AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0329360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0329360 MtrunA17_Chr2g0311181 97.866 328 7 0 1 328 1 328 0.0 664
Msa0329360 MtrunA17_Chr3g0094341 97.354 189 5 0 51 239 13 201 7.62e-134 379
Msa0329360 MtrunA17_Chr2g0304101 39.662 237 138 2 69 300 69 305 1.35e-57 188
Msa0329360 MtrunA17_Chr5g0417641 36.546 249 149 3 60 301 48 294 6.10e-49 166
Msa0329360 MtrunA17_Chr7g0250261 31.923 260 161 7 51 299 25 279 2.33e-33 124
Msa0329360 MtrunA17_Chr0c29g0494001 31.923 260 161 7 51 299 25 279 2.33e-33 124
Msa0329360 MtrunA17_Chr5g0445491 26.639 244 161 6 70 296 227 469 1.50e-25 106
Msa0329360 MtrunA17_Chr4g0034981 28.077 260 173 7 69 316 345 602 3.80e-23 100
Msa0329360 MtrunA17_Chr2g0294671 29.464 224 146 5 87 303 268 486 1.23e-22 98.2
Msa0329360 MtrunA17_Chr6g0448821 28.426 197 134 2 87 277 139 334 1.65e-22 96.7
Msa0329360 MtrunA17_Chr6g0448821 26.263 198 123 6 65 255 161 342 2.54e-14 73.2
Msa0329360 MtrunA17_Chr4g0043941 26.966 178 121 2 129 300 145 319 7.76e-16 77.0
Msa0329360 MtrunA17_Chr5g0428941 21.739 276 169 5 75 304 213 487 2.35e-15 76.6
Msa0329360 MtrunA17_Chr1g0212691 23.373 338 166 12 75 326 145 475 5.63e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0329360 AT2G36000.1 55.985 259 110 3 70 324 74 332 1.54e-99 297
Msa0329360 AT2G36000.2 57.083 240 99 3 70 305 74 313 3.33e-94 283
Msa0329360 AT2G34620.1 40.000 240 139 2 69 303 55 294 5.21e-59 192
Msa0329360 AT2G03050.2 38.403 263 149 6 50 303 15 273 2.70e-53 177
Msa0329360 AT2G03050.1 38.403 263 149 6 50 303 14 272 3.12e-53 176
Msa0329360 AT3G18870.1 31.020 245 155 5 66 302 33 271 1.23e-34 127
Msa0329360 AT5G55580.2 25.926 243 164 6 70 296 114 356 1.52e-25 105
Msa0329360 AT5G55580.1 25.926 243 164 6 70 296 220 462 3.80e-25 105
Msa0329360 AT4G14605.2 26.033 242 170 5 66 300 229 468 2.06e-21 95.1
Msa0329360 AT4G14605.1 26.033 242 170 5 66 300 229 468 2.06e-21 95.1
Msa0329360 AT1G78930.1 27.619 210 144 3 75 277 344 552 6.70e-21 94.0
Msa0329360 AT2G21710.1 28.629 248 161 7 69 303 352 596 1.56e-19 89.7
Msa0329360 AT4G38160.4 25.106 235 163 6 55 277 65 298 1.37e-15 77.0
Msa0329360 AT4G38160.1 25.106 235 163 6 55 277 65 298 1.37e-15 77.0
Msa0329360 AT4G38160.3 25.106 235 163 6 55 277 65 298 1.50e-15 77.0
Msa0329360 AT4G38160.2 25.106 235 163 6 55 277 65 298 2.66e-15 76.3
Msa0329360 AT2G44020.1 23.134 268 159 8 89 311 203 468 7.44e-15 75.5
Msa0329360 AT4G02990.2 23.741 278 163 8 73 303 219 494 1.22e-12 68.9
Msa0329360 AT4G02990.1 23.741 278 163 8 73 303 219 494 1.22e-12 68.9

Find 102 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGTATTAAGAATAATT+TGG 0.227622 2_4:+42526674 Msa0329360:CDS
TTTGCAAACCCTTTCATTCT+AGG 0.246141 2_4:+42524486 Msa0329360:CDS
TCACTAGTCTTTAATAATAA+AGG 0.282485 2_4:-42526843 None:intergenic
TAGTGGTTATGTTAGTTTAC+AGG 0.286851 2_4:+42527037 Msa0329360:three_prime_UTR
CAAAGACGAGTGAAGGATTT+GGG 0.291354 2_4:-42524467 None:intergenic
ACCACAAAGTAATTGTATTT+AGG 0.292252 2_4:-42526699 None:intergenic
TGCAATTGAGTTTCGGCGTT+TGG 0.299697 2_4:+42526320 Msa0329360:CDS
CAATTACTTTGTGGTGGAAA+TGG 0.302908 2_4:+42526707 Msa0329360:CDS
ATCGAATACTTTGAAAATAT+CGG 0.309283 2_4:+42526597 Msa0329360:CDS
AGCAGTAGCAGAACACATTT+TGG 0.318166 2_4:-42524411 None:intergenic
GAGATGGTGGGAGTGTGTTC+TGG 0.336402 2_4:-42524299 None:intergenic
ACATAAACGGTGTGTAGAAA+TGG 0.346811 2_4:+42526803 Msa0329360:CDS
ATGTATTACAGGTTGTAAAA+TGG 0.349290 2_4:+42526118 Msa0329360:intron
GCAAAGACGAGTGAAGGATT+TGG 0.354919 2_4:-42524468 None:intergenic
ATAGAAGAATGAAGAAGAAA+TGG 0.358041 2_4:-42524378 None:intergenic
AATTACTTTGTGGTGGAAAT+GGG 0.364045 2_4:+42526708 Msa0329360:CDS
TCTCATTTAGCTTAGAGAAT+AGG 0.372077 2_4:+42526769 Msa0329360:CDS
CTACCTCCCAACACTGATAC+TGG 0.373802 2_4:+42526159 Msa0329360:CDS
GTGATGTGAAGTGGTTGTTT+TGG 0.382007 2_4:-42527121 None:intergenic
TTGGGAGGTAGAGTTTGATT+TGG 0.389507 2_4:-42526147 None:intergenic
ATTTCTCTGCAATTGAGTTT+CGG 0.390370 2_4:+42526313 Msa0329360:CDS
CGACACTACATGATAGCAAA+TGG 0.394976 2_4:-42526554 None:intergenic
CCTCTTCTATGCCAATACTT+TGG 0.410530 2_4:-42526518 None:intergenic
CCTCCTGCTTAAAACTCCTT+TGG 0.414719 2_4:+42527074 Msa0329360:three_prime_UTR
CCTTGAAAACATCTCCTTTG+TGG 0.416787 2_4:+42526913 Msa0329360:CDS
TTGCAAACCCTTTCATTCTA+GGG 0.423352 2_4:+42524487 Msa0329360:CDS
ACTTTGGTGGTAAGAATCTC+CGG 0.437649 2_4:-42526354 None:intergenic
GGGTATAATGTCTGAGACTT+TGG 0.442292 2_4:-42526370 None:intergenic
TCGTGAGGAATGGAAGGAAA+TGG 0.443191 2_4:-42524519 None:intergenic
GCGTTTGGTTGGCATGTGCC+CGG 0.446971 2_4:+42526335 Msa0329360:CDS
TGGAAACCAGTATCAGTGTT+GGG 0.452228 2_4:-42526165 None:intergenic
TCCACAGTGGAATACATTAC+CGG 0.452556 2_4:+42526285 Msa0329360:CDS
CACCGAGAAGTTCGTGTAAG+TGG 0.461340 2_4:+42526408 Msa0329360:CDS
GTGTGTTCTGGAACGGAGAT+TGG 0.462780 2_4:-42524287 None:intergenic
GAAGAAGAAATGGTTATGAA+TGG 0.466694 2_4:-42524368 None:intergenic
AGCCACTTACACGAACTTCT+CGG 0.475846 2_4:-42526410 None:intergenic
ACATCTCCTTTGTGGTGTGC+TGG 0.485125 2_4:+42526921 Msa0329360:CDS
CATAAACGGTGTGTAGAAAT+GGG 0.489419 2_4:+42526804 Msa0329360:CDS
GCCTAAATACAATTACTTTG+TGG 0.489751 2_4:+42526698 Msa0329360:CDS
GAATGGAAGGAAATGGAAGT+GGG 0.494037 2_4:-42524512 None:intergenic
CTTCTATGCCAATACTTTGG+AGG 0.495955 2_4:-42526515 None:intergenic
TATTGAAAATCATCCGAAGC+TGG 0.499544 2_4:+42526236 Msa0329360:CDS
ATTGAGTTTCGGCGTTTGGT+TGG 0.499938 2_4:+42526324 Msa0329360:CDS
AGATAATGTTAGGAAGTTAG+TGG 0.505657 2_4:+42527020 Msa0329360:three_prime_UTR
GGATTAAGCCTCGACATAAA+CGG 0.510017 2_4:+42526790 Msa0329360:CDS
CACCTTCTTTGTCAGAGCTA+CGG 0.513083 2_4:+42524544 Msa0329360:CDS
CGGTGAAGGAACGTGAAGAC+GGG 0.516327 2_4:-42526390 None:intergenic
AGTGGTTATGTTAGTTTACA+GGG 0.518610 2_4:+42527038 Msa0329360:three_prime_UTR
CTTTGGAGGAAGTACATAGT+AGG 0.519338 2_4:-42526501 None:intergenic
ATGTAATAAATCGTCGTCCT+CGG 0.520791 2_4:+42526445 Msa0329360:CDS
AGTGACGCAGTAACCAGCTT+CGG 0.520879 2_4:-42526249 None:intergenic
TGGTATCAAAATCTGAGCTA+AGG 0.521053 2_4:-42527101 None:intergenic
GGAAATGGGGAGAGATTTGA+AGG 0.522542 2_4:+42526722 Msa0329360:CDS
GTCTTTAATAATAAAGGAAG+AGG 0.522895 2_4:-42526837 None:intergenic
GGGTAATAGTGTTGAGATGG+TGG 0.527299 2_4:-42524312 None:intergenic
AGAAGGTGGGTCGTGAGGAA+TGG 0.533372 2_4:-42524529 None:intergenic
GGAATGGAAGGAAATGGAAG+TGG 0.540119 2_4:-42524513 None:intergenic
AGTGGGGACCCTAGAATGAA+AGG 0.540231 2_4:-42524495 None:intergenic
TTGGAAACCAGTATCAGTGT+TGG 0.541510 2_4:-42526166 None:intergenic
GATTGGAGAAGTGATGGATG+AGG 0.542930 2_4:-42524270 None:intergenic
TAAATACAATTACTTTGTGG+TGG 0.543115 2_4:+42526701 Msa0329360:CDS
GACACTACATGATAGCAAAT+GGG 0.553619 2_4:-42526553 None:intergenic
ATGTACTTCCTCCAAAGTAT+TGG 0.554399 2_4:+42526507 Msa0329360:CDS
TCGGTGAAGGAACGTGAAGA+CGG 0.554418 2_4:-42526391 None:intergenic
AATTGCAGAGAAATCCATTC+CGG 0.562172 2_4:-42526304 None:intergenic
TTTGGGAATGTGGTGATCGG+TGG 0.563121 2_4:-42524450 None:intergenic
GGTGGGTCGTGAGGAATGGA+AGG 0.564987 2_4:-42524525 None:intergenic
GGGTTTGCAAAGACGAGTGA+AGG 0.566400 2_4:-42524474 None:intergenic
AAGCTAAATGAGAAATAATG+AGG 0.567357 2_4:-42526759 None:intergenic
GGATTTGGGAATGTGGTGAT+CGG 0.571770 2_4:-42524453 None:intergenic
ACATTCTTTGTGATGTGAAG+TGG 0.572952 2_4:-42527130 None:intergenic
TATAATGTCTGAGACTTTGG+TGG 0.577681 2_4:-42526367 None:intergenic
GTGGGGACCCTAGAATGAAA+GGG 0.587170 2_4:-42524494 None:intergenic
CTTTGGTGGTAAGAATCTCC+GGG 0.592939 2_4:-42526353 None:intergenic
GACAAAGAAGGTGGGTCGTG+AGG 0.595553 2_4:-42524534 None:intergenic
AACCGTAGCTCTGACAAAGA+AGG 0.595582 2_4:-42524546 None:intergenic
ATTACTTTGTGGTGGAAATG+GGG 0.596286 2_4:+42526709 Msa0329360:CDS
AACGGAGATTGGAGAAGTGA+TGG 0.597106 2_4:-42524276 None:intergenic
GTGGTGATCGGTGGAAAACA+AGG 0.598610 2_4:-42524441 None:intergenic
TCTATACTTGATCAATATCA+CGG 0.599535 2_4:-42526944 None:intergenic
CCAAAGTATTGGCATAGAAG+AGG 0.600971 2_4:+42526518 Msa0329360:CDS
TTACACGAACTTCTCGGTGA+AGG 0.604014 2_4:-42526404 None:intergenic
AGTGGAATACATTACCGGAA+TGG 0.608509 2_4:+42526290 Msa0329360:CDS
CGTAGCTCTGACAAAGAAGG+TGG 0.608988 2_4:-42524543 None:intergenic
TCTACACACCGTTTATGTCG+AGG 0.610087 2_4:-42526798 None:intergenic
AATGGGTAATAGTGTTGAGA+TGG 0.626913 2_4:-42524315 None:intergenic
ATACTATAACAAAACAGCTG+AGG 0.633616 2_4:-42526660 None:intergenic
AATGGGGAGAGATTTGAAGG+AGG 0.634987 2_4:+42526725 Msa0329360:CDS
GTCTTGTATCTAGAATCTAT+CGG 0.638166 2_4:+42526195 Msa0329360:CDS
GAGTGAAGGATTTGGGAATG+TGG 0.645827 2_4:-42524460 None:intergenic
GGTGGGAGTGTGTTCTGGAA+CGG 0.663260 2_4:-42524294 None:intergenic
GGTAATAGTGTTGAGATGGT+GGG 0.668740 2_4:-42524311 None:intergenic
TCTGAGCTAAGGAACACCAA+AGG 0.675119 2_4:-42527090 None:intergenic
TCACGGCCAGCACACCACAA+AGG 0.684243 2_4:-42526927 None:intergenic
GAAACATCGATGTAGTGTCA+CGG 0.690841 2_4:-42526629 None:intergenic
TCCGGTAATGTATTCCACTG+TGG 0.695997 2_4:-42526286 None:intergenic
AATGGAAGGAAATGGAAGTG+GGG 0.702093 2_4:-42524511 None:intergenic
GTAGCTCTGACAAAGAAGGT+GGG 0.703208 2_4:-42524542 None:intergenic
ACATTGCAAATGATCAACCG+AGG 0.728440 2_4:-42526462 None:intergenic
AAACCAGTATCAGTGTTGGG+AGG 0.731689 2_4:-42526162 None:intergenic
TGGTGATCGGTGGAAAACAA+GGG 0.748516 2_4:-42524440 None:intergenic
TGACGATATAAAATCCACAG+TGG 0.749902 2_4:+42526272 Msa0329360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTAAAATTGAAAAAAA+TGG - chr2_4:42524336-42524355 None:intergenic 10.0%
!!! ATAATTTAGTTTTTATTACT+GGG + chr2_4:42524763-42524782 Msa0329360:intron 10.0%
!! TATTCAATTCAATTAATAAA+AGG - chr2_4:42525194-42525213 None:intergenic 10.0%
!! TTATAGTATTAAGAATAATT+TGG + chr2_4:42526674-42526693 Msa0329360:CDS 10.0%
!!! AAATTTTCATTTTTCTTACT+GGG + chr2_4:42524593-42524612 Msa0329360:intron 15.0%
!!! AAGTTTTCATTTTTATTACT+GGG + chr2_4:42524677-42524696 Msa0329360:intron 15.0%
!!! AAGTTTTCATTTTTATTACT+GGG + chr2_4:42524677-42524696 Msa0329360:intron 15.0%
!!! GATAATTTAGTTTTTATTAC+TGG + chr2_4:42524762-42524781 Msa0329360:intron 15.0%
!!! AAGAATTTAGTTATGTTTTT+GGG + chr2_4:42524948-42524967 Msa0329360:intron 15.0%
!!! TTTTTCTTTTTATTTTGCTT+TGG + chr2_4:42525027-42525046 Msa0329360:intron 15.0%
!!! TTTTCTTTTTATTTTGCTTT+GGG + chr2_4:42525028-42525047 Msa0329360:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr2_4:42525348-42525367 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG - chr2_4:42525347-42525366 None:intergenic 15.0%
!! AACTATTAAAATCAACTAAA+AGG + chr2_4:42525265-42525284 Msa0329360:intron 15.0%
!! AACTATTAAAATCAACTAAA+AGG - chr2_4:42525265-42525284 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG + chr2_4:42525347-42525366 Msa0329360:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG + chr2_4:42525348-42525367 Msa0329360:intron 15.0%
!!! ATTTTGCTTATTTTTTGAAA+CGG - chr2_4:42525595-42525614 None:intergenic 15.0%
!!! AATTTGCTTATTTTTTGAAA+TGG + chr2_4:42525675-42525694 Msa0329360:intron 15.0%
!! TGAAAATTTGAAGATTATTG+AGG - chr2_4:42524582-42524601 None:intergenic 20.0%
!!! CAAATTTTCATTTTTCTTAC+TGG + chr2_4:42524592-42524611 Msa0329360:intron 20.0%
!!! CAAGTTTTCATTTTTATTAC+TGG + chr2_4:42524676-42524695 Msa0329360:intron 20.0%
!!! CAAGTTTTCATTTTTATTAC+TGG + chr2_4:42524676-42524695 Msa0329360:intron 20.0%
!!! TACTTTAGATTTTTCTTGAT+TGG + chr2_4:42524815-42524834 Msa0329360:intron 20.0%
!!! CAAGAATTTAGTTATGTTTT+TGG + chr2_4:42524947-42524966 Msa0329360:intron 20.0%
!!! TTTCTTTTTATTTTGCTTTG+GGG + chr2_4:42525029-42525048 Msa0329360:intron 20.0%
!!! TTTGGTTAGGATTTTATTAA+CGG + chr2_4:42525428-42525447 Msa0329360:intron 20.0%
!!! ATTTTATTAACGGATGTAAA+TGG + chr2_4:42525438-42525457 Msa0329360:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG + chr2_4:42525604-42525623 Msa0329360:intron 20.0%
!!! ATAAGCAAATTTCACTTTTT+AGG - chr2_4:42525666-42525685 None:intergenic 20.0%
!! TTAATTTCATGCTTTAGTAA+AGG + chr2_4:42526019-42526038 Msa0329360:intron 20.0%
!!! TATTTTCAAAGTATTCGATT+CGG - chr2_4:42526596-42526615 None:intergenic 20.0%
!!! ATCGAATACTTTGAAAATAT+CGG + chr2_4:42526597-42526616 Msa0329360:CDS 20.0%
!!! TCACTAGTCTTTAATAATAA+AGG - chr2_4:42526846-42526865 None:intergenic 20.0%
!!! TTTTGTGACTTTTTCTTTTA+TGG + chr2_4:42526995-42527014 Msa0329360:three_prime_UTR 20.0%
!!! TTTTATGGATAGATAATGTT+AGG + chr2_4:42527010-42527029 Msa0329360:three_prime_UTR 20.0%
! ATAGAAGAATGAAGAAGAAA+TGG - chr2_4:42524381-42524400 None:intergenic 25.0%
! GCTTAATAATGCTAAAGTTT+AGG + chr2_4:42524621-42524640 Msa0329360:intron 25.0%
!!! CTATTATTCTAAGACATTGT+TGG + chr2_4:42524914-42524933 Msa0329360:intron 25.0%
! CAACAGAATTCAACAATAAA+CGG - chr2_4:42524979-42524998 None:intergenic 25.0%
! AGTGCTTAAATCTTATTGAT+AGG + chr2_4:42525065-42525084 Msa0329360:intron 25.0%
! GTGCTTAAATCTTATTGATA+GGG + chr2_4:42525066-42525085 Msa0329360:intron 25.0%
! TGCTTAAATCTTATTGATAG+GGG + chr2_4:42525067-42525086 Msa0329360:intron 25.0%
! TTAAGCACTTAAAAACCAAA+GGG - chr2_4:42525133-42525152 None:intergenic 25.0%
! TAATAGTTTAGGGACTAAAT+TGG - chr2_4:42525253-42525272 None:intergenic 25.0%
! ACCAAATTGACAAATAGTTT+AGG + chr2_4:42525371-42525390 Msa0329360:intron 25.0%
! CCAAATTGACAAATAGTTTA+GGG + chr2_4:42525372-42525391 Msa0329360:intron 25.0%
! ACATTATATTACAGTGTGTT+TGG + chr2_4:42525410-42525429 Msa0329360:intron 25.0%
!!! TTGCTTATTTTTTGAAATGG+AGG + chr2_4:42525678-42525697 Msa0329360:intron 25.0%
!!! TGCTTATTTTTTGAAATGGA+GGG + chr2_4:42525679-42525698 Msa0329360:intron 25.0%
! CAGTAAAGTTTATCATGTAA+CGG - chr2_4:42525950-42525969 None:intergenic 25.0%
! TGTCAATAACATACTTTCTT+TGG + chr2_4:42525970-42525989 Msa0329360:intron 25.0%
! GAAATTAATGTGCATTTAAC+AGG - chr2_4:42526007-42526026 None:intergenic 25.0%
! ATGTATTACAGGTTGTAAAA+TGG + chr2_4:42526118-42526137 Msa0329360:intron 25.0%
!!! ATTTTCAAAGTATTCGATTC+GGG - chr2_4:42526595-42526614 None:intergenic 25.0%
! ACCACAAAGTAATTGTATTT+AGG - chr2_4:42526702-42526721 None:intergenic 25.0%
! TAAATACAATTACTTTGTGG+TGG + chr2_4:42526701-42526720 Msa0329360:CDS 25.0%
! AAGCTAAATGAGAAATAATG+AGG - chr2_4:42526762-42526781 None:intergenic 25.0%
! GTCTTTAATAATAAAGGAAG+AGG - chr2_4:42526840-42526859 None:intergenic 25.0%
! TCTATACTTGATCAATATCA+CGG - chr2_4:42526947-42526966 None:intergenic 25.0%
! AAGAAAAAGTCACAAAAACA+AGG - chr2_4:42526992-42527011 None:intergenic 25.0%
GAAGAAGAAATGGTTATGAA+TGG - chr2_4:42524371-42524390 None:intergenic 30.0%
TGAAGATTATTGAGGTTGAA+AGG - chr2_4:42524574-42524593 None:intergenic 30.0%
!! AAGTTTAGGTTTTTCTTACC+CGG + chr2_4:42524635-42524654 Msa0329360:intron 30.0%
AACATAATTAAGCATAGACC+GGG - chr2_4:42524656-42524675 None:intergenic 30.0%
GAACATAATTAAGCATAGAC+CGG - chr2_4:42524657-42524676 None:intergenic 30.0%
TAATGAATGATGCTCTAGTT+TGG + chr2_4:42524847-42524866 Msa0329360:intron 30.0%
ACATAACTAAATTCTTGCCA+AGG - chr2_4:42524944-42524963 None:intergenic 30.0%
AAAAACCTTAATCCTTCAAG+AGG - chr2_4:42525011-42525030 None:intergenic 30.0%
CTTAAGCACTTAAAAACCAA+AGG - chr2_4:42525134-42525153 None:intergenic 30.0%
!!! CTTTGGTTTTTAAGTGCTTA+AGG + chr2_4:42525132-42525151 Msa0329360:intron 30.0%
TATACTCTCATCCATCAATT+TGG - chr2_4:42525314-42525333 None:intergenic 30.0%
! ATGGATGAGAGTATAGTTTA+AGG + chr2_4:42525319-42525338 Msa0329360:intron 30.0%
CCCTAAACTATTTGTCAATT+TGG - chr2_4:42525375-42525394 None:intergenic 30.0%
ATATTACAGTGTGTTTGGTT+AGG + chr2_4:42525415-42525434 Msa0329360:intron 30.0%
!!! TGCTTATTTTTTGAAACGGA+GGG - chr2_4:42525591-42525610 None:intergenic 30.0%
!!! TTGCTTATTTTTTGAAACGG+AGG - chr2_4:42525592-42525611 None:intergenic 30.0%
GGAGTAAAAAACTTGATCAA+TGG + chr2_4:42525776-42525795 Msa0329360:intron 30.0%
ATTAATGTGCATTTAACAGG+AGG - chr2_4:42526004-42526023 None:intergenic 30.0%
TATTTGCTTGCATGTTGAAT+TGG + chr2_4:42526049-42526068 Msa0329360:intron 30.0%
!! TGATACTGGTTTCCAAAAAA+AGG + chr2_4:42526173-42526192 Msa0329360:CDS 30.0%
!!! CTAGATACAAGACCTTTTTT+TGG - chr2_4:42526188-42526207 None:intergenic 30.0%
! GTCTTGTATCTAGAATCTAT+CGG + chr2_4:42526195-42526214 Msa0329360:CDS 30.0%
ATTTCTCTGCAATTGAGTTT+CGG + chr2_4:42526313-42526332 Msa0329360:CDS 30.0%
!! TTTTCAAAGTATTCGATTCG+GGG - chr2_4:42526594-42526613 None:intergenic 30.0%
ATACTATAACAAAACAGCTG+AGG - chr2_4:42526663-42526682 None:intergenic 30.0%
GCCTAAATACAATTACTTTG+TGG + chr2_4:42526698-42526717 Msa0329360:CDS 30.0%
! AATTACTTTGTGGTGGAAAT+GGG + chr2_4:42526708-42526727 Msa0329360:CDS 30.0%
! TCTCATTTAGCTTAGAGAAT+AGG + chr2_4:42526769-42526788 Msa0329360:CDS 30.0%
AGATAATGTTAGGAAGTTAG+TGG + chr2_4:42527020-42527039 Msa0329360:three_prime_UTR 30.0%
! TAGTGGTTATGTTAGTTTAC+AGG + chr2_4:42527037-42527056 Msa0329360:three_prime_UTR 30.0%
! AGTGGTTATGTTAGTTTACA+GGG + chr2_4:42527038-42527057 Msa0329360:three_prime_UTR 30.0%
! AATGGGTAATAGTGTTGAGA+TGG - chr2_4:42524318-42524337 None:intergenic 35.0%
TTTGCAAACCCTTTCATTCT+AGG + chr2_4:42524486-42524505 Msa0329360:CDS 35.0%
TTGCAAACCCTTTCATTCTA+GGG + chr2_4:42524487-42524506 Msa0329360:CDS 35.0%
TTATTGATAGGGGAAATTGC+TGG + chr2_4:42525077-42525096 Msa0329360:intron 35.0%
! GCTGGTACATGATTGTATTT+TGG + chr2_4:42525095-42525114 Msa0329360:intron 35.0%
TTGCTATCAGGATAGTTACA+CGG + chr2_4:42525159-42525178 Msa0329360:intron 35.0%
TGGTGAGAGAGTGATAATTT+AGG - chr2_4:42525233-42525252 None:intergenic 35.0%
GTCCATAAACTATACTCTCA+GGG + chr2_4:42525287-42525306 Msa0329360:intron 35.0%
TGACAAATAGTTTAGGGACT+AGG + chr2_4:42525378-42525397 Msa0329360:intron 35.0%
AACAATAGTTGAGCAAAAGG+AGG - chr2_4:42525468-42525487 None:intergenic 35.0%
! TCCTTTTGCTCAACTATTGT+TGG + chr2_4:42525467-42525486 Msa0329360:intron 35.0%
TCCAACAATAGTTGAGCAAA+AGG - chr2_4:42525471-42525490 None:intergenic 35.0%
TCTATAGCTTCTTGGTCTAA+TGG - chr2_4:42525756-42525775 None:intergenic 35.0%
ATTAGACCAAGAAGCTATAG+AGG + chr2_4:42525755-42525774 Msa0329360:intron 35.0%
TTTACTCCTCTATAGCTTCT+TGG - chr2_4:42525764-42525783 None:intergenic 35.0%
ACTTGATCAATGGTTCACTT+AGG + chr2_4:42525786-42525805 Msa0329360:intron 35.0%
GAAAGCAATATGCATATCAG+AGG - chr2_4:42525895-42525914 None:intergenic 35.0%
TATTGAAAATCATCCGAAGC+TGG + chr2_4:42526236-42526255 Msa0329360:CDS 35.0%
TGACGATATAAAATCCACAG+TGG + chr2_4:42526272-42526291 Msa0329360:CDS 35.0%
AATTGCAGAGAAATCCATTC+CGG - chr2_4:42526307-42526326 None:intergenic 35.0%
! TATAATGTCTGAGACTTTGG+TGG - chr2_4:42526370-42526389 None:intergenic 35.0%
ATGTAATAAATCGTCGTCCT+CGG + chr2_4:42526445-42526464 Msa0329360:CDS 35.0%
ATGTACTTCCTCCAAAGTAT+TGG + chr2_4:42526507-42526526 Msa0329360:CDS 35.0%
GACACTACATGATAGCAAAT+GGG - chr2_4:42526556-42526575 None:intergenic 35.0%
! CAATTACTTTGTGGTGGAAA+TGG + chr2_4:42526707-42526726 Msa0329360:CDS 35.0%
! ATTACTTTGTGGTGGAAATG+GGG + chr2_4:42526709-42526728 Msa0329360:CDS 35.0%
ACATAAACGGTGTGTAGAAA+TGG + chr2_4:42526803-42526822 Msa0329360:CDS 35.0%
CATAAACGGTGTGTAGAAAT+GGG + chr2_4:42526804-42526823 Msa0329360:CDS 35.0%
! CACAAAGGAGATGTTTTCAA+GGG - chr2_4:42526915-42526934 None:intergenic 35.0%
TGGTATCAAAATCTGAGCTA+AGG - chr2_4:42527104-42527123 None:intergenic 35.0%
! GGTAATAGTGTTGAGATGGT+GGG - chr2_4:42524314-42524333 None:intergenic 40.0%
!! GTAGCAGAACACATTTTGGT+TGG - chr2_4:42524410-42524429 None:intergenic 40.0%
! AGCAGTAGCAGAACACATTT+TGG - chr2_4:42524414-42524433 None:intergenic 40.0%
CAAAGACGAGTGAAGGATTT+GGG - chr2_4:42524470-42524489 None:intergenic 40.0%
AATGGAAGGAAATGGAAGTG+GGG - chr2_4:42524514-42524533 None:intergenic 40.0%
GAATGGAAGGAAATGGAAGT+GGG - chr2_4:42524515-42524534 None:intergenic 40.0%
! ATGCTCTAGTTTGGCTGTTT+GGG + chr2_4:42524856-42524875 Msa0329360:intron 40.0%
! AAGACATTGTTGGTTGTCCT+TGG + chr2_4:42524924-42524943 Msa0329360:intron 40.0%
TTGTGTTCTTTGCCTCTTGA+AGG + chr2_4:42524996-42525015 Msa0329360:intron 40.0%
CTTTGCCTCTTGAAGGATTA+AGG + chr2_4:42525003-42525022 Msa0329360:intron 40.0%
TGGATAAAGTTGCTACCCTT+TGG + chr2_4:42525115-42525134 Msa0329360:intron 40.0%
! GCTTAAGGATTCTTGCTATC+AGG + chr2_4:42525147-42525166 Msa0329360:intron 40.0%
GGTCCATAAACTATACTCTC+AGG + chr2_4:42525286-42525305 Msa0329360:intron 40.0%
! GTCCCTGAGAGTATAGTTTA+TGG - chr2_4:42525292-42525311 None:intergenic 40.0%
GCCACAGAGCATAAAACTAA+GGG - chr2_4:42525520-42525539 None:intergenic 40.0%
GTAGTCAGTATAGGATGGAT+GGG - chr2_4:42525920-42525939 None:intergenic 40.0%
AGTAGTCAGTATAGGATGGA+TGG - chr2_4:42525921-42525940 None:intergenic 40.0%
ACTCAGTAGTCAGTATAGGA+TGG - chr2_4:42525925-42525944 None:intergenic 40.0%
GGATACTCAGTAGTCAGTAT+AGG - chr2_4:42525929-42525948 None:intergenic 40.0%
! CTGTAATACATCAGAAGCAC+AGG - chr2_4:42526109-42526128 None:intergenic 40.0%
CTGTGCTTCTGATGTATTAC+AGG + chr2_4:42526107-42526126 Msa0329360:intron 40.0%
TTGGGAGGTAGAGTTTGATT+TGG - chr2_4:42526150-42526169 None:intergenic 40.0%
TGGAAACCAGTATCAGTGTT+GGG - chr2_4:42526168-42526187 None:intergenic 40.0%
TTGGAAACCAGTATCAGTGT+TGG - chr2_4:42526169-42526188 None:intergenic 40.0%
TCCACAGTGGAATACATTAC+CGG + chr2_4:42526285-42526304 Msa0329360:CDS 40.0%
AGTGGAATACATTACCGGAA+TGG + chr2_4:42526290-42526309 Msa0329360:CDS 40.0%
! ACTTTGGTGGTAAGAATCTC+CGG - chr2_4:42526357-42526376 None:intergenic 40.0%
! GGGTATAATGTCTGAGACTT+TGG - chr2_4:42526373-42526392 None:intergenic 40.0%
ACATTGCAAATGATCAACCG+AGG - chr2_4:42526465-42526484 None:intergenic 40.0%
! CTTTGGAGGAAGTACATAGT+AGG - chr2_4:42526504-42526523 None:intergenic 40.0%
CTTCTATGCCAATACTTTGG+AGG - chr2_4:42526518-42526537 None:intergenic 40.0%
CCTCTTCTATGCCAATACTT+TGG - chr2_4:42526521-42526540 None:intergenic 40.0%
!! CCAAAGTATTGGCATAGAAG+AGG + chr2_4:42526518-42526537 Msa0329360:CDS 40.0%
CGACACTACATGATAGCAAA+TGG - chr2_4:42526557-42526576 None:intergenic 40.0%
GAAACATCGATGTAGTGTCA+CGG - chr2_4:42526632-42526651 None:intergenic 40.0%
GGATTAAGCCTCGACATAAA+CGG + chr2_4:42526790-42526809 Msa0329360:CDS 40.0%
! CCACAAAGGAGATGTTTTCA+AGG - chr2_4:42526916-42526935 None:intergenic 40.0%
CCTTGAAAACATCTCCTTTG+TGG + chr2_4:42526913-42526932 Msa0329360:CDS 40.0%
!!! ACACCAAAGGAGTTTTAAGC+AGG - chr2_4:42527080-42527099 None:intergenic 40.0%
! GTGATGTGAAGTGGTTGTTT+TGG - chr2_4:42527124-42527143 None:intergenic 40.0%
AACGGAGATTGGAGAAGTGA+TGG - chr2_4:42524279-42524298 None:intergenic 45.0%
! GGGTAATAGTGTTGAGATGG+TGG - chr2_4:42524315-42524334 None:intergenic 45.0%
TGGTGATCGGTGGAAAACAA+GGG - chr2_4:42524443-42524462 None:intergenic 45.0%
GGATTTGGGAATGTGGTGAT+CGG - chr2_4:42524456-42524475 None:intergenic 45.0%
GAGTGAAGGATTTGGGAATG+TGG - chr2_4:42524463-42524482 None:intergenic 45.0%
GCAAAGACGAGTGAAGGATT+TGG - chr2_4:42524471-42524490 None:intergenic 45.0%
GGAATGGAAGGAAATGGAAG+TGG - chr2_4:42524516-42524535 None:intergenic 45.0%
TCGTGAGGAATGGAAGGAAA+TGG - chr2_4:42524522-42524541 None:intergenic 45.0%
!! GTAGCTCTGACAAAGAAGGT+GGG - chr2_4:42524545-42524564 None:intergenic 45.0%
CACCTTCTTTGTCAGAGCTA+CGG + chr2_4:42524544-42524563 Msa0329360:CDS 45.0%
!! AACCGTAGCTCTGACAAAGA+AGG - chr2_4:42524549-42524568 None:intergenic 45.0%
! GATGCTCTAGTTTGGCTGTT+TGG + chr2_4:42524855-42524874 Msa0329360:intron 45.0%
ACTCTCAGGGACCAAATTGA+TGG + chr2_4:42525300-42525319 Msa0329360:intron 45.0%
!!! GCCCTTAGTTTTATGCTCTG+TGG + chr2_4:42525516-42525535 Msa0329360:intron 45.0%
CGCCACAGAGCATAAAACTA+AGG - chr2_4:42525521-42525540 None:intergenic 45.0%
TGCGACCCTTATTCTTTCGA+CGG + chr2_4:42525542-42525561 Msa0329360:intron 45.0%
ATCCCCCGTCGAAAGAATAA+GGG - chr2_4:42525550-42525569 None:intergenic 45.0%
TCCTCGTGATATCAGTTCTC+TGG + chr2_4:42525864-42525883 Msa0329360:intron 45.0%
ACCAGAGAACTGATATCACG+AGG - chr2_4:42525868-42525887 None:intergenic 45.0%
! AAACCAGTATCAGTGTTGGG+AGG - chr2_4:42526165-42526184 None:intergenic 45.0%
TCCGGTAATGTATTCCACTG+TGG - chr2_4:42526289-42526308 None:intergenic 45.0%
TGCAATTGAGTTTCGGCGTT+TGG + chr2_4:42526320-42526339 Msa0329360:CDS 45.0%
ATTGAGTTTCGGCGTTTGGT+TGG + chr2_4:42526324-42526343 Msa0329360:CDS 45.0%
! CTTTGGTGGTAAGAATCTCC+GGG - chr2_4:42526356-42526375 None:intergenic 45.0%
TTACACGAACTTCTCGGTGA+AGG - chr2_4:42526407-42526426 None:intergenic 45.0%
AGCCACTTACACGAACTTCT+CGG - chr2_4:42526413-42526432 None:intergenic 45.0%
GGAAATGGGGAGAGATTTGA+AGG + chr2_4:42526722-42526741 Msa0329360:CDS 45.0%
AATGGGGAGAGATTTGAAGG+AGG + chr2_4:42526725-42526744 Msa0329360:CDS 45.0%
TCTACACACCGTTTATGTCG+AGG - chr2_4:42526801-42526820 None:intergenic 45.0%
!!! CCAAAGGAGTTTTAAGCAGG+AGG - chr2_4:42527077-42527096 None:intergenic 45.0%
CCTCCTGCTTAAAACTCCTT+TGG + chr2_4:42527074-42527093 Msa0329360:three_prime_UTR 45.0%
TCTGAGCTAAGGAACACCAA+AGG - chr2_4:42527093-42527112 None:intergenic 45.0%
!! AAATTAAAATTGAAAAAAAT+GGG - chr2_4:42524335-42524354 None:intergenic 5.0%
!! GTGTGTTCTGGAACGGAGAT+TGG - chr2_4:42524290-42524309 None:intergenic 50.0%
GTGGTGATCGGTGGAAAACA+AGG - chr2_4:42524444-42524463 None:intergenic 50.0%
TTTGGGAATGTGGTGATCGG+TGG - chr2_4:42524453-42524472 None:intergenic 50.0%
GGGTTTGCAAAGACGAGTGA+AGG - chr2_4:42524477-42524496 None:intergenic 50.0%
GTGGGGACCCTAGAATGAAA+GGG - chr2_4:42524497-42524516 None:intergenic 50.0%
AGTGGGGACCCTAGAATGAA+AGG - chr2_4:42524498-42524517 None:intergenic 50.0%
!! CGTAGCTCTGACAAAGAAGG+TGG - chr2_4:42524546-42524565 None:intergenic 50.0%
GCGACCCTTATTCTTTCGAC+GGG + chr2_4:42525543-42525562 Msa0329360:intron 50.0%
CGACCCTTATTCTTTCGACG+GGG + chr2_4:42525544-42525563 Msa0329360:intron 50.0%
GACCCTTATTCTTTCGACGG+GGG + chr2_4:42525545-42525564 Msa0329360:intron 50.0%
CATCCCCCGTCGAAAGAATA+AGG - chr2_4:42525551-42525570 None:intergenic 50.0%
CTACCTCCCAACACTGATAC+TGG + chr2_4:42526159-42526178 Msa0329360:CDS 50.0%
AGTGACGCAGTAACCAGCTT+CGG - chr2_4:42526252-42526271 None:intergenic 50.0%
TCGGTGAAGGAACGTGAAGA+CGG - chr2_4:42526394-42526413 None:intergenic 50.0%
CACCGAGAAGTTCGTGTAAG+TGG + chr2_4:42526408-42526427 Msa0329360:CDS 50.0%
ACATCTCCTTTGTGGTGTGC+TGG + chr2_4:42526921-42526940 Msa0329360:CDS 50.0%
!! GGTGGGAGTGTGTTCTGGAA+CGG - chr2_4:42524297-42524316 None:intergenic 55.0%
!! GAGATGGTGGGAGTGTGTTC+TGG - chr2_4:42524302-42524321 None:intergenic 55.0%
AGAAGGTGGGTCGTGAGGAA+TGG - chr2_4:42524532-42524551 None:intergenic 55.0%
GACAAAGAAGGTGGGTCGTG+AGG - chr2_4:42524537-42524556 None:intergenic 55.0%
CGGTGAAGGAACGTGAAGAC+GGG - chr2_4:42526393-42526412 None:intergenic 55.0%
GGTGGGTCGTGAGGAATGGA+AGG - chr2_4:42524528-42524547 None:intergenic 60.0%
GCGTTTGGTTGGCATGTGCC+CGG + chr2_4:42526335-42526354 Msa0329360:CDS 60.0%
TCACGGCCAGCACACCACAA+AGG - chr2_4:42526930-42526949 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 42524271 42527147 42524271 ID=Msa0329360;Name=Msa0329360
chr2_4 mRNA 42524271 42527147 42524271 ID=Msa0329360-mRNA-1;Parent=Msa0329360;Name=Msa0329360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=145|1|1|1|1|1|2|182|328
chr2_4 exon 42524271 42524565 42524271 ID=Msa0329360-mRNA-1:exon:13137;Parent=Msa0329360-mRNA-1
chr2_4 exon 42526129 42527147 42526129 ID=Msa0329360-mRNA-1:exon:13138;Parent=Msa0329360-mRNA-1
chr2_4 five_prime_UTR 42524271 42524415 42524271 ID=Msa0329360-mRNA-1:five_prime_utr;Parent=Msa0329360-mRNA-1
chr2_4 CDS 42524416 42524565 42524416 ID=Msa0329360-mRNA-1:cds;Parent=Msa0329360-mRNA-1
chr2_4 CDS 42526129 42526965 42526129 ID=Msa0329360-mRNA-1:cds;Parent=Msa0329360-mRNA-1
chr2_4 three_prime_UTR 42526966 42527147 42526966 ID=Msa0329360-mRNA-1:three_prime_utr;Parent=Msa0329360-mRNA-1
Gene Sequence

>Msa0329360

ATGTGTTCTGCTACTGCTACAACACCCTTGTTTTCCACCGATCACCACATTCCCAAATCCTTCACTCGTCTTTGCAAACCCTTTCATTCTAGGGTCCCCACTTCCATTTCCTTCCATTCCTCACGACCCACCTTCTTTGTCAGAGCTACGGTTGTAAAATGGCGATGTCCAAATCAAACTCTACCTCCCAACACTGATACTGGTTTCCAAAAAAAGGTCTTGTATCTAGAATCTATCGGTATTGACTCTTTCTCATTTATTGAAAATCATCCGAAGCTGGTTACTGCGTCACTTGACGATATAAAATCCACAGTGGAATACATTACCGGAATGGATTTCTCTGCAATTGAGTTTCGGCGTTTGGTTGGCATGTGCCCGGAGATTCTTACCACCAAAGTCTCAGACATTATACCCGTCTTCACGTTCCTTCACCGAGAAGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAATCGTCGTCCTCGGTTGATCATTTGCAATGTTGATAAGCAACTTCGTCCTACTATGTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACCCATTTGCTATCATGTAGTGTCGAAGACAAGTTTATACCCCGAATCGAATACTTTGAAAATATCGGATTCTCTCGCCGTGACACTACATCGATGTTTCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCTAAATACAATTACTTTGTGGTGGAAATGGGGAGAGATTTGAAGGAGGTGAAAGAATTTCCTCATTATTTCTCATTTAGCTTAGAGAATAGGATTAAGCCTCGACATAAACGGTGTGTAGAAATGGGTGTGTGTTTTCCTCTTCCTTTATTATTAAAGACTAGTGAAGTTGCATTTCAGAATAGATTAGAAGCATTTGTAAATTCTTCAACACCCTTGAAAACATCTCCTTTGTGGTGTGCTGGCCGTGATATTGATCAAGTATAG

Protein sequence

>Msa0329360

MCSATATTPLFSTDHHIPKSFTRLCKPFHSRVPTSISFHSSRPTFFVRATVVKWRCPNQTLPPNTDTGFQKKVLYLESIGIDSFSFIENHPKLVTASLDDIKSTVEYITGMDFSAIEFRRLVGMCPEILTTKVSDIIPVFTFLHREVRVSGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIEEVNKHTHLLSCSVEDKFIPRIEYFENIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKYNYFVVEMGRDLKEVKEFPHYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVAFQNRLEAFVNSSTPLKTSPLWCAGRDIDQV*