTGGTTG+TGG 0.389999 7_2:+60948047 Msa1066830:three_prime_UTR
AAGAGCCAGAGTTGGATAAC+TGG 0.395774 7_2:+60945682 Msa1066830:CDS
TGGATTCATCCACAGAAGAT+TGG 0.401139 7_2:+60944266 Msa1066830:CDS
GACGCATATGAGATTAAAAT+GGG 0.401212 7_2:-60946507 Msa1066840:CDS
GATTTCGCTGGTTGGATTCA+AGG 0.403301 7_2:+60944910 Msa1066830:CDS
AAAACAGAATTATAGTTAAA+CGG 0.403540 7_2:-60946369 Msa1066840:exon
TTCTTCAGTGTTTCTACCTT+AGG 0.404727 7_2:-60945474 None:intergenic
AGCTTAACGAATCCGATAAC+AGG 0.407658 7_2:+60947736 Msa1066830:three_prime_UTR
ATGTCAGGTGCGACCGGTGG+TGG 0.413077 7_2:+60944505 Msa1066830:intron
GGTCCACATCACCGACGAAC+TGG 0.418590 7_2:-60947896 Msa1066840:CDS
TAGCTGAACTTGCCATGAAA+TGG 0.419180 7_2:-60946998 Msa1066840:CDS
TTCCATTCTTCCATGACAAT+GGG 0.419686 7_2:-60944826 None:intergenic
TTGAGATGGCCAGACTTGTT+TGG 0.420722 7_2:+60944238 Msa1066830:CDS
TTGGAAAGGTCAGAGATGAT+TGG 0.421615 7_2:+60944878 Msa1066830:CDS
TAATCTCATATGCGTCTGAT+TGG 0.422754 7_2:+60946514 Msa1066830:three_prime_UTR
TTAGGGAGATTAGAAGAAGA+AGG 0.432493 7_2:+60947950 Msa1066830:three_prime_UTR
GGATGATGATTGGAAGGAAT+GGG 0.434248 7_2:-60947851 Msa1066840:CDS
GATAACTGGAATTTGTATCT+AGG 0.438394 7_2:+60945696 Msa1066830:CDS
TGAAAGGAAGAGTAGGAAAT+GGG 0.438936 7_2:+60943991 Msa1066830:exon
GGATTCGTTAAGCTCCGATT+TGG 0.439915 7_2:-60947727 Msa1066840:CDS
ATACCACCAGAGAGAATATA+TGG 0.441088 7_2:+60945350 Msa1066830:CDS
GAACCGGAGCTGTTGGAGTA+AGG 0.443973 7_2:-60946962 Msa1066840:CDS
GAGGGTAAAATGGGAATTTA+GGG 0.444967 7_2:+60947933 Msa1066830:three_prime_UTR
GATCTTCGATTCATCCATCT+TGG 0.447981 7_2:+60947789 Msa1066830:three_prime_UTR
TTGTTTATGTATAAATAAGA+TGG 0.448122 7_2:-60946003 Msa1066840:three_prime_UTR
GAGATCAATAAGCTGAATCC+TGG 0.454047 7_2:-60945907 Msa1066840:three_prime_UTR
GCTTTACTTAGAGAACTTGC+TGG 0.454086 7_2:+60945320 Msa1066830:CDS
GTACATTGTCACCACAAAAC+AGG 0.454170 7_2:+60945163 Msa1066830:CDS
TCCACACTGCCAAACAAGTC+TGG 0.458820 7_2:-60944247 None:intergenic
AGGATGATGATTGGAAGGAA+TGG 0.465789 7_2:-60947852 Msa1066840:CDS
TTGTTTGGATTAGTGAATTG+GGG 0.466909 7_2:+60945843 Msa1066830:intron
CCTAGACCATATATTCTCTC+TGG 0.470653 7_2:-60945356 None:intergenic
TCCATCTTGGTTAAATCAGC+GGG 0.470952 7_2:+60947802 Msa1066830:three_prime_UTR
TTGAAAGGAAGAGTAGGAAA+TGG 0.477320 7_2:+60943990 Msa1066830:exon
TCAGTAGCAAGCTGAAATGA+TGG 0.478850 7_2:+60945937 Msa1066830:CDS
ACGATGAGGAGGATGATGAT+TGG 0.481020 7_2:-60947861 Msa1066840:CDS
TATGGACAGCATTAAGGACT+TGG 0.481375 7_2:-60946904 Msa1066840:CDS
TAGGGAGATTAGAAGAAGAA+GGG 0.482523 7_2:+60947951 Msa1066830:three_prime_UTR
GCTAGTCCAGAGGAAGTTGA+TGG 0.484655 7_2:-60946399 Msa1066840:CDS
TGGACACACGTTCTTAGAAC+CGG 0.492589 7_2:-60946978 Msa1066840:CDS
ATTCCATTCTTCCATGACAA+TGG 0.501028 7_2:-60944827 None:intergenic
TCATCTAGGGATGGATCTCC+GGG 0.510429 7_2:+60946465 Msa1066830:three_prime_UTR
TGGAGAACGATTTCGCTGGT+TGG 0.513694 7_2:+60944902 Msa1066830:CDS
TTGAGGGTATATTGGAGGAC+TGG 0.519493 7_2:+60944791 Msa1066830:CDS
TAAATCAGCGGGAGTGAAAG+AGG 0.519565 7_2:+60947813 Msa1066830:three_prime_UTR
CTTCTGAATGAGTTCATCTA+GGG 0.521992 7_2:+60946452 Msa1066830:three_prime_UTR
TGCTTTATCTCAACGTCTAG+AGG 0.522037 7_2:+60946334 Msa1066830:three_prime_UTR
GCCAGACTTGTTTGGCAGTG+TGG 0.523053 7_2:+60944246 Msa1066830:CDS
GAGTCCGGCGAACACCAAAT+CGG 0.524019 7_2:+60947713 Msa1066830:intron
GTTCTTAGAACCGGAGCTGT+TGG 0.528500 7_2:-60946969 Msa1066840:CDS
TCATATCCAGTTTCCACCAC+CGG 0.529897 7_2:-60944518 None:intergenic
TCCCGCTGATTTAACCAAGA+TGG 0.531039 7_2:-60947803 Msa1066840:CDS
TCTTAATGCATCAGCAACAC+CGG 0.532884 7_2:-60945123 None:intergenic
ATGAAGCAGCAGCCAACCCC+AGG 0.535732 7_2:+60945889 Msa1066830:CDS
TAAAGTTGAGGGTATATTGG+AGG 0.535863 7_2:+60944786 Msa1066830:CDS
AGCCCATTGTCATGGAAGAA+TGG 0.536844 7_2:+60944824 Msa1066830:CDS
ACTCACTGATGACTTTCTGA+TGG 0.538468 7_2:-60944585 None:intergenic
AATGGGGCATCTCTATGCAT+TGG 0.539644 7_2:+60944008 Msa1066830:exon
TTCTTCTGAAAGGTGGCAGA+GGG 0.540584 7_2:+60944760 Msa1066830:intron
TATGATATATTAAGATTGCA+TGG 0.541928 7_2:-60943946 None:intergenic
CAAATTGAAGCCCATTGTCA+TGG 0.542285 7_2:+60944816 Msa1066830:CDS
AGATCAATAAGCTGAATCCT+GGG 0.543296 7_2:-60945906 Msa1066840:three_prime_UTR
AGCTCCGATTTGGTGTTCGC+CGG 0.544891 7_2:-60947717 Msa1066840:CDS
AAAGGTCAGAGATGATTGGT+TGG 0.546720 7_2:+60944882 Msa1066830:CDS
TGAGGAGGATGATGATTGGA+AGG 0.548357 7_2:-60947857 Msa1066840:CDS
AAATTCCAGTTATCCAACTC+TGG 0.551915 7_2:-60945687 None:intergenic
AACGAATCCGATAACAGGTC+CGG 0.554193 7_2:+60947741 Msa1066830:three_prime_UTR
GGCAGAGGGGCTTAAAGTTG+AGG 0.554476 7_2:+60944774 Msa1066830:CDS
TGCAGGCTGCTAAGTTGAGA+TGG 0.554505 7_2:+60944224 Msa1066830:intron
GTAACATTGAAAGGAAGAGT+AGG 0.555358 7_2:+60943984 Msa1066830:five_prime_UTR
TACCCTCGCCGGAAAACGCA+AGG 0.556070 7_2:-60947917 Msa1066840:CDS
AAACCTTACTCCAACAGCTC+CGG 0.559785 7_2:+60946959 Msa1066830:three_prime_UTR
TTCATGTCAGGTGCGACCGG+TGG 0.564118 7_2:+60944502 Msa1066830:intron
CGTCCAGTTCGTCGGTGATG+TGG 0.565416 7_2:+60947893 Msa1066830:three_prime_UTR
ACTGATGACTTTCTGATGGA+AGG 0.565784 7_2:-60944581 None:intergenic
TTCCCCAAACAAATTCTCCC+AGG 0.568712 7_2:+60946170 Msa1066830:three_prime_UTR
TTAACTGTAGTGTCAGCCCT+TGG 0.569163 7_2:-60945518 None:intergenic
CAAAAGTTAATAATATAGAC+TGG 0.569675 7_2:-60946095 Msa1066840:three_prime_UTR
CAGCATTAAGGACTTGGAAG+AGG 0.572902 7_2:-60946898 Msa1066840:intron
GACAGCTATCTCAGCTCTCA+AGG 0.573429 7_2:+60944065 Msa1066830:CDS
GCAGAGGGGCTTAAAGTTGA+GGG 0.574411 7_2:+60944775 Msa1066830:CDS
TACCTGGGAGAATTTGTTTG+GGG 0.574780 7_2:-60946172 Msa1066840:three_prime_UTR
TTCAACAATCCAATCTTCTG+TGG 0.576144 7_2:-60944275 None:intergenic
CCAGAGAGAATATATGGTCT+AGG 0.578822 7_2:+60945356 Msa1066830:CDS
GAATATATGGTCTAGGAACT+GGG 0.583865 7_2:+60945363 Msa1066830:CDS
TGTCATCAAAGAGCCAGAGT+TGG 0.584073 7_2:+60945674 Msa1066830:CDS
TACTCTTGCCAAATGCAACA+AGG 0.584301 7_2:+60946209 Msa1066830:three_prime_UTR
TAAGAGAATACACTTCTACC+TGG 0.584708 7_2:-60946188 Msa1066840:three_prime_UTR
ATCCATCTTGGTTAAATCAG+CGG 0.590655 7_2:+60947801 Msa1066830:three_prime_UTR
TGTAATAATAGAAATTCTCA+AGG 0.593072 7_2:-60946034 Msa1066840:three_prime_UTR
GTTCTTCTGAAAGGTGGCAG+AGG 0.593902 7_2:+60944759 Msa1066830:intron
AATAAGCTGAATCCTGGGGT+TGG 0.595384 7_2:-60945901 Msa1066840:three_prime_UTR
AAGAGAATACACTTCTACCT+GGG 0.598107 7_2:-60946187 Msa1066840:three_prime_UTR
GATGATGATTGGAAGGAATG+GGG 0.598286 7_2:-60947850 Msa1066840:CDS
CTTAATGCATCAGCAACACC+GGG 0.599753 7_2:-60945122 None:intergenic
AAGTTCTCTAAGTAAAGCAT+CGG 0.602912 7_2:-60945315 None:intergenic
TGTTTGGATTAGTGAATTGG+GGG 0.603046 7_2:+60945844 Msa1066830:intron
TGAATGAGTTCATCTAGGGA+TGG 0.611085 7_2:+60946456 Msa1066830:three_prime_UTR
CAAAGACACGCCACAACCAA+AGG 0.612425 7_2:-60948057 None:intergenic
CGCATATGAGATTAAAATGG+GGG 0.612833 7_2:-60946505 Msa1066840:CDS
TGGTTGGAGAACGATTTCGC+TGG 0.613350 7_2:+60944898 Msa1066830:CDS
AGCAGATAATGCTAGTCCAG+AGG 0.613968 7_2:-60946409 Msa1066840:CDS
TCTGATAGACCTATTTGGAA+AGG 0.618657 7_2:+60944864 Msa1066830:CDS
TTTACCTCTAGATTCTATCC+CGG 0.630404 7_2:+60945104 Msa1066830:intron
GGACGACGTGTTCGACGATG+AGG 0.631613 7_2:-60947875 Msa1066840:CDS
AGACCATATATTCTCTCTGG+TGG 0.638617 7_2:-60945353 None:intergenic
CGACGTGTTCGACGATGAGG+AGG 0.640320 7_2:-60947872 Msa1066840:CDS
AAATCAGCGGGAGTGAAAGA+GGG 0.642642 7_2:+60947814 Msa1066830:three_prime_UTR
GAACACGTCGTCCAGTTCGT+CGG 0.646781 7_2:+60947885 Msa1066830:three_prime_UTR
GCGGGAGTGAAAGAGGGTGA+AGG 0.647627 7_2:+60947820 Msa1066830:three_prime_UTR
GAGATGATGAAACGCCACAC+CGG 0.658134 7_2:-60947760 Msa1066840:CDS
ATCCGATAACAGGTCCGGTG+TGG 0.660427 7_2:+60947746 Msa1066830:three_prime_UTR
GATCAATAAGCTGAATCCTG+GGG 0.681696 7_2:-60945905 Msa1066840:three_prime_UTR
GGATGAATCGAAGATCAAAG+AGG 0.685829 7_2:-60947782 Msa1066840:CDS
GGAGTTCTCTGTGATACATG+TGG 0.686150 7_2:+60944039 Msa1066830:CDS
GAAAGGAAGAGTAGGAAATG+GGG 0.694887 7_2:+60943992 Msa1066830:exon
ACGCATATGAGATTAAAATG+GGG 0.696898 7_2:-60946506 Msa1066840:CDS
TCTTCTGAAAGGTGGCAGAG+GGG 0.709844 7_2:+60944761 Msa1066830:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATATCATATTTTGAT+TGG + chr7_2:60943956-60943975 Msa1066830:five_prime_UTR 10.0%
!! TAATTAATAATTGTTAAACT+TGG + chr7_2:60945820-60945839 Msa1066830:intron 10.0%
!! AACTTAAATTAAGAAAAAAA+AGG + chr7_2:60947612-60947631 Msa1066830:intron 10.0%
!!! GTTGTCAAATAATTAATTTT+TGG + chr7_2:60945077-60945096 Msa1066830:intron 15.0%
!!! AGTATTGCTATTTTTTTATT+TGG + chr7_2:60945388-60945407 Msa1066830:intron 15.0%
!! TTGTTTATGTATAAATAAGA+TGG - chr7_2:60946006-60946025 Msa1066840:three_prime_UTR 15.0%
!!! AATTGTATCACTTTTTTAAA+CGG - chr7_2:60946315-60946334 Msa1066840:three_prime_UTR 15.0%
!! AAAACAGAATTATAGTTAAA+CGG - chr7_2:60946372-60946391 Msa1066840:exon 15.0%
!! TCGAAAAAAAAATGTAAAAA+TGG + chr7_2:60946863-60946882 Msa1066830:intron 15.0%
!! TATGATATATTAAGATTGCA+TGG - chr7_2:60943949-60943968 None:intergenic 20.0%
!!! TATCATATTTTGATTGGTTT+TGG + chr7_2:60943962-60943981 Msa1066830:five_prime_UTR 20.0%
!! GTATAAAACTATAAACCATA+TGG + chr7_2:60944606-60944625 Msa1066830:intron 20.0%
!!! TTGCTTTTGATTTTTTATCA+TGG + chr7_2:60944653-60944672 Msa1066830:intron 20.0%
!! ATTAATTATTTGACAACACT+TGG - chr7_2:60945074-60945093 None:intergenic 20.0%
!! TATTACATGTTAAGATGATT+TGG + chr7_2:60945588-60945607 Msa1066830:intron 20.0%
!! ATTACATGTTAAGATGATTT+GGG + chr7_2:60945589-60945608 Msa1066830:intron 20.0%
!! TGTAATAATAGAAATTCTCA+AGG - chr7_2:60946037-60946056 Msa1066840:three_prime_UTR 20.0%
!! TTAATAATATAGACTGGAAA+TGG - chr7_2:60946092-60946111 Msa1066840:three_prime_UTR 20.0%
!! CAAAAGTTAATAATATAGAC+TGG - chr7_2:60946098-60946117 Msa1066840:three_prime_UTR 20.0%
!!! CAGTCTATATTATTAACTTT+TGG + chr7_2:60946096-60946115 Msa1066830:three_prime_UTR 20.0%
!! ATCGTAAAAATAATAACAGT+AGG + chr7_2:60946283-60946302 Msa1066830:three_prime_UTR 20.0%
!!! TGATTTATGATAAGACATTT+TGG - chr7_2:60946803-60946822 Msa1066840:intron 20.0%
!!! AATTTTTCGTGTTTGATTTT+AGG - chr7_2:60947030-60947049 Msa1066840:intron 20.0%
!! TACTTCATTTAATCTTTCAA+CGG + chr7_2:60947150-60947169 Msa1066830:intron 20.0%
!!! ATACTCTTTTTAGTACTTAT+TGG - chr7_2:60947257-60947276 Msa1066840:intron 20.0%
!! ATAACAAGATAAAAACTATG+AGG + chr7_2:60947317-60947336 Msa1066830:intron 20.0%
!! ATAACAAAAAACTCAGTAAA+AGG + chr7_2:60947413-60947432 Msa1066830:intron 20.0%
!! TAACAAAAAACTCAGTAAAA+GGG + chr7_2:60947414-60947433 Msa1066830:intron 20.0%
!!! TTTTACTTGTTATGAATGAT+GGG - chr7_2:60947581-60947600 Msa1066840:intron 20.0%
!!! TTTTTACTTGTTATGAATGA+TGG - chr7_2:60947582-60947601 Msa1066840:intron 20.0%
!!! TGATTATTACTATTTTTTGC+TGG - chr7_2:60947659-60947678 Msa1066840:intron 20.0%
!!! GTTGTTTTCTTGCATTTTAT+TGG - chr7_2:60944105-60944124 None:intergenic 25.0%
!!! TATGGTTTTGGACATTTTTT+TGG + chr7_2:60944166-60944185 Msa1066830:intron 25.0%
!! TATATTGTTTGATGATTTGC+AGG + chr7_2:60944207-60944226 Msa1066830:intron 25.0%
! AACACAGTTAAACTCTAATT+TGG - chr7_2:60944394-60944413 None:intergenic 25.0%
! AAATTAGAGTTTAACTGTGT+TGG + chr7_2:60944393-60944412 Msa1066830:intron 25.0%
!!! AACTTAAGTTTTTTCATGTC+AGG + chr7_2:60944490-60944509 Msa1066830:intron 25.0%
!! CCAAAAAATTTAAAGCCATA+TGG - chr7_2:60944624-60944643 None:intergenic 25.0%
!!! CCATATGGCTTTAAATTTTT+TGG + chr7_2:60944621-60944640 Msa1066830:intron 25.0%
! AACATTATCATCAGATTCTA+AGG + chr7_2:60944695-60944714 Msa1066830:intron 25.0%
!! CAATATATGTAGGACTTTTA+GGG - chr7_2:60945227-60945246 None:intergenic 25.0%
!! TCAATATATGTAGGACTTTT+AGG - chr7_2:60945228-60945247 None:intergenic 25.0%
! AAAGTGCATAGAAAATTCAA+AGG - chr7_2:60945263-60945282 None:intergenic 25.0%
!! GTTAATTTTAAACAGCTTTG+TGG + chr7_2:60945626-60945645 Msa1066830:intron 25.0%
!!! CTCTTTGATGACATTTTTAA+GGG - chr7_2:60945667-60945686 None:intergenic 25.0%
! TTTGCACTATTTGTGATTAT+TGG + chr7_2:60945787-60945806 Msa1066830:intron 25.0%
! AATTGTTAAACTTGGTTGTT+TGG + chr7_2:60945828-60945847 Msa1066830:intron 25.0%
! TTTCTTCACTAGCATTTAAA+TGG - chr7_2:60946254-60946273 Msa1066840:three_prime_UTR 25.0%
! TTTATATTATGTTCTTCACC+TGG - chr7_2:60946722-60946741 Msa1066840:intron 25.0%
! ATCAAAATCTTTCACAAACT+AGG + chr7_2:60946745-60946764 Msa1066830:intron 25.0%
! GAATACAATCATGTTCAATA+TGG - chr7_2:60946925-60946944 Msa1066840:CDS 25.0%
! AGATTAAATGAAGTAACAAG+AGG - chr7_2:60947145-60947164 Msa1066840:intron 25.0%
! ACTTCATTTAATCTTTCAAC+GGG + chr7_2:60947151-60947170 Msa1066830:intron 25.0%
! AAAGTTGAATTTATCCACTT+TGG + chr7_2:60947341-60947360 Msa1066830:intron 25.0%
! AAGTTGAATTTATCCACTTT+GGG + chr7_2:60947342-60947361 Msa1066830:intron 25.0%
! GTTTATGCTAATTTCCAAAT+TGG - chr7_2:60947377-60947396 Msa1066840:intron 25.0%
! ATAAAAAAACTAGCTCCAAT+TGG - chr7_2:60947457-60947476 Msa1066840:intron 25.0%
! TCAACTCAAATTACAAAATG+TGG + chr7_2:60947684-60947703 Msa1066830:intron 25.0%
! AAATTACAAAATGTGGTTAC+CGG + chr7_2:60947691-60947710 Msa1066830:intron 25.0%
!!! TTGGTTTTGGTAACATTGAA+AGG + chr7_2:60943975-60943994 Msa1066830:five_prime_UTR 30.0%
TGATCACATTCAGTTTCATA+TGG + chr7_2:60944148-60944167 Msa1066830:intron 30.0%
! CATTCAGTTTCATATGGTTT+TGG + chr7_2:60944154-60944173 Msa1066830:intron 30.0%
! ATGAAACTCTTTTACTTGTG+AGG + chr7_2:60944537-60944556 Msa1066830:CDS 30.0%
! TAGAAAATTCAAAGGCACAA+GGG - chr7_2:60945255-60945274 None:intergenic 30.0%
! ATAGAAAATTCAAAGGCACA+AGG - chr7_2:60945256-60945275 None:intergenic 30.0%
AAGTTCTCTAAGTAAAGCAT+CGG - chr7_2:60945318-60945337 None:intergenic 30.0%
CAAAAAAGACAAGATGGTTT+GGG - chr7_2:60945446-60945465 None:intergenic 30.0%
TGAAACCAAAAAAGACAAGA+TGG - chr7_2:60945452-60945471 None:intergenic 30.0%
! TAAGATTCTTTTGCATCTAG+AGG + chr7_2:60945538-60945557 Msa1066830:intron 30.0%
!! GCTCTTTGATGACATTTTTA+AGG - chr7_2:60945668-60945687 None:intergenic 30.0%
GATAACTGGAATTTGTATCT+AGG + chr7_2:60945696-60945715 Msa1066830:CDS 30.0%
!! GTTGTTTGGATTAGTGAATT+GGG + chr7_2:60945842-60945861 Msa1066830:intron 30.0%
!! TTGTTTGGATTAGTGAATTG+GGG + chr7_2:60945843-60945862 Msa1066830:intron 30.0%
! AACTTTTGGCAATGATAATC+TGG + chr7_2:60946110-60946129 Msa1066830:three_prime_UTR 30.0%
ACGCATATGAGATTAAAATG+GGG - chr7_2:60946509-60946528 Msa1066840:CDS 30.0%
GACGCATATGAGATTAAAAT+GGG - chr7_2:60946510-60946529 Msa1066840:CDS 30.0%
AGACGCATATGAGATTAAAA+TGG - chr7_2:60946511-60946530 Msa1066840:CDS 30.0%
ACAAAATTACTACTTCCTCT+AGG + chr7_2:60946617-60946636 Msa1066830:intron 30.0%
TATCTTTATATTCAGCCTAG+AGG - chr7_2:60946635-60946654 Msa1066840:intron 30.0%
CGATCATAAAGAACTAAGAA+TGG - chr7_2:60946846-60946865 Msa1066840:intron 30.0%
TCAAACACGAAAAATTGCAA+TGG + chr7_2:60947034-60947053 Msa1066830:intron 30.0%
!!! TACTGTTTTTTGAAGTAGAG+AGG - chr7_2:60947084-60947103 Msa1066840:intron 30.0%
GTAACATTGAAAGGAAGAGT+AGG + chr7_2:60943984-60944003 Msa1066830:five_prime_UTR 35.0%
TTGAAAGGAAGAGTAGGAAA+TGG + chr7_2:60943990-60944009 Msa1066830:exon 35.0%
TGAAAGGAAGAGTAGGAAAT+GGG + chr7_2:60943991-60944010 Msa1066830:exon 35.0%
! TTGCATTTTATTGGTGAGAG+AGG - chr7_2:60944096-60944115 None:intergenic 35.0%
TTCAACAATCCAATCTTCTG+TGG - chr7_2:60944278-60944297 None:intergenic 35.0%
!! ACAATCTTGAATTTGCTAGC+AGG + chr7_2:60944442-60944461 Msa1066830:intron 35.0%
GAACTATGTCATCAGTCAAA+TGG - chr7_2:60944743-60944762 None:intergenic 35.0%
GATGACATAGTTCTTCTGAA+AGG + chr7_2:60944750-60944769 Msa1066830:intron 35.0%
! GCTTAAAGTTGAGGGTATAT+TGG + chr7_2:60944783-60944802 Msa1066830:CDS 35.0%
! TAAAGTTGAGGGTATATTGG+AGG + chr7_2:60944786-60944805 Msa1066830:CDS 35.0%
TTCCATTCTTCCATGACAAT+GGG - chr7_2:60944829-60944848 None:intergenic 35.0%
ATTCCATTCTTCCATGACAA+TGG - chr7_2:60944830-60944849 None:intergenic 35.0%
GATGATCTGATAGACCTATT+TGG + chr7_2:60944859-60944878 Msa1066830:CDS 35.0%
TCTGATAGACCTATTTGGAA+AGG + chr7_2:60944864-60944883 Msa1066830:CDS 35.0%
TGGTACTAAATCACATGTTG+CGG - chr7_2:60945054-60945073 None:intergenic 35.0%
TTTACCTCTAGATTCTATCC+CGG + chr7_2:60945104-60945123 Msa1066830:intron 35.0%
! AAGGGCATGTCAATATATGT+AGG - chr7_2:60945237-60945256 None:intergenic 35.0%
CTATCCTTTCTATGGTTTCA+GGG + chr7_2:60945284-60945303 Msa1066830:intron 35.0%
ATACCACCAGAGAGAATATA+TGG + chr7_2:60945350-60945369 Msa1066830:CDS 35.0%
AGAATATATGGTCTAGGAAC+TGG + chr7_2:60945362-60945381 Msa1066830:CDS 35.0%
GAATATATGGTCTAGGAACT+GGG + chr7_2:60945363-60945382 Msa1066830:CDS 35.0%
CCAAAAAAGACAAGATGGTT+TGG - chr7_2:60945447-60945466 None:intergenic 35.0%
!!! CCAAACCATCTTGTCTTTTT+TGG + chr7_2:60945444-60945463 Msa1066830:intron 35.0%
!!! CTTTTTTGGTTTCAGTCCTA+AGG + chr7_2:60945458-60945477 Msa1066830:intron 35.0%
! TTCTTCAGTGTTTCTACCTT+AGG - chr7_2:60945477-60945496 None:intergenic 35.0%
AAAAAATGCCAGAACACCAA+GGG + chr7_2:60945502-60945521 Msa1066830:CDS 35.0%
! ACATGTTAAGATGATTTGGG+AGG + chr7_2:60945592-60945611 Msa1066830:intron 35.0%
! TAAACAGCTTTGTGGAAGAT+AGG + chr7_2:60945634-60945653 Msa1066830:intron 35.0%
AAATTCCAGTTATCCAACTC+TGG - chr7_2:60945690-60945709 None:intergenic 35.0%
!! GGTTGTTTGGATTAGTGAAT+TGG + chr7_2:60945841-60945860 Msa1066830:intron 35.0%
!! TGTTTGGATTAGTGAATTGG+GGG + chr7_2:60945844-60945863 Msa1066830:intron 35.0%
AGATCAATAAGCTGAATCCT+GGG - chr7_2:60945909-60945928 Msa1066840:three_prime_UTR 35.0%
AAGAGAATACACTTCTACCT+GGG - chr7_2:60946190-60946209 Msa1066840:three_prime_UTR 35.0%
TAAGAGAATACACTTCTACC+TGG - chr7_2:60946191-60946210 Msa1066840:three_prime_UTR 35.0%
CTTCTGAATGAGTTCATCTA+GGG + chr7_2:60946452-60946471 Msa1066830:three_prime_UTR 35.0%
CGCATATGAGATTAAAATGG+GGG - chr7_2:60946508-60946527 Msa1066840:CDS 35.0%
TAATCTCATATGCGTCTGAT+TGG + chr7_2:60946514-60946533 Msa1066830:three_prime_UTR 35.0%
CTTATCATGTCAACAGTTGA+AGG - chr7_2:60946553-60946572 Msa1066840:intron 35.0%
ACAGCAAGCAACATAAACTA+AGG + chr7_2:60946590-60946609 Msa1066830:intron 35.0%
ATGATGTTGGATTCTGATCA+AGG - chr7_2:60946692-60946711 Msa1066840:intron 35.0%
AATCTTTCACAAACTAGGTG+AGG + chr7_2:60946750-60946769 Msa1066830:intron 35.0%
GTTCAATATGGACAGCATTA+AGG - chr7_2:60946913-60946932 Msa1066840:CDS 35.0%
!!! TCGTGTTTGATTTTAGGACA+AGG - chr7_2:60947024-60947043 Msa1066840:intron 35.0%
!! TTTTGACATGTGCTTGTTGA+TGG - chr7_2:60947113-60947132 Msa1066840:intron 35.0%
GCTGTCAAAGAAAAAGTCTA+GGG - chr7_2:60947280-60947299 Msa1066840:intron 35.0%
TGCTGTCAAAGAAAAAGTCT+AGG - chr7_2:60947281-60947300 Msa1066840:intron 35.0%
! CTTTTTCTTTGACAGCACAT+TGG + chr7_2:60947284-60947303 Msa1066830:intron 35.0%
ATCCATCTTGGTTAAATCAG+CGG + chr7_2:60947801-60947820 Msa1066830:three_prime_UTR 35.0%
GAGGGTAAAATGGGAATTTA+GGG + chr7_2:60947933-60947952 Msa1066830:three_prime_UTR 35.0%
TTAGGGAGATTAGAAGAAGA+AGG + chr7_2:60947950-60947969 Msa1066830:three_prime_UTR 35.0%
TAGGGAGATTAGAAGAAGAA+GGG + chr7_2:60947951-60947970 Msa1066830:three_prime_UTR 35.0%
ACTTCATGCAATTATGCCTT+TGG + chr7_2:60948041-60948060 Msa1066830:three_prime_UTR 35.0%
GAAAGGAAGAGTAGGAAATG+GGG + chr7_2:60943992-60944011 Msa1066830:exon 40.0%
CTCTATGCATTGGACTTTGA+TGG + chr7_2:60944018-60944037 Msa1066830:CDS 40.0%
TGGATTCATCCACAGAAGAT+TGG + chr7_2:60944266-60944285 Msa1066830:CDS 40.0%
TTTACTTGTGAGGTTGTTGC+TGG + chr7_2:60944547-60944566 Msa1066830:CDS 40.0%
ACTGATGACTTTCTGATGGA+AGG - chr7_2:60944584-60944603 None:intergenic 40.0%
ACTCACTGATGACTTTCTGA+TGG - chr7_2:60944588-60944607 None:intergenic 40.0%
! GACATAGTTCTTCTGAAAGG+TGG + chr7_2:60944753-60944772 Msa1066830:intron 40.0%
CAAATTGAAGCCCATTGTCA+TGG + chr7_2:60944816-60944835 Msa1066830:CDS 40.0%
CATCTCTGACCTTTCCAAAT+AGG - chr7_2:60944876-60944895 None:intergenic 40.0%
TTGGAAAGGTCAGAGATGAT+TGG + chr7_2:60944878-60944897 Msa1066830:CDS 40.0%
AAAGGTCAGAGATGATTGGT+TGG + chr7_2:60944882-60944901 Msa1066830:CDS 40.0%
CACATGTTGCGGAACAATAA+TGG - chr7_2:60945043-60945062 None:intergenic 40.0%
TCTTAATGCATCAGCAACAC+CGG - chr7_2:60945126-60945145 None:intergenic 40.0%
GTACATTGTCACCACAAAAC+AGG + chr7_2:60945163-60945182 Msa1066830:CDS 40.0%
AGGGTTATTGTCTTCATGCT+AGG - chr7_2:60945208-60945227 None:intergenic 40.0%
GCACTTTCCTATCCTTTCTA+TGG + chr7_2:60945276-60945295 Msa1066830:intron 40.0%
CCTGAAACCATAGAAAGGAT+AGG - chr7_2:60945286-60945305 None:intergenic 40.0%
CCTATCCTTTCTATGGTTTC+AGG + chr7_2:60945283-60945302 Msa1066830:intron 40.0%
GCTTTACTTAGAGAACTTGC+TGG + chr7_2:60945320-60945339 Msa1066830:CDS 40.0%
AGACCATATATTCTCTCTGG+TGG - chr7_2:60945356-60945375 None:intergenic 40.0%
CCTAGACCATATATTCTCTC+TGG - chr7_2:60945359-60945378 None:intergenic 40.0%
CCAGAGAGAATATATGGTCT+AGG + chr7_2:60945356-60945375 Msa1066830:CDS 40.0%
! TGGGAAATAGCAAAGGCATA+AGG - chr7_2:60945427-60945446 None:intergenic 40.0%
! GATGGTTTGGGAAATAGCAA+AGG - chr7_2:60945434-60945453 None:intergenic 40.0%
CAAAAAATGCCAGAACACCA+AGG + chr7_2:60945501-60945520 Msa1066830:CDS 40.0%
GTTCAACACCCAAAAAGAGA+GGG + chr7_2:60945866-60945885 Msa1066830:CDS 40.0%
! TGCTTCATCCCTCTCTTTTT+GGG - chr7_2:60945877-60945896 Msa1066840:three_prime_UTR 40.0%
GATCAATAAGCTGAATCCTG+GGG - chr7_2:60945908-60945927 Msa1066840:three_prime_UTR 40.0%
GAGATCAATAAGCTGAATCC+TGG - chr7_2:60945910-60945929 Msa1066840:three_prime_UTR 40.0%
TCAGTAGCAAGCTGAAATGA+TGG + chr7_2:60945937-60945956 Msa1066830:CDS 40.0%
! TACCTGGGAGAATTTGTTTG+GGG - chr7_2:60946175-60946194 Msa1066840:three_prime_UTR 40.0%
! CTACCTGGGAGAATTTGTTT+GGG - chr7_2:60946176-60946195 Msa1066840:three_prime_UTR 40.0%
! TCTACCTGGGAGAATTTGTT+TGG - chr7_2:60946177-60946196 Msa1066840:three_prime_UTR 40.0%
TACTCTTGCCAAATGCAACA+AGG + chr7_2:60946209-60946228 Msa1066830:three_prime_UTR 40.0%
!! CAATCAAGCCTTGTTGCATT+TGG - chr7_2:60946220-60946239 Msa1066840:three_prime_UTR 40.0%
TGCTTTATCTCAACGTCTAG+AGG + chr7_2:60946334-60946353 Msa1066830:three_prime_UTR 40.0%
GAATTTCCATCAACTTCCTC+TGG + chr7_2:60946393-60946412 Msa1066830:three_prime_UTR 40.0%
GCTTCTGAATGAGTTCATCT+AGG + chr7_2:60946451-60946470 Msa1066830:three_prime_UTR 40.0%
TGAATGAGTTCATCTAGGGA+TGG + chr7_2:60946456-60946475 Msa1066830:three_prime_UTR 40.0%
TATGGACAGCATTAAGGACT+TGG - chr7_2:60946907-60946926 Msa1066840:CDS 40.0%
AAGAACGTGTGTCCATTTCA+TGG + chr7_2:60946986-60947005 Msa1066830:three_prime_UTR 40.0%
TAGCTGAACTTGCCATGAAA+TGG - chr7_2:60947001-60947020 Msa1066840:CDS 40.0%
!! TGAAGTAACAAGAGGTGCTT+AGG - chr7_2:60947137-60947156 Msa1066840:intron 40.0%
AAACCACAGCTTCAACCAAT+TGG + chr7_2:60947439-60947458 Msa1066830:intron 40.0%
AGCTTAACGAATCCGATAAC+AGG + chr7_2:60947736-60947755 Msa1066830:three_prime_UTR 40.0%
GGATGAATCGAAGATCAAAG+AGG - chr7_2:60947785-60947804 Msa1066840:CDS 40.0%
GATCTTCGATTCATCCATCT+TGG + chr7_2:60947789-60947808 Msa1066830:three_prime_UTR 40.0%
TCCATCTTGGTTAAATCAGC+GGG + chr7_2:60947802-60947821 Msa1066830:three_prime_UTR 40.0%
GATGATGATTGGAAGGAATG+GGG - chr7_2:60947853-60947872 Msa1066840:CDS 40.0%
GGATGATGATTGGAAGGAAT+GGG - chr7_2:60947854-60947873 Msa1066840:CDS 40.0%
AGGATGATGATTGGAAGGAA+TGG - chr7_2:60947855-60947874 Msa1066840:CDS 40.0%
CGAGGGTAAAATGGGAATTT+AGG + chr7_2:60947932-60947951 Msa1066830:three_prime_UTR 40.0%
TGCAATTATGCCTTTGGTTG+TGG + chr7_2:60948047-60948066 Msa1066830:three_prime_UTR 40.0%
! AATGGGGCATCTCTATGCAT+TGG + chr7_2:60944008-60944027 Msa1066830:exon 45.0%
GGAGTTCTCTGTGATACATG+TGG + chr7_2:60944039-60944058 Msa1066830:CDS 45.0%
! TTGAGATGGCCAGACTTGTT+TGG + chr7_2:60944238-60944257 Msa1066830:CDS 45.0%
TTCACCTCTAGCATAGTGCT+TGG - chr7_2:60944422-60944441 None:intergenic 45.0%
! TTTTTCATGTCAGGTGCGAC+CGG + chr7_2:60944499-60944518 Msa1066830:intron 45.0%
TCATATCCAGTTTCCACCAC+CGG - chr7_2:60944521-60944540 None:intergenic 45.0%
! TTCTTCTGAAAGGTGGCAGA+GGG + chr7_2:60944760-60944779 Msa1066830:intron 45.0%
! TTGAGGGTATATTGGAGGAC+TGG + chr7_2:60944791-60944810 Msa1066830:CDS 45.0%
AGCCCATTGTCATGGAAGAA+TGG + chr7_2:60944824-60944843 Msa1066830:CDS 45.0%
! GATTTCGCTGGTTGGATTCA+AGG + chr7_2:60944910-60944929 Msa1066830:CDS 45.0%
CTGGTTGGATTCAAGGAAAC+AGG + chr7_2:60944917-60944936 Msa1066830:CDS 45.0%
TCTACTGCGTTGTAACGCTA+TGG - chr7_2:60945009-60945028 None:intergenic 45.0%
AACACCGGGATAGAATCTAG+AGG - chr7_2:60945111-60945130 None:intergenic 45.0%
CTTAATGCATCAGCAACACC+GGG - chr7_2:60945125-60945144 None:intergenic 45.0%
! GAGAAGTCAGACCTGTTTTG+TGG - chr7_2:60945177-60945196 None:intergenic 45.0%
TTAACTGTAGTGTCAGCCCT+TGG - chr7_2:60945521-60945540 None:intergenic 45.0%
TGTCATCAAAGAGCCAGAGT+TGG + chr7_2:60945674-60945693 Msa1066830:CDS 45.0%
AAGAGCCAGAGTTGGATAAC+TGG + chr7_2:60945682-60945701 Msa1066830:CDS 45.0%
GGTTCAACACCCAAAAAGAG+AGG + chr7_2:60945865-60945884 Msa1066830:CDS 45.0%
! CTGCTTCATCCCTCTCTTTT+TGG - chr7_2:60945878-60945897 Msa1066840:three_prime_UTR 45.0%
AATAAGCTGAATCCTGGGGT+TGG - chr7_2:60945904-60945923 Msa1066840:three_prime_UTR 45.0%
TTCCCCAAACAAATTCTCCC+AGG + chr7_2:60946170-60946189 Msa1066830:three_prime_UTR 45.0%
AGCAGATAATGCTAGTCCAG+AGG - chr7_2:60946412-60946431 Msa1066840:CDS 45.0%
TTCATCTAGGGATGGATCTC+CGG + chr7_2:60946464-60946483 Msa1066830:three_prime_UTR 45.0%
!!! GAGCAACTTTTTCGAAGACC+CGG - chr7_2:60946486-60946505 Msa1066840:CDS 45.0%
TCCAACATCATTTGACAGCC+AGG + chr7_2:60946701-60946720 Msa1066830:intron 45.0%
ACCTGGCTGTCAAATGATGT+TGG - chr7_2:60946705-60946724 Msa1066840:intron 45.0%
CAGCATTAAGGACTTGGAAG+AGG - chr7_2:60946901-60946920 Msa1066840:CDS 45.0%
GCTGTTGGAGTAAGGTTTAC+AGG - chr7_2:60946957-60946976 Msa1066840:CDS 45.0%
AAACCTTACTCCAACAGCTC+CGG + chr7_2:60946959-60946978 Msa1066830:three_prime_UTR 45.0%
TGGACACACGTTCTTAGAAC+CGG - chr7_2:60946981-60947000 Msa1066840:CDS 45.0%
AAAATGTGGTTACCGGAGTC+CGG + chr7_2:60947698-60947717 Msa1066830:intron 45.0%
GGATTCGTTAAGCTCCGATT+TGG - chr7_2:60947730-60947749 Msa1066840:CDS 45.0%
AACGAATCCGATAACAGGTC+CGG + chr7_2:60947741-60947760 Msa1066830:three_prime_UTR 45.0%
!! TCCCGCTGATTTAACCAAGA+TGG - chr7_2:60947806-60947825 Msa1066840:CDS 45.0%
TAAATCAGCGGGAGTGAAAG+AGG + chr7_2:60947813-60947832 Msa1066830:three_prime_UTR 45.0%
AAATCAGCGGGAGTGAAAGA+GGG + chr7_2:60947814-60947833 Msa1066830:three_prime_UTR 45.0%
TGAGGAGGATGATGATTGGA+AGG - chr7_2:60947860-60947879 Msa1066840:CDS 45.0%
ACGATGAGGAGGATGATGAT+TGG - chr7_2:60947864-60947883 Msa1066840:CDS 45.0%
! TTTTCCGGCGAGGGTAAAAT+GGG + chr7_2:60947924-60947943 Msa1066830:three_prime_UTR 45.0%
! AATTCCCATTTTACCCTCGC+CGG - chr7_2:60947931-60947950 Msa1066840:CDS 45.0%
!! AAAGTAAATAAATATAATTA+TGG + chr7_2:60944307-60944326 Msa1066830:intron 5.0%
GACAGCTATCTCAGCTCTCA+AGG + chr7_2:60944065-60944084 Msa1066830:CDS 50.0%
! TGCAGGCTGCTAAGTTGAGA+TGG + chr7_2:60944224-60944243 Msa1066830:intron 50.0%
TCCACACTGCCAAACAAGTC+TGG - chr7_2:60944250-60944269 None:intergenic 50.0%
GTAGCCAAGCACTATGCTAG+AGG + chr7_2:60944415-60944434 Msa1066830:intron 50.0%
! GTTCTTCTGAAAGGTGGCAG+AGG + chr7_2:60944759-60944778 Msa1066830:intron 50.0%
! TCTTCTGAAAGGTGGCAGAG+GGG + chr7_2:60944761-60944780 Msa1066830:intron 50.0%
GCAGAGGGGCTTAAAGTTGA+GGG + chr7_2:60944775-60944794 Msa1066830:CDS 50.0%
TGGTTGGAGAACGATTTCGC+TGG + chr7_2:60944898-60944917 Msa1066830:CDS 50.0%
TGGAGAACGATTTCGCTGGT+TGG + chr7_2:60944902-60944921 Msa1066830:CDS 50.0%
GCGACCCTGAAACCATAGAA+AGG - chr7_2:60945291-60945310 None:intergenic 50.0%
GCTAGTCCAGAGGAAGTTGA+TGG - chr7_2:60946402-60946421 Msa1066840:CDS 50.0%
TCATCTAGGGATGGATCTCC+GGG + chr7_2:60946465-60946484 Msa1066830:three_prime_UTR 50.0%
! GGACTTGGAAGAGGTACGTA+CGG - chr7_2:60946892-60946911 Msa1066840:intron 50.0%
GTTCTTAGAACCGGAGCTGT+TGG - chr7_2:60946972-60946991 Msa1066840:CDS 50.0%
TTGGGCGACACGATCCAATT+TGG + chr7_2:60947360-60947379 Msa1066830:intron 50.0%
GCTCCAATTGGTTGAAGCTG+TGG - chr7_2:60947445-60947464 Msa1066840:intron 50.0%
GAGATGATGAAACGCCACAC+CGG - chr7_2:60947763-60947782 Msa1066840:CDS 50.0%
! GATGTGGACCTTGCGTTTTC+CGG + chr7_2:60947909-60947928 Msa1066830:three_prime_UTR 50.0%
! GTTTTCCGGCGAGGGTAAAA+TGG + chr7_2:60947923-60947942 Msa1066830:three_prime_UTR 50.0%
CAAAGACACGCCACAACCAA+AGG - chr7_2:60948060-60948079 None:intergenic 50.0%
! GCCAGACTTGTTTGGCAGTG+TGG + chr7_2:60944246-60944265 Msa1066830:CDS 55.0%
GGCAGAGGGGCTTAAAGTTG+AGG + chr7_2:60944774-60944793 Msa1066830:CDS 55.0%
!! AGTGTCAGCCCTTGGTGTTC+TGG - chr7_2:60945513-60945532 None:intergenic 55.0%
GAACCGGAGCTGTTGGAGTA+AGG - chr7_2:60946965-60946984 Msa1066840:CDS 55.0%
TTGGATCGTGTCGCCCAAAG+TGG - chr7_2:60947358-60947377 Msa1066840:intron 55.0%
!! ATTTGGTGTTCGCCGGACTC+CGG - chr7_2:60947713-60947732 Msa1066840:CDS 55.0%
GAGTCCGGCGAACACCAAAT+CGG + chr7_2:60947713-60947732 Msa1066830:intron 55.0%
!! AGCTCCGATTTGGTGTTCGC+CGG - chr7_2:60947720-60947739 Msa1066840:CDS 55.0%
ATCCGATAACAGGTCCGGTG+TGG + chr7_2:60947746-60947765 Msa1066830:three_prime_UTR 55.0%
GAACACGTCGTCCAGTTCGT+CGG + chr7_2:60947885-60947904 Msa1066830:three_prime_UTR 55.0%
TTCATGTCAGGTGCGACCGG+TGG + chr7_2:60944502-60944521 Msa1066830:intron 60.0%
ATGAAGCAGCAGCCAACCCC+AGG + chr7_2:60945889-60945908 Msa1066830:CDS 60.0%
CGCCACACCGGACCTGTTAT+CGG - chr7_2:60947751-60947770 Msa1066840:CDS 60.0%
GCGGGAGTGAAAGAGGGTGA+AGG + chr7_2:60947820-60947839 Msa1066830:three_prime_UTR 60.0%
CGACGTGTTCGACGATGAGG+AGG - chr7_2:60947875-60947894 Msa1066840:CDS 60.0%
GGACGACGTGTTCGACGATG+AGG - chr7_2:60947878-60947897 Msa1066840:CDS 60.0%
CGTCCAGTTCGTCGGTGATG+TGG + chr7_2:60947893-60947912 Msa1066830:three_prime_UTR 60.0%
GGTCCACATCACCGACGAAC+TGG - chr7_2:60947899-60947918 Msa1066840:CDS 60.0%
! GACCTTGCGTTTTCCGGCGA+GGG + chr7_2:60947915-60947934 Msa1066830:three_prime_UTR 60.0%
TACCCTCGCCGGAAAACGCA+AGG - chr7_2:60947920-60947939 Msa1066840:CDS 60.0%
ATGTCAGGTGCGACCGGTGG+TGG + chr7_2:60944505-60944524 Msa1066830:intron 65.0%
!! GTGCGACCGGTGGTGGAAAC+TGG + chr7_2:60944512-60944531 Msa1066830:CDS 65.0%
! GGACCTTGCGTTTTCCGGCG+AGG + chr7_2:60947914-60947933 Msa1066830:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 60943931 60948094 60943931 ID=Msa1066830;Name=Msa1066830
chr7_2 mRNA 60943931 60948094 60943931 ID=Msa1066830-mRNA-1;Parent=Msa1066830;Name=Msa1066830-mRNA-1;_AED=0.27;_eAED=0.27;_QI=78|1|1|1|0.8|0.72|11|1113|268
chr7_2 exon 60943931 60944086 60943931 ID=Msa1066830-mRNA-1:exon:12133;Parent=Msa1066830-mRNA-1
chr7_2 exon 60944229 60944309 60944229 ID=Msa1066830-mRNA-1:exon:12134;Parent=Msa1066830-mRNA-1
chr7_2 exon 60944512 60944601 60944512 ID=Msa1066830-mRNA-1:exon:12135;Parent=Msa1066830-mRNA-1
chr7_2 exon 60944772 60944938 60944772 ID=Msa1066830-mRNA-1:exon:12136;Parent=Msa1066830-mRNA-1
chr7_2 exon 60945115 60945184 60945115 ID=Msa1066830-mRNA-1:exon:12137;Parent=Msa1066830-mRNA-1
chr7_2 exon 60945305 60945384 60945305 ID=Msa1066830-mRNA-1:exon:12138;Parent=Msa1066830-mRNA-1
chr7_2 exon 60945473 60945535 60945473 ID=Msa1066830-mRNA-1:exon:12139;Parent=Msa1066830-mRNA-1
chr7_2 exon 60945641 60945717 60945641 ID=Msa1066830-mRNA-1:exon:12140;Parent=Msa1066830-mRNA-1
chr7_2 exon 60945856 60946556 60945856 ID=Msa1066830-mRNA-1:exon:12141;Parent=Msa1066830-mRNA-1
chr7_2 exon 60946899 60947032 60946899 ID=Msa1066830-mRNA-1:exon:12142;Parent=Msa1066830-mRNA-1
chr7_2 exon 60947716 60948094 60947716 ID=Msa1066830-mRNA-1:exon:12143;Parent=Msa1066830-mRNA-1
chr7_2 five_prime_UTR 60943931 60944008 60943931 ID=Msa1066830-mRNA-1:five_prime_utr;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60944009 60944086 60944009 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60944229 60944309 60944229 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60944512 60944601 60944512 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60944772 60944938 60944772 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60945115 60945184 60945115 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60945305 60945384 60945305 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60945473 60945535 60945473 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60945641 60945717 60945641 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 CDS 60945856 60945956 60945856 ID=Msa1066830-mRNA-1:cds;Parent=Msa1066830-mRNA-1
chr7_2 three_prime_UTR 60945957 60946556 60945957 ID=Msa1066830-mRNA-1:three_prime_utr;Parent=Msa1066830-mRNA-1
chr7_2 three_prime_UTR 60946899 60947032 60946899 ID=Msa1066830-mRNA-1:three_prime_utr;Parent=Msa1066830-mRNA-1
chr7_2 three_prime_UTR 60947716 60948094 60947716 ID=Msa1066830-mRNA-1:three_prime_utr;Parent=Msa1066830-mRNA-1
Gene Sequence

>Msa1066830

ATGGGGCATCTCTATGCATTGGACTTTGATGGAGTTCTCTGTGATACATGTGGAGAGACAGCTATCTCAGCTCTCAAGGCTGCTAAGTTGAGATGGCCAGACTTGTTTGGCAGTGTGGATTCATCCACAGAAGATTGGATTGTTGAACAGATGATTAAAGTGCGACCGGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTGTTGCTGGAGACAATAGTTCCTTCCATCAGAAAGTCATCAGTGGCAGAGGGGCTTAAAGTTGAGGGTATATTGGAGGACTGGTTCAAATTGAAGCCCATTGTCATGGAAGAATGGAATGAGAACAGAGATGATCTGATAGACCTATTTGGAAAGGTCAGAGATGATTGGTTGGAGAACGATTTCGCTGGTTGGATTCAAGGAAACAGATTCTATCCCGGTGTTGCTGATGCATTAAGATTTGCAAGCTCAAAAGTGTACATTGTCACCACAAAACAGGGTCGCTTTGCCGATGCTTTACTTAGAGAACTTGCTGGAATAACTATACCACCAGAGAGAATATATGGTCTAGGAACTGGTCCTAAGGTAGAAACACTGAAGAAGCTTCAAAAAATGCCAGAACACCAAGGGCTGACACTACACTTTGTGGAAGATAGGATTGCAGCCCTTAAAAATGTCATCAAAGAGCCAGAGTTGGATAACTGGAATTTGTATCTAGTGAATTGGGGGTTCAACACCCAAAAAGAGAGGGATGAAGCAGCAGCCAACCCCAGGATTCAGCTTATTGATCTCTCTGATTTCAGTAGCAAGCTGAAATGA

Protein sequence

>Msa1066830

MGHLYALDFDGVLCDTCGETAISALKAAKLRWPDLFGSVDSSTEDWIVEQMIKVRPVVETGYETLLLVRLLLETIVPSIRKSSVAEGLKVEGILEDWFKLKPIVMEEWNENRDDLIDLFGKVRDDWLENDFAGWIQGNRFYPGVADALRFASSKVYIVTTKQGRFADALLRELAGITIPPERIYGLGTGPKVETLKKLQKMPEHQGLTLHFVEDRIAALKNVIKEPELDNWNLYLVNWGFNTQKERDEAAANPRIQLIDLSDFSSKLK*