Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704680 | XP_003630093.1 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704680 | sp|Q39237|TGA1_ARATH | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.77e-155 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704680 | G7LB89 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0704680 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043740 | Msa0704680 | 0.826278 | 2.961457e-54 | -8.615850e-47 |
| Msa0051960 | Msa0704680 | 0.813890 | 2.035792e-51 | -8.615850e-47 |
| Msa0090090 | Msa0704680 | 0.838570 | 2.659346e-57 | -8.615850e-47 |
| Msa0101960 | Msa0704680 | 0.817486 | 3.216921e-52 | -8.615850e-47 |
| Msa0608980 | Msa0704680 | 0.800534 | 1.377882e-48 | -8.615850e-47 |
| Msa0619310 | Msa0704680 | 0.911576 | 5.202736e-83 | -8.615850e-47 |
| Msa0635270 | Msa0704680 | 0.810619 | 1.053220e-50 | -8.615850e-47 |
| Msa0654640 | Msa0704680 | 0.810136 | 1.339091e-50 | -8.615850e-47 |
| Msa0704680 | Msa0764070 | 0.801163 | 1.025214e-48 | -8.615850e-47 |
| Msa0704680 | Msa0775160 | 0.802063 | 6.701572e-49 | -8.615850e-47 |
| Msa0704680 | Msa0790920 | 0.804056 | 2.594056e-49 | -8.615850e-47 |
| Msa0704680 | Msa0805890 | 0.808860 | 2.516262e-50 | -8.615850e-47 |
| Msa0704680 | Msa1074200 | 0.803211 | 3.885215e-49 | -8.615850e-47 |
| Msa0704680 | Msa1114670 | 0.812570 | 3.967844e-51 | -8.615850e-47 |
| Msa0704680 | Msa1116840 | 0.820082 | 8.276697e-53 | -8.615850e-47 |
| Msa0704680 | Msa1159170 | 0.825770 | 3.911509e-54 | -8.615850e-47 |
| Msa0704680 | Msa1256060 | 0.839395 | 1.625945e-57 | -8.615850e-47 |
| Msa0704680 | Msa1306830 | 0.826700 | 2.349274e-54 | -8.615850e-47 |
| Msa0704680 | Msa1362850 | 0.802972 | 4.353589e-49 | -8.615850e-47 |
| Msa0704680 | Msa1395250 | 0.805914 | 1.060527e-49 | -8.615850e-47 |
| Msa0704680 | Msa1447870 | 0.804977 | 1.666995e-49 | -8.615850e-47 |
| Msa0704680 | Msa1451990 | 0.804852 | 1.770315e-49 | -8.615850e-47 |
| Msa0129770 | Msa0704680 | 0.803440 | 3.482084e-49 | -8.615850e-47 |
| Msa0137560 | Msa0704680 | 0.835637 | 1.494283e-56 | -8.615850e-47 |
| Msa0182560 | Msa0704680 | 0.801787 | 7.635919e-49 | -8.615850e-47 |
| Msa0296900 | Msa0704680 | 0.806561 | 7.750056e-50 | -8.615850e-47 |
| Msa0307420 | Msa0704680 | 0.997133 | 2.025952e-237 | -8.615850e-47 |
| Msa0335080 | Msa0704680 | 0.805344 | 1.396905e-49 | -8.615850e-47 |
| Msa0349950 | Msa0704680 | 0.806535 | 7.846770e-50 | -8.615850e-47 |
| Msa0355550 | Msa0704680 | 0.817897 | 2.597662e-52 | -8.615850e-47 |
| Msa0563860 | Msa0704680 | 0.812007 | 5.264793e-51 | -8.615850e-47 |
| Msa0567480 | Msa0704680 | 0.801719 | 7.883873e-49 | -8.615850e-47 |
| Msa0577490 | Msa0704680 | 0.808561 | 2.914992e-50 | -8.615850e-47 |
| Msa0592650 | Msa0704680 | 0.803659 | 3.136413e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704680 | MtrunA17_Chr8g0382861 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 736 |
| Msa0704680 | MtrunA17_Chr3g0124601 | 68.785 | 362 | 105 | 4 | 4 | 358 | 3 | 363 | 0.0 | 510 |
| Msa0704680 | MtrunA17_Chr3g0115371 | 45.821 | 347 | 181 | 3 | 15 | 354 | 1 | 347 | 3.54e-102 | 305 |
| Msa0704680 | MtrunA17_Chr5g0424861 | 47.839 | 347 | 173 | 5 | 15 | 353 | 1 | 347 | 1.47e-98 | 296 |
| Msa0704680 | MtrunA17_Chr8g0353501 | 52.234 | 291 | 125 | 4 | 75 | 356 | 181 | 466 | 3.66e-94 | 288 |
| Msa0704680 | MtrunA17_Chr7g0256211 | 51.546 | 291 | 127 | 4 | 75 | 356 | 167 | 452 | 4.14e-93 | 285 |
| Msa0704680 | MtrunA17_Chr2g0321431 | 50.526 | 285 | 129 | 4 | 75 | 356 | 194 | 469 | 2.03e-90 | 280 |
| Msa0704680 | MtrunA17_Chr7g0258321 | 45.425 | 306 | 159 | 3 | 59 | 356 | 158 | 463 | 9.60e-88 | 272 |
| Msa0704680 | MtrunA17_Chr5g0422771 | 48.797 | 291 | 137 | 3 | 74 | 356 | 178 | 464 | 1.50e-86 | 269 |
| Msa0704680 | MtrunA17_Chr1g0174701 | 41.333 | 375 | 185 | 8 | 3 | 356 | 146 | 506 | 2.26e-86 | 270 |
| Msa0704680 | MtrunA17_Chr4g0026401 | 47.735 | 287 | 139 | 3 | 71 | 356 | 185 | 461 | 8.03e-85 | 265 |
| Msa0704680 | MtrunA17_Chr1g0210151 | 44.828 | 290 | 151 | 4 | 74 | 356 | 53 | 340 | 5.44e-81 | 250 |
| Msa0704680 | MtrunA17_Chr5g0424851 | 50.450 | 222 | 109 | 1 | 133 | 353 | 1 | 222 | 4.65e-67 | 218 |
| Msa0704680 | MtrunA17_Chr5g0424851 | 47.573 | 206 | 108 | 0 | 141 | 346 | 223 | 428 | 3.54e-59 | 197 |
| Msa0704680 | MtrunA17_Chr3g0093451 | 45.342 | 161 | 80 | 4 | 78 | 230 | 49 | 209 | 6.73e-40 | 140 |
| Msa0704680 | MtrunA17_Chr1g0196951 | 33.796 | 216 | 117 | 6 | 129 | 338 | 34 | 229 | 7.92e-30 | 114 |
| Msa0704680 | MtrunA17_Chr8g0384821 | 25.806 | 248 | 149 | 5 | 133 | 345 | 2 | 249 | 1.26e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704680 | AT5G65210.5 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0704680 | AT5G65210.7 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0704680 | AT5G65210.3 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0704680 | AT5G65210.1 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0704680 | AT5G65210.2 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0704680 | AT5G65210.4 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0704680 | AT5G10030.5 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0704680 | AT5G10030.3 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0704680 | AT5G10030.1 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0704680 | AT5G10030.4 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0704680 | AT5G10030.2 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0704680 | AT5G65210.6 | 65.646 | 294 | 98 | 2 | 67 | 357 | 4 | 297 | 9.37e-139 | 396 |
| Msa0704680 | AT1G77920.1 | 49.867 | 375 | 161 | 5 | 1 | 357 | 2 | 367 | 9.47e-124 | 361 |
| Msa0704680 | AT1G22070.1 | 51.093 | 366 | 157 | 5 | 13 | 356 | 17 | 382 | 5.38e-122 | 357 |
| Msa0704680 | AT5G06950.2 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0704680 | AT5G06950.4 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0704680 | AT5G06950.1 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0704680 | AT5G06950.5 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0704680 | AT5G06950.3 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0704680 | AT1G08320.2 | 50.704 | 284 | 130 | 4 | 75 | 356 | 54 | 329 | 7.96e-93 | 281 |
| Msa0704680 | AT1G08320.5 | 50.704 | 284 | 130 | 4 | 75 | 356 | 54 | 329 | 7.96e-93 | 281 |
| Msa0704680 | AT1G08320.1 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.40e-91 | 282 |
| Msa0704680 | AT1G08320.4 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.40e-91 | 282 |
| Msa0704680 | AT1G08320.3 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.40e-91 | 282 |
| Msa0704680 | AT3G12250.5 | 51.186 | 295 | 131 | 4 | 70 | 356 | 14 | 303 | 6.37e-91 | 275 |
| Msa0704680 | AT3G12250.6 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.47e-91 | 275 |
| Msa0704680 | AT3G12250.2 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.47e-91 | 275 |
| Msa0704680 | AT3G12250.7 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.47e-91 | 275 |
| Msa0704680 | AT3G12250.1 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.47e-91 | 275 |
| Msa0704680 | AT3G12250.3 | 51.186 | 295 | 131 | 4 | 70 | 356 | 35 | 324 | 1.53e-90 | 275 |
| Msa0704680 | AT3G12250.4 | 48.589 | 319 | 143 | 5 | 54 | 356 | 42 | 355 | 3.98e-90 | 275 |
| Msa0704680 | AT5G06960.3 | 50.865 | 289 | 131 | 3 | 75 | 356 | 26 | 310 | 2.33e-89 | 271 |
| Msa0704680 | AT5G06960.2 | 50.865 | 289 | 131 | 3 | 75 | 356 | 46 | 330 | 2.40e-89 | 272 |
| Msa0704680 | AT5G06960.1 | 50.865 | 289 | 131 | 3 | 75 | 356 | 46 | 330 | 2.40e-89 | 272 |
| Msa0704680 | AT5G06839.3 | 43.567 | 342 | 167 | 5 | 41 | 356 | 117 | 458 | 1.95e-85 | 266 |
| Msa0704680 | AT5G06839.1 | 45.779 | 308 | 151 | 4 | 65 | 356 | 108 | 415 | 2.85e-85 | 264 |
| Msa0704680 | AT5G06839.2 | 44.660 | 309 | 154 | 3 | 65 | 356 | 108 | 416 | 1.71e-83 | 259 |
| Msa0704680 | AT1G68640.1 | 43.182 | 308 | 166 | 3 | 56 | 356 | 147 | 452 | 7.96e-75 | 238 |
| Msa0704680 | AT1G58330.1 | 26.906 | 223 | 146 | 6 | 139 | 346 | 3 | 223 | 2.77e-14 | 72.0 |
Find 98 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCAGTGATATACAAAT+TGG | 0.178312 | 4_4:+77147101 | Msa0704680:CDS |
| CATAATCACCTATTCATAAA+TGG | 0.187077 | 4_4:-77148159 | None:intergenic |
| TGATTATTTAACTTCATTTC+AGG | 0.206692 | 4_4:-77144970 | None:intergenic |
| GGATTGGATTCTAATAATTT+AGG | 0.214016 | 4_4:+77146115 | Msa0704680:CDS |
| TAAGAGTCGTTTGAAGAAAA+AGG | 0.214551 | 4_4:+77145820 | Msa0704680:CDS |
| TAGCTCCATGATCATGATTA+TGG | 0.229163 | 4_4:+77148044 | Msa0704680:three_prime_UTR |
| TCTGTCAATGGTTCAATTAA+AGG | 0.231131 | 4_4:-77147394 | None:intergenic |
| CCATACACCAATTTACTATA+TGG | 0.242264 | 4_4:+77144905 | Msa0704680:CDS |
| GAAGAGATTGAATTGGTTAA+TGG | 0.243682 | 4_4:+77144400 | Msa0704680:five_prime_UTR |
| ACATAACAGCTTTGAACTAT+TGG | 0.245284 | 4_4:+77144611 | Msa0704680:five_prime_UTR |
| AATGGTTTGCGTTGAGAATT+TGG | 0.249237 | 4_4:+77144418 | Msa0704680:five_prime_UTR |
| TGCTCGATGGCTGCTTGCTT+TGG | 0.257053 | 4_4:+77147916 | Msa0704680:CDS |
| GTTCTTCCCATATAGTAAAT+TGG | 0.257991 | 4_4:-77144912 | None:intergenic |
| CATTTATGAATAGGTGATTA+TGG | 0.271786 | 4_4:+77148160 | Msa0704680:three_prime_UTR |
| TAGTAACTGTGTTAGCTTCT+TGG | 0.278886 | 4_4:-77145208 | None:intergenic |
| ATTCCAACATTTGTCTGTTT+AGG | 0.286691 | 4_4:-77147058 | None:intergenic |
| TAGTCAGAGGATGCTTCTTT+TGG | 0.297753 | 4_4:+77145155 | Msa0704680:intron |
| CAAATTGGGGAACTTGTAAA+TGG | 0.313309 | 4_4:+77147116 | Msa0704680:CDS |
| ATGTCCAGGGTCTCGGTTGC+TGG | 0.320409 | 4_4:+77148100 | Msa0704680:three_prime_UTR |
| TTTGTTTCCTCAAGAAATAT+TGG | 0.341373 | 4_4:+77144871 | Msa0704680:CDS |
| TTTGCTGGCTCTGTAAATTC+AGG | 0.350309 | 4_4:+77146139 | Msa0704680:CDS |
| GCTGAAGAATAAACTTGTTT+CGG | 0.353601 | 4_4:-77148269 | None:intergenic |
| GCATGACTTCTCAAGATTAT+AGG | 0.355362 | 4_4:-77147434 | None:intergenic |
| AAATTGCAGGGATTGTATAT+TGG | 0.363352 | 4_4:+77146088 | Msa0704680:intron |
| AGCTAACACAGTTACTAATA+AGG | 0.363384 | 4_4:+77145214 | Msa0704680:CDS |
| GTGTCGTTTAAAGCTGTTAC+AGG | 0.364560 | 4_4:+77145941 | Msa0704680:CDS |
| GCTCGATGGCTGCTTGCTTT+GGG | 0.374474 | 4_4:+77147917 | Msa0704680:CDS |
| GATTACCTCTTTCTCGTACT+TGG | 0.376739 | 4_4:-77144575 | None:intergenic |
| TGTTCTATAGACAAACTAAT+TGG | 0.379987 | 4_4:-77144825 | None:intergenic |
| CCATATAGTAAATTGGTGTA+TGG | 0.382687 | 4_4:-77144905 | None:intergenic |
| TGAAATGAAGTTAAATAATC+AGG | 0.391737 | 4_4:+77144972 | Msa0704680:CDS |
| ATAACTCCCCATTTATGAAT+AGG | 0.399336 | 4_4:+77148151 | Msa0704680:three_prime_UTR |
| GCATGATTGGAGCTGGCAAT+TGG | 0.404097 | 4_4:+77144378 | None:intergenic |
| ATTGTATATTGGTGGTGGAT+TGG | 0.406379 | 4_4:+77146099 | Msa0704680:CDS |
| ATAATCACCTATTCATAAAT+GGG | 0.406860 | 4_4:-77148158 | None:intergenic |
| AATAGAGAGGCTGGAAGCTC+TGG | 0.410741 | 4_4:+77147573 | Msa0704680:CDS |
| AGGTGTTACCTTTAGAAGTT+CGG | 0.411150 | 4_4:-77147273 | None:intergenic |
| ATATCAGTGATATACAAATT+GGG | 0.413722 | 4_4:+77147102 | Msa0704680:CDS |
| CTGTCAATGGTTCAATTAAA+GGG | 0.420015 | 4_4:-77147393 | None:intergenic |
| AACGTTAACACTTGATAAGC+TGG | 0.424854 | 4_4:-77148068 | None:intergenic |
| TCGACCCTCCGAACTTCTAA+AGG | 0.428847 | 4_4:+77147265 | Msa0704680:CDS |
| GCAATTGGAAGAGATTGAAT+TGG | 0.439614 | 4_4:+77144393 | Msa0704680:five_prime_UTR |
| AACCGTTGTTCCTCTGTCAA+TGG | 0.441867 | 4_4:-77147406 | None:intergenic |
| TAAGGGATTTGAGCAAACTT+TGG | 0.444298 | 4_4:+77147957 | Msa0704680:CDS |
| TGTTGTGCTCTTTCTATGAT+CGG | 0.445506 | 4_4:+77144649 | Msa0704680:five_prime_UTR |
| GTGAATACTTTCAACGCCTA+AGG | 0.464354 | 4_4:+77147939 | Msa0704680:CDS |
| CATACACCAATTTACTATAT+GGG | 0.478931 | 4_4:+77144906 | Msa0704680:CDS |
| AGATGCCCTTTCACAAGGTA+TGG | 0.480625 | 4_4:+77147468 | Msa0704680:CDS |
| AGAGCTAGATCATACAAAAC+AGG | 0.481991 | 4_4:+77145971 | Msa0704680:CDS |
| GGATATTGCAATAGAGAGGC+TGG | 0.484290 | 4_4:+77147564 | Msa0704680:CDS |
| AAAGGGCATCTTCTGCTTGT+CGG | 0.484492 | 4_4:-77147456 | None:intergenic |
| TAACTGTGTTAGCTTCTTGG+TGG | 0.484546 | 4_4:-77145205 | None:intergenic |
| TCTGGCTAGCTTTGTGAACC+AGG | 0.487895 | 4_4:+77147591 | Msa0704680:CDS |
| CAGGGATTGTATATTGGTGG+TGG | 0.489623 | 4_4:+77146094 | Msa0704680:intron |
| AAGAACCAAGTACGAGAAAG+AGG | 0.504303 | 4_4:+77144570 | Msa0704680:five_prime_UTR |
| CTGGGCCATAATCATGATCA+TGG | 0.510413 | 4_4:-77148049 | None:intergenic |
| CTTGTTGACACAGTTGCAGC+AGG | 0.514923 | 4_4:+77147508 | Msa0704680:CDS |
| CATATAGTAAATTGGTGTAT+GGG | 0.519743 | 4_4:-77144904 | None:intergenic |
| AAAGTTTGCTCAAATCCCTT+AGG | 0.521782 | 4_4:-77147955 | None:intergenic |
| AGACCTAAACAGACAAATGT+TGG | 0.522384 | 4_4:+77147055 | Msa0704680:CDS |
| TGCAGGTTCACGAGGACGAT+TGG | 0.528063 | 4_4:-77147981 | None:intergenic |
| TGGTTCTTCCTCGATTTACT+CGG | 0.543111 | 4_4:-77144555 | None:intergenic |
| TGAATACTTTCAACGCCTAA+GGG | 0.549102 | 4_4:+77147940 | Msa0704680:CDS |
| ATGTGGAAAACAACAGCTGA+AGG | 0.550259 | 4_4:+77147218 | Msa0704680:CDS |
| ACAAATTGAGAAGATGATGA+AGG | 0.553463 | 4_4:-77144853 | None:intergenic |
| AGACAAATGTTGGAATTGAA+AGG | 0.555362 | 4_4:+77147065 | Msa0704680:CDS |
| TTTGCCAGCAACCGAGACCC+TGG | 0.555908 | 4_4:-77148104 | None:intergenic |
| ACAGGCTGATCATCTTCGAC+AGG | 0.558370 | 4_4:+77147850 | Msa0704680:intron |
| GAAGAACATTTCAAGAGTAA+TGG | 0.562707 | 4_4:+77144928 | Msa0704680:CDS |
| GCAGCAGGACAACTCGTTGA+AGG | 0.566836 | 4_4:+77147523 | Msa0704680:CDS |
| CTCTTGCATGAAGACTATGC+AGG | 0.569640 | 4_4:-77147998 | None:intergenic |
| AGGAACTTACATTCCACAGA+TGG | 0.575188 | 4_4:+77147543 | Msa0704680:CDS |
| CCGTACGTCAAACTGCTCGA+TGG | 0.578154 | 4_4:+77147903 | Msa0704680:CDS |
| TATCAGTGATATACAAATTG+GGG | 0.581840 | 4_4:+77147103 | Msa0704680:CDS |
| ATATACACCAATATTTCTTG+AGG | 0.587022 | 4_4:-77144878 | None:intergenic |
| TTGCAGGGATTGTATATTGG+TGG | 0.592067 | 4_4:+77146091 | Msa0704680:intron |
| TAAGATGGAGTATGAACACT+GGG | 0.600728 | 4_4:+77147028 | Msa0704680:CDS |
| ACGTTAACACTTGATAAGCT+GGG | 0.601137 | 4_4:-77148067 | None:intergenic |
| TGTTACCTTTAGAAGTTCGG+AGG | 0.601165 | 4_4:-77147270 | None:intergenic |
| TTAAGATGGAGTATGAACAC+TGG | 0.603260 | 4_4:+77147027 | Msa0704680:CDS |
| ATTAGTTTGTCTATAGAACA+TGG | 0.607742 | 4_4:+77144828 | Msa0704680:exon |
| AACCATTGACAGAGGAACAA+CGG | 0.614266 | 4_4:+77147404 | Msa0704680:CDS |
| AGCAACCGAGACCCTGGACA+TGG | 0.617265 | 4_4:-77148098 | None:intergenic |
| GCAGAAGATGCCCTTTCACA+AGG | 0.620831 | 4_4:+77147463 | Msa0704680:CDS |
| TTTAATTGAACCATTGACAG+AGG | 0.625048 | 4_4:+77147396 | Msa0704680:CDS |
| TCTATGTTATCACTGGCATG+TGG | 0.630097 | 4_4:+77147201 | Msa0704680:CDS |
| CCATCGAGCAGTTTGACGTA+CGG | 0.630335 | 4_4:-77147903 | None:intergenic |
| TCTATTGCAATATCCATCTG+TGG | 0.636700 | 4_4:-77147556 | None:intergenic |
| TTTATCTTCCGAGTAAATCG+AGG | 0.639567 | 4_4:+77144547 | Msa0704680:five_prime_UTR |
| GTTACCTTTAGAAGTTCGGA+GGG | 0.640489 | 4_4:-77147269 | None:intergenic |
| GAAGACTATGCAGGTTCACG+AGG | 0.645466 | 4_4:-77147989 | None:intergenic |
| AGATGGATATTGCAATAGAG+AGG | 0.647680 | 4_4:+77147560 | Msa0704680:CDS |
| TAATCACCTATTCATAAATG+GGG | 0.647734 | 4_4:-77148157 | None:intergenic |
| TGTGGAAAACAACAGCTGAA+GGG | 0.647786 | 4_4:+77147219 | Msa0704680:CDS |
| GTTTGAAATAGTGATTCATG+AGG | 0.660995 | 4_4:-77147139 | None:intergenic |
| ACGTCTCGCACAAAATCGAG+AGG | 0.680873 | 4_4:+77145790 | Msa0704680:CDS |
| GATGGAGTATGAACACTGGG+TGG | 0.682481 | 4_4:+77147031 | Msa0704680:CDS |
| TTGATGGTGAGTCACCAAGG+TGG | 0.728144 | 4_4:+77144452 | Msa0704680:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAAATTTAGTAAACT+TGG | - | chr4_4:77145005-77145024 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATAAAGCAAAA+AGG | - | chr4_4:77146386-77146405 | None:intergenic | 15.0% |
| !!! | TTGATATATAATATTAGCTT+TGG | + | chr4_4:77146909-77146928 | Msa0704680:intron | 15.0% |
| !!! | TGATATATAATATTAGCTTT+GGG | + | chr4_4:77146910-77146929 | Msa0704680:intron | 15.0% |
| !! | TTGACAATAATAAACTTAAT+TGG | - | chr4_4:77147830-77147849 | None:intergenic | 15.0% |
| !! | TGATTGTTTATATGACTAAA+TGG | + | chr4_4:77144797-77144816 | Msa0704680:intron | 20.0% |
| !!! | TGATTATTTAACTTCATTTC+AGG | - | chr4_4:77144973-77144992 | None:intergenic | 20.0% |
| !! | TGAAATGAAGTTAAATAATC+AGG | + | chr4_4:77144972-77144991 | Msa0704680:CDS | 20.0% |
| !! | CCTTTAACAAAATTTCAAAA+TGG | - | chr4_4:77145542-77145561 | None:intergenic | 20.0% |
| !!! | CCATTTTGAAATTTTGTTAA+AGG | + | chr4_4:77145539-77145558 | Msa0704680:intron | 20.0% |
| !!! | AAACTTTGAGAAAATTCTTT+AGG | + | chr4_4:77146324-77146343 | Msa0704680:intron | 20.0% |
| !! | ACAAAAGCAACATTAATTAA+AGG | - | chr4_4:77146537-77146556 | None:intergenic | 20.0% |
| !! | AGTAACAAAATTTATTAGAG+AGG | + | chr4_4:77146676-77146695 | Msa0704680:intron | 20.0% |
| !! | GTAACAAAATTTATTAGAGA+GGG | + | chr4_4:77146677-77146696 | Msa0704680:intron | 20.0% |
| !!! | GAAATTTTGGAAGAAATTAT+TGG | - | chr4_4:77146759-77146778 | None:intergenic | 20.0% |
| !!! | TCTATTCTAAAACTAGTTTT+TGG | + | chr4_4:77146968-77146987 | Msa0704680:intron | 20.0% |
| !!! | AGTTGTTATTTCTGTAAATT+AGG | - | chr4_4:77147006-77147025 | None:intergenic | 20.0% |
| !!! | AGAAATAACAACTTTTAAGA+TGG | + | chr4_4:77147013-77147032 | Msa0704680:intron | 20.0% |
| !! | ATATCAGTGATATACAAATT+GGG | + | chr4_4:77147102-77147121 | Msa0704680:CDS | 20.0% |
| !! | AATATATAACATACATTACC+TGG | - | chr4_4:77147612-77147631 | None:intergenic | 20.0% |
| !! | CACAAATTACCAAATTAAAA+AGG | + | chr4_4:77147778-77147797 | Msa0704680:intron | 20.0% |
| !!! | CTAGTTTAACCTTTTTAATT+TGG | - | chr4_4:77147790-77147809 | None:intergenic | 20.0% |
| !! | CAAATTAAAAAGGTTAAACT+AGG | + | chr4_4:77147788-77147807 | Msa0704680:intron | 20.0% |
| !! | TAAGTTTATTATTGTCAAAC+AGG | + | chr4_4:77147832-77147851 | Msa0704680:intron | 20.0% |
| !! | ATAATCACCTATTCATAAAT+GGG | - | chr4_4:77148161-77148180 | None:intergenic | 20.0% |
| !!! | TTTGGTTCTGTATTTTTTGA+TGG | + | chr4_4:77144436-77144455 | Msa0704680:five_prime_UTR | 25.0% |
| !!! | ATTTGACTTTTGCTTTTACA+AGG | + | chr4_4:77144735-77144754 | Msa0704680:intron | 25.0% |
| ! | TGTTCTATAGACAAACTAAT+TGG | - | chr4_4:77144828-77144847 | None:intergenic | 25.0% |
| !!! | ATTAGTTTGTCTATAGAACA+TGG | + | chr4_4:77144828-77144847 | Msa0704680:exon | 25.0% |
| ! | TTTGTTTCCTCAAGAAATAT+TGG | + | chr4_4:77144871-77144890 | Msa0704680:CDS | 25.0% |
| ! | ATATACACCAATATTTCTTG+AGG | - | chr4_4:77144881-77144900 | None:intergenic | 25.0% |
| ! | CATATAGTAAATTGGTGTAT+GGG | - | chr4_4:77144907-77144926 | None:intergenic | 25.0% |
| ! | CATACACCAATTTACTATAT+GGG | + | chr4_4:77144906-77144925 | Msa0704680:CDS | 25.0% |
| !!! | TGTATGGACTATTTTTTACA+CGG | + | chr4_4:77145384-77145403 | Msa0704680:intron | 25.0% |
| !! | TCAATCACATTAATCCATTT+TGG | + | chr4_4:77145463-77145482 | Msa0704680:intron | 25.0% |
| !!! | TGCGTTTTTTTATGCTTATA+AGG | + | chr4_4:77145744-77145763 | Msa0704680:intron | 25.0% |
| ! | GATATTGAACAATATGAAGT+AGG | - | chr4_4:77146025-77146044 | None:intergenic | 25.0% |
| ! | GGATTGGATTCTAATAATTT+AGG | + | chr4_4:77146115-77146134 | Msa0704680:CDS | 25.0% |
| !!! | TCTAATAATTTAGGTTTTGC+TGG | + | chr4_4:77146124-77146143 | Msa0704680:CDS | 25.0% |
| !!! | GTTGGTTTGTTATTAAATTC+TGG | + | chr4_4:77146161-77146180 | Msa0704680:intron | 25.0% |
| ! | CAAAAAAGTGATTTCATCAT+AGG | - | chr4_4:77146229-77146248 | None:intergenic | 25.0% |
| !! | CTTACTGCAGATATATATTT+TGG | + | chr4_4:77146402-77146421 | Msa0704680:intron | 25.0% |
| ! | ACATTAATTAAAGGAATGGA+GGG | - | chr4_4:77146528-77146547 | None:intergenic | 25.0% |
| ! | AACATTAATTAAAGGAATGG+AGG | - | chr4_4:77146529-77146548 | None:intergenic | 25.0% |
| ! | AGCAACATTAATTAAAGGAA+TGG | - | chr4_4:77146532-77146551 | None:intergenic | 25.0% |
| ! | CATATCAGTGATATACAAAT+TGG | + | chr4_4:77147101-77147120 | Msa0704680:CDS | 25.0% |
| ! | TATCAGTGATATACAAATTG+GGG | + | chr4_4:77147103-77147122 | Msa0704680:CDS | 25.0% |
| ! | CGTATAATTTAGATTAGATG+AGG | + | chr4_4:77147636-77147655 | Msa0704680:intron | 25.0% |
