Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171450 | XP_013450110.1 | 97.578 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043740 | Msa1171450 | 0.810500 | 1.117399e-50 | -8.615850e-47 |
| Msa0090090 | Msa1171450 | 0.819259 | 1.275940e-52 | -8.615850e-47 |
| Msa0608980 | Msa1171450 | 0.809447 | 1.883674e-50 | -8.615850e-47 |
| Msa0650560 | Msa1171450 | 0.809225 | 2.101749e-50 | -8.615850e-47 |
| Msa0704560 | Msa1171450 | 0.814912 | 1.210104e-51 | -8.615850e-47 |
| Msa0740630 | Msa1171450 | 0.814315 | 1.640024e-51 | -8.615850e-47 |
| Msa0790920 | Msa1171450 | 0.985366 | 2.409306e-163 | -8.615850e-47 |
| Msa0820880 | Msa1171450 | 0.815614 | 8.447052e-52 | -8.615850e-47 |
| Msa0137560 | Msa1171450 | 0.822805 | 1.946396e-53 | -8.615850e-47 |
| Msa0162680 | Msa1171450 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa0185100 | Msa1171450 | 0.800100 | 1.688354e-48 | -8.615850e-47 |
| Msa0193190 | Msa1171450 | 0.811084 | 8.354823e-51 | -8.615850e-47 |
| Msa0367860 | Msa1171450 | 0.804460 | 2.136966e-49 | -8.615850e-47 |
| Msa0460600 | Msa1171450 | 0.804299 | 2.308814e-49 | -8.615850e-47 |
| Msa1025750 | Msa1171450 | 0.801983 | 6.960653e-49 | -8.615850e-47 |
| Msa0273070 | Msa1171450 | 0.812590 | 3.928248e-51 | -8.615850e-47 |
| Msa0296910 | Msa1171450 | 0.809312 | 2.013985e-50 | -8.615850e-47 |
| Msa0335070 | Msa1171450 | 0.802374 | 5.783184e-49 | -8.615850e-47 |
| Msa1136760 | Msa1171450 | 0.826720 | 2.323220e-54 | -8.615850e-47 |
| Msa1171450 | Msa1203810 | 0.806817 | 6.843410e-50 | -8.615850e-47 |
| Msa1171450 | Msa1296240 | 0.820899 | 5.374161e-53 | -8.615850e-47 |
| Msa1171450 | Msa1361710 | 0.834883 | 2.316867e-56 | -8.615850e-47 |
| Msa1171450 | Msa1369320 | 0.828539 | 8.500143e-55 | -8.615850e-47 |
| Msa1171450 | Msa1398140 | 0.816453 | 5.487227e-52 | -8.615850e-47 |
| Msa1171450 | Msa1420940 | 0.817273 | 3.592110e-52 | -8.615850e-47 |
| Msa1171450 | Msa1427000 | 0.809244 | 2.082779e-50 | -8.615850e-47 |
| Msa1171450 | Msa1439780 | 0.815606 | 8.483891e-52 | -8.615850e-47 |
| Msa1171450 | Msa1447880 | 0.803491 | 3.398988e-49 | -8.615850e-47 |
| Msa1171450 | Msa1451990 | 0.989473 | 2.833798e-178 | -8.615850e-47 |
| Msa1171450 | Msa1455200 | 0.800533 | 1.378356e-48 | -8.615850e-47 |
| Msa0534270 | Msa1171450 | 0.803772 | 2.972536e-49 | -8.615850e-47 |
| Msa0848440 | Msa1171450 | 0.801041 | 1.085583e-48 | -8.615850e-47 |
| Msa0859040 | Msa1171450 | 0.805404 | 1.356916e-49 | -8.615850e-47 |
| Msa0895620 | Msa1171450 | 0.816742 | 4.727993e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171450 | MtrunA17_Chr7g0266411 | 97.578 | 289 | 7 | 0 | 1 | 289 | 1 | 289 | 0.0 | 570 |
| Msa1171450 | MtrunA17_Chr1g0178531 | 43.871 | 310 | 119 | 14 | 1 | 287 | 3 | 280 | 5.27e-60 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171450 | AT3G52710.1 | 41.447 | 304 | 133 | 12 | 5 | 281 | 3 | 288 | 6.41e-49 | 164 |
| Msa1171450 | AT2G36220.1 | 40.702 | 285 | 128 | 12 | 2 | 277 | 4 | 256 | 6.28e-40 | 140 |
Find 75 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGAATTGGAATTGGAATT+AGG | 0.193499 | 8_1:-1055888 | None:intergenic |
| ATTCTCCGCCGGAATCATTC+TGG | 0.318910 | 8_1:+1055769 | Msa1171450:CDS |
| TCGAATTGGAATTGGAATTA+GGG | 0.319492 | 8_1:-1055887 | None:intergenic |
| AAGGAAGGTTTCTGAGGTTT+AGG | 0.324775 | 8_1:-1055972 | None:intergenic |
| GAGGGTGAACCGCCTGGTTT+GGG | 0.327472 | 8_1:+1056413 | Msa1171450:CDS |
| GGAGGGTGAACCGCCTGGTT+TGG | 0.332813 | 8_1:+1056412 | Msa1171450:CDS |
| CGACGTGTCGTTTGTGGAAT+CGG | 0.337131 | 8_1:+1056370 | Msa1171450:CDS |
| CTTAAACGACGTGTCGTTTG+TGG | 0.368356 | 8_1:+1056364 | Msa1171450:CDS |
| GGCTTTGGCTGCGGCGGTGA+CGG | 0.374114 | 8_1:-1056144 | None:intergenic |
| AATGATTCCGGCGGAGAATC+GGG | 0.385576 | 8_1:-1055765 | None:intergenic |
| AAATCGAAGACGTCGATGAT+TGG | 0.397400 | 8_1:+1055945 | Msa1171450:CDS |
| CTGGAGAGCCAGAATGATTC+CGG | 0.399676 | 8_1:-1055777 | None:intergenic |
| CCAACGGAGGCGCTTCGCTT+TGG | 0.403150 | 8_1:-1056044 | None:intergenic |
| TGTTGAACTTGAATTTCCTT+TGG | 0.404679 | 8_1:-1055856 | None:intergenic |
| GGGATGATGCGGTTCACGTC+TGG | 0.406943 | 8_1:+1056437 | Msa1171450:CDS |
| AGTCGAAGTCGAATTGGAAT+TGG | 0.409214 | 8_1:-1055895 | None:intergenic |
| TTTCCCATGCAAGACACTTT+CGG | 0.424095 | 8_1:-1056092 | None:intergenic |
| GAATGATTCCGGCGGAGAAT+CGG | 0.431837 | 8_1:-1055766 | None:intergenic |
| GTTGGAAGTCGAAGTCGAAT+TGG | 0.435363 | 8_1:-1055901 | None:intergenic |
| GGATGATGATGAGAGGATTC+CGG | 0.444774 | 8_1:-1055744 | None:intergenic |
| GGCTGCGGCGGTGACGGAGG+AGG | 0.447604 | 8_1:-1056138 | None:intergenic |
| CAAGACACTTTCGGTGATGA+AGG | 0.466166 | 8_1:-1056083 | None:intergenic |
| ATCAGTTGAACCGCCGGCAC+AGG | 0.471514 | 8_1:-1055670 | None:intergenic |
| GAGAAACGATTCTTCGGCGT+TGG | 0.475237 | 8_1:+1056274 | Msa1171450:CDS |
| CACGGCGGCTTTGGCTGCGG+CGG | 0.478127 | 8_1:-1056150 | None:intergenic |
| ATCATGTTTATTCCTTCCAC+CGG | 0.487247 | 8_1:-1056249 | None:intergenic |
| GGTGAACCGCCTGGTTTGGG+TGG | 0.490276 | 8_1:+1056416 | Msa1171450:CDS |
| TTTCACGGCGGCTTTGGCTG+CGG | 0.490475 | 8_1:-1056153 | None:intergenic |
| CGCATCATCCCACCCAAACC+AGG | 0.492634 | 8_1:-1056425 | None:intergenic |
| GGAAACAACTTAATGTTACT+CGG | 0.496570 | 8_1:-1056023 | None:intergenic |
| CAAAGCGAAGCGCCTCCGTT+GGG | 0.503793 | 8_1:+1056045 | Msa1171450:CDS |
| CTGGAAGACGGTCTGAGTCG+TGG | 0.507701 | 8_1:+1056456 | Msa1171450:CDS |
| CCAAAGCGAAGCGCCTCCGT+TGG | 0.522856 | 8_1:+1056044 | Msa1171450:CDS |
| GTATCGGAGGGTGAACCGCC+TGG | 0.524644 | 8_1:+1056407 | Msa1171450:CDS |
| GTGAACCGCCTGGTTTGGGT+GGG | 0.526851 | 8_1:+1056417 | Msa1171450:CDS |
| ATTTGCGAATCGCTGAGAGT+TGG | 0.530028 | 8_1:-1055919 | None:intergenic |
| TGATCGGAGAAACGATTCTT+CGG | 0.530088 | 8_1:+1056268 | Msa1171450:CDS |
| TGGAAGACGGTCTGAGTCGT+GGG | 0.533984 | 8_1:+1056457 | Msa1171450:CDS |
| AGATGAAGAAAACGAGTGGT+TGG | 0.534269 | 8_1:+1055800 | Msa1171450:CDS |
| ACACTGGTTTCAGCCTGTGC+CGG | 0.536079 | 8_1:+1055657 | Msa1171450:CDS |
| TGATGAGAGGATTCCGGTGG+AGG | 0.536818 | 8_1:-1055738 | None:intergenic |
| TTTGGCTGCGGCGGTGACGG+AGG | 0.537701 | 8_1:-1056141 | None:intergenic |
| AGATTCTTAGCGTCGAAGGA+AGG | 0.541094 | 8_1:-1055987 | None:intergenic |
| TCTCAAAACGGATCCTCCAC+CGG | 0.544913 | 8_1:+1055725 | Msa1171450:CDS |
| ATCGTCGGCTTGTGTCTCGC+AGG | 0.552782 | 8_1:-1055703 | None:intergenic |
| GTGCCGGCGGTTCAACTGAT+CGG | 0.557681 | 8_1:+1055673 | Msa1171450:CDS |
| CTGGTTTGGGTGGGATGATG+CGG | 0.557941 | 8_1:+1056426 | Msa1171450:CDS |
| CTGGTTTCAGCCTGTGCCGG+CGG | 0.561067 | 8_1:+1055660 | Msa1171450:CDS |
| TTCAAAAGCGCGTGATAGCA+CGG | 0.567098 | 8_1:+1056337 | Msa1171450:CDS |
| TCATCATCCCGATTCTCCGC+CGG | 0.570450 | 8_1:+1055758 | Msa1171450:CDS |
| TTTCCGATCAGTTGAACCGC+CGG | 0.577458 | 8_1:-1055676 | None:intergenic |
| TCTCAAGGATATGCTACAAG+TGG | 0.579670 | 8_1:+1055632 | None:intergenic |
| ATCACCGAAAGTGTCTTGCA+TGG | 0.582694 | 8_1:+1056088 | Msa1171450:CDS |
| ACAAGCCGACGATCTCAAAA+CGG | 0.592406 | 8_1:+1055713 | Msa1171450:CDS |
| TCACCGAAAGTGTCTTGCAT+GGG | 0.596284 | 8_1:+1056089 | Msa1171450:CDS |
| ACGAAGATTCTTAGCGTCGA+AGG | 0.596920 | 8_1:-1055991 | None:intergenic |
| GACGAGAAACAGCGTATCGG+AGG | 0.603677 | 8_1:+1056394 | Msa1171450:CDS |
| GCGTCGAAGGAAGGTTTCTG+AGG | 0.608308 | 8_1:-1055978 | None:intergenic |
| GTGGAAGGAATAAACATGAT+CGG | 0.609068 | 8_1:+1056252 | Msa1171450:CDS |
| TGCGGTTCACGTCTGGAAGA+CGG | 0.620278 | 8_1:+1056444 | Msa1171450:CDS |
| GAACGCAAAGTATCAACCAA+AGG | 0.624704 | 8_1:+1055840 | Msa1171450:CDS |
| GTTTATTCCTTCCACCGGAG+CGG | 0.629764 | 8_1:-1056244 | None:intergenic |
| TATGCTACAAGTGGAAACAC+TGG | 0.636979 | 8_1:+1055641 | None:intergenic |
| ACGAATACTATCTTGACACG+TGG | 0.641215 | 8_1:-1056496 | None:intergenic |
| AACAAACGATTTCCCAACGG+AGG | 0.643622 | 8_1:-1056057 | None:intergenic |
| AAGACGGTCTGAGTCGTGGG+TGG | 0.657734 | 8_1:+1056460 | Msa1171450:CDS |
| TGATGATGAGAGGATTCCGG+TGG | 0.659739 | 8_1:-1055741 | None:intergenic |
| GGTGACGAGAAACAGCGTAT+CGG | 0.661202 | 8_1:+1056391 | Msa1171450:CDS |
| AGAATCGGGATGATGATGAG+AGG | 0.662087 | 8_1:-1055751 | None:intergenic |
| TTCAACAAACGATTTCCCAA+CGG | 0.663139 | 8_1:-1056060 | None:intergenic |
| ACGAGAAACAGCGTATCGGA+GGG | 0.675020 | 8_1:+1056395 | Msa1171450:CDS |
| CCAGAGATGAAGAAAACGAG+TGG | 0.676074 | 8_1:+1055796 | Msa1171450:CDS |
| GAGAGCCAGAATGATTCCGG+CGG | 0.678279 | 8_1:-1055774 | None:intergenic |
| ATCATCCCACCCAAACCAGG+CGG | 0.701016 | 8_1:-1056422 | None:intergenic |
| GGAAAAGTCAGATCTAAACG+CGG | 0.786700 | 8_1:+1056110 | Msa1171450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TGTTGAACTTGAATTTCCTT+TGG | - | chr8_1:1055859-1055878 | None:intergenic | 30.0% | |
| TCGAATTGGAATTGGAATTA+GGG | - | chr8_1:1055890-1055909 | None:intergenic | 30.0% | |
| GGAAACAACTTAATGTTACT+CGG | - | chr8_1:1056026-1056045 | None:intergenic | 30.0% | |
| !!! | GTGTTTTGATTGTTTTCTCT+CGG | - | chr8_1:1056195-1056214 | None:intergenic | 30.0% |
| TGTTGAACTTGAATTTCCTT+TGG | - | chr8_1:1055859-1055878 | None:intergenic | 30.0% | |
| TCGAATTGGAATTGGAATTA+GGG | - | chr8_1:1055890-1055909 | None:intergenic | 30.0% | |
| GGAAACAACTTAATGTTACT+CGG | - | chr8_1:1056026-1056045 | None:intergenic | 30.0% | |
| !!! | GTGTTTTGATTGTTTTCTCT+CGG | - | chr8_1:1056195-1056214 | None:intergenic | 30.0% |
| GTCGAATTGGAATTGGAATT+AGG | - | chr8_1:1055891-1055910 | None:intergenic | 35.0% | |
| TTCAACAAACGATTTCCCAA+CGG | - | chr8_1:1056063-1056082 | None:intergenic | 35.0% | |
| ATCATGTTTATTCCTTCCAC+CGG | - | chr8_1:1056252-1056271 | None:intergenic | 35.0% | |
| GTGGAAGGAATAAACATGAT+CGG | + | chr8_1:1056252-1056271 | Msa1171450:CDS | 35.0% | |
| GTCGAATTGGAATTGGAATT+AGG | - | chr8_1:1055891-1055910 | None:intergenic | 35.0% | |
| TTCAACAAACGATTTCCCAA+CGG | - | chr8_1:1056063-1056082 | None:intergenic | 35.0% | |
| ATCATGTTTATTCCTTCCAC+CGG | - | chr8_1:1056252-1056271 | None:intergenic | 35.0% | |
| GTGGAAGGAATAAACATGAT+CGG | + | chr8_1:1056252-1056271 | Msa1171450:CDS | 35.0% | |
| AGATGAAGAAAACGAGTGGT+TGG | + | chr8_1:1055800-1055819 | Msa1171450:CDS | 40.0% | |
| ! | GAACGCAAAGTATCAACCAA+AGG | + | chr8_1:1055840-1055859 | Msa1171450:CDS | 40.0% |
| AGTCGAAGTCGAATTGGAAT+TGG | - | chr8_1:1055898-1055917 | None:intergenic | 40.0% | |
| AAATCGAAGACGTCGATGAT+TGG | + | chr8_1:1055945-1055964 | Msa1171450:CDS | 40.0% | |
| !! | AAGGAAGGTTTCTGAGGTTT+AGG | - | chr8_1:1055975-1055994 | None:intergenic | 40.0% |
| TTTCCCATGCAAGACACTTT+CGG | - | chr8_1:1056095-1056114 | None:intergenic | 40.0% | |
| GGAAAAGTCAGATCTAAACG+CGG | + | chr8_1:1056110-1056129 | Msa1171450:CDS | 40.0% | |
| !!! | TCTCGCCGTTTTTTCTTTCA+CGG | - | chr8_1:1056171-1056190 | None:intergenic | 40.0% |
| TGATCGGAGAAACGATTCTT+CGG | + | chr8_1:1056268-1056287 | Msa1171450:CDS | 40.0% | |
| AGATGAAGAAAACGAGTGGT+TGG | + | chr8_1:1055800-1055819 | Msa1171450:CDS | 40.0% | |
| ! | GAACGCAAAGTATCAACCAA+AGG | + | chr8_1:1055840-1055859 | Msa1171450:CDS | 40.0% |
| AGTCGAAGTCGAATTGGAAT+TGG | - | chr8_1:1055898-1055917 | None:intergenic | 40.0% | |
| AAATCGAAGACGTCGATGAT+TGG | + | chr8_1:1055945-1055964 | Msa1171450:CDS | 40.0% | |
| !! | AAGGAAGGTTTCTGAGGTTT+AGG | - | chr8_1:1055975-1055994 | None:intergenic | 40.0% |
| TTTCCCATGCAAGACACTTT+CGG | - | chr8_1:1056095-1056114 | None:intergenic | 40.0% | |
| GGAAAAGTCAGATCTAAACG+CGG | + | chr8_1:1056110-1056129 | Msa1171450:CDS | 40.0% | |
| !!! | TCTCGCCGTTTTTTCTTTCA+CGG | - | chr8_1:1056171-1056190 | None:intergenic | 40.0% |
| TGATCGGAGAAACGATTCTT+CGG | + | chr8_1:1056268-1056287 | Msa1171450:CDS | 40.0% | |
| ACAAGCCGACGATCTCAAAA+CGG | + | chr8_1:1055713-1055732 | Msa1171450:CDS | 45.0% | |
| !!! | AGGATCCGTTTTGAGATCGT+CGG | - | chr8_1:1055721-1055740 | None:intergenic | 45.0% |
| ! | GGATGATGATGAGAGGATTC+CGG | - | chr8_1:1055747-1055766 | None:intergenic | 45.0% |
| ! | AGAATCGGGATGATGATGAG+AGG | - | chr8_1:1055754-1055773 | None:intergenic | 45.0% |
| ! | CCACTCGTTTTCTTCATCTC+TGG | - | chr8_1:1055799-1055818 | None:intergenic | 45.0% |
| CCAGAGATGAAGAAAACGAG+TGG | + | chr8_1:1055796-1055815 | Msa1171450:CDS | 45.0% | |
| GTTGGAAGTCGAAGTCGAAT+TGG | - | chr8_1:1055904-1055923 | None:intergenic | 45.0% | |
| ATTTGCGAATCGCTGAGAGT+TGG | - | chr8_1:1055922-1055941 | None:intergenic | 45.0% | |
| ! | AGATTCTTAGCGTCGAAGGA+AGG | - | chr8_1:1055990-1056009 | None:intergenic | 45.0% |
| ! | ACGAAGATTCTTAGCGTCGA+AGG | - | chr8_1:1055994-1056013 | None:intergenic | 45.0% |
| AACAAACGATTTCCCAACGG+AGG | - | chr8_1:1056060-1056079 | None:intergenic | 45.0% | |
| CAAGACACTTTCGGTGATGA+AGG | - | chr8_1:1056086-1056105 | None:intergenic | 45.0% | |
| !! | ATCACCGAAAGTGTCTTGCA+TGG | + | chr8_1:1056088-1056107 | Msa1171450:CDS | 45.0% |
| !! | TCACCGAAAGTGTCTTGCAT+GGG | + | chr8_1:1056089-1056108 | Msa1171450:CDS | 45.0% |
| ! | TTTTTCTTTCACGGCGGCTT+TGG | - | chr8_1:1056162-1056181 | None:intergenic | 45.0% |
| AGCCGCCGTGAAAGAAAAAA+CGG | + | chr8_1:1056163-1056182 | Msa1171450:CDS | 45.0% | |
| !!! | TTTCGTGCTATTTTCCGCTC+CGG | + | chr8_1:1056230-1056249 | Msa1171450:CDS | 45.0% |
| ! | TTCAAAAGCGCGTGATAGCA+CGG | + | chr8_1:1056337-1056356 | Msa1171450:CDS | 45.0% |
| !! | CTTAAACGACGTGTCGTTTG+TGG | + | chr8_1:1056364-1056383 | Msa1171450:CDS | 45.0% |
| ACAAGCCGACGATCTCAAAA+CGG | + | chr8_1:1055713-1055732 | Msa1171450:CDS | 45.0% | |
| !!! | AGGATCCGTTTTGAGATCGT+CGG | - | chr8_1:1055721-1055740 | None:intergenic | 45.0% |
| ! | GGATGATGATGAGAGGATTC+CGG | - | chr8_1:1055747-1055766 | None:intergenic | 45.0% |
| ! | AGAATCGGGATGATGATGAG+AGG | - | chr8_1:1055754-1055773 | None:intergenic | 45.0% |
| ! | CCACTCGTTTTCTTCATCTC+TGG | - | chr8_1:1055799-1055818 | None:intergenic | 45.0% |
| CCAGAGATGAAGAAAACGAG+TGG | + | chr8_1:1055796-1055815 | Msa1171450:CDS | 45.0% | |
| GTTGGAAGTCGAAGTCGAAT+TGG | - | chr8_1:1055904-1055923 | None:intergenic | 45.0% | |
| ATTTGCGAATCGCTGAGAGT+TGG | - | chr8_1:1055922-1055941 | None:intergenic | 45.0% | |
| ! | AGATTCTTAGCGTCGAAGGA+AGG | - | chr8_1:1055990-1056009 | None:intergenic | 45.0% |
| ! | ACGAAGATTCTTAGCGTCGA+AGG | - | chr8_1:1055994-1056013 | None:intergenic | 45.0% |
| AACAAACGATTTCCCAACGG+AGG | - | chr8_1:1056060-1056079 | None:intergenic | 45.0% | |
| CAAGACACTTTCGGTGATGA+AGG | - | chr8_1:1056086-1056105 | None:intergenic | 45.0% | |
| !! | ATCACCGAAAGTGTCTTGCA+TGG | + | chr8_1:1056088-1056107 | Msa1171450:CDS | 45.0% |
| !! | TCACCGAAAGTGTCTTGCAT+GGG | + | chr8_1:1056089-1056108 | Msa1171450:CDS | 45.0% |
| ! | TTTTTCTTTCACGGCGGCTT+TGG | - | chr8_1:1056162-1056181 | None:intergenic | 45.0% |
| AGCCGCCGTGAAAGAAAAAA+CGG | + | chr8_1:1056163-1056182 | Msa1171450:CDS | 45.0% | |
