AlfalfaGEDB | Msa0704680

M. sativa cultivar zhongmu-4 / Msa0704680

KEGG: K14431
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704680	XP_003630093.1	98.324	358	6	0	1	358	1	358	0.0	736

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704680	sp\|Q39237\|TGA1_ARATH	60.383	366	132	5	4	357	3	367	2.77e-155	443

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704680	G7LB89	98.324	358	6	0	1	358	1	358	0.0	736

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TFs/TRs:

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Gene ID	Type	Classification
Msa0704680	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0043740	Msa0704680	0.826278	2.961457e-54	-8.615850e-47
Msa0051960	Msa0704680	0.813890	2.035792e-51	-8.615850e-47
Msa0090090	Msa0704680	0.838570	2.659346e-57	-8.615850e-47
Msa0101960	Msa0704680	0.817486	3.216921e-52	-8.615850e-47
Msa0129770	Msa0704680	0.803440	3.482084e-49	-8.615850e-47
Msa0137560	Msa0704680	0.835637	1.494283e-56	-8.615850e-47
Msa0182560	Msa0704680	0.801787	7.635919e-49	-8.615850e-47
Msa0296900	Msa0704680	0.806561	7.750056e-50	-8.615850e-47
Msa0307420	Msa0704680	0.997133	2.025952e-237	-8.615850e-47
Msa0335080	Msa0704680	0.805344	1.396905e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704680	MtrunA17_Chr8g0382861	98.324	358	6	0	1	358	1	358	0.0	736
Msa0704680	MtrunA17_Chr3g0124601	68.785	362	105	4	4	358	3	363	0.0	510
Msa0704680	MtrunA17_Chr3g0115371	45.821	347	181	3	15	354	1	347	3.54e-102	305
Msa0704680	MtrunA17_Chr5g0424861	47.839	347	173	5	15	353	1	347	1.47e-98	296
Msa0704680	MtrunA17_Chr8g0353501	52.234	291	125	4	75	356	181	466	3.66e-94	288
Msa0704680	MtrunA17_Chr7g0256211	51.546	291	127	4	75	356	167	452	4.14e-93	285
Msa0704680	MtrunA17_Chr2g0321431	50.526	285	129	4	75	356	194	469	2.03e-90	280
Msa0704680	MtrunA17_Chr7g0258321	45.425	306	159	3	59	356	158	463	9.60e-88	272
Msa0704680	MtrunA17_Chr5g0422771	48.797	291	137	3	74	356	178	464	1.50e-86	269
Msa0704680	MtrunA17_Chr1g0174701	41.333	375	185	8	3	356	146	506	2.26e-86	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704680	AT5G65210.5	60.383	366	132	5	4	357	3	367	2.82e-156	443
Msa0704680	AT5G65210.7	60.383	366	132	5	4	357	3	367	2.82e-156	443
Msa0704680	AT5G65210.3	60.383	366	132	5	4	357	3	367	2.82e-156	443
Msa0704680	AT5G65210.1	60.383	366	132	5	4	357	3	367	2.82e-156	443
Msa0704680	AT5G65210.2	60.383	366	132	5	4	357	3	367	2.82e-156	443
Msa0704680	AT5G65210.4	60.383	366	132	5	4	357	3	367	2.82e-156	443
Msa0704680	AT5G10030.5	61.264	364	128	5	4	357	3	363	9.81e-156	442
Msa0704680	AT5G10030.3	61.264	364	128	5	4	357	3	363	9.81e-156	442
Msa0704680	AT5G10030.1	61.264	364	128	5	4	357	3	363	9.81e-156	442
Msa0704680	AT5G10030.4	61.264	364	128	5	4	357	3	363	9.81e-156	442

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Find 98 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGCATCTTCTGCTTGT+CGG	0.484492	4_4:-77147456	None:intergenic
AAAGTTTGCTCAAATCCCTT+AGG	0.521782	4_4:-77147955	None:intergenic
AAATTGCAGGGATTGTATAT+TGG	0.363352	4_4:+77146088	Msa0704680:intron
AACCATTGACAGAGGAACAA+CGG	0.614266	4_4:+77147404	Msa0704680:CDS
AACCGTTGTTCCTCTGTCAA+TGG	0.441867	4_4:-77147406	None:intergenic
AACGTTAACACTTGATAAGC+TGG	0.424854	4_4:-77148068	None:intergenic
AAGAACCAAGTACGAGAAAG+AGG	0.504303	4_4:+77144570	Msa0704680:five_prime_UTR
AATAGAGAGGCTGGAAGCTC+TGG	0.410741	4_4:+77147573	Msa0704680:CDS
AATGGTTTGCGTTGAGAATT+TGG	0.249237	4_4:+77144418	Msa0704680:five_prime_UTR
ACAAATTGAGAAGATGATGA+AGG	0.553463	4_4:-77144853	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAGATTGAATTGGTTAA+TGG	+	chr4_4:77144400-77144419	Msa0704680:five_prime_UTR	30.0%
TGTTTATATGACTAAATGGC+AGG	+	chr4_4:77144801-77144820	Msa0704680:intron	30.0%
ACAAATTGAGAAGATGATGA+AGG	-	chr4_4:77144856-77144875	None:intergenic	30.0%
CCATATAGTAAATTGGTGTA+TGG	-	chr4_4:77144908-77144927	None:intergenic	30.0%
CCATACACCAATTTACTATA+TGG	+	chr4_4:77144905-77144924	Msa0704680:CDS	30.0%
GTTCTTCCCATATAGTAAAT+TGG	-	chr4_4:77144915-77144934	None:intergenic	30.0%
GAAGAACATTTCAAGAGTAA+TGG	+	chr4_4:77144928-77144947	Msa0704680:CDS	30.0%
AGCTAACACAGTTACTAATA+AGG	+	chr4_4:77145214-77145233	Msa0704680:CDS	30.0%
TCCATACATGTTTGATATGA+CGG	-	chr4_4:77145372-77145391	None:intergenic	30.0%
TTGAACTTAACATTGCACAT+GGG	-	chr4_4:77145413-77145432	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	77144389	77148282	77144389	ID=Msa0704680;Name=Msa0704680
chr4_4	mRNA	77144389	77148282	77144389	ID=Msa0704680-mRNA-1;Parent=Msa0704680;Name=Msa0704680-mRNA-1;_AED=0.18;_eAED=0.18;_QI=306\|1\|1\|1\|0.87\|0.77\|9\|276\|358
chr4_4	exon	77144389	77144670	77144389	ID=Msa0704680-mRNA-1:exon:24348;Parent=Msa0704680-mRNA-1
chr4_4	exon	77144823	77144993	77144823	ID=Msa0704680-mRNA-1:exon:24349;Parent=Msa0704680-mRNA-1
chr4_4	exon	77145158	77145235	77145158	ID=Msa0704680-mRNA-1:exon:24350;Parent=Msa0704680-mRNA-1
chr4_4	exon	77145782	77145841	77145782	ID=Msa0704680-mRNA-1:exon:24351;Parent=Msa0704680-mRNA-1
chr4_4	exon	77145918	77145992	77145918	ID=Msa0704680-mRNA-1:exon:24352;Parent=Msa0704680-mRNA-1
chr4_4	exon	77146097	77146160	77146097	ID=Msa0704680-mRNA-1:exon:24353;Parent=Msa0704680-mRNA-1
chr4_4	exon	77147015	77147286	77147015	ID=Msa0704680-mRNA-1:exon:24354;Parent=Msa0704680-mRNA-1
chr4_4	exon	77147385	77147612	77147385	ID=Msa0704680-mRNA-1:exon:24355;Parent=Msa0704680-mRNA-1
chr4_4	exon	77147854	77148282	77147854	ID=Msa0704680-mRNA-1:exon:24356;Parent=Msa0704680-mRNA-1
chr4_4	five_prime_UTR	77144389	77144670	77144389	ID=Msa0704680-mRNA-1:five_prime_utr;Parent=Msa0704680-mRNA-1
chr4_4	five_prime_UTR	77144823	77144846	77144823	ID=Msa0704680-mRNA-1:five_prime_utr;Parent=Msa0704680-mRNA-1
chr4_4	CDS	77144847	77144993	77144847	ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1
chr4_4	CDS	77145158	77145235	77145158	ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1
chr4_4	CDS	77145782	77145841	77145782	ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1
chr4_4	CDS	77145918	77145992	77145918	ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1
chr4_4	CDS	77146097	77146160	77146097	ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1
chr4_4	CDS	77147015	77147286	77147015	ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1
chr4_4	CDS	77147385	77147612	77147385	ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1
chr4_4	CDS	77147854	77148006	77147854	ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1
chr4_4	three_prime_UTR	77148007	77148282	77148007	ID=Msa0704680-mRNA-1:three_prime_utr;Parent=Msa0704680-mRNA-1

Gene Sequence

>Msa0704680

ATGGATCCTTCATCATCTTCTCAATTTGTTTCCTCAAGAAATATTGGTGTATATGATCCCATACACCAATTTACTATATGGGAAGAACATTTCAAGAGTAATGGTGATACAAGTGTATATGAACCTGAAATGAAGTTAAATAATCAGTCAGAGGATGCTTCTTTTGGAATATTGGGAACATCTATCAAGTATGACCACCAAGAAGCTAACACAGTTACTAATAAGATGCAAAGACGTCTCGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATACAACAGTTAGAATCGTGTCGTTTAAAGCTGTTACAGGTAGAGCAAGAGCTAGATCATACAAAACAGGGATTGTATATTGGTGGTGGATTGGATTCTAATAATTTAGGTTTTGCTGGCTCTGTAAATTCAGAAATAACAACTTTTAAGATGGAGTATGAACACTGGGTGGAAGACCTAAACAGACAAATGTTGGAATTGAAAGGTGCTTTAAGTGCTCATATCAGTGATATACAAATTGGGGAACTTGTAAATGGCCTCATGAATCACTATTTCAAACTATTTTGCATGAAATCTGATGCTGCAAAAGTAGATGTTTTCTATGTTATCACTGGCATGTGGAAAACAACAGCTGAAGGGTTTTTCTTGTGGATTGGAGGTTTTCGACCCTCCGAACTTCTAAAGGTTCTGGTCCCTTTAATTGAACCATTGACAGAGGAACAACGGTTTGATGCCTATAATCTTGAGAAGTCATGCCGACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTACAGGGAATGCTTGTTGACACAGTTGCAGCAGGACAACTCGTTGAAGGAACTTACATTCCACAGATGGATATTGCAATAGAGAGGCTGGAAGCTCTGGCTAGCTTTGTGAACCAGGCTGATCATCTTCGACAGGAAACGTTGCAACAGATGTCTCGAATACTTACCGTACGTCAAACTGCTCGATGGCTGCTTGCTTTGGGTGAATACTTTCAACGCCTAAGGGATTTGAGCAAACTTTGGACCAATCGTCCTCGTGAACCTGCATAG

Protein sequence

>Msa0704680

MDPSSSSQFVSSRNIGVYDPIHQFTIWEEHFKSNGDTSVYEPEMKLNNQSEDASFGILGTSIKYDHQEANTVTNKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLLQVEQELDHTKQGLYIGGGLDSNNLGFAGSVNSEITTFKMEYEHWVEDLNRQMLELKGALSAHISDIQIGELVNGLMNHYFKLFCMKSDAAKVDVFYVITGMWKTTAEGFFLWIGGFRPSELLKVLVPLIEPLTEEQRFDAYNLEKSCRQAEDALSQGMEKLQGMLVDTVAAGQLVEGTYIPQMDIAIERLEALASFVNQADHLRQETLQQMSRILTVRQTARWLLALGEYFQRLRDLSKLWTNRPREPA*