AlfalfaGEDB | Msa0745270

M. sativa cultivar zhongmu-4 / Msa0745270

KEGG: K08909
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745270	XP_013454459.1	98.917	277	3	0	1	277	1	277	0.0	554

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745270	sp\|Q32904\|CB23_PEA	88.087	277	31	1	1	277	1	275	7.95e-180	498

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745270	I3SZG9	98.917	277	3	0	1	277	1	277	0.0	554

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0745270	0.814231	1.712075e-51	-8.615850e-47
Msa0000610	Msa0745270	0.817706	2.869082e-52	-8.615850e-47
Msa0000800	Msa0745270	-0.817750	2.805120e-52	-8.615850e-47
Msa0001040	Msa0745270	0.812754	3.615792e-51	-8.615850e-47
Msa0001510	Msa0745270	0.901502	2.512293e-78	-8.615850e-47
Msa0001540	Msa0745270	0.824754	6.799990e-54	-8.615850e-47
Msa0001550	Msa0745270	0.820355	7.166996e-53	-8.615850e-47
Msa0002110	Msa0745270	0.885619	6.957656e-72	-8.615850e-47
Msa0002690	Msa0745270	0.945365	3.501322e-104	-8.615850e-47
Msa0002700	Msa0745270	0.936006	3.457443e-97	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745270	MtrunA17_Chr5g0448421	98.917	277	3	0	1	277	1	277	0.0	554
Msa0745270	MtrunA17_Chr5g0448411	95.307	277	11	1	1	277	1	275	0.0	531
Msa0745270	MtrunA17_Chr3g0133901	47.436	234	101	9	47	274	45	262	5.24e-61	194
Msa0745270	MtrunA17_Chr8g0345631	42.500	240	112	7	37	274	50	265	6.35e-52	171
Msa0745270	MtrunA17_Chr3g0092091	40.727	275	127	10	9	274	2	249	1.57e-48	161
Msa0745270	MtrunA17_Chr2g0301081	43.111	225	101	7	56	274	61	264	2.28e-48	161
Msa0745270	MtrunA17_Chr4g0051941	37.868	272	131	11	10	269	9	254	1.37e-38	136
Msa0745270	MtrunA17_Chr5g0447531	38.542	288	123	15	1	269	1	253	7.63e-38	134
Msa0745270	MtrunA17_Chr6g0453141	36.466	266	134	9	14	269	13	253	3.45e-37	132
Msa0745270	MtrunA17_Chr6g0453151	41.014	217	93	9	63	269	129	320	5.32e-37	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745270	AT1G61520.3	85.921	277	35	3	1	277	1	273	1.40e-167	465
Msa0745270	AT1G61520.1	85.921	277	35	3	1	277	1	273	1.40e-167	465
Msa0745270	AT1G61520.2	89.545	220	18	1	58	277	4	218	1.36e-144	404
Msa0745270	AT1G45474.2	42.188	256	126	9	23	274	14	251	1.07e-55	180
Msa0745270	AT1G45474.1	42.188	256	126	9	23	274	14	251	1.07e-55	180
Msa0745270	AT3G61470.1	42.500	240	115	7	41	274	32	254	2.97e-50	166
Msa0745270	AT3G47470.1	43.651	252	97	10	30	274	37	250	2.62e-48	161
Msa0745270	AT1G19150.1	38.168	262	138	7	18	277	31	270	3.68e-46	156
Msa0745270	AT3G27690.1	38.028	284	131	14	1	269	1	254	7.72e-39	137
Msa0745270	AT3G27690.2	38.028	284	131	14	1	269	33	286	1.38e-38	137

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Find 118 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCCTTTGTTGTCA+AGG	0.526175	5_1:+66482291	Msa0745270:CDS
AAACCAAGAGGGTTAAATAT+AGG	0.452200	5_1:-66483871	None:intergenic
AAAGCAAAGTCTTTCTTACT+TGG	0.368436	5_1:+66482585	Msa0745270:CDS
AACACAGAAGATTCCAAGAT+TGG	0.467039	5_1:+66483761	Msa0745270:CDS
AACGGCCGCTTCGCAATGTT+GGG	0.433209	5_1:+66483568	Msa0745270:CDS
AACTATAAGCCAAATGGATC+AGG	0.432629	5_1:-66482071	None:intergenic
AAGACAAGAGAGTGAAGAAA+AGG	0.465124	5_1:-66484170	None:intergenic
AAGCTGAAGGAAGTTAAGAA+TGG	0.479661	5_1:+66483925	Msa0745270:CDS
AATAAATAAAACTTGTAATT+TGG	0.148502	5_1:+66484387	Msa0745270:three_prime_UTR
AATGAATCCACCAGTTCCTT+CGG	0.395198	5_1:-66483512	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTACGTGTATAAACATGGT+TGG	+	chr5_1:66481938-66481957	Msa0745270:five_prime_UTR	30.0%
TGAAGTAACTATAAGCCAAA+TGG	-	chr5_1:66482080-66482099	None:intergenic	30.0%
TTCTTCAAGAATGTAGTAGA+TGG	-	chr5_1:66482124-66482143	None:intergenic	30.0%
ATATTACAACTGTCTCATGT+GGG	+	chr5_1:66482407-66482426	Msa0745270:intron	30.0%
TTGTATATTTGTCAGTTCAG+TGG	-	chr5_1:66482473-66482492	None:intergenic	30.0%
AAAGCAAAGTCTTTCTTACT+TGG	+	chr5_1:66482585-66482604	Msa0745270:CDS	30.0%
ATGTAGATATGCAACTTTGT+TGG	+	chr5_1:66482992-66483011	Msa0745270:intron	30.0%
TTACTTGTGGTAACTTTGTA+TGG	+	chr5_1:66483055-66483074	Msa0745270:intron	30.0%
AAAATCTCAAAAGCCTTCTA+GGG	-	chr5_1:66483103-66483122	None:intergenic	30.0%
AAAAATCTCAAAAGCCTTCT+AGG	-	chr5_1:66483104-66483123	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	66481866	66484461	66481866	ID=Msa0745270;Name=Msa0745270
chr5_1	mRNA	66481866	66484461	66481866	ID=Msa0745270-mRNA-1;Parent=Msa0745270;Name=Msa0745270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=318\|1\|1\|1\|1\|1\|3\|378\|277
chr5_1	exon	66481866	66482336	66481866	ID=Msa0745270-mRNA-1:exon:19771;Parent=Msa0745270-mRNA-1
chr5_1	exon	66482550	66482614	66482550	ID=Msa0745270-mRNA-1:exon:19772;Parent=Msa0745270-mRNA-1
chr5_1	exon	66483468	66484461	66483468	ID=Msa0745270-mRNA-1:exon:19773;Parent=Msa0745270-mRNA-1
chr5_1	five_prime_UTR	66481866	66482183	66481866	ID=Msa0745270-mRNA-1:five_prime_utr;Parent=Msa0745270-mRNA-1
chr5_1	CDS	66482184	66482336	66482184	ID=Msa0745270-mRNA-1:cds;Parent=Msa0745270-mRNA-1
chr5_1	CDS	66482550	66482614	66482550	ID=Msa0745270-mRNA-1:cds;Parent=Msa0745270-mRNA-1
chr5_1	CDS	66483468	66484083	66483468	ID=Msa0745270-mRNA-1:cds;Parent=Msa0745270-mRNA-1
chr5_1	three_prime_UTR	66484084	66484461	66484084	ID=Msa0745270-mRNA-1:three_prime_utr;Parent=Msa0745270-mRNA-1

Gene Sequence

>Msa0745270

ATGGCTACACAAGCTCTAGTGTCGTCATCATCTCTTACTTTTGCAGCTGAGGCTGTGAGACAGAGTCTTGGAGCAAGATCACTCCCATCTTCAATAGGGTCTTCTAGAAAAGGTTCCTTTGTTGTCAAGGCAGCTTCTTCTCCTCCTGCCAAGCAAAATGGAGCAAATAGACAATTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGAAGCCTTCCTGGTGACTTTGGATTTGACCCTCTAGGACTTTCAGATCCCGAAGGAACTGGTGGATTCATTGAGCCAAGATGGTTAGCATATGGCGAGATAATCAACGGCCGCTTCGCAATGTTGGGAGCAGCCGGAGCTATAGCACCTGAAATTCTCGGCAAAGCAGGTTTAATTCCCGCGGAAACAGCACTCCCTTGGTTCCAAACCGGCGTGATTCCACCTGCAGGAACATACAACTACTGGGCAGATAACTACACACTCTTTGTGATGGAAATGGCATTCATGGGATTTGCAGAACACAGAAGATTCCAAGATTGGTACAATCCTGGCTCCATGGGAAAACAATACTTCTTAGGACTTGAGAAAGGTCTTGGAGGTTCCGGCGAACCAGCTTACCCTGGTGGACCTATATTTAACCCTCTTGGTTTTGGTAAAGATGAGAAATCATTGAAGGAGTTAAAGCTGAAGGAAGTTAAGAATGGAAGGTTAGCTATGTTGGCAATATTGGGTTACTTTGTTCAAGCTCTTGTTACAGGAGTTGGACCATACCAAAACCTCTTAGATCATCTGGCTGACCCTGTCAACAACAACATCTTGACCAGTCTCAAGTTCCACTAA

Protein sequence

>Msa0745270

MATQALVSSSSLTFAAEAVRQSLGARSLPSSIGSSRKGSFVVKAASSPPAKQNGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVNNNILTSLKFH*