AlfalfaGEDB | Msa0450920

M. sativa cultivar zhongmu-4 / Msa0450920

KEGG: K02717
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0019898 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0097159 GO:0098542 GO:1901363
PFAM: PF01789.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450920	XP_013459618.1	99.234	261	2	0	1	261	1	261	0.0	535

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450920	sp\|P16059\|PSBP_PEA	94.253	261	13	1	1	261	1	259	0.0	508

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450920	B7FJ16	99.234	261	2	0	1	261	1	261	0.0	535

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0450920	0.809611	1.736623e-50	-8.615850e-47
Msa0000610	Msa0450920	0.842096	3.186334e-58	-8.615850e-47
Msa0000800	Msa0450920	-0.836463	9.219865e-57	-8.615850e-47
Msa0001040	Msa0450920	0.832724	8.028666e-56	-8.615850e-47
Msa0001420	Msa0450920	0.837690	4.479226e-57	-8.615850e-47
Msa0001510	Msa0450920	0.906002	2.362042e-80	-8.615850e-47
Msa0001540	Msa0450920	0.863709	2.051004e-64	-8.615850e-47
Msa0001550	Msa0450920	0.818534	1.864670e-52	-8.615850e-47
Msa0002110	Msa0450920	0.863636	2.160975e-64	-8.615850e-47
Msa0002690	Msa0450920	0.937846	1.781641e-98	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450920	MtrunA17_Chr3g0095461	99.234	261	2	0	1	261	1	261	0.0	535
Msa0450920	MtrunA17_Chr5g0442381	73.507	268	62	4	2	261	3	269	2.11e-132	375

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450920	AT1G06680.1	74.717	265	61	2	1	261	1	263	3.81e-140	394
Msa0450920	AT1G06680.2	83.333	180	30	0	82	261	40	219	5.08e-110	317
Msa0450920	AT2G30790.1	80.000	125	25	0	137	261	1	125	3.58e-70	212

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Find 89 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTAAGAACTTTGGTGAA+GGG	0.554191	3_3:+37434429	Msa0450920:exon
AAATTACCTCTGAATCAGTT+TGG	0.412596	3_3:-37433796	None:intergenic
AAATTAGCTTGTGCATGATG+CGG	0.702379	3_3:-37434756	None:intergenic
AACAATATGGTTTGGTTTGT+TGG	0.330765	3_3:-37432054	None:intergenic
AACTGTTGGTTCCAGCAAAG+TGG	0.546443	3_3:+37433013	Msa0450920:CDS
AAGGATATGTCTCCGGCTCT+TGG	0.458419	3_3:+37434639	Msa0450920:three_prime_UTR
AATGAATGAGACTGAGAGTA+GGG	0.461426	3_3:-37431903	None:intergenic
ACCAAACCATATTGTTTGCA+AGG	0.544470	3_3:+37432061	Msa0450920:CDS
ACCTGAGGAGTTCCTATCTA+AGG	0.292484	3_3:+37433161	Msa0450920:CDS
ACCTTAGATAGGAACTCCTC+AGG	0.540944	3_3:-37433162	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGATTGCATTTGTGATGT+GGG	-	chr3_3:37431775-37431794	None:intergenic	30.0%
ATTTGATTGCATTTGTGATG+TGG	-	chr3_3:37431776-37431795	None:intergenic	30.0%
TTTGGATATTGGATTTGAAG+TGG	-	chr3_3:37431811-37431830	None:intergenic	30.0%
TATACTAGACTCTAGCAAAA+TGG	+	chr3_3:37431953-37431972	Msa0450920:exon	30.0%
CATTATATAACTGACGTATC+TGG	-	chr3_3:37432336-37432355	None:intergenic	30.0%
ACCATTGTATGAAGATTAGA+CGG	+	chr3_3:37432479-37432498	Msa0450920:intron	30.0%
TCAAATGAAAACTAGTGGTT+TGG	+	chr3_3:37432826-37432845	Msa0450920:intron	30.0%
CAAATTTCTAAATTCGTCAC+TGG	+	chr3_3:37433478-37433497	Msa0450920:intron	30.0%
CAAATAAGATTACCACCAAT+AGG	+	chr3_3:37433508-37433527	Msa0450920:intron	30.0%
GAAAATGCCTTTGAACTTTA+AGG	+	chr3_3:37433685-37433704	Msa0450920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	37431752	37434810	37431752	ID=Msa0450920;Name=Msa0450920
chr3_3	mRNA	37431752	37434810	37431752	ID=Msa0450920-mRNA-1;Parent=Msa0450920;Name=Msa0450920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=220\|1\|1\|1\|0.75\|0.6\|5\|318\|261
chr3_3	exon	37431752	37432212	37431752	ID=Msa0450920-mRNA-1:exon:6792;Parent=Msa0450920-mRNA-1
chr3_3	exon	37432950	37433182	37432950	ID=Msa0450920-mRNA-1:exon:6793;Parent=Msa0450920-mRNA-1
chr3_3	exon	37433761	37433811	37433761	ID=Msa0450920-mRNA-1:exon:6794;Parent=Msa0450920-mRNA-1
chr3_3	exon	37434170	37434672	37434170	ID=Msa0450920-mRNA-1:exon:6795;Parent=Msa0450920-mRNA-1
chr3_3	exon	37434735	37434810	37434735	ID=Msa0450920-mRNA-1:exon:6796;Parent=Msa0450920-mRNA-1
chr3_3	five_prime_UTR	37431752	37431971	37431752	ID=Msa0450920-mRNA-1:five_prime_utr;Parent=Msa0450920-mRNA-1
chr3_3	CDS	37431972	37432212	37431972	ID=Msa0450920-mRNA-1:cds;Parent=Msa0450920-mRNA-1
chr3_3	CDS	37432950	37433182	37432950	ID=Msa0450920-mRNA-1:cds;Parent=Msa0450920-mRNA-1
chr3_3	CDS	37433761	37433811	37433761	ID=Msa0450920-mRNA-1:cds;Parent=Msa0450920-mRNA-1
chr3_3	CDS	37434170	37434430	37434170	ID=Msa0450920-mRNA-1:cds;Parent=Msa0450920-mRNA-1
chr3_3	three_prime_UTR	37434431	37434672	37434431	ID=Msa0450920-mRNA-1:three_prime_utr;Parent=Msa0450920-mRNA-1
chr3_3	three_prime_UTR	37434735	37434810	37434735	ID=Msa0450920-mRNA-1:three_prime_utr;Parent=Msa0450920-mRNA-1

Gene Sequence

>Msa0450920

ATGGCCTCTACACAATGCTTCTTGCACCCCCAATATGCTCTTACAACTCCATCTAGAAGTTTGTCTCAACGCCAAATTGTTACCAACAAACCAAACCATATTGTTTGCAAGGCACAGAAACAAGATGTTGAGGATGTTGCTGTCAGTGTTGTTTCTCGTAGGTTAGCACTTTCTGTACTCCTTGGTGCTGCTGCTGTTGGCTCAAAGGTTTCACCTGCTGATGCTGCCTATGGAGAAGCTGCCAATGTCTTTGGAAAGGCAAAGACAAACACAGACTTTTTGCCATACAATGGAGATGGATTCAAACTGTTGGTTCCAGCAAAGTGGAATCCAAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGATACGAGGATAATTTTGATGCAACAAGCAATGTTTCCGTTCTTGTCCAAACAACTGACAAAAAGAACATCACCGACTATGGTTCACCTGAGGAGTTCCTATCTAAGGTGGACTATTTGCTTGGAAAACAAGCCTTCTTTGGCCAAACTGATTCAGAGGGTGGTTTTGATACAAATGCCGTAGCTGTGGCAAACATCTTAGAGAGTTCAGCACCAGTGATTGGTGGGAAACAGTATTACAACATATCAGTTTTGACAAGGACTGCTGATGGAGATGAAGGTGGAAAGCACCAGCTGATTACAGCAACTGTAAATGATGGAAAGCTATACATTTGCAAGGCTCAAGCTGGAGACAAGAGGTGGTTTAAGGGAGCAAGAAAGTTTGTTGAGGACACTGCAAGTTCTTTCAGTGTTGCTTAA

Protein sequence

>Msa0450920

MASTQCFLHPQYALTTPSRSLSQRQIVTNKPNHIVCKAQKQDVEDVAVSVVSRRLALSVLLGAAAVGSKVSPADAAYGEAANVFGKAKTNTDFLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKNITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA*