AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076590 MtrunA17_Chr1g0185571 98.254 401 7 0 1 401 1 401 0.0 808
Msa0076590 MtrunA17_Chr7g0271591 35.561 374 216 9 36 392 6 371 1.15e-60 201
Msa0076590 MtrunA17_Chr1g0211441 50.476 105 28 4 277 375 1 87 6.51e-21 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076590 AT3G63140.1 81.739 345 63 0 55 399 60 404 0.0 594
Msa0076590 AT1G09340.1 35.244 349 212 6 51 392 30 371 3.13e-59 197
Msa0076590 AT1G09340.2 35.569 343 207 6 57 392 37 372 2.86e-58 195

Find 108 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTCCAATAGCTTT+TGG 0.225530 1_2:+52752899 None:intergenic
AATAAGTGGTTAGCTTTATC+TGG 0.228976 1_2:-52754629 Msa0076590:five_prime_UTR
TAGAGCAGCCAAAAGTAAAT+TGG 0.234159 1_2:-52752484 Msa0076590:CDS
TACTTTGCAAAAGAGCTTCT+TGG 0.252518 1_2:-52754300 Msa0076590:CDS
GGAAGCATTTGATGTGGTTT+TGG 0.277672 1_2:-52753919 Msa0076590:CDS
TTGACAGTTGGGCAGTATTC+AGG 0.282729 1_2:-52753328 Msa0076590:CDS
GACCGTGCAGTGACTCTAAA+TGG 0.294016 1_2:-52752980 Msa0076590:CDS
TTAACTGAGAATCTGTTAAA+AGG 0.304463 1_2:+52754213 None:intergenic
TCATAATGCACAATATTAAC+AGG 0.306642 1_2:+52752923 None:intergenic
ACTCCATCCCAATTTACTTT+TGG 0.315805 1_2:+52752476 None:intergenic
TGCCATTTGTAGGGATTGTT+CGG 0.321985 1_2:-52753138 Msa0076590:intron
CATTATGATCCAAAAGCTAT+TGG 0.327599 1_2:-52752908 Msa0076590:CDS
CTTGTAGGCCGGTGATTGAT+TGG 0.337830 1_2:-52753583 Msa0076590:intron
GTGCTGGAGGCAGTACAGTA+TGG 0.353532 1_2:-52753977 Msa0076590:CDS
TCATCTAGCTCAAATTTGAT+TGG 0.372467 1_2:+52752381 None:intergenic
GACAGACCTGTGCTAATTCC+TGG 0.376564 1_2:-52753115 Msa0076590:CDS
TTTGAGGAGTACATAAAGAT+TGG 0.382185 1_2:-52752417 Msa0076590:CDS
CACAGCATGTCCACCACTAT+TGG 0.391544 1_2:+52754332 None:intergenic
AGATTGATAGAGAGGAGGAT+TGG 0.398549 1_2:+52754466 None:intergenic
GCCATTTGTAGGGATTGTTC+GGG 0.401187 1_2:-52753137 Msa0076590:intron
CCTGTGCTAATTCCTGGTTC+AGG 0.406137 1_2:-52753109 Msa0076590:CDS
TTCAGGCCACAGTATATGAT+AGG 0.407167 1_2:-52753311 Msa0076590:CDS
ATGCTATGATTTGCAGCATC+CGG 0.413288 1_2:+52753019 None:intergenic
GCAAAAGAGCTTCTTGGTGC+TGG 0.417862 1_2:-52754294 Msa0076590:CDS
TAAAGAAGGGTGTGATAGAA+AGG 0.420821 1_2:+52754437 None:intergenic
ATGTGAAAGTGGGAGGAGAT+TGG 0.423665 1_2:+52754524 None:intergenic
GGTAGAGGAGATTGATAGAG+AGG 0.430909 1_2:+52754458 None:intergenic
TTGCTTAGCACCAGCACTCT+TGG 0.432659 1_2:+52753559 None:intergenic
TTCTTGTTCATCAGTAGTGC+TGG 0.442792 1_2:-52753536 Msa0076590:CDS
CCACAGTATATGATAGGGTC+TGG 0.453744 1_2:-52753305 Msa0076590:CDS
TTAGCTTTATCTGGAACTGC+TGG 0.456770 1_2:-52754620 Msa0076590:five_prime_UTR
TTGTAGGCCGGTGATTGATT+GGG 0.458275 1_2:-52753582 Msa0076590:intron
TGCTGGAGGCAGTACAGTAT+GGG 0.461255 1_2:-52753976 Msa0076590:CDS
GACAGGCACTGGAACTTTCA+AGG 0.461589 1_2:+52752344 None:intergenic