| !! | TTTGGTAATTTGTGTGTTAA+TGG | - | chr4_4:77147772-77147791 | None:intergenic | 25.0% |
| ! | TAATCACCTATTCATAAATG+GGG | - | chr4_4:77148160-77148179 | None:intergenic | 25.0% |
| ! | CATAATCACCTATTCATAAA+TGG | - | chr4_4:77148162-77148181 | None:intergenic | 25.0% |
| ! | CATTTATGAATAGGTGATTA+TGG | + | chr4_4:77148160-77148179 | Msa0704680:three_prime_UTR | 25.0% |
| GAAGAGATTGAATTGGTTAA+TGG | + | chr4_4:77144400-77144419 | Msa0704680:five_prime_UTR | 30.0% | |
| !! | ACATAACAGCTTTGAACTAT+TGG | + | chr4_4:77144611-77144630 | Msa0704680:five_prime_UTR | 30.0% |
| !!! | CAAGGCATTTTATTGATTCT+TGG | + | chr4_4:77144753-77144772 | Msa0704680:intron | 30.0% |
| TGTTTATATGACTAAATGGC+AGG | + | chr4_4:77144801-77144820 | Msa0704680:intron | 30.0% | |
| ACAAATTGAGAAGATGATGA+AGG | - | chr4_4:77144856-77144875 | None:intergenic | 30.0% | |
| CCATATAGTAAATTGGTGTA+TGG | - | chr4_4:77144908-77144927 | None:intergenic | 30.0% | |
| CCATACACCAATTTACTATA+TGG | + | chr4_4:77144905-77144924 | Msa0704680:CDS | 30.0% | |
| GTTCTTCCCATATAGTAAAT+TGG | - | chr4_4:77144915-77144934 | None:intergenic | 30.0% | |
| GAAGAACATTTCAAGAGTAA+TGG | + | chr4_4:77144928-77144947 | Msa0704680:CDS | 30.0% | |
| !!! | GATGCTTCTTTTGGAATATT+GGG | + | chr4_4:77145164-77145183 | Msa0704680:CDS | 30.0% |
| AGCTAACACAGTTACTAATA+AGG | + | chr4_4:77145214-77145233 | Msa0704680:CDS | 30.0% | |
| ! | TGGGTTGAACAAAATTAATG+TGG | - | chr4_4:77145349-77145368 | None:intergenic | 30.0% |
| TCCATACATGTTTGATATGA+CGG | - | chr4_4:77145372-77145391 | None:intergenic | 30.0% | |
| !!! | GTATGGACTATTTTTTACAC+GGG | + | chr4_4:77145385-77145404 | Msa0704680:intron | 30.0% |
| !!! | TATGGACTATTTTTTACACG+GGG | + | chr4_4:77145386-77145405 | Msa0704680:intron | 30.0% |
| TTGAACTTAACATTGCACAT+GGG | - | chr4_4:77145413-77145432 | None:intergenic | 30.0% | |
| ATTGCTCAATCAGTATTTCA+TGG | + | chr4_4:77145568-77145587 | Msa0704680:intron | 30.0% | |
| CTAAGTTTCTACAAAGTTTG+AGG | - | chr4_4:77145629-77145648 | None:intergenic | 30.0% | |
| !!! | AGCATTTTAGAACCACATTT+TGG | + | chr4_4:77145662-77145681 | Msa0704680:intron | 30.0% |
| TAAGAGTCGTTTGAAGAAAA+AGG | + | chr4_4:77145820-77145839 | Msa0704680:CDS | 30.0% | |
| GAATCAAATGCTTGTTTGTT+TGG | - | chr4_4:77145881-77145900 | None:intergenic | 30.0% | |
| AAATTGCAGGGATTGTATAT+TGG | + | chr4_4:77146088-77146107 | Msa0704680:intron | 30.0% | |
| AACCTACAAAATCAACTACA+AGG | + | chr4_4:77146293-77146312 | Msa0704680:intron | 30.0% | |
| ACCTACAAAATCAACTACAA+GGG | + | chr4_4:77146294-77146313 | Msa0704680:intron | 30.0% | |
| !! | ACTGCAGATATATATTTTGG+TGG | + | chr4_4:77146405-77146424 | Msa0704680:intron | 30.0% |
| TTAATGCAGAGAGAAATGTT+TGG | + | chr4_4:77146641-77146660 | Msa0704680:intron | 30.0% | |
| ! | AGAGAGAAATGTTTGGAATA+AGG | + | chr4_4:77146648-77146667 | Msa0704680:intron | 30.0% |
| TGGATTCAGAGTTTCAAAAT+TGG | - | chr4_4:77146739-77146758 | None:intergenic | 30.0% | |
| ! | TTCCAAAATTTCAAGTAAGC+TGG | + | chr4_4:77146767-77146786 | Msa0704680:intron | 30.0% |
| GAATAGAGTTCAATACAAGA+AGG | - | chr4_4:77146955-77146974 | None:intergenic | 30.0% | |
| ATTCCAACATTTGTCTGTTT+AGG | - | chr4_4:77147061-77147080 | None:intergenic | 30.0% | |
| AGACAAATGTTGGAATTGAA+AGG | + | chr4_4:77147065-77147084 | Msa0704680:CDS | 30.0% | |
| ! | GTTTGAAATAGTGATTCATG+AGG | - | chr4_4:77147142-77147161 | None:intergenic | 30.0% |
| ! | GATGTTTTCTATGTTATCAC+TGG | + | chr4_4:77147194-77147213 | Msa0704680:CDS | 30.0% |
| ! | GTTGATCAAGTATATCGATT+AGG | - | chr4_4:77147296-77147315 | None:intergenic | 30.0% |
| ATCGATATACTTGATCAACA+TGG | + | chr4_4:77147297-77147316 | Msa0704680:intron | 30.0% | |
| TCGATATACTTGATCAACAT+GGG | + | chr4_4:77147298-77147317 | Msa0704680:intron | 30.0% | |
| CTGTCAATGGTTCAATTAAA+GGG | - | chr4_4:77147396-77147415 | None:intergenic | 30.0% | |
| TCTGTCAATGGTTCAATTAA+AGG | - | chr4_4:77147397-77147416 | None:intergenic | 30.0% | |
| TTTAATTGAACCATTGACAG+AGG | + | chr4_4:77147396-77147415 | Msa0704680:CDS | 30.0% | |
| ! | TTTTTCCATACCTTGTGAAA+GGG | - | chr4_4:77147476-77147495 | None:intergenic | 30.0% |
| !! | AGTTTTATCAGAAGTATGCA+TGG | + | chr4_4:77147734-77147753 | Msa0704680:intron | 30.0% |
| ATAACTCCCCATTTATGAAT+AGG | + | chr4_4:77148151-77148170 | Msa0704680:three_prime_UTR | 30.0% | |
| GCAATTGGAAGAGATTGAAT+TGG | + | chr4_4:77144393-77144412 | Msa0704680:five_prime_UTR | 35.0% | |
| ! | AATGGTTTGCGTTGAGAATT+TGG | + | chr4_4:77144418-77144437 | Msa0704680:five_prime_UTR | 35.0% |
| TTTATCTTCCGAGTAAATCG+AGG | + | chr4_4:77144547-77144566 | Msa0704680:five_prime_UTR | 35.0% | |
| TGTTGTGCTCTTTCTATGAT+CGG | + | chr4_4:77144649-77144668 | Msa0704680:five_prime_UTR | 35.0% | |
| !! | TATTGATTCTTGGCAGTTCA+TGG | + | chr4_4:77144763-77144782 | Msa0704680:intron | 35.0% |
| TGCTAAATACCTATAGTCAG+AGG | + | chr4_4:77145142-77145161 | Msa0704680:intron | 35.0% | |
| !!! | GGATGCTTCTTTTGGAATAT+TGG | + | chr4_4:77145163-77145182 | Msa0704680:CDS | 35.0% |
| ! | TAGTAACTGTGTTAGCTTCT+TGG | - | chr4_4:77145211-77145230 | None:intergenic | 35.0% |
| ! | TTGTCGCTTCAACATAATCA+AGG | + | chr4_4:77145321-77145340 | Msa0704680:intron | 35.0% |
| TACATGTTTGATATGACGGT+GGG | - | chr4_4:77145368-77145387 | None:intergenic | 35.0% | |
| ATACATGTTTGATATGACGG+TGG | - | chr4_4:77145369-77145388 | None:intergenic | 35.0% | |
| ACCGTCATATCAAACATGTA+TGG | + | chr4_4:77145368-77145387 | Msa0704680:intron | 35.0% | |
| GTTGAACTTAACATTGCACA+TGG | - | chr4_4:77145414-77145433 | None:intergenic | 35.0% | |
| !! | ATTGGTCGACTTTTCCAAAA+TGG | - | chr4_4:77145480-77145499 | None:intergenic | 35.0% |
| AAAAGTCGACCAATCTGAAA+GGG | + | chr4_4:77145486-77145505 | Msa0704680:intron | 35.0% | |
| TTGAGGCATAAGGAAAGAAT+GGG | - | chr4_4:77145612-77145631 | None:intergenic | 35.0% | |
| ! | TTTGAGGCATAAGGAAAGAA+TGG | - | chr4_4:77145613-77145632 | None:intergenic | 35.0% |
| ! | TCTACAAAGTTTGAGGCATA+AGG | - | chr4_4:77145622-77145641 | None:intergenic | 35.0% |
| ACATCCAAAATTTGGAAGCA+GGG | - | chr4_4:77145718-77145737 | None:intergenic | 35.0% | |
| GTCGTTTGAAGAAAAAGGTT+TGG | + | chr4_4:77145825-77145844 | Msa0704680:intron | 35.0% | |
| AGAGCTAGATCATACAAAAC+AGG | + | chr4_4:77145971-77145990 | Msa0704680:CDS | 35.0% | |
| CATCAAGAGATTGACAAATG+AGG | - | chr4_4:77146063-77146082 | None:intergenic | 35.0% | |
| TCTTGATGCAACAAAATTGC+AGG | + | chr4_4:77146075-77146094 | Msa0704680:intron | 35.0% | |
| CTTGATGCAACAAAATTGCA+GGG | + | chr4_4:77146076-77146095 | Msa0704680:intron | 35.0% | |
| !! | ATTGTATATTGGTGGTGGAT+TGG | + | chr4_4:77146099-77146118 | Msa0704680:CDS | 35.0% |
| TGTCACTGCTCTTATAAATG+TGG | + | chr4_4:77146199-77146218 | Msa0704680:intron | 35.0% | |
| !! | TCCCTTGTAGTTGATTTTGT+AGG | - | chr4_4:77146298-77146317 | None:intergenic | 35.0% |
| AAAAGGACATGCATGCAAAA+AGG | - | chr4_4:77146369-77146388 | None:intergenic | 35.0% | |
| !!! | GCAGATATATATTTTGGTGG+TGG | + | chr4_4:77146408-77146427 | Msa0704680:intron | 35.0% |
| AGTGAGGTCATTGCTAAAAT+AGG | - | chr4_4:77146490-77146509 | None:intergenic | 35.0% | |
| !!! | CTACTCCTGTGGAAATTTTT+TGG | + | chr4_4:77146702-77146721 | Msa0704680:intron | 35.0% |
| TCACACCAAAAAATTTCCAC+AGG | - | chr4_4:77146710-77146729 | None:intergenic | 35.0% | |
| ! | AGCCAGCTTACTTGAAATTT+TGG | - | chr4_4:77146772-77146791 | None:intergenic | 35.0% |
| TTAGACACTACATTCTGTTC+TGG | + | chr4_4:77146886-77146905 | Msa0704680:intron | 35.0% | |
| CAAGAAGGAAAACATACTCA+AGG | - | chr4_4:77146940-77146959 | None:intergenic | 35.0% | |
| TTAAGATGGAGTATGAACAC+TGG | + | chr4_4:77147027-77147046 | Msa0704680:CDS | 35.0% | |
| TAAGATGGAGTATGAACACT+GGG | + | chr4_4:77147028-77147047 | Msa0704680:CDS | 35.0% | |
| AGACCTAAACAGACAAATGT+TGG | + | chr4_4:77147055-77147074 | Msa0704680:CDS | 35.0% | |
| CAAATTGGGGAACTTGTAAA+TGG | + | chr4_4:77147116-77147135 | Msa0704680:CDS | 35.0% | |
| ! | AGGTGTTACCTTTAGAAGTT+CGG | - | chr4_4:77147276-77147295 | None:intergenic | 35.0% |
| CGATATACTTGATCAACATG+GGG | + | chr4_4:77147299-77147318 | Msa0704680:intron | 35.0% | |
| CACAAACATACATTATGCCA+TGG | - | chr4_4:77147352-77147371 | None:intergenic | 35.0% | |
| ATGTTTGTGATGAGATTTGC+AGG | + | chr4_4:77147363-77147382 | Msa0704680:intron | 35.0% | |
| GCATGACTTCTCAAGATTAT+AGG | - | chr4_4:77147437-77147456 | None:intergenic | 35.0% | |
| ! | GTTTTTCCATACCTTGTGAA+AGG | - | chr4_4:77147477-77147496 | None:intergenic | 35.0% |
| ACAAGGTATGGAAAAACTAC+AGG | + | chr4_4:77147480-77147499 | Msa0704680:CDS | 35.0% | |
| CAAGGTATGGAAAAACTACA+GGG | + | chr4_4:77147481-77147500 | Msa0704680:CDS | 35.0% | |
| TCTATTGCAATATCCATCTG+TGG | - | chr4_4:77147559-77147578 | None:intergenic | 35.0% | |
| AGATGGATATTGCAATAGAG+AGG | + | chr4_4:77147560-77147579 | Msa0704680:CDS | 35.0% | |
| TTAGATGAGGTTATGAGTAG+TGG | + | chr4_4:77147649-77147668 | Msa0704680:intron | 35.0% | |
| TAAAACTTATACTCCTGCCA+TGG | - | chr4_4:77147721-77147740 | None:intergenic | 35.0% | |
| TGAATACTTTCAACGCCTAA+GGG | + | chr4_4:77147940-77147959 | Msa0704680:CDS | 35.0% | |
| ! | AAAGTTTGCTCAAATCCCTT+AGG | - | chr4_4:77147958-77147977 | None:intergenic | 35.0% |
| TAAGGGATTTGAGCAAACTT+TGG | + | chr4_4:77147957-77147976 | Msa0704680:CDS | 35.0% | |
| TAGCTCCATGATCATGATTA+TGG | + | chr4_4:77148044-77148063 | Msa0704680:three_prime_UTR | 35.0% | |
| ACGTTAACACTTGATAAGCT+GGG | - | chr4_4:77148070-77148089 | None:intergenic | 35.0% | |
| AACGTTAACACTTGATAAGC+TGG | - | chr4_4:77148071-77148090 | None:intergenic | 35.0% | |
| !!! | TTTTTGATGGTGAGTCACCA+AGG | + | chr4_4:77144449-77144468 | Msa0704680:five_prime_UTR | 40.0% |
| TGGTTCTTCCTCGATTTACT+CGG | - | chr4_4:77144558-77144577 | None:intergenic | 40.0% | |
| AAGAACCAAGTACGAGAAAG+AGG | + | chr4_4:77144570-77144589 | Msa0704680:five_prime_UTR | 40.0% | |
| GATTACCTCTTTCTCGTACT+TGG | - | chr4_4:77144578-77144597 | None:intergenic | 40.0% | |
| !! | AAGAAGCATCCTCTGACTAT+AGG | - | chr4_4:77145154-77145173 | None:intergenic | 40.0% |
| ! | TAGTCAGAGGATGCTTCTTT+TGG | + | chr4_4:77145155-77145174 | Msa0704680:intron | 40.0% |
| ! | TAACTGTGTTAGCTTCTTGG+TGG | - | chr4_4:77145208-77145227 | None:intergenic | 40.0% |
| ! | TTGCTACTTGCTTGATATCG+CGG | + | chr4_4:77145247-77145266 | Msa0704680:intron | 40.0% |
| TATGTTGAAGCGACAAAGTG+CGG | - | chr4_4:77145317-77145336 | None:intergenic | 40.0% | |
| GAAAAGTCGACCAATCTGAA+AGG | + | chr4_4:77145485-77145504 | Msa0704680:intron | 40.0% | |
| TGCAAAGTGAGTCCAAAATG+TGG | - | chr4_4:77145677-77145696 | None:intergenic | 40.0% | |
| CATCCAAAATTTGGAAGCAG+GGG | - | chr4_4:77145717-77145736 | None:intergenic | 40.0% | |
| GACATCCAAAATTTGGAAGC+AGG | - | chr4_4:77145719-77145738 | None:intergenic | 40.0% | |
| ! | GCTTCCAAATTTTGGATGTC+TGG | + | chr4_4:77145719-77145738 | Msa0704680:intron | 40.0% |
| CAAGCCAGACATCCAAAATT+TGG | - | chr4_4:77145726-77145745 | None:intergenic | 40.0% | |
| GATTCCTGACGTTTCATAAC+AGG | + | chr4_4:77145896-77145915 | Msa0704680:intron | 40.0% | |
| !! | GTGTCGTTTAAAGCTGTTAC+AGG | + | chr4_4:77145941-77145960 | Msa0704680:CDS | 40.0% |
| TTGCAGGGATTGTATATTGG+TGG | + | chr4_4:77146091-77146110 | Msa0704680:intron | 40.0% | |
| !! | TTTGCTGGCTCTGTAAATTC+AGG | + | chr4_4:77146139-77146158 | Msa0704680:CDS | 40.0% |
| AATAGGATTTGAGTAGCTGC+TGG | - | chr4_4:77146473-77146492 | None:intergenic | 40.0% | |
| GAGTATCTGAATGTACAGTG+AGG | - | chr4_4:77146506-77146525 | None:intergenic | 40.0% | |
| TCTATGTTATCACTGGCATG+TGG | + | chr4_4:77147201-77147220 | Msa0704680:CDS | 40.0% | |
| ATGTGGAAAACAACAGCTGA+AGG | + | chr4_4:77147218-77147237 | Msa0704680:CDS | 40.0% | |
| TGTGGAAAACAACAGCTGAA+GGG | + | chr4_4:77147219-77147238 | Msa0704680:CDS | 40.0% | |
| ! | GAAGGGTTTTTCTTGTGGAT+TGG | + | chr4_4:77147236-77147255 | Msa0704680:CDS | 40.0% |
| ! | GTTACCTTTAGAAGTTCGGA+GGG | - | chr4_4:77147272-77147291 | None:intergenic | 40.0% |
| ! | TGTTACCTTTAGAAGTTCGG+AGG | - | chr4_4:77147273-77147292 | None:intergenic | 40.0% |
| ! | CTGCTGTCATATTTCTACCA+TGG | + | chr4_4:77147332-77147351 | Msa0704680:intron | 40.0% |
| AACCATTGACAGAGGAACAA+CGG | + | chr4_4:77147404-77147423 | Msa0704680:CDS | 40.0% | |
| AGGAACTTACATTCCACAGA+TGG | + | chr4_4:77147543-77147562 | Msa0704680:CDS | 40.0% | |
| GACACAACAGTTATGAGTAG+TGG | + | chr4_4:77147681-77147700 | Msa0704680:intron | 40.0% | |
| TGGAAAACAATGCTGATCCA+TGG | + | chr4_4:77147701-77147720 | Msa0704680:intron | 40.0% | |
| GTGAATACTTTCAACGCCTA+AGG | + | chr4_4:77147939-77147958 | Msa0704680:CDS | 40.0% | |
| ACGTTCAAAAAACCATGTCC+AGG | + | chr4_4:77148086-77148105 | Msa0704680:three_prime_UTR | 40.0% | |
| CGTTCAAAAAACCATGTCCA+GGG | + | chr4_4:77148087-77148106 | Msa0704680:three_prime_UTR | 40.0% | |
| CTGAAAAAGACATGCCACCT+TGG | - | chr4_4:77144469-77144488 | None:intergenic | 45.0% | |
| CTCACTTTGCACTGCAGATT+AGG | + | chr4_4:77145686-77145705 | Msa0704680:intron | 45.0% | |
| ACTTTGCACTGCAGATTAGG+AGG | + | chr4_4:77145689-77145708 | Msa0704680:intron | 45.0% | |
| CTTTGCACTGCAGATTAGGA+GGG | + | chr4_4:77145690-77145709 | Msa0704680:intron | 45.0% | |
| TGAGCCTGTTATGAAACGTC+AGG | - | chr4_4:77145903-77145922 | None:intergenic | 45.0% | |
| CAGGGATTGTATATTGGTGG+TGG | + | chr4_4:77146094-77146113 | Msa0704680:intron | 45.0% | |
| !! | CTGGCTCTGTAAATTCAGGT+TGG | + | chr4_4:77146143-77146162 | Msa0704680:intron | 45.0% |
| !! | TTTGGTGGTGGACCTAAACT+AGG | + | chr4_4:77146420-77146439 | Msa0704680:intron | 45.0% |
| !! | TTGGTGGTGGACCTAAACTA+GGG | + | chr4_4:77146421-77146440 | Msa0704680:intron | 45.0% |
| GGACCTAAACTAGGGCTTAT+TGG | + | chr4_4:77146429-77146448 | Msa0704680:intron | 45.0% | |
| AGGCCAATAAGCCCTAGTTT+AGG | - | chr4_4:77146435-77146454 | None:intergenic | 45.0% | |
| GCTGGCTATTATGTACCTAG+TGG | + | chr4_4:77146785-77146804 | Msa0704680:intron | 45.0% | |
| GCTATTATGTACCTAGTGGC+AGG | + | chr4_4:77146789-77146808 | Msa0704680:intron | 45.0% | |
| ! | CAGCTGAAGGGTTTTTCTTG+TGG | + | chr4_4:77147231-77147250 | Msa0704680:CDS | 45.0% |
| !!! | GGGTTTTTCTTGTGGATTGG+AGG | + | chr4_4:77147239-77147258 | Msa0704680:CDS | 45.0% |
| GTGATGAGATTTGCAGGTTC+TGG | + | chr4_4:77147369-77147388 | Msa0704680:intron | 45.0% | |
| AACCGTTGTTCCTCTGTCAA+TGG | - | chr4_4:77147409-77147428 | None:intergenic | 45.0% | |
| !! | AAAGGGCATCTTCTGCTTGT+CGG | - | chr4_4:77147459-77147478 | None:intergenic | 45.0% |
| AGATGCCCTTTCACAAGGTA+TGG | + | chr4_4:77147468-77147487 | Msa0704680:CDS | 45.0% | |
| GGATATTGCAATAGAGAGGC+TGG | + | chr4_4:77147564-77147583 | Msa0704680:CDS | 45.0% | |
| AAACAATGCTGATCCATGGC+AGG | + | chr4_4:77147705-77147724 | Msa0704680:intron | 45.0% | |
| CTCTTGCATGAAGACTATGC+AGG | - | chr4_4:77148001-77148020 | None:intergenic | 45.0% | |
| CTGGGCCATAATCATGATCA+TGG | - | chr4_4:77148052-77148071 | None:intergenic | 45.0% | |
| AAAAACCATGTCCAGGGTCT+CGG | + | chr4_4:77148093-77148112 | Msa0704680:three_prime_UTR | 45.0% | |
| !! | TTGATGGTGAGTCACCAAGG+TGG | + | chr4_4:77144452-77144471 | Msa0704680:five_prime_UTR | 50.0% |
| TCGCATCAGCCCTTTCAGAT+TGG | - | chr4_4:77145498-77145517 | None:intergenic | 50.0% | |
| ! | GGTCCCCTGCTTCCAAATTT+TGG | + | chr4_4:77145711-77145730 | Msa0704680:intron | 50.0% |
| ACGTCTCGCACAAAATCGAG+AGG | + | chr4_4:77145790-77145809 | Msa0704680:CDS | 50.0% | |
| ! | GGCTTATTGGCCTCACCATT+GGG | + | chr4_4:77146442-77146461 | Msa0704680:intron | 50.0% |
| GATTTGAGTAGCTGCTGGTC+TGG | - | chr4_4:77146468-77146487 | None:intergenic | 50.0% | |
| !! | TAGAGAGGGTACTACTCCTG+TGG | + | chr4_4:77146691-77146710 | Msa0704680:intron | 50.0% |
| TTGTACACAGTCCTGCCACT+AGG | - | chr4_4:77146803-77146822 | None:intergenic | 50.0% | |
| GATGGAGTATGAACACTGGG+TGG | + | chr4_4:77147031-77147050 | Msa0704680:CDS | 50.0% | |
| TCGACCCTCCGAACTTCTAA+AGG | + | chr4_4:77147265-77147284 | Msa0704680:CDS | 50.0% | |
| GCAGAAGATGCCCTTTCACA+AGG | + | chr4_4:77147463-77147482 | Msa0704680:CDS | 50.0% | |
| CTTGTTGACACAGTTGCAGC+AGG | + | chr4_4:77147508-77147527 | Msa0704680:CDS | 50.0% | |
| AATAGAGAGGCTGGAAGCTC+TGG | + | chr4_4:77147573-77147592 | Msa0704680:CDS | 50.0% | |
| !! | TCTGGCTAGCTTTGTGAACC+AGG | + | chr4_4:77147591-77147610 | Msa0704680:CDS | 50.0% |
| ACAGGCTGATCATCTTCGAC+AGG | + | chr4_4:77147850-77147869 | Msa0704680:intron | 50.0% | |
| CCATCGAGCAGTTTGACGTA+CGG | - | chr4_4:77147906-77147925 | None:intergenic | 50.0% | |
| GAAGACTATGCAGGTTCACG+AGG | - | chr4_4:77147992-77148011 | None:intergenic | 50.0% | |
| ! | GGGCTTATTGGCCTCACCAT+TGG | + | chr4_4:77146441-77146460 | Msa0704680:intron | 55.0% |
| GCAGCAGGACAACTCGTTGA+AGG | + | chr4_4:77147523-77147542 | Msa0704680:CDS | 55.0% | |
| CCGTACGTCAAACTGCTCGA+TGG | + | chr4_4:77147903-77147922 | Msa0704680:CDS | 55.0% | |
| TGCTCGATGGCTGCTTGCTT+TGG | + | chr4_4:77147916-77147935 | Msa0704680:CDS | 55.0% | |
| GCTCGATGGCTGCTTGCTTT+GGG | + | chr4_4:77147917-77147936 | Msa0704680:CDS | 55.0% | |
| TGCAGGTTCACGAGGACGAT+TGG | - | chr4_4:77147984-77148003 | None:intergenic | 55.0% | |
| ! | TAGCTGCTGGTCTGGCCCAA+TGG | - | chr4_4:77146460-77146479 | None:intergenic | 60.0% |
| AGCAACCGAGACCCTGGACA+TGG | - | chr4_4:77148101-77148120 | None:intergenic | 60.0% | |
| ATGTCCAGGGTCTCGGTTGC+TGG | + | chr4_4:77148100-77148119 | Msa0704680:three_prime_UTR | 60.0% | |
| TTTGCCAGCAACCGAGACCC+TGG | - | chr4_4:77148107-77148126 | None:intergenic | 60.0% | |
| ! | GCTGGTCTGGCCCAATGGTG+AGG | - | chr4_4:77146455-77146474 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77144389 | 77148282 | 77144389 | ID=Msa0704680;Name=Msa0704680 |
| chr4_4 | mRNA | 77144389 | 77148282 | 77144389 | ID=Msa0704680-mRNA-1;Parent=Msa0704680;Name=Msa0704680-mRNA-1;_AED=0.18;_eAED=0.18;_QI=306|1|1|1|0.87|0.77|9|276|358 |
| chr4_4 | exon | 77144389 | 77144670 | 77144389 | ID=Msa0704680-mRNA-1:exon:24348;Parent=Msa0704680-mRNA-1 |
| chr4_4 | exon | 77144823 | 77144993 | 77144823 | ID=Msa0704680-mRNA-1:exon:24349;Parent=Msa0704680-mRNA-1 |
| chr4_4 | exon | 77145158 | 77145235 | 77145158 | ID=Msa0704680-mRNA-1:exon:24350;Parent=Msa0704680-mRNA-1 |
| chr4_4 | exon | 77145782 | 77145841 | 77145782 | ID=Msa0704680-mRNA-1:exon:24351;Parent=Msa0704680-mRNA-1 |
| chr4_4 | exon | 77145918 | 77145992 | 77145918 | ID=Msa0704680-mRNA-1:exon:24352;Parent=Msa0704680-mRNA-1 |
| chr4_4 | exon | 77146097 | 77146160 | 77146097 | ID=Msa0704680-mRNA-1:exon:24353;Parent=Msa0704680-mRNA-1 |
| chr4_4 | exon | 77147015 | 77147286 | 77147015 | ID=Msa0704680-mRNA-1:exon:24354;Parent=Msa0704680-mRNA-1 |
| chr4_4 | exon | 77147385 | 77147612 | 77147385 | ID=Msa0704680-mRNA-1:exon:24355;Parent=Msa0704680-mRNA-1 |
| chr4_4 | exon | 77147854 | 77148282 | 77147854 | ID=Msa0704680-mRNA-1:exon:24356;Parent=Msa0704680-mRNA-1 |
| chr4_4 | five_prime_UTR | 77144389 | 77144670 | 77144389 | ID=Msa0704680-mRNA-1:five_prime_utr;Parent=Msa0704680-mRNA-1 |
| chr4_4 | five_prime_UTR | 77144823 | 77144846 | 77144823 | ID=Msa0704680-mRNA-1:five_prime_utr;Parent=Msa0704680-mRNA-1 |
| chr4_4 | CDS | 77144847 | 77144993 | 77144847 | ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1 |
| chr4_4 | CDS | 77145158 | 77145235 | 77145158 | ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1 |
| chr4_4 | CDS | 77145782 | 77145841 | 77145782 | ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1 |
| chr4_4 | CDS | 77145918 | 77145992 | 77145918 | ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1 |
| chr4_4 | CDS | 77146097 | 77146160 | 77146097 | ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1 |
| chr4_4 | CDS | 77147015 | 77147286 | 77147015 | ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1 |
| chr4_4 | CDS | 77147385 | 77147612 | 77147385 | ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1 |
| chr4_4 | CDS | 77147854 | 77148006 | 77147854 | ID=Msa0704680-mRNA-1:cds;Parent=Msa0704680-mRNA-1 |
| chr4_4 | three_prime_UTR | 77148007 | 77148282 | 77148007 | ID=Msa0704680-mRNA-1:three_prime_utr;Parent=Msa0704680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