| !!! | TTTCGTGCTATTTTCCGCTC+CGG | + | chr8_1:1056230-1056249 | Msa1171450:CDS | 45.0% |
| ! | TTCAAAAGCGCGTGATAGCA+CGG | + | chr8_1:1056337-1056356 | Msa1171450:CDS | 45.0% |
| !! | CTTAAACGACGTGTCGTTTG+TGG | + | chr8_1:1056364-1056383 | Msa1171450:CDS | 45.0% |
| TTTCCGATCAGTTGAACCGC+CGG | - | chr8_1:1055679-1055698 | None:intergenic | 50.0% | |
| TCTCAAAACGGATCCTCCAC+CGG | + | chr8_1:1055725-1055744 | Msa1171450:CDS | 50.0% | |
| ! | TGATGATGAGAGGATTCCGG+TGG | - | chr8_1:1055744-1055763 | None:intergenic | 50.0% |
| AATGATTCCGGCGGAGAATC+GGG | - | chr8_1:1055768-1055787 | None:intergenic | 50.0% | |
| GAATGATTCCGGCGGAGAAT+CGG | - | chr8_1:1055769-1055788 | None:intergenic | 50.0% | |
| ATTCTCCGCCGGAATCATTC+TGG | + | chr8_1:1055769-1055788 | Msa1171450:CDS | 50.0% | |
| CTGGAGAGCCAGAATGATTC+CGG | - | chr8_1:1055780-1055799 | None:intergenic | 50.0% | |
| !!! | CGCCGTTTTTTCTTTCACGG+CGG | - | chr8_1:1056168-1056187 | None:intergenic | 50.0% |
| GTTTATTCCTTCCACCGGAG+CGG | - | chr8_1:1056247-1056266 | None:intergenic | 50.0% | |
| GAGAAACGATTCTTCGGCGT+TGG | + | chr8_1:1056274-1056293 | Msa1171450:CDS | 50.0% | |
| !! | CGACGTGTCGTTTGTGGAAT+CGG | + | chr8_1:1056370-1056389 | Msa1171450:CDS | 50.0% |
| GGTGACGAGAAACAGCGTAT+CGG | + | chr8_1:1056391-1056410 | Msa1171450:CDS | 50.0% | |
| ACGAGAAACAGCGTATCGGA+GGG | + | chr8_1:1056395-1056414 | Msa1171450:CDS | 50.0% | |
| TTTCCGATCAGTTGAACCGC+CGG | - | chr8_1:1055679-1055698 | None:intergenic | 50.0% | |
| TCTCAAAACGGATCCTCCAC+CGG | + | chr8_1:1055725-1055744 | Msa1171450:CDS | 50.0% | |
| ! | TGATGATGAGAGGATTCCGG+TGG | - | chr8_1:1055744-1055763 | None:intergenic | 50.0% |
| AATGATTCCGGCGGAGAATC+GGG | - | chr8_1:1055768-1055787 | None:intergenic | 50.0% | |
| GAATGATTCCGGCGGAGAAT+CGG | - | chr8_1:1055769-1055788 | None:intergenic | 50.0% | |
| ATTCTCCGCCGGAATCATTC+TGG | + | chr8_1:1055769-1055788 | Msa1171450:CDS | 50.0% | |
| CTGGAGAGCCAGAATGATTC+CGG | - | chr8_1:1055780-1055799 | None:intergenic | 50.0% | |
| !!! | CGCCGTTTTTTCTTTCACGG+CGG | - | chr8_1:1056168-1056187 | None:intergenic | 50.0% |
| GTTTATTCCTTCCACCGGAG+CGG | - | chr8_1:1056247-1056266 | None:intergenic | 50.0% | |
| GAGAAACGATTCTTCGGCGT+TGG | + | chr8_1:1056274-1056293 | Msa1171450:CDS | 50.0% | |
| !! | CGACGTGTCGTTTGTGGAAT+CGG | + | chr8_1:1056370-1056389 | Msa1171450:CDS | 50.0% |
| GGTGACGAGAAACAGCGTAT+CGG | + | chr8_1:1056391-1056410 | Msa1171450:CDS | 50.0% | |
| ACGAGAAACAGCGTATCGGA+GGG | + | chr8_1:1056395-1056414 | Msa1171450:CDS | 50.0% | |
| !! | ACACTGGTTTCAGCCTGTGC+CGG | + | chr8_1:1055657-1055676 | Msa1171450:CDS | 55.0% |
| TGATGAGAGGATTCCGGTGG+AGG | - | chr8_1:1055741-1055760 | None:intergenic | 55.0% | |
| TCATCATCCCGATTCTCCGC+CGG | + | chr8_1:1055758-1055777 | Msa1171450:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+CGG | - | chr8_1:1055777-1055796 | None:intergenic | 55.0% | |
| GCGTCGAAGGAAGGTTTCTG+AGG | - | chr8_1:1055981-1056000 | None:intergenic | 55.0% | |
| ! | CTATTTTCCGCTCCGGTGGA+AGG | + | chr8_1:1056237-1056256 | Msa1171450:CDS | 55.0% |
| GACGAGAAACAGCGTATCGG+AGG | + | chr8_1:1056394-1056413 | Msa1171450:CDS | 55.0% | |
| ATCATCCCACCCAAACCAGG+CGG | - | chr8_1:1056425-1056444 | None:intergenic | 55.0% | |
| !! | CTGGTTTGGGTGGGATGATG+CGG | + | chr8_1:1056426-1056445 | Msa1171450:CDS | 55.0% |
| TGCGGTTCACGTCTGGAAGA+CGG | + | chr8_1:1056444-1056463 | Msa1171450:CDS | 55.0% | |
| TGGAAGACGGTCTGAGTCGT+GGG | + | chr8_1:1056457-1056476 | Msa1171450:CDS | 55.0% | |
| !! | ACACTGGTTTCAGCCTGTGC+CGG | + | chr8_1:1055657-1055676 | Msa1171450:CDS | 55.0% |
| TGATGAGAGGATTCCGGTGG+AGG | - | chr8_1:1055741-1055760 | None:intergenic | 55.0% | |
| TCATCATCCCGATTCTCCGC+CGG | + | chr8_1:1055758-1055777 | Msa1171450:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+CGG | - | chr8_1:1055777-1055796 | None:intergenic | 55.0% | |
| GCGTCGAAGGAAGGTTTCTG+AGG | - | chr8_1:1055981-1056000 | None:intergenic | 55.0% | |
| ! | CTATTTTCCGCTCCGGTGGA+AGG | + | chr8_1:1056237-1056256 | Msa1171450:CDS | 55.0% |
| GACGAGAAACAGCGTATCGG+AGG | + | chr8_1:1056394-1056413 | Msa1171450:CDS | 55.0% | |
| ATCATCCCACCCAAACCAGG+CGG | - | chr8_1:1056425-1056444 | None:intergenic | 55.0% | |
| !! | CTGGTTTGGGTGGGATGATG+CGG | + | chr8_1:1056426-1056445 | Msa1171450:CDS | 55.0% |
| TGCGGTTCACGTCTGGAAGA+CGG | + | chr8_1:1056444-1056463 | Msa1171450:CDS | 55.0% | |
| TGGAAGACGGTCTGAGTCGT+GGG | + | chr8_1:1056457-1056476 | Msa1171450:CDS | 55.0% | |
| ATCAGTTGAACCGCCGGCAC+AGG | - | chr8_1:1055673-1055692 | None:intergenic | 60.0% | |
| ! | GTGCCGGCGGTTCAACTGAT+CGG | + | chr8_1:1055673-1055692 | Msa1171450:CDS | 60.0% |
| !! | ATCGTCGGCTTGTGTCTCGC+AGG | - | chr8_1:1055706-1055725 | None:intergenic | 60.0% |
| ! | CAAAGCGAAGCGCCTCCGTT+GGG | + | chr8_1:1056045-1056064 | Msa1171450:CDS | 60.0% |
| ! | TTTCACGGCGGCTTTGGCTG+CGG | - | chr8_1:1056156-1056175 | None:intergenic | 60.0% |
| !!! | CGTGCTATTTTCCGCTCCGG+TGG | + | chr8_1:1056233-1056252 | Msa1171450:CDS | 60.0% |
| GAGGGTGAACCGCCTGGTTT+GGG | + | chr8_1:1056413-1056432 | Msa1171450:CDS | 60.0% | |
| !! | GTGAACCGCCTGGTTTGGGT+GGG | + | chr8_1:1056417-1056436 | Msa1171450:CDS | 60.0% |
| CGCATCATCCCACCCAAACC+AGG | - | chr8_1:1056428-1056447 | None:intergenic | 60.0% | |
| GGGATGATGCGGTTCACGTC+TGG | + | chr8_1:1056437-1056456 | Msa1171450:CDS | 60.0% | |
| CTGGAAGACGGTCTGAGTCG+TGG | + | chr8_1:1056456-1056475 | Msa1171450:CDS | 60.0% | |
| AAGACGGTCTGAGTCGTGGG+TGG | + | chr8_1:1056460-1056479 | Msa1171450:CDS | 60.0% | |
| ATCAGTTGAACCGCCGGCAC+AGG | - | chr8_1:1055673-1055692 | None:intergenic | 60.0% | |
| ! | GTGCCGGCGGTTCAACTGAT+CGG | + | chr8_1:1055673-1055692 | Msa1171450:CDS | 60.0% |
| !! | ATCGTCGGCTTGTGTCTCGC+AGG | - | chr8_1:1055706-1055725 | None:intergenic | 60.0% |
| ! | CAAAGCGAAGCGCCTCCGTT+GGG | + | chr8_1:1056045-1056064 | Msa1171450:CDS | 60.0% |
| ! | TTTCACGGCGGCTTTGGCTG+CGG | - | chr8_1:1056156-1056175 | None:intergenic | 60.0% |
| !!! | CGTGCTATTTTCCGCTCCGG+TGG | + | chr8_1:1056233-1056252 | Msa1171450:CDS | 60.0% |
| GAGGGTGAACCGCCTGGTTT+GGG | + | chr8_1:1056413-1056432 | Msa1171450:CDS | 60.0% | |
| !! | GTGAACCGCCTGGTTTGGGT+GGG | + | chr8_1:1056417-1056436 | Msa1171450:CDS | 60.0% |
| CGCATCATCCCACCCAAACC+AGG | - | chr8_1:1056428-1056447 | None:intergenic | 60.0% | |
| GGGATGATGCGGTTCACGTC+TGG | + | chr8_1:1056437-1056456 | Msa1171450:CDS | 60.0% | |
| CTGGAAGACGGTCTGAGTCG+TGG | + | chr8_1:1056456-1056475 | Msa1171450:CDS | 60.0% | |
| AAGACGGTCTGAGTCGTGGG+TGG | + | chr8_1:1056460-1056479 | Msa1171450:CDS | 60.0% | |
| CTGGTTTCAGCCTGTGCCGG+CGG | + | chr8_1:1055660-1055679 | Msa1171450:CDS | 65.0% | |
| !! | CCAACGGAGGCGCTTCGCTT+TGG | - | chr8_1:1056047-1056066 | None:intergenic | 65.0% |
| ! | CCAAAGCGAAGCGCCTCCGT+TGG | + | chr8_1:1056044-1056063 | Msa1171450:CDS | 65.0% |
| GTATCGGAGGGTGAACCGCC+TGG | + | chr8_1:1056407-1056426 | Msa1171450:CDS | 65.0% | |
| GGAGGGTGAACCGCCTGGTT+TGG | + | chr8_1:1056412-1056431 | Msa1171450:CDS | 65.0% | |
| !! | GGTGAACCGCCTGGTTTGGG+TGG | + | chr8_1:1056416-1056435 | Msa1171450:CDS | 65.0% |
| CTGGTTTCAGCCTGTGCCGG+CGG | + | chr8_1:1055660-1055679 | Msa1171450:CDS | 65.0% | |
| !! | CCAACGGAGGCGCTTCGCTT+TGG | - | chr8_1:1056047-1056066 | None:intergenic | 65.0% |
| ! | CCAAAGCGAAGCGCCTCCGT+TGG | + | chr8_1:1056044-1056063 | Msa1171450:CDS | 65.0% |
| GTATCGGAGGGTGAACCGCC+TGG | + | chr8_1:1056407-1056426 | Msa1171450:CDS | 65.0% | |
| GGAGGGTGAACCGCCTGGTT+TGG | + | chr8_1:1056412-1056431 | Msa1171450:CDS | 65.0% | |
| !! | GGTGAACCGCCTGGTTTGGG+TGG | + | chr8_1:1056416-1056435 | Msa1171450:CDS | 65.0% |
| ! | TTTGGCTGCGGCGGTGACGG+AGG | - | chr8_1:1056144-1056163 | None:intergenic | 70.0% |
| ! | GGCTTTGGCTGCGGCGGTGA+CGG | - | chr8_1:1056147-1056166 | None:intergenic | 70.0% |
| ! | TTTGGCTGCGGCGGTGACGG+AGG | - | chr8_1:1056144-1056163 | None:intergenic | 70.0% |
| ! | GGCTTTGGCTGCGGCGGTGA+CGG | - | chr8_1:1056147-1056166 | None:intergenic | 70.0% |
| ! | CACGGCGGCTTTGGCTGCGG+CGG | - | chr8_1:1056153-1056172 | None:intergenic | 75.0% |
| ! | CACGGCGGCTTTGGCTGCGG+CGG | - | chr8_1:1056153-1056172 | None:intergenic | 75.0% |
| !!! | GGCTGCGGCGGTGACGGAGG+AGG | - | chr8_1:1056141-1056160 | None:intergenic | 80.0% |
| !!! | GGCTGCGGCGGTGACGGAGG+AGG | - | chr8_1:1056141-1056160 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 1055642 | 1056511 | 1055642 | ID=Msa1171450;Name=Msa1171450 |
| chr8_1 | mRNA | 1055642 | 1056511 | 1055642 | ID=Msa1171450-mRNA-1;Parent=Msa1171450;Name=Msa1171450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|289 |
| chr8_1 | exon | 1055642 | 1056511 | 1055642 | ID=Msa1171450-mRNA-1:exon:340;Parent=Msa1171450-mRNA-1 |
| chr8_1 | CDS | 1055642 | 1056511 | 1055642 | ID=Msa1171450-mRNA-1:cds;Parent=Msa1171450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