AGAGCAGCCAAAAGTAAATT+GGG 0.463206 1_2:-52752483 Msa0076590:CDS
GCAGATGTAGGGAGTGTTGT+AGG 0.465644 1_2:-52753945 Msa0076590:CDS
AAACGTTTAGAAGTTAAAGA+AGG 0.468448 1_2:+52754423 None:intergenic
AGGGTGTGATAGAAAGGTAG+AGG 0.470337 1_2:+52754443 None:intergenic
TTGAGGAGTACATAAAGATT+GGG 0.473490 1_2:-52752416 Msa0076590:CDS
TTCATCACCAACAGTGAGAA+TGG 0.478740 1_2:+52754260 None:intergenic
ATTCAGGAAATTGTGAGTGC+TGG 0.482366 1_2:-52753993 Msa0076590:intron
TGTAGGGAGTGTTGTAGGAG+GGG 0.485069 1_2:-52753940 Msa0076590:CDS
AAACTATGCGCTCAAGCTGC+AGG 0.488216 1_2:-52752950 Msa0076590:CDS
CTTGTTACATGATTTAAATG+AGG 0.488668 1_2:-52752270 Msa0076590:three_prime_UTR
TTTACATACCCCTTCAACAT+GGG 0.493986 1_2:+52753487 None:intergenic
TGCTATGATTTGCAGCATCC+GGG 0.495889 1_2:+52753020 None:intergenic
TAGGTCTTCAGGTAGGTTTG+TGG 0.496981 1_2:+52752449 None:intergenic
GATGAACCTCCCCATGTTGA+AGG 0.498721 1_2:-52753497 Msa0076590:CDS
CTAATCATAAATACCAATAG+TGG 0.505445 1_2:-52754345 Msa0076590:CDS
ATTGATTGGGCCAAGAGTGC+TGG 0.505534 1_2:-52753569 Msa0076590:CDS
TATTAGTAACTACCACATTA+CGG 0.509809 1_2:+52752858 None:intergenic
TGGGGAAATCCTGCAGATGT+AGG 0.509975 1_2:-52753957 Msa0076590:CDS
TGGACATGAATGGATTAGAC+AGG 0.510269 1_2:+52752327 None:intergenic
AAGTGGGAGGAGATTGGAAG+AGG 0.510845 1_2:+52754530 None:intergenic
ATGTAGGGAGTGTTGTAGGA+GGG 0.512919 1_2:-52753941 Msa0076590:CDS
GACTCTAGCTGTTGAGAACC+CGG 0.519383 1_2:-52753038 Msa0076590:CDS
TAACTACCACATTACGGAAA+GGG 0.523101 1_2:+52752864 None:intergenic
CTCATACTCTTTAGCAACAA+TGG 0.525250 1_2:-52754595 Msa0076590:exon
AAAGTTGAAGAATGTGAAAG+TGG 0.526768 1_2:+52754513 None:intergenic
TGAATGGATTAGACAGGCAC+TGG 0.530414 1_2:+52752333 None:intergenic
AGTGGTGGACATGCTGTGAT+TGG 0.532273 1_2:-52754327 Msa0076590:CDS
GATGTAGGGAGTGTTGTAGG+AGG 0.533905 1_2:-52753942 Msa0076590:CDS
CATACTGTGGGAAATGAGAA+AGG 0.536601 1_2:-52754657 None:intergenic
AGAGGAGATTGATAGAGAGG+AGG 0.537025 1_2:+52754461 None:intergenic
AGCCTTCCCTTTCCGTAATG+TGG 0.539160 1_2:-52752870 Msa0076590:intron
AGACCTAAAAGAACGGTTTG+AGG 0.542890 1_2:-52752433 Msa0076590:CDS
TCTGTCACCATTCTCACTGT+TGG 0.546638 1_2:-52754267 Msa0076590:CDS
ACAACACTCCCTACATCTGC+AGG 0.549124 1_2:+52753948 None:intergenic
ATGAACCTCCCCATGTTGAA+GGG 0.549367 1_2:-52753496 Msa0076590:CDS
GATGCTGTCAAAGCAGATGC+TGG 0.549933 1_2:-52753386 Msa0076590:CDS
AGGTGAAGAGGAAGCAAGCA+TGG 0.550927 1_2:+52754572 None:intergenic
GTTGCAGTGAAGAGCAAGGT+AGG 0.557688 1_2:+52754552 None:intergenic
GGGGAAATCCTGCAGATGTA+GGG 0.557910 1_2:-52753956 Msa0076590:CDS
AACGTTTAGAAGTTAAAGAA+GGG 0.558877 1_2:+52754424 None:intergenic
GAAGAGCAAGGTAGGTGAAG+AGG 0.559392 1_2:+52754560 None:intergenic
ATCATAAATACCAATAGTGG+TGG 0.568756 1_2:-52754342 Msa0076590:CDS
CAGGAAATTGTGAGTGCTGG+AGG 0.569688 1_2:-52753990 Msa0076590:CDS
CAACAATGGCAAGGATCTTG+AGG 0.570058 1_2:-52753895 Msa0076590:CDS
TGAGAAAGGAAGCAAATAAG+TGG 0.577103 1_2:-52754643 Msa0076590:five_prime_UTR
AAAGCAGATGCTGGTCATGT+TGG 0.578448 1_2:-52753377 Msa0076590:CDS
AAGTGCTGCAGAGAAGAAGA+AGG 0.579004 1_2:-52754370 Msa0076590:CDS
GTGAGTTGCAATCCTGAACC+AGG 0.583215 1_2:+52753097 None:intergenic
TTGAAGAATGTGAAAGTGGG+AGG 0.586781 1_2:+52754517 None:intergenic
ACTGAGAATCTGTTAAAAGG+AGG 0.587402 1_2:+52754216 None:intergenic
TGAAGACAAGTCTTTAACAT+GGG 0.589247 1_2:+52753066 None:intergenic
CAGCCAAAAGTAAATTGGGA+TGG 0.590712 1_2:-52752479 Msa0076590:CDS
AGGAGGGGAAGCATTTGATG+TGG 0.594670 1_2:-52753925 Msa0076590:CDS
TTACATACCCCTTCAACATG+GGG 0.600415 1_2:+52753488 None:intergenic
CTCTTGGCCCAATCAATCAC+CGG 0.609443 1_2:+52753575 None:intergenic
TCAGGCCACAGTATATGATA+GGG 0.612425 1_2:-52753310 Msa0076590:CDS
GTAACTACCACATTACGGAA+AGG 0.618845 1_2:+52752863 None:intergenic
CCTGAACCAGGAATTAGCAC+AGG 0.620301 1_2:+52753109 None:intergenic
CATACCCCTTCAACATGGGG+AGG 0.623130 1_2:+52753491 None:intergenic
ACAACAAAGATTGCGAGGAG+TGG 0.624292 1_2:-52753280 Msa0076590:CDS
AGAGGTTGCAGTGAAGAGCA+AGG 0.629204 1_2:+52754548 None:intergenic
TGAACCTCCCCATGTTGAAG+GGG 0.630399 1_2:-52753495 Msa0076590:intron
TTGAAGACAAGTCTTTAACA+TGG 0.635676 1_2:+52753065 None:intergenic
AAGTTGAAGAATGTGAAAGT+GGG 0.645935 1_2:+52754514 None:intergenic
TTCCATTTAGAGTCACTGCA+CGG 0.647510 1_2:+52752978 None:intergenic
TACCTGAAGACCTAAAAGAA+CGG 0.651559 1_2:-52752440 Msa0076590:CDS
GCAAGGATCTTGAGGCTGTG+AGG 0.652778 1_2:-52753887 Msa0076590:intron
GCTGGAGGCAGTACAGTATG+GGG 0.653422 1_2:-52753975 Msa0076590:CDS
TGGAAACAACAAAGATTGCG+AGG 0.654997 1_2:-52753285 Msa0076590:CDS
GCTAGATGATAAGATACTAG+AGG 0.656094 1_2:-52752367 Msa0076590:CDS
CATAATGCACAATATTAACA+GGG 0.661428 1_2:+52752924 None:intergenic
TACCACATTACGGAAAGGGA+AGG 0.661601 1_2:+52752868 None:intergenic
CAGTGAGAATGGTGACAGAG+TGG 0.686600 1_2:+52754271 None:intergenic
CCAGACCCTATCATATACTG+TGG 0.716866 1_2:+52753305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTGAATTTGAAAAATATTC+AGG - chr1_2:52752842-52752861 Msa0076590:intron 20.0%
! AACGTTTAGAAGTTAAAGAA+GGG + chr1_2:52752430-52752449 None:intergenic 25.0%
! AAACGTTTAGAAGTTAAAGA+AGG + chr1_2:52752431-52752450 None:intergenic 25.0%
! CTAATCATAAATACCAATAG+TGG - chr1_2:52752506-52752525 Msa0076590:intron 25.0%
! TTAACTGAGAATCTGTTAAA+AGG + chr1_2:52752641-52752660 None:intergenic 25.0%
! CATGAAAAGAACAATTCTTT+CGG + chr1_2:52752692-52752711 None:intergenic 25.0%
! CAATCATCGTTATTATATCA+AGG - chr1_2:52752808-52752827 Msa0076590:intron 25.0%
! TACAAGTTAAGATCAAGATT+AGG + chr1_2:52753254-52753273 None:intergenic 25.0%
!!! TAATCTTGATCTTAACTTGT+AGG - chr1_2:52753253-52753272 Msa0076590:intron 25.0%
! AATAACTGTTATCAGCAAAA+TGG + chr1_2:52753415-52753434 None:intergenic 25.0%
! AATCTAAAGATGAAAATCAC+TGG - chr1_2:52753437-52753456 Msa0076590:intron 25.0%
!! AAAAGCTTCATATGGATTAA+AGG + chr1_2:52753641-52753660 None:intergenic 25.0%
! GAGTAAAAAAAAGCTTCATA+TGG + chr1_2:52753649-52753668 None:intergenic 25.0%
!! AAATGTATATTGCCATTTGT+AGG - chr1_2:52753703-52753722 Msa0076590:intron 25.0%
!! AATGTATATTGCCATTTGTA+GGG - chr1_2:52753704-52753723 Msa0076590:intron 25.0%
! CATAATGCACAATATTAACA+GGG + chr1_2:52753930-52753949 None:intergenic 25.0%
! TCATAATGCACAATATTAAC+AGG + chr1_2:52753931-52753950 None:intergenic 25.0%
! TATTAGTAACTACCACATTA+CGG + chr1_2:52753996-52754015 None:intergenic 25.0%
! TGTATCATAGATTAGAACAT+AGG + chr1_2:52754020-52754039 None:intergenic 25.0%
!! TTTTACATTTTGGACATGAA+TGG + chr1_2:52754537-52754556 None:intergenic 25.0%
!! TGTCTGATCATTTTACATTT+TGG + chr1_2:52754547-52754566 None:intergenic 25.0%
! CTTGTTACATGATTTAAATG+AGG - chr1_2:52754581-52754600 Msa0076590:exon 25.0%
!! AATAAGTGGTTAGCTTTATC+TGG - chr1_2:52752222-52752241 Msa0076590:three_prime_UTR 30.0%
AAGTTGAAGAATGTGAAAGT+GGG + chr1_2:52752340-52752359 None:intergenic 30.0%
AAAGTTGAAGAATGTGAAAG+TGG + chr1_2:52752341-52752360 None:intergenic 30.0%
ATCATAAATACCAATAGTGG+TGG - chr1_2:52752509-52752528 Msa0076590:intron 30.0%
AACCTGTTGAGTTAATATGA+AGG + chr1_2:52753044-52753063 None:intergenic 30.0%
! TTGAAGAAACTTTTGACAGT+TGG - chr1_2:52753511-52753530 Msa0076590:CDS 30.0%
! TGAAGAAACTTTTGACAGTT+GGG - chr1_2:52753512-52753531 Msa0076590:CDS 30.0%
TGAAGACAAGTCTTTAACAT+GGG + chr1_2:52753788-52753807 None:intergenic 30.0%
TTGAAGACAAGTCTTTAACA+TGG + chr1_2:52753789-52753808 None:intergenic 30.0%
CATTATGATCCAAAAGCTAT+TGG - chr1_2:52753943-52753962 Msa0076590:CDS 30.0%
AGATAATCGATACTCTCTAT+TGG + chr1_2:52754069-52754088 None:intergenic 30.0%
!! ATAGAGAGTATCGATTATCT+TGG - chr1_2:52754069-52754088 Msa0076590:intron 30.0%
! CTGTTACAGTTCAATACTTT+TGG + chr1_2:52754099-52754118 None:intergenic 30.0%
! TTTGAGGAGTACATAAAGAT+TGG - chr1_2:52754434-52754453 Msa0076590:CDS 30.0%
! TTGAGGAGTACATAAAGATT+GGG - chr1_2:52754435-52754454 Msa0076590:CDS 30.0%
! TCATCTAGCTCAAATTTGAT+TGG + chr1_2:52754473-52754492 None:intergenic 30.0%
TGAGAAAGGAAGCAAATAAG+TGG - chr1_2:52752208-52752227 Msa0076590:three_prime_UTR 35.0%
CTCATACTCTTTAGCAACAA+TGG - chr1_2:52752256-52752275 Msa0076590:three_prime_UTR 35.0%
! TAAAGAAGGGTGTGATAGAA+AGG + chr1_2:52752417-52752436 None:intergenic 35.0%
TACTTTGCAAAAGAGCTTCT+TGG - chr1_2:52752551-52752570 Msa0076590:intron 35.0%
ACTGAGAATCTGTTAAAAGG+AGG + chr1_2:52752638-52752657 None:intergenic 35.0%
TGCCTTCATATTAACTCAAC+AGG - chr1_2:52753039-52753058 Msa0076590:CDS 35.0%
CTATTCTAATATATGCAGCC+AGG - chr1_2:52753207-52753226 Msa0076590:intron 35.0%
TCTTTCTTAAAGACTGTACC+TGG + chr1_2:52753228-52753247 None:intergenic 35.0%
TTTACATACCCCTTCAACAT+GGG + chr1_2:52753367-52753386 None:intergenic 35.0%
! TTTTACATACCCCTTCAACA+TGG + chr1_2:52753368-52753387 None:intergenic 35.0%
GGTTCTTGAAATGCTGTATT+AGG + chr1_2:52753394-52753413 None:intergenic 35.0%
! GCATCAATTCCAATAGCTTT+TGG + chr1_2:52753955-52753974 None:intergenic 35.0%
TAACTACCACATTACGGAAA+GGG + chr1_2:52753990-52754009 None:intergenic 35.0%
ATCATTTATGTCTCAACCGA+GGG - chr1_2:52754238-52754257 Msa0076590:CDS 35.0%
!! AATTTACTTTTGGCTGCTCT+AGG + chr1_2:52754368-52754387 None:intergenic 35.0%
TAGAGCAGCCAAAAGTAAAT+TGG - chr1_2:52754367-52754386 Msa0076590:CDS 35.0%
AGAGCAGCCAAAAGTAAATT+GGG - chr1_2:52754368-52754387 Msa0076590:CDS 35.0%
! ACTCCATCCCAATTTACTTT+TGG + chr1_2:52754378-52754397 None:intergenic 35.0%
TACCTGAAGACCTAAAAGAA+CGG - chr1_2:52754411-52754430 Msa0076590:CDS 35.0%
GCTAGATGATAAGATACTAG+AGG - chr1_2:52754484-52754503 Msa0076590:CDS 35.0%
!! TTAGCTTTATCTGGAACTGC+TGG - chr1_2:52752231-52752250 Msa0076590:three_prime_UTR 40.0%
TTGAAGAATGTGAAAGTGGG+AGG + chr1_2:52752337-52752356 None:intergenic 40.0%
AGATTGATAGAGAGGAGGAT+TGG + chr1_2:52752388-52752407 None:intergenic 40.0%
TTCATCACCAACAGTGAGAA+TGG + chr1_2:52752594-52752613 None:intergenic 40.0%
AGCACTAGCTAAATGCAGAA+AGG + chr1_2:52752746-52752765 None:intergenic 40.0%
ATTCAGGAAATTGTGAGTGC+TGG - chr1_2:52752858-52752877 Msa0076590:intron 40.0%
!!! GGAAGCATTTGATGTGGTTT+TGG - chr1_2:52752932-52752951 Msa0076590:CDS 40.0%
!!! GATGTGGTTTTGGACAACAA+TGG - chr1_2:52752942-52752961 Msa0076590:CDS 40.0%
!! CGTAGACTTGTTAGTTGTCT+CGG - chr1_2:52753113-52753132 Msa0076590:CDS 40.0%
!! CTTGATCTTAACTTGTAGGC+CGG - chr1_2:52753257-52753276 Msa0076590:intron 40.0%
TTCTTGTTCATCAGTAGTGC+TGG - chr1_2:52753315-52753334 Msa0076590:CDS 40.0%
TTACATACCCCTTCAACATG+GGG + chr1_2:52753366-52753385 None:intergenic 40.0%
AAGATGAAAATCACTGGAGC+AGG - chr1_2:52753443-52753462 Msa0076590:intron 40.0%
TTCAGGCCACAGTATATGAT+AGG - chr1_2:52753540-52753559 Msa0076590:CDS 40.0%
TCAGGCCACAGTATATGATA+GGG - chr1_2:52753541-52753560 Msa0076590:CDS 40.0%
TGGAAACAACAAAGATTGCG+AGG - chr1_2:52753566-52753585 Msa0076590:CDS 40.0%
AGTGGTTCTTTGACAGTAAG+TGG - chr1_2:52753589-52753608 Msa0076590:intron 40.0%
GTGGTTCTTTGACAGTAAGT+GGG - chr1_2:52753590-52753609 Msa0076590:intron 40.0%
! TGCCATTTGTAGGGATTGTT+CGG - chr1_2:52753713-52753732 Msa0076590:intron 40.0%
! ATGCTATGATTTGCAGCATC+CGG + chr1_2:52753835-52753854 None:intergenic 40.0%
! TTCCATTTAGAGTCACTGCA+CGG + chr1_2:52753876-52753895 None:intergenic 40.0%
GTAACTACCACATTACGGAA+AGG + chr1_2:52753991-52754010 None:intergenic 40.0%
CATCATTTATGTCTCAACCG+AGG - chr1_2:52754237-52754256 Msa0076590:CDS 40.0%
CAGCCAAAAGTAAATTGGGA+TGG - chr1_2:52754372-52754391 Msa0076590:CDS 40.0%
!! GTTCTTTTAGGTCTTCAGGT+AGG + chr1_2:52754412-52754431 None:intergenic 40.0%
!! AACCGTTCTTTTAGGTCTTC+AGG + chr1_2:52754416-52754435 None:intergenic 40.0%
AGACCTAAAAGAACGGTTTG+AGG - chr1_2:52754418-52754437 Msa0076590:CDS 40.0%
! ACTCCTCAAACCGTTCTTTT+AGG + chr1_2:52754424-52754443 None:intergenic 40.0%
!! TGGACATGAATGGATTAGAC+AGG + chr1_2:52754527-52754546 None:intergenic 40.0%
ATGTGAAAGTGGGAGGAGAT+TGG + chr1_2:52752330-52752349 None:intergenic 45.0%
AGAGGAGATTGATAGAGAGG+AGG + chr1_2:52752393-52752412 None:intergenic 45.0%
GGTAGAGGAGATTGATAGAG+AGG + chr1_2:52752396-52752415 None:intergenic 45.0%
AGGGTGTGATAGAAAGGTAG+AGG + chr1_2:52752411-52752430 None:intergenic 45.0%
! AAGTGCTGCAGAGAAGAAGA+AGG - chr1_2:52752481-52752500 Msa0076590:CDS 45.0%
TCTGTCACCATTCTCACTGT+TGG - chr1_2:52752584-52752603 Msa0076590:intron 45.0%
!! ATGTAGGGAGTGTTGTAGGA+GGG - chr1_2:52752910-52752929 Msa0076590:CDS 45.0%
!!! GGTTTTGGACAACAATGGCA+AGG - chr1_2:52752947-52752966 Msa0076590:CDS 45.0%
CAACAATGGCAAGGATCTTG+AGG - chr1_2:52752956-52752975 Msa0076590:CDS 45.0%
TTGTAGGCCGGTGATTGATT+GGG - chr1_2:52753269-52753288 Msa0076590:intron 45.0%
ATGAACCTCCCCATGTTGAA+GGG - chr1_2:52753355-52753374 Msa0076590:CDS 45.0%
AAAGCAGATGCTGGTCATGT+TGG - chr1_2:52753474-52753493 Msa0076590:intron 45.0%
TTGACAGTTGGGCAGTATTC+AGG - chr1_2:52753523-52753542 Msa0076590:CDS 45.0%
CCAGACCCTATCATATACTG+TGG + chr1_2:52753549-52753568 None:intergenic 45.0%
CCACAGTATATGATAGGGTC+TGG - chr1_2:52753546-52753565 Msa0076590:CDS 45.0%
ACAACAAAGATTGCGAGGAG+TGG - chr1_2:52753571-52753590 Msa0076590:CDS 45.0%
GCCATTTGTAGGGATTGTTC+GGG - chr1_2:52753714-52753733 Msa0076590:intron 45.0%
TCCCGAACAATCCCTACAAA+TGG + chr1_2:52753718-52753737 None:intergenic 45.0%
! TGCTATGATTTGCAGCATCC+GGG + chr1_2:52753834-52753853 None:intergenic 45.0%
TACCACATTACGGAAAGGGA+AGG + chr1_2:52753986-52754005 None:intergenic 45.0%
GATCACAAAGCTGATCAGCA+AGG + chr1_2:52754149-52754168 None:intergenic 45.0%
TAGGTCTTCAGGTAGGTTTG+TGG + chr1_2:52754405-52754424 None:intergenic 45.0%
!! TGAATGGATTAGACAGGCAC+TGG + chr1_2:52754521-52754540 None:intergenic 45.0%
AGGTGAAGAGGAAGCAAGCA+TGG + chr1_2:52752282-52752301 None:intergenic 50.0%
GAAGAGCAAGGTAGGTGAAG+AGG + chr1_2:52752294-52752313 None:intergenic 50.0%
GTTGCAGTGAAGAGCAAGGT+AGG + chr1_2:52752302-52752321 None:intergenic 50.0%
AGAGGTTGCAGTGAAGAGCA+AGG + chr1_2:52752306-52752325 None:intergenic 50.0%
AAGTGGGAGGAGATTGGAAG+AGG + chr1_2:52752324-52752343 None:intergenic 50.0%
CACAGCATGTCCACCACTAT+TGG + chr1_2:52752522-52752541 None:intergenic 50.0%
!! AGTGGTGGACATGCTGTGAT+TGG - chr1_2:52752524-52752543 Msa0076590:intron 50.0%
! GCAAAAGAGCTTCTTGGTGC+TGG - chr1_2:52752557-52752576 Msa0076590:intron 50.0%
CAGTGAGAATGGTGACAGAG+TGG + chr1_2:52752583-52752602 None:intergenic 50.0%
!! CAGGAAATTGTGAGTGCTGG+AGG - chr1_2:52752861-52752880 Msa0076590:intron 50.0%
TGCTGGAGGCAGTACAGTAT+GGG - chr1_2:52752875-52752894 Msa0076590:CDS 50.0%
TGGGGAAATCCTGCAGATGT+AGG - chr1_2:52752894-52752913 Msa0076590:CDS 50.0%
GGGGAAATCCTGCAGATGTA+GGG - chr1_2:52752895-52752914 Msa0076590:CDS 50.0%
ACAACACTCCCTACATCTGC+AGG + chr1_2:52752906-52752925 None:intergenic 50.0%
!! GCAGATGTAGGGAGTGTTGT+AGG - chr1_2:52752906-52752925 Msa0076590:CDS 50.0%
!! GATGTAGGGAGTGTTGTAGG+AGG - chr1_2:52752909-52752928 Msa0076590:CDS 50.0%
!! TGTAGGGAGTGTTGTAGGAG+GGG - chr1_2:52752911-52752930 Msa0076590:CDS 50.0%
!! AGGAGGGGAAGCATTTGATG+TGG - chr1_2:52752926-52752945 Msa0076590:CDS 50.0%
CTTGTAGGCCGGTGATTGAT+TGG - chr1_2:52753268-52753287 Msa0076590:intron 50.0%
CTCTTGGCCCAATCAATCAC+CGG + chr1_2:52753279-52753298 None:intergenic 50.0%
! ATTGATTGGGCCAAGAGTGC+TGG - chr1_2:52753282-52753301 Msa0076590:CDS 50.0%
TTGCTTAGCACCAGCACTCT+TGG + chr1_2:52753295-52753314 None:intergenic 50.0%
GATGAACCTCCCCATGTTGA+AGG - chr1_2:52753354-52753373 Msa0076590:CDS 50.0%
TGAACCTCCCCATGTTGAAG+GGG - chr1_2:52753356-52753375 Msa0076590:CDS 50.0%
GATGCTGTCAAAGCAGATGC+TGG - chr1_2:52753465-52753484 Msa0076590:intron 50.0%
GACAGACCTGTGCTAATTCC+TGG - chr1_2:52753736-52753755 Msa0076590:intron 50.0%
CCTGAACCAGGAATTAGCAC+AGG + chr1_2:52753745-52753764 None:intergenic 50.0%
CCTGTGCTAATTCCTGGTTC+AGG - chr1_2:52753742-52753761 Msa0076590:intron 50.0%
GTGAGTTGCAATCCTGAACC+AGG + chr1_2:52753757-52753776 None:intergenic 50.0%
GACTCTAGCTGTTGAGAACC+CGG - chr1_2:52753813-52753832 Msa0076590:intron 50.0%
GACCGTGCAGTGACTCTAAA+TGG - chr1_2:52753871-52753890 Msa0076590:intron 50.0%
AAACTATGCGCTCAAGCTGC+AGG - chr1_2:52753901-52753920 Msa0076590:CDS 50.0%
AGCCTTCCCTTTCCGTAATG+TGG - chr1_2:52753981-52754000 Msa0076590:CDS 50.0%
TCCATGATGCAGAGTTCCCT+CGG + chr1_2:52754257-52754276 None:intergenic 50.0%
!! GACAGGCACTGGAACTTTCA+AGG + chr1_2:52754510-52754529 None:intergenic 50.0%
GTGCTGGAGGCAGTACAGTA+TGG - chr1_2:52752874-52752893 Msa0076590:CDS 55.0%
GCTGGAGGCAGTACAGTATG+GGG - chr1_2:52752876-52752895 Msa0076590:CDS 55.0%
GCAAGGATCTTGAGGCTGTG+AGG - chr1_2:52752964-52752983 Msa0076590:CDS 55.0%
CATACCCCTTCAACATGGGG+AGG + chr1_2:52753363-52753382 None:intergenic 55.0%
ACCGAGGGAACTCTGCATCA+TGG - chr1_2:52754253-52754272 Msa0076590:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 52752208 52754665 52752208 ID=Msa0076590;Name=Msa0076590
chr1_2 mRNA 52752208 52754665 52752208 ID=Msa0076590-mRNA-1;Parent=Msa0076590;Name=Msa0076590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=67|1|1|1|1|1|6|133|401
chr1_2 exon 52752208 52752523 52752208 ID=Msa0076590-mRNA-1:exon:16284;Parent=Msa0076590-mRNA-1
chr1_2 exon 52752871 52753148 52752871 ID=Msa0076590-mRNA-1:exon:16283;Parent=Msa0076590-mRNA-1
chr1_2 exon 52753270 52753408 52753270 ID=Msa0076590-mRNA-1:exon:16282;Parent=Msa0076590-mRNA-1
chr1_2 exon 52753496 52753598 52753496 ID=Msa0076590-mRNA-1:exon:16281;Parent=Msa0076590-mRNA-1
chr1_2 exon 52753888 52754009 52753888 ID=Msa0076590-mRNA-1:exon:16280;Parent=Msa0076590-mRNA-1
chr1_2 exon 52754218 52754665 52754218 ID=Msa0076590-mRNA-1:exon:16279;Parent=Msa0076590-mRNA-1
chr1_2 five_prime_UTR 52754599 52754665 52754599 ID=Msa0076590-mRNA-1:five_prime_utr;Parent=Msa0076590-mRNA-1
chr1_2 CDS 52754218 52754598 52754218 ID=Msa0076590-mRNA-1:cds;Parent=Msa0076590-mRNA-1
chr1_2 CDS 52753888 52754009 52753888 ID=Msa0076590-mRNA-1:cds;Parent=Msa0076590-mRNA-1
chr1_2 CDS 52753496 52753598 52753496 ID=Msa0076590-mRNA-1:cds;Parent=Msa0076590-mRNA-1
chr1_2 CDS 52753270 52753408 52753270 ID=Msa0076590-mRNA-1:cds;Parent=Msa0076590-mRNA-1
chr1_2 CDS 52752871 52753148 52752871 ID=Msa0076590-mRNA-1:cds;Parent=Msa0076590-mRNA-1
chr1_2 CDS 52752341 52752523 52752341 ID=Msa0076590-mRNA-1:cds;Parent=Msa0076590-mRNA-1
chr1_2 three_prime_UTR 52752208 52752340 52752208 ID=Msa0076590-mRNA-1:three_prime_utr;Parent=Msa0076590-mRNA-1
Gene Sequence

>Msa0076590

ATGGCCATGCTTGCTTCCTCTTCACCTACCTTGCTCTTCACTGCAACCTCTTCCAATCTCCTCCCACTTTCACATTCTTCAACTTTGCGTCTTTCTTTCTCTTCTTCACTCCAATCCTCCTCTCTATCAATCTCCTCTACCTTTCTATCACACCCTTCTTTAACTTCTAAACGTTTAGCTAATCATGCTACTTTAAGCATCAGTGCAAGTGCTGCAGAGAAGAAGAAGGTGCTAATCATAAATACCAATAGTGGTGGACATGCTGTGATTGGCTTCTACTTTGCAAAAGAGCTTCTTGGTGCTGGCCACTCTGTCACCATTCTCACTGTTGGTGATGAAAGCTCAGACAAGATGAAGAAACCTCCTTTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAGTACAGTATGGGGAAATCCTGCAGATGTAGGGAGTGTTGTAGGAGGGGAAGCATTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGGCTGTGAGGCCGGTGATTGATTGGGCCAAGAGTGCTGGTGCTAAGCAATTCTTGTTCATCAGTAGTGCTGGAATCTACAAAACGACAGATGAACCTCCCCATGTTGAAGGGGATGCTGTCAAAGCAGATGCTGGTCATGTTGGAGTTGAGAAATACATTGAAGAAACTTTTGACAGTTGGGCAGTATTCAGGCCACAGTATATGATAGGGTCTGGAAACAACAAAGATTGCGAGGAGTGGTTCTTTGACAGGATTGTTCGGGACAGACCTGTGCTAATTCCTGGTTCAGGATTGCAACTCACTAACATATCCCATGTTAAAGACTTGTCTTCAATGTTGACTCTAGCTGTTGAGAACCCGGATGCTGCAAATCATAGCATCTTCAACTGTGTGAGTGACCGTGCAGTGACTCTAAATGGAATAGCTAAACTATGCGCTCAAGCTGCAGGACGCCCTGTTAATATTGTGCATTATGATCCAAAAGCTATTGGAATTGATGCAAAGAAAGCCTTCCCTTTCCGTAATGTGCACTTCTATGCTGAACCTAGAGCAGCCAAAAGTAAATTGGGATGGAGTTCAACCACAAACCTACCTGAAGACCTAAAAGAACGGTTTGAGGAGTACATAAAGATTGGGAGAGACAAGAAGCCAATCAAATTTGAGCTAGATGATAAGATACTAGAGGCCTTGAAAGTTCCAGTGCCTGTCTAA

Protein sequence

>Msa0076590

MAMLASSSPTLLFTATSSNLLPLSHSSTLRLSFSSSLQSSSLSISSTFLSHPSLTSKRLANHATLSISASAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVTILTVGDESSDKMKKPPFNRFSEIVSAGGSTVWGNPADVGSVVGGEAFDVVLDNNGKDLEAVRPVIDWAKSAGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFDSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPDAANHSIFNCVSDRAVTLNGIAKLCAQAAGRPVNIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKSKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKVPVPV*