AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0450920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450920 MtrunA17_Chr3g0095461 99.234 261 2 0 1 261 1 261 0.0 535
Msa0450920 MtrunA17_Chr5g0442381 73.507 268 62 4 2 261 3 269 2.11e-132 375
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450920 AT1G06680.1 74.717 265 61 2 1 261 1 263 3.81e-140 394
Msa0450920 AT1G06680.2 83.333 180 30 0 82 261 40 219 5.08e-110 317
Msa0450920 AT2G30790.1 80.000 125 25 0 137 261 1 125 3.58e-70 212

Find 89 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGACAAGAGGTGGTTTA+AGG 0.210913 3_3:+37434358 Msa0450920:CDS
CTTGGAAAACAAGCCTTCTT+TGG 0.229953 3_3:+37433773 Msa0450920:CDS
TTGCTTGGATTCCACTTTGC+TGG 0.251510 3_3:-37433024 None:intergenic
GAAGAAATCAACCTCGTAAA+TGG 0.255505 3_3:+37434598 Msa0450920:three_prime_UTR
ACCTGAGGAGTTCCTATCTA+AGG 0.292484 3_3:+37433161 Msa0450920:CDS
TTTGTTGCAGCCAATGTCTT+TGG 0.295368 3_3:+37432940 Msa0450920:intron
TGGAGTTGTAAGAGCATATT+GGG 0.306962 3_3:-37432000 None:intergenic
CTTTGAATTACATTTAGATA+TGG 0.310025 3_3:-37431864 None:intergenic
ATGGAGTTGTAAGAGCATAT+TGG 0.315427 3_3:-37432001 None:intergenic
AACAATATGGTTTGGTTTGT+TGG 0.330765 3_3:-37432054 None:intergenic
ATTGAACATGTGGTTGGTTT+TGG 0.331888 3_3:-37431826 None:intergenic
TTGGTTTGTTGGTAACAATT+TGG 0.344896 3_3:-37432043 None:intergenic
TATACTAGACTCTAGCAAAA+TGG 0.359665 3_3:+37431953 Msa0450920:exon
GGGAACTCTCTCTCTTTGCT+TGG 0.385361 3_3:-37433039 None:intergenic
CGTTGAGACAAACTTCTAGA+TGG 0.406600 3_3:-37432020 None:intergenic
TGATGTGGGATAAGGTTGTA+AGG 0.409648 3_3:-37431758 None:intergenic
AAATTACCTCTGAATCAGTT+TGG 0.412596 3_3:-37433796 None:intergenic
GTTGCTTAAATTAAGAACTT+TGG 0.414675 3_3:+37434422 Msa0450920:exon
GGAGACAAGAGGTGGTTTAA+GGG 0.417477 3_3:+37434359 Msa0450920:CDS
TTGAATCCATCTCCATTGTA+TGG 0.419187 3_3:-37432991 None:intergenic
GAGAGTTCAGCACCAGTGAT+TGG 0.419628 3_3:+37434212 Msa0450920:CDS
CTTATTCTTAAGTAAGCACT+TGG 0.421409 3_3:+37434472 Msa0450920:three_prime_UTR
TGCTGCTGCTGTTGGCTCAA+AGG 0.424491 3_3:+37432157 Msa0450920:CDS
CTCCTTGGTGCTGCTGCTGT+TGG 0.429596 3_3:+37432149 Msa0450920:CDS
TGCATTTGTGATGTGGGATA+AGG 0.430538 3_3:-37431766 None:intergenic
TCTGTGCCTTGCAAACAATA+TGG 0.436546 3_3:-37432067 None:intergenic
TGAATCAGTTTGGCCAAAGA+AGG 0.439035 3_3:-37433786 None:intergenic
TTGCAGGTGGACTATTTGCT+TGG 0.444087 3_3:+37433755 Msa0450920:intron
AGATTCTTAAAACCTTAGAT+AGG 0.450368 3_3:-37433173 None:intergenic
TTGGATTTGAAGTGGATGAT+TGG 0.452855 3_3:-37431800 None:intergenic
TTAGCACTTTCTGTACTCCT+TGG 0.453497 3_3:+37432134 Msa0450920:CDS
CTTTGCCTTTCCAAAGACAT+TGG 0.454759 3_3:-37432950 None:intergenic
AAGGATATGTCTCCGGCTCT+TGG 0.458419 3_3:+37434639 Msa0450920:three_prime_UTR
AATGAATGAGACTGAGAGTA+GGG 0.461426 3_3:-37431903 None:intergenic
TTTCACGATTGTTCCACCAT+TGG 0.463331 3_3:+37434777 Msa0450920:three_prime_UTR
ATATAGTTTAAAATTCTCAA+TGG 0.470465 3_3:-37434557 None:intergenic
AGAGAGAGAGTTCCCTGGTC+AGG 0.474121 3_3:+37433047 Msa0450920:CDS
TCACCTGCTGATGCTGCCTA+TGG 0.482457 3_3:+37432182 Msa0450920:CDS
TACATTTGCAAGGCTCAAGC+TGG 0.487789 3_3:+37434338 Msa0450920:CDS
GAATGAATGAGACTGAGAGT+AGG 0.488803 3_3:-37431904 None:intergenic
ATTACAGCAACTGTAAATGA+TGG 0.489996 3_3:+37434308 Msa0450920:CDS
GCCTTGCAAACAATATGGTT+TGG 0.497299 3_3:-37432062 None:intergenic
TCTCCATAGGCAGCATCAGC+AGG 0.502473 3_3:-37432185 None:intergenic
TTTGATTGCATTTGTGATGT+GGG 0.512792 3_3:-37431772 None:intergenic
TTACAGTTGCTGTAATCAGC+TGG 0.513113 3_3:-37434301 None:intergenic
TAAATTAAGAACTTTGGTGA+AGG 0.520267 3_3:+37434428 Msa0450920:exon
GATGCTGCCTATGGAGAAGC+TGG 0.528839 3_3:+37432191 Msa0450920:CDS
CTGTCAGTGTTGTTTCTCGT+AGG 0.529367 3_3:+37432111 Msa0450920:CDS
TATCTCAAAGGATATGTCTC+CGG 0.531045 3_3:+37434632 Msa0450920:three_prime_UTR
TACTGTTTCCCACCAATCAC+TGG 0.540361 3_3:-37434224 None:intergenic
ACCTTAGATAGGAACTCCTC+AGG 0.540944 3_3:-37433162 None:intergenic
GTCAGTTGTTTGGACAAGAA+CGG 0.541430 3_3:-37433112 None:intergenic
ACCAAACCATATTGTTTGCA+AGG 0.544470 3_3:+37432061 Msa0450920:CDS
AACTGTTGGTTCCAGCAAAG+TGG 0.546443 3_3:+37433013 Msa0450920:CDS
TCGTATCTAAGAACCTGACC+AGG 0.546447 3_3:-37433060 None:intergenic
GGATATCTTCAACCAAGAGC+CGG 0.548027 3_3:-37434651 None:intergenic
ATTTGATTGCATTTGTGATG+TGG 0.551626 3_3:-37431773 None:intergenic
TTTGGATATTGGATTTGAAG+TGG 0.551682 3_3:-37431808 None:intergenic
TGTGGCATTGAACATGTGGT+TGG 0.552144 3_3:-37431832 None:intergenic
TGCAGCCAATGTCTTTGGAA+AGG 0.554080 3_3:+37432945 Msa0450920:intron
AAATTAAGAACTTTGGTGAA+GGG 0.554191 3_3:+37434429 Msa0450920:exon
CTTTGGCCAAACTGATTCAG+AGG 0.554518 3_3:+37433790 Msa0450920:CDS
TGGAGATGGATTCAAACTGT+TGG 0.556213 3_3:+37432999 Msa0450920:CDS
GATAAATAAAAGTATCTCAA+AGG 0.567547 3_3:+37434620 Msa0450920:three_prime_UTR
TAAGATGTTTGCCACAGCTA+CGG 0.572617 3_3:-37434189 None:intergenic
AGTTCAGCACCAGTGATTGG+TGG 0.574912 3_3:+37434215 Msa0450920:CDS
GTTCAGCACCAGTGATTGGT+GGG 0.588274 3_3:+37434216 Msa0450920:CDS
AGGACTGCTGATGGAGATGA+AGG 0.590065 3_3:+37434269 Msa0450920:CDS
CTCCTCAGGTGAACCATAGT+CGG 0.592937 3_3:-37433148 None:intergenic
TGATACAAATGCCGTAGCTG+TGG 0.593917 3_3:+37434178 Msa0450920:CDS
AGCAAAGAGAGAGAGTTCCC+TGG 0.594993 3_3:+37433042 Msa0450920:CDS
GGCACAGAAACAAGATGTTG+AGG 0.599187 3_3:+37432082 Msa0450920:CDS
CTGATGTGGCATTGAACATG+TGG 0.613326 3_3:-37431836 None:intergenic
GGGAGCAAGAAAGTTTGTTG+AGG 0.618163 3_3:+37434379 Msa0450920:CDS
GTGCAAGAAGCATTGTGTAG+AGG 0.636043 3_3:-37431976 None:intergenic
TGGAAAGCTATACATTTGCA+AGG 0.638163 3_3:+37434328 Msa0450920:CDS
AGCCAACAGCAGCAGCACCA+AGG 0.639865 3_3:-37432151 None:intergenic
AGGCTCAAGCTGGAGACAAG+AGG 0.642347 3_3:+37434348 Msa0450920:CDS
GATGTGGGATAAGGTTGTAA+GGG 0.646724 3_3:-37431757 None:intergenic
GAGTAGGGAGAGAGTGTGTG+TGG 0.649481 3_3:-37431888 None:intergenic
CTCAAGCTGGAGACAAGAGG+TGG 0.660302 3_3:+37434351 Msa0450920:CDS
ACTGCTGATGGAGATGAAGG+TGG 0.671218 3_3:+37434272 Msa0450920:CDS
GGAGTTGTAAGAGCATATTG+GGG 0.678383 3_3:-37431999 None:intergenic
TAGATATGGTGTATCTGATG+TGG 0.684872 3_3:-37431850 None:intergenic
CACCGACTATGGTTCACCTG+AGG 0.694411 3_3:+37433146 Msa0450920:CDS
CGTATCTAAGAACCTGACCA+GGG 0.700077 3_3:-37433059 None:intergenic
AAATTAGCTTGTGCATGATG+CGG 0.702379 3_3:-37434756 None:intergenic
TGGTCAGGTTCTTAGATACG+AGG 0.713849 3_3:+37433062 Msa0450920:CDS
GAGTTGTAAGAGCATATTGG+GGG 0.741082 3_3:-37431998 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAATATATGTTCATA+AGG - chr3_3:37433351-37433370 None:intergenic 10.0%
!! ATATATGAAAAATCATTTAT+TGG + chr3_3:37434576-37434595 Msa0450920:three_prime_UTR 10.0%
!!! TATTCTAAGTAGTATTTTAA+AGG - chr3_3:37432533-37432552 None:intergenic 15.0%
!! TTGTTTAATATTTAATCGAA+CGG + chr3_3:37432561-37432580 Msa0450920:intron 15.0%
!!! ATATAGTTTAAAATTCTCAA+TGG - chr3_3:37434560-37434579 None:intergenic 15.0%
!!! TTTTGTTGTTGATAAAATTT+AGG - chr3_3:37434675-37434694 None:intergenic 15.0%
!!! TTTTATCAACAACAAAAATA+AGG + chr3_3:37434678-37434697 Msa0450920:intron 15.0%
!! CTTTGAATTACATTTAGATA+TGG - chr3_3:37431867-37431886 None:intergenic 20.0%
!!! GAATACAATTTTCTAATCTT+AGG - chr3_3:37432272-37432291 None:intergenic 20.0%
!!! ATGTTAATCACATTTTACTT+TGG + chr3_3:37432780-37432799 Msa0450920:intron 20.0%
!!! TTAGAAATTTGAAGTTATAG+AGG - chr3_3:37433469-37433488 None:intergenic 20.0%
!! ATTCTTCTACTTAATGTATT+AGG + chr3_3:37433595-37433614 Msa0450920:intron 20.0%
!!! GATAAATAAAAGTATCTCAA+AGG + chr3_3:37434620-37434639 Msa0450920:three_prime_UTR 20.0%
!! TTTAAATAAGGCAAATTCTA+TGG + chr3_3:37434713-37434732 Msa0450920:intron 20.0%
! AAGTTGTTTATAAATGTGAC+CGG + chr3_3:37432371-37432390 Msa0450920:intron 25.0%
! TTTAATATTTAATCGAACGG+TGG + chr3_3:37432564-37432583 Msa0450920:intron 25.0%
! TAATCAGAATAGTTGTATTG+TGG + chr3_3:37432745-37432764 Msa0450920:intron 25.0%
! AGAAATCAAATGAAAACTAG+TGG + chr3_3:37432821-37432840 Msa0450920:intron 25.0%
! AGATTCTTAAAACCTTAGAT+AGG - chr3_3:37433176-37433195 None:intergenic 25.0%
! TCAACAAATATTGTATGTTG+AGG - chr3_3:37433385-37433404 None:intergenic 25.0%
! TTCCATTTGGAAAAAAAGTT+TGG + chr3_3:37433544-37433563 Msa0450920:intron 25.0%
!!! AACCAAACTTTTTTTCCAAA+TGG - chr3_3:37433549-37433568 None:intergenic 25.0%
!!! AAGTTTGGTTCAATGATTTT+TGG + chr3_3:37433559-37433578 Msa0450920:intron 25.0%
! TTCTACTTAATGTATTAGGA+AGG + chr3_3:37433599-37433618 Msa0450920:intron 25.0%
! AAAATGCCTTTGAACTTTAA+GGG + chr3_3:37433686-37433705 Msa0450920:intron 25.0%
! GTTGCTTAAATTAAGAACTT+TGG + chr3_3:37434422-37434441 Msa0450920:exon 25.0%
! TAAATTAAGAACTTTGGTGA+AGG + chr3_3:37434428-37434447 Msa0450920:exon 25.0%
! AAATTAAGAACTTTGGTGAA+GGG + chr3_3:37434429-37434448 Msa0450920:exon 25.0%
!!! ACTTGGAGTTTTAATCATAA+TGG + chr3_3:37434489-37434508 Msa0450920:three_prime_UTR 25.0%
!!! CTTTTATTTATCCATTTACG+AGG - chr3_3:37434612-37434631 None:intergenic 25.0%
TTTGATTGCATTTGTGATGT+GGG - chr3_3:37431775-37431794 None:intergenic 30.0%
ATTTGATTGCATTTGTGATG+TGG - chr3_3:37431776-37431795 None:intergenic 30.0%
TTTGGATATTGGATTTGAAG+TGG - chr3_3:37431811-37431830 None:intergenic 30.0%
TATACTAGACTCTAGCAAAA+TGG + chr3_3:37431953-37431972 Msa0450920:exon 30.0%
!! TTGGTTTGTTGGTAACAATT+TGG - chr3_3:37432046-37432065 None:intergenic 30.0%
!! AACAATATGGTTTGGTTTGT+TGG - chr3_3:37432057-37432076 None:intergenic 30.0%
CATTATATAACTGACGTATC+TGG - chr3_3:37432336-37432355 None:intergenic 30.0%
ACCATTGTATGAAGATTAGA+CGG + chr3_3:37432479-37432498 Msa0450920:intron 30.0%
TCAAATGAAAACTAGTGGTT+TGG + chr3_3:37432826-37432845 Msa0450920:intron 30.0%
!! CTTATTCTCAAAGTCACTTT+TGG - chr3_3:37432899-37432918 None:intergenic 30.0%
! TGTTCTTTTTGTCAGTTGTT+TGG - chr3_3:37433125-37433144 None:intergenic 30.0%
CAAATTTCTAAATTCGTCAC+TGG + chr3_3:37433478-37433497 Msa0450920:intron 30.0%
CAAATAAGATTACCACCAAT+AGG + chr3_3:37433508-37433527 Msa0450920:intron 30.0%
GAAAATGCCTTTGAACTTTA+AGG + chr3_3:37433685-37433704 Msa0450920:intron 30.0%
TTATTGCCCTTAAAGTTCAA+AGG - chr3_3:37433695-37433714 None:intergenic 30.0%
! CTTGGCTGAAATTTAAGATT+TGG + chr3_3:37433723-37433742 Msa0450920:intron 30.0%
AAATTACCTCTGAATCAGTT+TGG - chr3_3:37433799-37433818 None:intergenic 30.0%
ACAGTACATTTCATAATGCA+GGG - chr3_3:37433840-37433859 None:intergenic 30.0%
!! CATCATCTTTTAAGGAAATC+TGG - chr3_3:37433867-37433886 None:intergenic 30.0%
! CCAATATGCATCATCTTTTA+AGG - chr3_3:37433875-37433894 None:intergenic 30.0%
CCTTAAAAGATGATGCATAT+TGG + chr3_3:37433872-37433891 Msa0450920:intron 30.0%
TTGAATGTAACCACATTTGT+CGG + chr3_3:37433993-37434012 Msa0450920:intron 30.0%
ATGATGAGTTGTGCTAATAA+GGG - chr3_3:37434121-37434140 None:intergenic 30.0%
AATGATGAGTTGTGCTAATA+AGG - chr3_3:37434122-37434141 None:intergenic 30.0%
!! ACAACATATCAGTTTTGACA+AGG + chr3_3:37434249-37434268 Msa0450920:CDS 30.0%
ATTACAGCAACTGTAAATGA+TGG + chr3_3:37434308-37434327 Msa0450920:CDS 30.0%
CTTATTCTTAAGTAAGCACT+TGG + chr3_3:37434472-37434491 Msa0450920:three_prime_UTR 30.0%
! TTGGATTTGAAGTGGATGAT+TGG - chr3_3:37431803-37431822 None:intergenic 35.0%
!!! ATGTGGTTGGTTTTGGATAT+TGG - chr3_3:37431822-37431841 None:intergenic 35.0%
!!! ATTGAACATGTGGTTGGTTT+TGG - chr3_3:37431829-37431848 None:intergenic 35.0%
TAGATATGGTGTATCTGATG+TGG - chr3_3:37431853-37431872 None:intergenic 35.0%
AATGAATGAGACTGAGAGTA+GGG - chr3_3:37431906-37431925 None:intergenic 35.0%
! TGGAGTTGTAAGAGCATATT+GGG - chr3_3:37432003-37432022 None:intergenic 35.0%
! ATGGAGTTGTAAGAGCATAT+TGG - chr3_3:37432004-37432023 None:intergenic 35.0%
ACCAAACCATATTGTTTGCA+AGG + chr3_3:37432061-37432080 Msa0450920:CDS 35.0%
AAAAATACCAGCTTCTCCAT+AGG - chr3_3:37432201-37432220 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + chr3_3:37432374-37432393 Msa0450920:intron 35.0%
TGTTTATAAATGTGACCGGA+GGG + chr3_3:37432375-37432394 Msa0450920:intron 35.0%
TCGTCTGATCTTTAATCCAA+TGG + chr3_3:37432418-37432437 Msa0450920:intron 35.0%
TCTGATCTTTAATCCAATGG+TGG + chr3_3:37432421-37432440 Msa0450920:intron 35.0%
ATAGCTCATGCATGTTATGT+TGG + chr3_3:37432663-37432682 Msa0450920:intron 35.0%
! ACAGACTTTTTGCCATACAA+TGG + chr3_3:37432979-37432998 Msa0450920:CDS 35.0%
! TTTTTGCCATACAATGGAGA+TGG + chr3_3:37432985-37433004 Msa0450920:CDS 35.0%
TTGAATCCATCTCCATTGTA+TGG - chr3_3:37432994-37433013 None:intergenic 35.0%
! AAAAAGAACATCACCGACTA+TGG + chr3_3:37433135-37433154 Msa0450920:CDS 35.0%
! ATATTTTACAACCGTTCTCG+AGG + chr3_3:37433250-37433269 Msa0450920:intron 35.0%
! TATTTTACAACCGTTCTCGA+GGG + chr3_3:37433251-37433270 Msa0450920:intron 35.0%
ACATTAAATTCCCTCGAGAA+CGG - chr3_3:37433264-37433283 None:intergenic 35.0%
TCGAGGGAATTTAATGTTAC+AGG + chr3_3:37433267-37433286 Msa0450920:intron 35.0%
TTTCTAAATTCGTCACTGGT+TGG + chr3_3:37433482-37433501 Msa0450920:intron 35.0%
AATCCAAAGATAGCTCCTAT+TGG - chr3_3:37433526-37433545 None:intergenic 35.0%
AGCTATCTTTGGATTCCATT+TGG + chr3_3:37433531-37433550 Msa0450920:intron 35.0%
AAAAATCGACGAATGTTCAG+TGG + chr3_3:37433634-37433653 Msa0450920:intron 35.0%
AGGGCAATAACAAAAGTTCT+TGG + chr3_3:37433705-37433724 Msa0450920:intron 35.0%
!!! GATTTGGTTTTGATCTTTGC+AGG + chr3_3:37433739-37433758 Msa0450920:intron 35.0%
CACAGTACATTTCATAATGC+AGG - chr3_3:37433841-37433860 None:intergenic 35.0%
TCTATGTGTGAGTTCATATC+TGG - chr3_3:37433939-37433958 None:intergenic 35.0%
TTTCTGAACTTGAATTCCTC+AGG + chr3_3:37434148-37434167 Msa0450920:intron 35.0%
TTCTGAACTTGAATTCCTCA+GGG + chr3_3:37434149-37434168 Msa0450920:intron 35.0%
TGGAAAGCTATACATTTGCA+AGG + chr3_3:37434328-37434347 Msa0450920:CDS 35.0%
GAAGAAATCAACCTCGTAAA+TGG + chr3_3:37434598-37434617 Msa0450920:three_prime_UTR 35.0%
TATCTCAAAGGATATGTCTC+CGG + chr3_3:37434632-37434651 Msa0450920:three_prime_UTR 35.0%
!! AAATTAGCTTGTGCATGATG+CGG - chr3_3:37434759-37434778 None:intergenic 35.0%
GATGTGGGATAAGGTTGTAA+GGG - chr3_3:37431760-37431779 None:intergenic 40.0%
TGATGTGGGATAAGGTTGTA+AGG - chr3_3:37431761-37431780 None:intergenic 40.0%
TGCATTTGTGATGTGGGATA+AGG - chr3_3:37431769-37431788 None:intergenic 40.0%
GAATGAATGAGACTGAGAGT+AGG - chr3_3:37431907-37431926 None:intergenic 40.0%
! GAGTTGTAAGAGCATATTGG+GGG - chr3_3:37432001-37432020 None:intergenic 40.0%
! GGAGTTGTAAGAGCATATTG+GGG - chr3_3:37432002-37432021 None:intergenic 40.0%
CGTTGAGACAAACTTCTAGA+TGG - chr3_3:37432023-37432042 None:intergenic 40.0%
GCCTTGCAAACAATATGGTT+TGG - chr3_3:37432065-37432084 None:intergenic 40.0%
TCTGTGCCTTGCAAACAATA+TGG - chr3_3:37432070-37432089 None:intergenic 40.0%
TTAGCACTTTCTGTACTCCT+TGG + chr3_3:37432134-37432153 Msa0450920:CDS 40.0%
GCCGTCTAATCTTCATACAA+TGG - chr3_3:37432483-37432502 None:intergenic 40.0%
TTTGTTGCAGCCAATGTCTT+TGG + chr3_3:37432940-37432959 Msa0450920:intron 40.0%
CTTTGCCTTTCCAAAGACAT+TGG - chr3_3:37432953-37432972 None:intergenic 40.0%
! TGGAGATGGATTCAAACTGT+TGG + chr3_3:37432999-37433018 Msa0450920:CDS 40.0%
GTCAGTTGTTTGGACAAGAA+CGG - chr3_3:37433115-37433134 None:intergenic 40.0%
! TTCATAAGGTGTCAGCTCAA+TGG - chr3_3:37433337-37433356 None:intergenic 40.0%
!!! TTGGTTTTGATCTTTGCAGG+TGG + chr3_3:37433742-37433761 Msa0450920:intron 40.0%
CTTGGAAAACAAGCCTTCTT+TGG + chr3_3:37433773-37433792 Msa0450920:CDS 40.0%
TGAATCAGTTTGGCCAAAGA+AGG - chr3_3:37433789-37433808 None:intergenic 40.0%
ACCAACAATTCGAATCGAAG+GGG - chr3_3:37434058-37434077 None:intergenic 40.0%
CACCAACAATTCGAATCGAA+GGG - chr3_3:37434059-37434078 None:intergenic 40.0%
ACACCAACAATTCGAATCGA+AGG - chr3_3:37434060-37434079 None:intergenic 40.0%
TTTGTATCAAAACCACCCTG+AGG - chr3_3:37434167-37434186 None:intergenic 40.0%
TAAGATGTTTGCCACAGCTA+CGG - chr3_3:37434192-37434211 None:intergenic 40.0%
TTACAGTTGCTGTAATCAGC+TGG - chr3_3:37434304-37434323 None:intergenic 40.0%
TTTCACGATTGTTCCACCAT+TGG + chr3_3:37434777-37434796 Msa0450920:three_prime_UTR 40.0%
! TGTGGCATTGAACATGTGGT+TGG - chr3_3:37431835-37431854 None:intergenic 45.0%
! CTGATGTGGCATTGAACATG+TGG - chr3_3:37431839-37431858 None:intergenic 45.0%
!! GTGCAAGAAGCATTGTGTAG+AGG - chr3_3:37431979-37431998 None:intergenic 45.0%
GGCACAGAAACAAGATGTTG+AGG + chr3_3:37432082-37432101 Msa0450920:CDS 45.0%
!! CTGTCAGTGTTGTTTCTCGT+AGG + chr3_3:37432111-37432130 Msa0450920:CDS 45.0%
! GCTCTAAGTTATACTCCCTC+CGG - chr3_3:37432393-37432412 None:intergenic 45.0%
TAGTCTCAAGTCTCCACCAT+TGG - chr3_3:37432437-37432456 None:intergenic 45.0%
! TGCAGCCAATGTCTTTGGAA+AGG + chr3_3:37432945-37432964 Msa0450920:intron 45.0%
!! AACTGTTGGTTCCAGCAAAG+TGG + chr3_3:37433013-37433032 Msa0450920:CDS 45.0%
TTGCTTGGATTCCACTTTGC+TGG - chr3_3:37433027-37433046 None:intergenic 45.0%
CGTATCTAAGAACCTGACCA+GGG - chr3_3:37433062-37433081 None:intergenic 45.0%
TCGTATCTAAGAACCTGACC+AGG - chr3_3:37433063-37433082 None:intergenic 45.0%
TGGTCAGGTTCTTAGATACG+AGG + chr3_3:37433062-37433081 Msa0450920:CDS 45.0%
ACCTGAGGAGTTCCTATCTA+AGG + chr3_3:37433161-37433180 Msa0450920:CDS 45.0%
ACCTTAGATAGGAACTCCTC+AGG - chr3_3:37433165-37433184 None:intergenic 45.0%
CCAAAGATAGCTCCTATTGG+TGG - chr3_3:37433523-37433542 None:intergenic 45.0%
CCACCAATAGGAGCTATCTT+TGG + chr3_3:37433520-37433539 Msa0450920:intron 45.0%
!! TTGCAGGTGGACTATTTGCT+TGG + chr3_3:37433755-37433774 Msa0450920:intron 45.0%
! CTTTGGCCAAACTGATTCAG+AGG + chr3_3:37433790-37433809 Msa0450920:CDS 45.0%
GACATTGACACCGACAAATG+TGG - chr3_3:37434006-37434025 None:intergenic 45.0%
! ACCCCTTCGATTCGAATTGT+TGG + chr3_3:37434054-37434073 Msa0450920:intron 45.0%
TGAACTTGAATTCCTCAGGG+TGG + chr3_3:37434152-37434171 Msa0450920:intron 45.0%
TGATACAAATGCCGTAGCTG+TGG + chr3_3:37434178-37434197 Msa0450920:CDS 45.0%
TACTGTTTCCCACCAATCAC+TGG - chr3_3:37434227-37434246 None:intergenic 45.0%
!! GTTTTGACAAGGACTGCTGA+TGG + chr3_3:37434260-37434279 Msa0450920:CDS 45.0%
TACATTTGCAAGGCTCAAGC+TGG + chr3_3:37434338-37434357 Msa0450920:CDS 45.0%
TGGAGACAAGAGGTGGTTTA+AGG + chr3_3:37434358-37434377 Msa0450920:CDS 45.0%
GGAGACAAGAGGTGGTTTAA+GGG + chr3_3:37434359-37434378 Msa0450920:CDS 45.0%
!! GGGAGCAAGAAAGTTTGTTG+AGG + chr3_3:37434379-37434398 Msa0450920:CDS 45.0%
GGATATCTTCAACCAAGAGC+CGG - chr3_3:37434654-37434673 None:intergenic 45.0%
!!! CTAATTTTTATTTTTAAATA+AGG + chr3_3:37434701-37434720 Msa0450920:intron 5.0%
ACTGCCTGAATCTGTGACTG+CGG + chr3_3:37432596-37432615 Msa0450920:intron 50.0%
TTCTCCGCAGTCACAGATTC+AGG - chr3_3:37432603-37432622 None:intergenic 50.0%
GGGAACTCTCTCTCTTTGCT+TGG - chr3_3:37433042-37433061 None:intergenic 50.0%
AGCAAAGAGAGAGAGTTCCC+TGG + chr3_3:37433042-37433061 Msa0450920:CDS 50.0%
CTCCTCAGGTGAACCATAGT+CGG - chr3_3:37433151-37433170 None:intergenic 50.0%
TGTCAGACACTGACACATGC+TGG + chr3_3:37434022-37434041 Msa0450920:intron 50.0%
GAGAGTTCAGCACCAGTGAT+TGG + chr3_3:37434212-37434231 Msa0450920:CDS 50.0%
AGTTCAGCACCAGTGATTGG+TGG + chr3_3:37434215-37434234 Msa0450920:CDS 50.0%
GTTCAGCACCAGTGATTGGT+GGG + chr3_3:37434216-37434235 Msa0450920:CDS 50.0%
AGGACTGCTGATGGAGATGA+AGG + chr3_3:37434269-37434288 Msa0450920:CDS 50.0%
ACTGCTGATGGAGATGAAGG+TGG + chr3_3:37434272-37434291 Msa0450920:CDS 50.0%
AAGGATATGTCTCCGGCTCT+TGG + chr3_3:37434639-37434658 Msa0450920:three_prime_UTR 50.0%
! GAGTAGGGAGAGAGTGTGTG+TGG - chr3_3:37431891-37431910 None:intergenic 55.0%
!! TGCTGCTGCTGTTGGCTCAA+AGG + chr3_3:37432157-37432176 Msa0450920:CDS 55.0%
TCACCTGCTGATGCTGCCTA+TGG + chr3_3:37432182-37432201 Msa0450920:CDS 55.0%
TCTCCATAGGCAGCATCAGC+AGG - chr3_3:37432188-37432207 None:intergenic 55.0%
GATGCTGCCTATGGAGAAGC+TGG + chr3_3:37432191-37432210 Msa0450920:CDS 55.0%
AGAGAGAGAGTTCCCTGGTC+AGG + chr3_3:37433047-37433066 Msa0450920:CDS 55.0%
! CACCGACTATGGTTCACCTG+AGG + chr3_3:37433146-37433165 Msa0450920:CDS 55.0%
AGGCTCAAGCTGGAGACAAG+AGG + chr3_3:37434348-37434367 Msa0450920:CDS 55.0%
CTCAAGCTGGAGACAAGAGG+TGG + chr3_3:37434351-37434370 Msa0450920:CDS 55.0%
!! CTCCTTGGTGCTGCTGCTGT+TGG + chr3_3:37432149-37432168 Msa0450920:CDS 60.0%
AGCCAACAGCAGCAGCACCA+AGG - chr3_3:37432154-37432173 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 37431752 37434810 37431752 ID=Msa0450920;Name=Msa0450920
chr3_3 mRNA 37431752 37434810 37431752 ID=Msa0450920-mRNA-1;Parent=Msa0450920;Name=Msa0450920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=220|1|1|1|0.75|0.6|5|318|261
chr3_3 exon 37431752 37432212 37431752 ID=Msa0450920-mRNA-1:exon:6792;Parent=Msa0450920-mRNA-1
chr3_3 exon 37432950 37433182 37432950 ID=Msa0450920-mRNA-1:exon:6793;Parent=Msa0450920-mRNA-1
chr3_3 exon 37433761 37433811 37433761 ID=Msa0450920-mRNA-1:exon:6794;Parent=Msa0450920-mRNA-1
chr3_3 exon 37434170 37434672 37434170 ID=Msa0450920-mRNA-1:exon:6795;Parent=Msa0450920-mRNA-1
chr3_3 exon 37434735 37434810 37434735 ID=Msa0450920-mRNA-1:exon:6796;Parent=Msa0450920-mRNA-1
chr3_3 five_prime_UTR 37431752 37431971 37431752 ID=Msa0450920-mRNA-1:five_prime_utr;Parent=Msa0450920-mRNA-1
chr3_3 CDS 37431972 37432212 37431972 ID=Msa0450920-mRNA-1:cds;Parent=Msa0450920-mRNA-1
chr3_3 CDS 37432950 37433182 37432950 ID=Msa0450920-mRNA-1:cds;Parent=Msa0450920-mRNA-1
chr3_3 CDS 37433761 37433811 37433761 ID=Msa0450920-mRNA-1:cds;Parent=Msa0450920-mRNA-1
chr3_3 CDS 37434170 37434430 37434170 ID=Msa0450920-mRNA-1:cds;Parent=Msa0450920-mRNA-1
chr3_3 three_prime_UTR 37434431 37434672 37434431 ID=Msa0450920-mRNA-1:three_prime_utr;Parent=Msa0450920-mRNA-1
chr3_3 three_prime_UTR 37434735 37434810 37434735 ID=Msa0450920-mRNA-1:three_prime_utr;Parent=Msa0450920-mRNA-1
Gene Sequence

>Msa0450920

ATGGCCTCTACACAATGCTTCTTGCACCCCCAATATGCTCTTACAACTCCATCTAGAAGTTTGTCTCAACGCCAAATTGTTACCAACAAACCAAACCATATTGTTTGCAAGGCACAGAAACAAGATGTTGAGGATGTTGCTGTCAGTGTTGTTTCTCGTAGGTTAGCACTTTCTGTACTCCTTGGTGCTGCTGCTGTTGGCTCAAAGGTTTCACCTGCTGATGCTGCCTATGGAGAAGCTGCCAATGTCTTTGGAAAGGCAAAGACAAACACAGACTTTTTGCCATACAATGGAGATGGATTCAAACTGTTGGTTCCAGCAAAGTGGAATCCAAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGATACGAGGATAATTTTGATGCAACAAGCAATGTTTCCGTTCTTGTCCAAACAACTGACAAAAAGAACATCACCGACTATGGTTCACCTGAGGAGTTCCTATCTAAGGTGGACTATTTGCTTGGAAAACAAGCCTTCTTTGGCCAAACTGATTCAGAGGGTGGTTTTGATACAAATGCCGTAGCTGTGGCAAACATCTTAGAGAGTTCAGCACCAGTGATTGGTGGGAAACAGTATTACAACATATCAGTTTTGACAAGGACTGCTGATGGAGATGAAGGTGGAAAGCACCAGCTGATTACAGCAACTGTAAATGATGGAAAGCTATACATTTGCAAGGCTCAAGCTGGAGACAAGAGGTGGTTTAAGGGAGCAAGAAAGTTTGTTGAGGACACTGCAAGTTCTTTCAGTGTTGCTTAA

Protein sequence

>Msa0450920

MASTQCFLHPQYALTTPSRSLSQRQIVTNKPNHIVCKAQKQDVEDVAVSVVSRRLALSVLLGAAAVGSKVSPADAAYGEAANVFGKAKTNTDFLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKNITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA*