Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617900 | XP_003629713.1 | 94.167 | 120 | 5 | 2 | 1 | 118 | 1 | 120 | 2.96e-69 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617900 | G7LIL4 | 94.167 | 120 | 5 | 2 | 1 | 118 | 1 | 120 | 1.41e-69 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615490 | Msa0617900 | 0.805494 | 1.299415e-49 | -8.615850e-47 |
| Msa0617900 | Msa0639310 | 0.810689 | 1.017576e-50 | -8.615850e-47 |
| Msa0617900 | Msa0722020 | 0.819373 | 1.201717e-52 | -8.615850e-47 |
| Msa0617900 | Msa0894950 | 0.810166 | 1.319561e-50 | -8.615850e-47 |
| Msa0617900 | Msa1081930 | 0.809097 | 2.238904e-50 | -8.615850e-47 |
| Msa0617900 | Msa1091940 | 0.800620 | 1.323449e-48 | -8.615850e-47 |
| Msa0617900 | Msa1254730 | 0.811467 | 6.899560e-51 | -8.615850e-47 |
| Msa0617900 | Msa1296830 | 0.837897 | 3.962435e-57 | -8.615850e-47 |
| Msa0617900 | Msa1351540 | 0.800208 | 1.605318e-48 | -8.615850e-47 |
| Msa0617900 | Msa1365800 | 0.808717 | 2.699806e-50 | -8.615850e-47 |
| Msa0617900 | Msa1368530 | 0.803308 | 3.708449e-49 | -8.615850e-47 |
| Msa0617900 | Msa1376650 | 0.807302 | 5.402213e-50 | -8.615850e-47 |
| Msa0194480 | Msa0617900 | 0.804158 | 2.470502e-49 | -8.615850e-47 |
| Msa0209500 | Msa0617900 | 0.832058 | 1.173611e-55 | -8.615850e-47 |
| Msa0231980 | Msa0617900 | 0.815250 | 1.017950e-51 | -8.615850e-47 |
| Msa0232050 | Msa0617900 | 0.825741 | 3.973171e-54 | -8.615850e-47 |
| Msa0257490 | Msa0617900 | 0.805411 | 1.352623e-49 | -8.615850e-47 |
| Msa0510840 | Msa0617900 | 0.802940 | 4.420596e-49 | -8.615850e-47 |
| Msa0547160 | Msa0617900 | 0.805629 | 1.217513e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617900 | MtrunA17_Chr8g0378611 | 94.167 | 120 | 5 | 2 | 1 | 118 | 1 | 120 | 2.72e-73 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617900 | AT1G30845.1 | 68.644 | 118 | 37 | 0 | 1 | 118 | 1 | 118 | 2.67e-41 | 133 |
Find 112 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTTGGTTATATAAAATT+TGG | 0.129554 | 4_2:-68581055 | Msa0617900:three_prime_UTR |
| CTTTCATGCTTGCTTGTTAC+TGG | 0.144868 | 4_2:-68581970 | Msa0617900:three_prime_UTR |
| TTTGGCTGGGATTTAACTTA+TGG | 0.199741 | 4_2:-68581543 | Msa0617900:three_prime_UTR |
| CAATAAGAGAGTTGTTAATT+TGG | 0.203189 | 4_2:+68581817 | None:intergenic |
| CAACAAGTTCCTTCAATCTT+TGG | 0.222420 | 4_2:-68581386 | Msa0617900:three_prime_UTR |
| TTAACACCCACTTTGATTCT+TGG | 0.235318 | 4_2:+68581503 | None:intergenic |
| CTGTTGGTTATATAAAATTT+GGG | 0.251489 | 4_2:-68581054 | Msa0617900:three_prime_UTR |
| GATGAAATTGGTAGCGAAAT+TGG | 0.266316 | 4_2:+68584379 | None:intergenic |
| TCATCGAAAGTGTTTCTATT+TGG | 0.276303 | 4_2:-68581561 | Msa0617900:three_prime_UTR |
| GCTACCAATTTCATCTCTTC+TGG | 0.281584 | 4_2:-68584371 | Msa0617900:CDS |
| TGGGATTTAACTTATGGATT+TGG | 0.307197 | 4_2:-68581537 | Msa0617900:three_prime_UTR |
| GGTGCCTTACTCATAATAAT+TGG | 0.319313 | 4_2:-68582067 | Msa0617900:CDS |
| CCCACAATGAAGAAGAAATA+AGG | 0.330089 | 4_2:+68581312 | None:intergenic |
| CCTTATTTCTTCTTCATTGT+GGG | 0.333814 | 4_2:-68581312 | Msa0617900:three_prime_UTR |
| TTCCCCTTGATCCTTTGTTA+TGG | 0.343087 | 4_2:-68581409 | Msa0617900:three_prime_UTR |
| TTCATCTCTTCTGGTTTAGC+TGG | 0.343821 | 4_2:-68584362 | Msa0617900:CDS |
| TCATGTTCATGTGTCCTCTT+TGG | 0.346856 | 4_2:-68581676 | Msa0617900:three_prime_UTR |
| TCACGAATCACTCTCTTTCC+AGG | 0.347865 | 4_2:-68584327 | Msa0617900:intron |
| ACTGCGTACGGTGGAGGAAT+TGG | 0.349299 | 4_2:-68581450 | Msa0617900:three_prime_UTR |
| TTCTACCTCCCTAGATCATC+AGG | 0.351709 | 4_2:+68581200 | None:intergenic |
| TTTGGCAAGTGCTGCAGAAT+TGG | 0.363939 | 4_2:-68581368 | Msa0617900:three_prime_UTR |
| CGAAAGTGTTTCTATTTGGC+TGG | 0.383922 | 4_2:-68581557 | Msa0617900:three_prime_UTR |
| TAATTTGAATTGGACAGCTT+TGG | 0.391493 | 4_2:-68581643 | Msa0617900:three_prime_UTR |
| TCCTTGCATATCAAACAGTT+TGG | 0.391776 | 4_2:+68581120 | None:intergenic |
| AGAAGTAGTGGTGAGGGAAC+TGG | 0.392591 | 4_2:-68581271 | Msa0617900:three_prime_UTR |
| TACACCAATTATTATGAGTA+AGG | 0.393432 | 4_2:+68582063 | None:intergenic |
| TAAACCAGAAGAGATGAAAT+TGG | 0.399852 | 4_2:+68584367 | None:intergenic |
| GGTTGCAACCCTGATGATCT+AGG | 0.400366 | 4_2:-68581209 | Msa0617900:three_prime_UTR |
| TGTGGTTCTGTGGTGTAGTC+TGG | 0.401781 | 4_2:-68581777 | Msa0617900:three_prime_UTR |
| TCCTTATTTCTTCTTCATTG+TGG | 0.405483 | 4_2:-68581313 | Msa0617900:three_prime_UTR |
| CAAGAAGCAACTTGTTCAGC+AGG | 0.407329 | 4_2:+68581847 | None:intergenic |
| CAACTCAAGTATTGAGAAGA+AGG | 0.407633 | 4_2:-68582029 | Msa0617900:CDS |
| ATGCAGTTGCAGATGTGCTT+TGG | 0.411394 | 4_2:+68581947 | None:intergenic |
| AGAGTTGTTAATTTGGCAAA+AGG | 0.413408 | 4_2:+68581824 | None:intergenic |
| CAGAATTGGCTGTGACATAA+AGG | 0.419025 | 4_2:-68581354 | Msa0617900:three_prime_UTR |
| TTTCACATCTTCATTAAGTA+CGG | 0.421835 | 4_2:-68584485 | Msa0617900:CDS |
| TCAAGGGGAAGAACCCCTTC+AGG | 0.431877 | 4_2:+68581422 | None:intergenic |
| GAGTTGAGTCTTGGTACTAA+AGG | 0.438098 | 4_2:-68581230 | Msa0617900:three_prime_UTR |
| AATGCCGGTATTTATTTATG+TGG | 0.441329 | 4_2:-68581741 | Msa0617900:three_prime_UTR |
| CAGCACTTGCCAAAGATTGA+AGG | 0.454202 | 4_2:+68581377 | None:intergenic |
| GAAGTAGTGGTGAGGGAACT+GGG | 0.484698 | 4_2:-68581270 | Msa0617900:three_prime_UTR |
| ACATAAAGGCGACGAGGTCA+TGG | 0.488236 | 4_2:-68581340 | Msa0617900:three_prime_UTR |
| ATGGAGGGAGGAGGATCAAA+TGG | 0.489470 | 4_2:-68584578 | Msa0617900:CDS |
| TAAAATACCAAGAATCAAAG+TGG | 0.491153 | 4_2:-68581510 | Msa0617900:three_prime_UTR |
| TATGCGTGGGCAGTATCTGC+TGG | 0.492657 | 4_2:-68584548 | Msa0617900:CDS |
| GGAGGAGGATCAAATGGAAA+GGG | 0.494877 | 4_2:-68584572 | Msa0617900:CDS |
| GCGGAGACTGCGTACGGTGG+AGG | 0.494909 | 4_2:-68581456 | Msa0617900:three_prime_UTR |
| TTCACATCTTCATTAAGTAC+GGG | 0.499879 | 4_2:-68584484 | Msa0617900:CDS |
| CTTCATTAAGTACGGGTTCG+TGG | 0.500736 | 4_2:-68584477 | Msa0617900:CDS |
| TTATAAGTTGTCAAATCTGT+TGG | 0.503577 | 4_2:-68581070 | Msa0617900:three_prime_UTR |
| GATTTATTTATGTGGTTCTG+TGG | 0.510796 | 4_2:-68581787 | Msa0617900:three_prime_UTR |
| AAAGCTGAACTTAGCGAAGA+TGG | 0.512085 | 4_2:+68584505 | None:intergenic |
| GAACATGAACATGTAACATC+AGG | 0.513637 | 4_2:-68581924 | Msa0617900:three_prime_UTR |
| AGGTTTCATGTGCGGTAAAG+TGG | 0.524123 | 4_2:+68581867 | None:intergenic |
| GTTCTGTGGTGTAGTCTGGT+TGG | 0.525018 | 4_2:-68581773 | Msa0617900:three_prime_UTR |
| TGGTTAAATCCGTTGTATTG+CGG | 0.527638 | 4_2:-68581475 | Msa0617900:three_prime_UTR |
| CAGTAACAAGCAAGCATGAA+AGG | 0.531120 | 4_2:+68581971 | None:intergenic |
| GCGTACGGTGGAGGAATTGG+AGG | 0.543876 | 4_2:-68581447 | Msa0617900:three_prime_UTR |
| GAAAGTGTTTCTATTTGGCT+GGG | 0.545459 | 4_2:-68581556 | Msa0617900:three_prime_UTR |
| TCCAAACTGTTTGATATGCA+AGG | 0.547113 | 4_2:-68581121 | Msa0617900:three_prime_UTR |
| AACTGGGGAGGCCCATGTGG+AGG | 0.547897 | 4_2:-68581254 | Msa0617900:three_prime_UTR |
| AGAACCACATAAATAAATAC+CGG | 0.552341 | 4_2:+68581737 | None:intergenic |
| AGCGAAGATGGCTGCAAGAG+CGG | 0.553519 | 4_2:+68584517 | None:intergenic |
| AGACTCAACTCTCCTCCACA+TGG | 0.557257 | 4_2:+68581242 | None:intergenic |
| GGGAGGAGGATCAAATGGAA+AGG | 0.566048 | 4_2:-68584573 | Msa0617900:CDS |
| TTGCCATAACAAAGGATCAA+GGG | 0.566500 | 4_2:+68581406 | None:intergenic |
| CTGTTATGATTTCATGACAT+TGG | 0.567899 | 4_2:-68581699 | Msa0617900:three_prime_UTR |
| CATAAAGGCGACGAGGTCAT+GGG | 0.568285 | 4_2:-68581339 | Msa0617900:three_prime_UTR |
| CAAATGGAAAGGGGTATGCG+TGG | 0.570150 | 4_2:-68584562 | Msa0617900:CDS |
| GGGAACTGGGGAGGCCCATG+TGG | 0.571882 | 4_2:-68581257 | Msa0617900:three_prime_UTR |
| TGTGAATTGTGATCGAATCA+TGG | 0.573173 | 4_2:-68584597 | Msa0617900:exon |
| AACTGTTTGATATGCAAGGA+GGG | 0.574388 | 4_2:-68581117 | Msa0617900:three_prime_UTR |
| GATCGAATCATGGAGGGAGG+AGG | 0.576752 | 4_2:-68584587 | Msa0617900:exon |
| AGGAATTGGAGGATCCTGAA+GGG | 0.577329 | 4_2:-68581436 | Msa0617900:three_prime_UTR |
| GAGGAATTGGAGGATCCTGA+AGG | 0.580210 | 4_2:-68581437 | Msa0617900:three_prime_UTR |
| TGTGGAGGAGAGTTGAGTCT+TGG | 0.581870 | 4_2:-68581239 | Msa0617900:three_prime_UTR |
| GTACAAGAATGCAGAAGTAG+TGG | 0.582378 | 4_2:-68581283 | Msa0617900:three_prime_UTR |
| GTTGCAACCCTGATGATCTA+GGG | 0.585317 | 4_2:-68581208 | Msa0617900:three_prime_UTR |
| TGTTGGTTATATAAAATTTG+GGG | 0.588828 | 4_2:-68581053 | Msa0617900:three_prime_UTR |
| GACTACACAGCAGAAGATCA+AGG | 0.590993 | 4_2:+68581892 | None:intergenic |
| ATGATCTAGGGAGGTAGAAG+CGG | 0.593590 | 4_2:-68581196 | Msa0617900:three_prime_UTR |
| ATTAGAGAAAAGAACCAAAG+AGG | 0.593604 | 4_2:+68581662 | None:intergenic |
| GGTTGGTTTGAGATGAATGC+CGG | 0.599135 | 4_2:-68581756 | Msa0617900:three_prime_UTR |
| TGGTTATATAAAATTTGGGG+AGG | 0.604017 | 4_2:-68581050 | Msa0617900:three_prime_UTR |
| GACTCAACTCTCCTCCACAT+GGG | 0.605550 | 4_2:+68581243 | None:intergenic |
| TAGTGGTGAGGGAACTGGGG+AGG | 0.605894 | 4_2:-68581266 | Msa0617900:three_prime_UTR |
| TGTATTGCGGAGACTGCGTA+CGG | 0.606329 | 4_2:-68581462 | Msa0617900:three_prime_UTR |
| TTTCATGTGCGGTAAAGTGG+TGG | 0.606483 | 4_2:+68581870 | None:intergenic |
| AATCAAAGTGGGTGTTAAGT+CGG | 0.608079 | 4_2:-68581498 | Msa0617900:three_prime_UTR |
| GAATGCAGAAGTAGTGGTGA+GGG | 0.609987 | 4_2:-68581277 | Msa0617900:three_prime_UTR |
| AAATGGAAAGGGGTATGCGT+GGG | 0.616393 | 4_2:-68584561 | Msa0617900:CDS |
| TGCCATAACAAAGGATCAAG+GGG | 0.619972 | 4_2:+68581407 | None:intergenic |
| AAAATACCAAGAATCAAAGT+GGG | 0.620916 | 4_2:-68581509 | Msa0617900:three_prime_UTR |
| GAGGAGGATCAAATGGAAAG+GGG | 0.621136 | 4_2:-68584571 | Msa0617900:CDS |
| GTTGCCATAACAAAGGATCA+AGG | 0.621147 | 4_2:+68581405 | None:intergenic |
| GGAATTGGAGGATCCTGAAG+GGG | 0.622558 | 4_2:-68581435 | Msa0617900:three_prime_UTR |
| TGTTCAGCAGGTTTCATGTG+CGG | 0.623650 | 4_2:+68581859 | None:intergenic |
| AAGTAGTGGTGAGGGAACTG+GGG | 0.634765 | 4_2:-68581269 | Msa0617900:three_prime_UTR |
| ACGCAGTCTCCGCAATACAA+CGG | 0.637978 | 4_2:+68581466 | None:intergenic |
| CAAAGTGGGTGTTAAGTCGG+TGG | 0.638842 | 4_2:-68581495 | Msa0617900:three_prime_UTR |
| GGAACTTGTTGCCATAACAA+AGG | 0.642460 | 4_2:+68581398 | None:intergenic |
| AGAATGCAGAAGTAGTGGTG+AGG | 0.658557 | 4_2:-68581278 | Msa0617900:three_prime_UTR |
| TCTACCTCCCTAGATCATCA+GGG | 0.661085 | 4_2:+68581201 | None:intergenic |
| TGTGATCGAATCATGGAGGG+AGG | 0.668661 | 4_2:-68584590 | Msa0617900:exon |
| ATTGCGGAGACTGCGTACGG+TGG | 0.682362 | 4_2:-68581459 | Msa0617900:three_prime_UTR |
| AAACTGTTTGATATGCAAGG+AGG | 0.684769 | 4_2:-68581118 | Msa0617900:three_prime_UTR |
| GCAACCCTGATGATCTAGGG+AGG | 0.699478 | 4_2:-68581205 | Msa0617900:three_prime_UTR |
| AATTGTGATCGAATCATGGA+GGG | 0.700863 | 4_2:-68584593 | Msa0617900:exon |
| GTTGACATAACAACACCACA+TGG | 0.713568 | 4_2:+68584439 | None:intergenic |
| TATTCTTCAATGTAACCATG+TGG | 0.745608 | 4_2:-68584454 | Msa0617900:CDS |
| GCTGTGACATAAAGGCGACG+AGG | 0.776318 | 4_2:-68581346 | Msa0617900:three_prime_UTR |
| GAATTGTGATCGAATCATGG+AGG | 0.778419 | 4_2:-68584594 | Msa0617900:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGCTATTTTTTTTTTTTTT+TGG | - | chr4_2:68581598-68581617 | Msa0617900:three_prime_UTR | 10.0% |
| !!! | TTAATTTCTTAATTTTCTTT+GGG | + | chr4_2:68581643-68581662 | None:intergenic | 10.0% |
| !!! | TTTAATTTCTTAATTTTCTT+TGG | + | chr4_2:68581644-68581663 | None:intergenic | 10.0% |
| !! | CAATTATTTAGTTACAAATT+GGG | + | chr4_2:68581448-68581467 | None:intergenic | 15.0% |
| !! | TCAATTATTTAGTTACAAAT+TGG | + | chr4_2:68581449-68581468 | None:intergenic | 15.0% |
| !! | AAATAAACATACAGAATTAA+GGG | + | chr4_2:68581511-68581530 | None:intergenic | 15.0% |
| !! | TAAATAAACATACAGAATTA+AGG | + | chr4_2:68581512-68581531 | None:intergenic | 15.0% |
| !!! | GTTTTATTGATTTATTTATG+TGG | - | chr4_2:68583908-68583927 | Msa0617900:intron | 15.0% |
| !! | TTGAACAAACAAAATTGAAA+TGG | - | chr4_2:68581465-68581484 | Msa0617900:three_prime_UTR | 20.0% |
| !! | AAATTATCATCATATTGATG+GGG | + | chr4_2:68582670-68582689 | None:intergenic | 20.0% |
| !! | GAAATTATCATCATATTGAT+GGG | + | chr4_2:68582671-68582690 | None:intergenic | 20.0% |
| !! | TAAAAATCAGAAATCACTAT+TGG | - | chr4_2:68583028-68583047 | Msa0617900:intron | 20.0% |
| !! | TCTAAGGGTAAAATAAAATT+AGG | - | chr4_2:68583056-68583075 | Msa0617900:intron | 20.0% |
| !! | CTAAGGGTAAAATAAAATTA+GGG | - | chr4_2:68583057-68583076 | Msa0617900:intron | 20.0% |
| !!! | AAATCAAATTCGTTTGAAAT+TGG | - | chr4_2:68583165-68583184 | Msa0617900:intron | 20.0% |
| !!! | TTACTCATTTTCTTAAGAAA+TGG | + | chr4_2:68583352-68583371 | None:intergenic | 20.0% |
| !!! | TTCTTTTCTCTAATTTGAAT+TGG | - | chr4_2:68584050-68584069 | Msa0617900:intron | 20.0% |
| !!! | AGAAACTTGAGTTTTATTAA+AGG | - | chr4_2:68584530-68584549 | Msa0617900:CDS | 20.0% |
| !!! | GAAACTTGAGTTTTATTAAA+GGG | - | chr4_2:68584531-68584550 | Msa0617900:CDS | 20.0% |
| !!! | TCTGTTGGTTATATAAAATT+TGG | - | chr4_2:68584648-68584667 | Msa0617900:five_prime_UTR | 20.0% |
| !!! | CTGTTGGTTATATAAAATTT+GGG | - | chr4_2:68584649-68584668 | Msa0617900:five_prime_UTR | 20.0% |
| !!! | TGTTGGTTATATAAAATTTG+GGG | - | chr4_2:68584650-68584669 | Msa0617900:five_prime_UTR | 20.0% |
| ! | TTTCACATCTTCATTAAGTA+CGG | - | chr4_2:68581218-68581237 | Msa0617900:three_prime_UTR | 25.0% |
| ! | AAATAGCAAATCATGATACT+TGG | + | chr4_2:68581587-68581606 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGGTACAGAAAAG+AGG | - | chr4_2:68581611-68581630 | Msa0617900:three_prime_UTR | 25.0% |
| !!! | TTTTTTTGGTACAGAAAAGA+GGG | - | chr4_2:68581612-68581631 | Msa0617900:three_prime_UTR | 25.0% |
| !!! | AATTTTGACACTATCTACAT+CGG | + | chr4_2:68582174-68582193 | None:intergenic | 25.0% |
| ! | AGTTCAAAAATGATACGAAT+AGG | - | chr4_2:68582246-68582265 | Msa0617900:intron | 25.0% |
| !! | TTTCTTTTCTTTGAATTGCA+GGG | + | chr4_2:68582415-68582434 | None:intergenic | 25.0% |
| !! | ATTTCTTTTCTTTGAATTGC+AGG | + | chr4_2:68582416-68582435 | None:intergenic | 25.0% |
| ! | GGAAATTATCATCATATTGA+TGG | + | chr4_2:68582672-68582691 | None:intergenic | 25.0% |
| !!! | AATCATGATAAATTTCTGGT+TGG | + | chr4_2:68582955-68582974 | None:intergenic | 25.0% |
| ! | AGCAAATCATGATAAATTTC+TGG | + | chr4_2:68582959-68582978 | None:intergenic | 25.0% |
| !!! | TTTGCTATTAGTAGTACATA+TGG | - | chr4_2:68582973-68582992 | Msa0617900:intron | 25.0% |
| !! | TTGCTATTAGTAGTACATAT+GGG | - | chr4_2:68582974-68582993 | Msa0617900:intron | 25.0% |
| !!! | CAAACGAATTTGATTTTTCA+GGG | + | chr4_2:68583161-68583180 | None:intergenic | 25.0% |
| !!! | TCAAACGAATTTGATTTTTC+AGG | + | chr4_2:68583162-68583181 | None:intergenic | 25.0% |
| !! | TATGCATTTTTAACAGCAAA+CGG | + | chr4_2:68583193-68583212 | None:intergenic | 25.0% |
| !! | TTTTGATAAACACATGAGAA+GGG | + | chr4_2:68583451-68583470 | None:intergenic | 25.0% |
| !!! | ATTTTGATAAACACATGAGA+AGG | + | chr4_2:68583452-68583471 | None:intergenic | 25.0% |
| ! | CATGTGTTTATCAAAATAAG+TGG | - | chr4_2:68583455-68583474 | Msa0617900:intron | 25.0% |
| !! | AATAAACTGAAAGCATAAAG+AGG | + | chr4_2:68583569-68583588 | None:intergenic | 25.0% |
| ! | TACACCAATTATTATGAGTA+AGG | + | chr4_2:68583643-68583662 | None:intergenic | 25.0% |
| ! | CAATAAGAGAGTTGTTAATT+TGG | + | chr4_2:68583889-68583908 | None:intergenic | 25.0% |
| ! | AGAACCACATAAATAAATAC+CGG | + | chr4_2:68583969-68583988 | None:intergenic | 25.0% |
| !!! | TTTTTTAGTACAAACAGCTT+TGG | - | chr4_2:68584089-68584108 | Msa0617900:intron | 25.0% |
| ! | TAAAATACCAAGAATCAAAG+TGG | - | chr4_2:68584193-68584212 | Msa0617900:intron | 25.0% |
| ! | AAAATACCAAGAATCAAAGT+GGG | - | chr4_2:68584194-68584213 | Msa0617900:intron | 25.0% |
| ! | TTATAAGTTGTCAAATCTGT+TGG | - | chr4_2:68584633-68584652 | Msa0617900:five_prime_UTR | 25.0% |
| TTCACATCTTCATTAAGTAC+GGG | - | chr4_2:68581219-68581238 | Msa0617900:three_prime_UTR | 30.0% | |
| TATTCTTCAATGTAACCATG+TGG | - | chr4_2:68581249-68581268 | Msa0617900:three_prime_UTR | 30.0% | |
| TAAACCAGAAGAGATGAAAT+TGG | + | chr4_2:68581339-68581358 | None:intergenic | 30.0% | |
| CAAAGAAAATAGTTACTACC+TGG | + | chr4_2:68581397-68581416 | None:intergenic | 30.0% | |
| GAAACACACGTTACATATAA+TGG | + | chr4_2:68581536-68581555 | None:intergenic | 30.0% | |
| TGTTTCCAACTGCTTAATTT+GGG | - | chr4_2:68581550-68581569 | Msa0617900:three_prime_UTR | 30.0% | |
| GAAATTAAACGAACATTCCT+AGG | - | chr4_2:68581655-68581674 | Msa0617900:three_prime_UTR | 30.0% | |
| !! | ATTTTGTTTGAGGACATTTC+CGG | + | chr4_2:68581691-68581710 | None:intergenic | 30.0% |
| AGGAAATTGCAAGATTAATG+GGG | + | chr4_2:68581890-68581909 | None:intergenic | 30.0% | |
| CAGGAAATTGCAAGATTAAT+GGG | + | chr4_2:68581891-68581910 | None:intergenic | 30.0% | |
| ACAGGAAATTGCAAGATTAA+TGG | + | chr4_2:68581892-68581911 | None:intergenic | 30.0% | |
| ! | TCAAAATTTTGTGACACTTG+TGG | - | chr4_2:68582186-68582205 | Msa0617900:intron | 30.0% |
| ATGATACGAATAGGATCAAT+AGG | - | chr4_2:68582255-68582274 | Msa0617900:intron | 30.0% | |
| !! | AAATTTCTGGTTGGACAAAT+GGG | + | chr4_2:68582946-68582965 | None:intergenic | 30.0% |
| !! | TAAATTTCTGGTTGGACAAA+TGG | + | chr4_2:68582947-68582966 | None:intergenic | 30.0% |
| TAGTAGTACATATGGGATAA+AGG | - | chr4_2:68582981-68583000 | Msa0617900:intron | 30.0% | |
| AGCACAACAAAGCTATAAAT+TGG | + | chr4_2:68583009-68583028 | None:intergenic | 30.0% | |
| AATCAGAAATCACTATTGGT+TGG | - | chr4_2:68583032-68583051 | Msa0617900:intron | 30.0% | |
| ! | ATGCATTTTTAACAGCAAAC+GGG | + | chr4_2:68583192-68583211 | None:intergenic | 30.0% |
| TGCTGTTAAAAATGCATATG+CGG | - | chr4_2:68583195-68583214 | Msa0617900:intron | 30.0% | |
| GTTTGATAAACACATGAGAA+GGG | + | chr4_2:68583404-68583423 | None:intergenic | 30.0% | |
| AGTTTGATAAACACATGAGA+AGG | + | chr4_2:68583405-68583424 | None:intergenic | 30.0% | |
| AACAAAGTCTAAAGAATCTG+TGG | - | chr4_2:68583532-68583551 | Msa0617900:intron | 30.0% | |
| ! | TGCAAAGAAATGTTTTACAG+TGG | - | chr4_2:68583607-68583626 | Msa0617900:intron | 30.0% |
| ! | AGAGTTGTTAATTTGGCAAA+AGG | + | chr4_2:68583882-68583901 | None:intergenic | 30.0% |
| ! | GATTTATTTATGTGGTTCTG+TGG | - | chr4_2:68583916-68583935 | Msa0617900:intron | 30.0% |
| AATGCCGGTATTTATTTATG+TGG | - | chr4_2:68583962-68583981 | Msa0617900:intron | 30.0% | |
| CTGTTATGATTTCATGACAT+TGG | - | chr4_2:68584004-68584023 | Msa0617900:intron | 30.0% | |
| ATTAGAGAAAAGAACCAAAG+AGG | + | chr4_2:68584044-68584063 | None:intergenic | 30.0% | |
| TAATTTGAATTGGACAGCTT+TGG | - | chr4_2:68584060-68584079 | Msa0617900:intron | 30.0% | |
| !! | TCATCGAAAGTGTTTCTATT+TGG | - | chr4_2:68584142-68584161 | Msa0617900:intron | 30.0% |
| ! | TGGGATTTAACTTATGGATT+TGG | - | chr4_2:68584166-68584185 | Msa0617900:intron | 30.0% |
| ! | TCCTTATTTCTTCTTCATTG+TGG | - | chr4_2:68584390-68584409 | Msa0617900:CDS | 30.0% |
| ! | CCTTATTTCTTCTTCATTGT+GGG | - | chr4_2:68584391-68584410 | Msa0617900:CDS | 30.0% |
| TGGTTATATAAAATTTGGGG+AGG | - | chr4_2:68584653-68584672 | Msa0617900:five_prime_UTR | 30.0% | |
| TGTGAATTGTGATCGAATCA+TGG | - | chr4_2:68581106-68581125 | Msa0617900:three_prime_UTR | 35.0% | |
| AATTGTGATCGAATCATGGA+GGG | - | chr4_2:68581110-68581129 | Msa0617900:three_prime_UTR | 35.0% | |
| !! | GATGAAATTGGTAGCGAAAT+TGG | + | chr4_2:68581327-68581346 | None:intergenic | 35.0% |
| AAGGGTCATAATCATGACAT+TGG | + | chr4_2:68581493-68581512 | None:intergenic | 35.0% | |
| GTGTTTCCAACTGCTTAATT+TGG | - | chr4_2:68581549-68581568 | Msa0617900:three_prime_UTR | 35.0% | |
| !! | TTTTGTTTGAGGACATTTCC+GGG | + | chr4_2:68581690-68581709 | None:intergenic | 35.0% |
| !!! | TTTTGTGCCCATTGTTTTAG+AGG | + | chr4_2:68581737-68581756 | None:intergenic | 35.0% |
| ATAAATCATACCTTGCGTGA+AGG | + | chr4_2:68581808-68581827 | None:intergenic | 35.0% | |
| TCGAATTCGACGAATCAAAA+CGG | - | chr4_2:68581858-68581877 | Msa0617900:three_prime_UTR | 35.0% | |
| AAAGGTTATGTTCGGAAGAT+TGG | + | chr4_2:68582036-68582055 | None:intergenic | 35.0% | |
| AGTGGCTAAAAGGTTATGTT+CGG | + | chr4_2:68582044-68582063 | None:intergenic | 35.0% | |
| ! | AATTTTGTGACACTTGTGGT+AGG | - | chr4_2:68582190-68582209 | Msa0617900:intron | 35.0% |
| ! | GAACAAATCTATCTTTGAGG+AGG | + | chr4_2:68582292-68582311 | None:intergenic | 35.0% |
| GAGGAACAAATCTATCTTTG+AGG | + | chr4_2:68582295-68582314 | None:intergenic | 35.0% | |
| ! | CTATCTTTCTAGTGACATGT+TGG | + | chr4_2:68582332-68582351 | None:intergenic | 35.0% |
| AAACACAATCACGCAAAACA+TGG | - | chr4_2:68582484-68582503 | Msa0617900:intron | 35.0% | |
| ATTTGCCCTATTTGTGGTAA+TGG | + | chr4_2:68582525-68582544 | None:intergenic | 35.0% | |
| ATTACCACAAATAGGGCAAA+TGG | - | chr4_2:68582524-68582543 | Msa0617900:intron | 35.0% | |
| TTACCACAAATAGGGCAAAT+GGG | - | chr4_2:68582525-68582544 | Msa0617900:intron | 35.0% | |
| ! | AACGCCTTTTAACAAACTAC+CGG | + | chr4_2:68582578-68582597 | None:intergenic | 35.0% |
| ATAGAATCCAAACCTTCATG+TGG | + | chr4_2:68582614-68582633 | None:intergenic | 35.0% | |
| ATGAAGGTTTGGATTCTATG+AGG | - | chr4_2:68582615-68582634 | Msa0617900:intron | 35.0% | |
| AAGAAGATATGGGATTGGAA+AGG | + | chr4_2:68582642-68582661 | None:intergenic | 35.0% | |
| ATTGGAAGAAGATATGGGAT+TGG | + | chr4_2:68582647-68582666 | None:intergenic | 35.0% | |
| ATCATCATATTGATGGGGAT+TGG | + | chr4_2:68582665-68582684 | None:intergenic | 35.0% | |
| CAAGAGGAAGATGAGAATTT+AGG | - | chr4_2:68582814-68582833 | Msa0617900:intron | 35.0% | |
| AAGATGTTCTGATGGTTGAT+GGG | + | chr4_2:68582857-68582876 | None:intergenic | 35.0% | |
| AAAGATGTTCTGATGGTTGA+TGG | + | chr4_2:68582858-68582877 | None:intergenic | 35.0% | |
| GAAAAAAGAGATGAACCACA+AGG | - | chr4_2:68582918-68582937 | Msa0617900:intron | 35.0% | |
| !! | ATCACTATTGGTTGGTTCTA+AGG | - | chr4_2:68583040-68583059 | Msa0617900:intron | 35.0% |
| !! | TCACTATTGGTTGGTTCTAA+GGG | - | chr4_2:68583041-68583060 | Msa0617900:intron | 35.0% |
| AAAAATGCATATGCGGCAAA+CGG | - | chr4_2:68583202-68583221 | Msa0617900:intron | 35.0% | |
| ACATGAGAAGGGAAATACAA+TGG | + | chr4_2:68583393-68583412 | None:intergenic | 35.0% | |
| ACATGAGAAGGGAAATACAA+TGG | + | chr4_2:68583393-68583412 | None:intergenic | 35.0% | |
| AAGTCTAAAGAATCTGTGGT+TGG | - | chr4_2:68583536-68583555 | Msa0617900:intron | 35.0% | |
| !! | AATGTTTTACAGTGGTTTGC+AGG | - | chr4_2:68583615-68583634 | Msa0617900:intron | 35.0% |
| GGTGCCTTACTCATAATAAT+TGG | - | chr4_2:68583636-68583655 | Msa0617900:intron | 35.0% | |
| !! | CAACTCAAGTATTGAGAAGA+AGG | - | chr4_2:68583674-68583693 | Msa0617900:intron | 35.0% |
| GAACATGAACATGTAACATC+AGG | - | chr4_2:68583779-68583798 | Msa0617900:intron | 35.0% | |
| !! | GAAAGTGTTTCTATTTGGCT+GGG | - | chr4_2:68584147-68584166 | Msa0617900:intron | 35.0% |
| ! | TTTGGCTGGGATTTAACTTA+TGG | - | chr4_2:68584160-68584179 | Msa0617900:intron | 35.0% |
| TTAACACCCACTTTGATTCT+TGG | + | chr4_2:68584203-68584222 | None:intergenic | 35.0% | |
| AATCAAAGTGGGTGTTAAGT+CGG | - | chr4_2:68584205-68584224 | Msa0617900:intron | 35.0% | |
| TGGTTAAATCCGTTGTATTG+CGG | - | chr4_2:68584228-68584247 | Msa0617900:intron | 35.0% | |
| TTGCCATAACAAAGGATCAA+GGG | + | chr4_2:68584300-68584319 | None:intergenic | 35.0% | |
| CAACAAGTTCCTTCAATCTT+TGG | - | chr4_2:68584317-68584336 | Msa0617900:intron | 35.0% | |
| CCCACAATGAAGAAGAAATA+AGG | + | chr4_2:68584394-68584413 | None:intergenic | 35.0% | |
| TCCAAACTGTTTGATATGCA+AGG | - | chr4_2:68584582-68584601 | Msa0617900:exon | 35.0% | |
| TCCTTGCATATCAAACAGTT+TGG | + | chr4_2:68584586-68584605 | None:intergenic | 35.0% | |
| AAACTGTTTGATATGCAAGG+AGG | - | chr4_2:68584585-68584604 | Msa0617900:exon | 35.0% | |
| AACTGTTTGATATGCAAGGA+GGG | - | chr4_2:68584586-68584605 | Msa0617900:exon | 35.0% | |
| GAATTGTGATCGAATCATGG+AGG | - | chr4_2:68581109-68581128 | Msa0617900:three_prime_UTR | 40.0% | |
| AAAGCTGAACTTAGCGAAGA+TGG | + | chr4_2:68581201-68581220 | None:intergenic | 40.0% | |
| GTTGACATAACAACACCACA+TGG | + | chr4_2:68581267-68581286 | None:intergenic | 40.0% | |
| GCTACCAATTTCATCTCTTC+TGG | - | chr4_2:68581332-68581351 | Msa0617900:three_prime_UTR | 40.0% | |
| !! | TTCATCTCTTCTGGTTTAGC+TGG | - | chr4_2:68581341-68581360 | Msa0617900:three_prime_UTR | 40.0% |
| TCGATCCCAAATTAAGCAGT+TGG | + | chr4_2:68581558-68581577 | None:intergenic | 40.0% | |
| TTTGTTTGAGGACATTTCCG+GGG | + | chr4_2:68581689-68581708 | None:intergenic | 40.0% | |
| !! | GCTGCAGAGTATTTTGTTTG+AGG | + | chr4_2:68581701-68581720 | None:intergenic | 40.0% |
| TGATTTATTTGAACCTCCCC+AGG | - | chr4_2:68581820-68581839 | Msa0617900:three_prime_UTR | 40.0% | |
| AGATCTCATTGAACTTCCTG+GGG | + | chr4_2:68581839-68581858 | None:intergenic | 40.0% | |
| GAGATCTCATTGAACTTCCT+GGG | + | chr4_2:68581840-68581859 | None:intergenic | 40.0% | |
| CGAATTCGACGAATCAAAAC+GGG | - | chr4_2:68581859-68581878 | Msa0617900:three_prime_UTR | 40.0% | |
| GAATTCGACGAATCAAAACG+GGG | - | chr4_2:68581860-68581879 | Msa0617900:three_prime_UTR | 40.0% | |
| ! | AGGTTTTTCGCAACTCATTG+TGG | + | chr4_2:68581947-68581966 | None:intergenic | 40.0% |
| TTGCGAAAAACCTTGTCTTC+TGG | - | chr4_2:68581954-68581973 | Msa0617900:three_prime_UTR | 40.0% | |
| TTAAGGATAGCCAGAAGACA+AGG | + | chr4_2:68581967-68581986 | None:intergenic | 40.0% | |
| TGCTCTTTATGCTGAGATGT+GGG | + | chr4_2:68582004-68582023 | None:intergenic | 40.0% | |
| ATGCTCTTTATGCTGAGATG+TGG | + | chr4_2:68582005-68582024 | None:intergenic | 40.0% | |
| ! | GAATTGTGATGGGGCTTATA+AGG | + | chr4_2:68582118-68582137 | None:intergenic | 40.0% |
| GGTGAAACTGAATTGTGATG+GGG | + | chr4_2:68582127-68582146 | None:intergenic | 40.0% | |
| GGGTGAAACTGAATTGTGAT+GGG | + | chr4_2:68582128-68582147 | None:intergenic | 40.0% | |
| TGGGTGAAACTGAATTGTGA+TGG | + | chr4_2:68582129-68582148 | None:intergenic | 40.0% | |
| GAAAAGACCACATGGAGATT+GGG | + | chr4_2:68582148-68582167 | None:intergenic | 40.0% | |
| TTTGAACTTGTCCAAGCCAT+TGG | + | chr4_2:68582234-68582253 | None:intergenic | 40.0% | |
| ! | TCTTTGAGGAGGACTTTCAT+CGG | + | chr4_2:68582281-68582300 | None:intergenic | 40.0% |
| ATGTGATCTGTGCTTCTCAT+GGG | - | chr4_2:68582368-68582387 | Msa0617900:intron | 40.0% | |
| TTTCTTTGAATTGCAGGGAC+TGG | + | chr4_2:68582410-68582429 | None:intergenic | 40.0% | |
| !! | CCTATTTGTGGTAATGGAGA+CGG | + | chr4_2:68582519-68582538 | None:intergenic | 40.0% |
| CGTCTCCATTACCACAAATA+GGG | - | chr4_2:68582517-68582536 | Msa0617900:intron | 40.0% | |
| !! | TTCGCCGGTAGTTTGTTAAA+AGG | - | chr4_2:68582571-68582590 | Msa0617900:intron | 40.0% |
| TGGGGATTGGAAGAAGATAT+GGG | + | chr4_2:68582652-68582671 | None:intergenic | 40.0% | |
| ATGGGGATTGGAAGAAGATA+TGG | + | chr4_2:68582653-68582672 | None:intergenic | 40.0% | |
| ! | TGACAAGGCTAATCAGGTTT+TGG | + | chr4_2:68582796-68582815 | None:intergenic | 40.0% |
| TTCTCATCTTCCTCTTGACA+AGG | + | chr4_2:68582811-68582830 | None:intergenic | 40.0% | |
| CAGTGTGAAAGATGTTCTGA+TGG | + | chr4_2:68582865-68582884 | None:intergenic | 40.0% | |
| !!! | GTTGGCGAGTTTTTGGTTTT+CGG | - | chr4_2:68583107-68583126 | Msa0617900:intron | 40.0% |
| GAGAAGGGAAATACAATGGA+AGG | + | chr4_2:68583389-68583408 | None:intergenic | 40.0% | |
| GAGAAGGGAAATACAATGGA+AGG | + | chr4_2:68583389-68583408 | None:intergenic | 40.0% | |
| TAAGTGTAAAGGGAAGGGAA+GGG | + | chr4_2:68583505-68583524 | None:intergenic | 40.0% | |
| GTTTGCGAGCTAAGTGTAAA+GGG | + | chr4_2:68583515-68583534 | None:intergenic | 40.0% | |
| TGTTTGCGAGCTAAGTGTAA+AGG | + | chr4_2:68583516-68583535 | None:intergenic | 40.0% | |
| CAGTAACAAGCAAGCATGAA+AGG | + | chr4_2:68583735-68583754 | None:intergenic | 40.0% | |
| ! | CTTTCATGCTTGCTTGTTAC+TGG | - | chr4_2:68583733-68583752 | Msa0617900:intron | 40.0% |
| TCATGTTCATGTGTCCTCTT+TGG | - | chr4_2:68584027-68584046 | Msa0617900:intron | 40.0% | |
| !! | CGAAAGTGTTTCTATTTGGC+TGG | - | chr4_2:68584146-68584165 | Msa0617900:intron | 40.0% |
| TTCCCCTTGATCCTTTGTTA+TGG | - | chr4_2:68584294-68584313 | Msa0617900:intron | 40.0% | |
| TGCCATAACAAAGGATCAAG+GGG | + | chr4_2:68584299-68584318 | None:intergenic | 40.0% | |
| GTTGCCATAACAAAGGATCA+AGG | + | chr4_2:68584301-68584320 | None:intergenic | 40.0% | |
| !! | GGAACTTGTTGCCATAACAA+AGG | + | chr4_2:68584308-68584327 | None:intergenic | 40.0% |
| CAGAATTGGCTGTGACATAA+AGG | - | chr4_2:68584349-68584368 | Msa0617900:CDS | 40.0% | |
| GTACAAGAATGCAGAAGTAG+TGG | - | chr4_2:68584420-68584439 | Msa0617900:CDS | 40.0% | |
| GAGTTGAGTCTTGGTACTAA+AGG | - | chr4_2:68584473-68584492 | Msa0617900:CDS | 40.0% | |
| GGAGGAGGATCAAATGGAAA+GGG | - | chr4_2:68581131-68581150 | Msa0617900:three_prime_UTR | 45.0% | |
| GAGGAGGATCAAATGGAAAG+GGG | - | chr4_2:68581132-68581151 | Msa0617900:three_prime_UTR | 45.0% | |
| ! | AAATGGAAAGGGGTATGCGT+GGG | - | chr4_2:68581142-68581161 | Msa0617900:three_prime_UTR | 45.0% |
| CTTCATTAAGTACGGGTTCG+TGG | - | chr4_2:68581226-68581245 | Msa0617900:three_prime_UTR | 45.0% | |
| TCACGAATCACTCTCTTTCC+AGG | - | chr4_2:68581376-68581395 | Msa0617900:three_prime_UTR | 45.0% | |
| AAAATACTCTGCAGCTCCCT+TGG | - | chr4_2:68581706-68581725 | Msa0617900:three_prime_UTR | 45.0% | |
| !!! | TGTTTTAGAGGTCCCTCCAA+GGG | + | chr4_2:68581725-68581744 | None:intergenic | 45.0% |
| !!! | TTGTTTTAGAGGTCCCTCCA+AGG | + | chr4_2:68581726-68581745 | None:intergenic | 45.0% |
| !! | TGGAGGGACCTCTAAAACAA+TGG | - | chr4_2:68581726-68581745 | Msa0617900:three_prime_UTR | 45.0% |
| !! | GGAGGGACCTCTAAAACAAT+GGG | - | chr4_2:68581727-68581746 | Msa0617900:three_prime_UTR | 45.0% |
| ! | AAGGAAACAGAAGTGCAGAC+TGG | + | chr4_2:68581789-68581808 | None:intergenic | 45.0% |
| ACTTCTGTTTCCTTCACGCA+AGG | - | chr4_2:68581795-68581814 | Msa0617900:three_prime_UTR | 45.0% | |
| CGAGATCTCATTGAACTTCC+TGG | + | chr4_2:68581841-68581860 | None:intergenic | 45.0% | |
| GCTCTTTATGCTGAGATGTG+GGG | + | chr4_2:68582003-68582022 | None:intergenic | 45.0% | |
| TGGGGCTTATAAGGAGTCAA+TGG | + | chr4_2:68582109-68582128 | None:intergenic | 45.0% | |
| AGTTTCACCCAATCTCCATG+TGG | - | chr4_2:68582138-68582157 | Msa0617900:intron | 45.0% | |
| GGAAAAGACCACATGGAGAT+TGG | + | chr4_2:68582149-68582168 | None:intergenic | 45.0% | |
| TTGACACTATCTACATCGGC+TGG | + | chr4_2:68582170-68582189 | None:intergenic | 45.0% | |
| ACTTGTCCAAGCCATTGGAA+GGG | + | chr4_2:68582229-68582248 | None:intergenic | 45.0% | |
| AACTTGTCCAAGCCATTGGA+AGG | + | chr4_2:68582230-68582249 | None:intergenic | 45.0% | |
| ! | AGATTTGTTCCTCCACTTCC+AGG | - | chr4_2:68582302-68582321 | Msa0617900:intron | 45.0% |
| ! | GATTTGTTCCTCCACTTCCA+GGG | - | chr4_2:68582303-68582322 | Msa0617900:intron | 45.0% |
| TAGTGACATGTTGGAATCCC+TGG | + | chr4_2:68582323-68582342 | None:intergenic | 45.0% | |
| ACAGATCACATGAGGAGGAA+TGG | + | chr4_2:68582359-68582378 | None:intergenic | 45.0% | |
| ! | TGAGAAGCACAGATCACATG+AGG | + | chr4_2:68582367-68582386 | None:intergenic | 45.0% |
| CATGTGATCTGTGCTTCTCA+TGG | - | chr4_2:68582367-68582386 | Msa0617900:intron | 45.0% | |
| CACTAACCTGATCCAAACCT+GGG | - | chr4_2:68582455-68582474 | Msa0617900:intron | 45.0% | |
| TGATTGTGTTTACGCAACCC+AGG | + | chr4_2:68582475-68582494 | None:intergenic | 45.0% | |
| CCGTCTCCATTACCACAAAT+AGG | - | chr4_2:68582516-68582535 | Msa0617900:intron | 45.0% | |
| AAACTACCGGCGAAGTAGAT+GGG | + | chr4_2:68582565-68582584 | None:intergenic | 45.0% | |
| ATGTGCAGCTATCCACATGA+AGG | - | chr4_2:68582599-68582618 | Msa0617900:intron | 45.0% | |
| CAGCTATCCACATGAAGGTT+TGG | - | chr4_2:68582604-68582623 | Msa0617900:intron | 45.0% | |
| CCTGACACTATTGGATGGAA+AGG | + | chr4_2:68582744-68582763 | None:intergenic | 45.0% | |
| CCTTTCCATCCAATAGTGTC+AGG | - | chr4_2:68582741-68582760 | Msa0617900:intron | 45.0% | |
| ATGGTCCTGACACTATTGGA+TGG | + | chr4_2:68582749-68582768 | None:intergenic | 45.0% | |
| ACTGATGGTCCTGACACTAT+TGG | + | chr4_2:68582753-68582772 | None:intergenic | 45.0% | |
| !! | ACCTGATTAGCCTTGTCAAG+AGG | - | chr4_2:68582798-68582817 | Msa0617900:intron | 45.0% |
| TCCTCTTGACAAGGCTAATC+AGG | + | chr4_2:68582802-68582821 | None:intergenic | 45.0% | |
| ATATGTAGTCGTGTCCCTGT+AGG | - | chr4_2:68583085-68583104 | Msa0617900:intron | 45.0% | |
| CAAAAACTCGCCAACCTACA+GGG | + | chr4_2:68583102-68583121 | None:intergenic | 45.0% | |
| CTAAGTGTAAAGGGAAGGGA+AGG | + | chr4_2:68583506-68583525 | None:intergenic | 45.0% | |
| CGAGCTAAGTGTAAAGGGAA+GGG | + | chr4_2:68583510-68583529 | None:intergenic | 45.0% | |
| ATGCAGTTGCAGATGTGCTT+TGG | + | chr4_2:68583759-68583778 | None:intergenic | 45.0% | |
| GACTACACAGCAGAAGATCA+AGG | + | chr4_2:68583814-68583833 | None:intergenic | 45.0% | |
| TTTCATGTGCGGTAAAGTGG+TGG | + | chr4_2:68583836-68583855 | None:intergenic | 45.0% | |
| AGGTTTCATGTGCGGTAAAG+TGG | + | chr4_2:68583839-68583858 | None:intergenic | 45.0% | |
| TGTTCAGCAGGTTTCATGTG+CGG | + | chr4_2:68583847-68583866 | None:intergenic | 45.0% | |
| ! | CAAGAAGCAACTTGTTCAGC+AGG | + | chr4_2:68583859-68583878 | None:intergenic | 45.0% |
| !! | GGTTGGTTTGAGATGAATGC+CGG | - | chr4_2:68583947-68583966 | Msa0617900:intron | 45.0% |
| AGGAATTGGAGGATCCTGAA+GGG | - | chr4_2:68584267-68584286 | Msa0617900:intron | 45.0% | |
| CAGCACTTGCCAAAGATTGA+AGG | + | chr4_2:68584329-68584348 | None:intergenic | 45.0% | |
| ! | TTTGGCAAGTGCTGCAGAAT+TGG | - | chr4_2:68584335-68584354 | Msa0617900:CDS | 45.0% |
| AGAATGCAGAAGTAGTGGTG+AGG | - | chr4_2:68584425-68584444 | Msa0617900:CDS | 45.0% | |
| GAATGCAGAAGTAGTGGTGA+GGG | - | chr4_2:68584426-68584445 | Msa0617900:CDS | 45.0% | |
| GTTGCAACCCTGATGATCTA+GGG | - | chr4_2:68584495-68584514 | Msa0617900:CDS | 45.0% | |
| TCTACCTCCCTAGATCATCA+GGG | + | chr4_2:68584505-68584524 | None:intergenic | 45.0% | |
| TTCTACCTCCCTAGATCATC+AGG | + | chr4_2:68584506-68584525 | None:intergenic | 45.0% | |
| ATGATCTAGGGAGGTAGAAG+CGG | - | chr4_2:68584507-68584526 | Msa0617900:CDS | 45.0% | |
| TGTGATCGAATCATGGAGGG+AGG | - | chr4_2:68581113-68581132 | Msa0617900:three_prime_UTR | 50.0% | |
| ATGGAGGGAGGAGGATCAAA+TGG | - | chr4_2:68581125-68581144 | Msa0617900:three_prime_UTR | 50.0% | |
| GGGAGGAGGATCAAATGGAA+AGG | - | chr4_2:68581130-68581149 | Msa0617900:three_prime_UTR | 50.0% | |
| ! | CAAATGGAAAGGGGTATGCG+TGG | - | chr4_2:68581141-68581160 | Msa0617900:three_prime_UTR | 50.0% |
| ATTCCTAGGCATGCAAACCC+CGG | - | chr4_2:68581669-68581688 | Msa0617900:three_prime_UTR | 50.0% | |
| TCTCATTGAACTTCCTGGGG+AGG | + | chr4_2:68581836-68581855 | None:intergenic | 50.0% | |
| ! | CTGCTAGTGGACATGGTAAC+AGG | + | chr4_2:68581910-68581929 | None:intergenic | 50.0% |
| TACCATGTCCACTAGCAGCT+TGG | - | chr4_2:68581912-68581931 | Msa0617900:three_prime_UTR | 50.0% | |
| GAGATGTGGGGCATGTATGA+GGG | + | chr4_2:68581991-68582010 | None:intergenic | 50.0% | |
| TGAGATGTGGGGCATGTATG+AGG | + | chr4_2:68581992-68582011 | None:intergenic | 50.0% | |
| ! | ACCTTTTAGCCACTGACCGT+TGG | - | chr4_2:68582050-68582069 | Msa0617900:CDS | 50.0% |
| TCCAACGGTCAGTGGCTAAA+AGG | + | chr4_2:68582054-68582073 | None:intergenic | 50.0% | |
| GACCGTTGGAGTCTCGAATA+AGG | - | chr4_2:68582064-68582083 | Msa0617900:CDS | 50.0% | |
| !! | GGCCTTATTCGAGACTCCAA+CGG | + | chr4_2:68582069-68582088 | None:intergenic | 50.0% |
| AATGGACATCGCAGGTTGTG+GGG | + | chr4_2:68582091-68582110 | None:intergenic | 50.0% | |
| CAATGGACATCGCAGGTTGT+GGG | + | chr4_2:68582092-68582111 | None:intergenic | 50.0% | |
| TCAATGGACATCGCAGGTTG+TGG | + | chr4_2:68582093-68582112 | None:intergenic | 50.0% | |
| AAGGAGTCAATGGACATCGC+AGG | + | chr4_2:68582099-68582118 | None:intergenic | 50.0% | |
| ATCGGCTGGAAAAGACCACA+TGG | + | chr4_2:68582156-68582175 | None:intergenic | 50.0% | |
| TGTGACACTTGTGGTAGGTG+AGG | - | chr4_2:68582195-68582214 | Msa0617900:intron | 50.0% | |
| CTTGTCCAAGCCATTGGAAG+GGG | + | chr4_2:68582228-68582247 | None:intergenic | 50.0% | |
| CATGTTGGAATCCCTGGAAG+TGG | + | chr4_2:68582317-68582336 | None:intergenic | 50.0% | |
| GAAGCACAGATCACATGAGG+AGG | + | chr4_2:68582364-68582383 | None:intergenic | 50.0% | |
| ATCTGTGCTTCTCATGGGTG+AGG | - | chr4_2:68582373-68582392 | Msa0617900:intron | 50.0% | |
| CCAGGTTTGGATCAGGTTAG+TGG | + | chr4_2:68582457-68582476 | None:intergenic | 50.0% | |
| CCACTAACCTGATCCAAACC+TGG | - | chr4_2:68582454-68582473 | Msa0617900:intron | 50.0% | |
| GTGTTTACGCAACCCAGGTT+TGG | + | chr4_2:68582470-68582489 | None:intergenic | 50.0% | |
| TCGCCCATTTGCCCTATTTG+TGG | + | chr4_2:68582531-68582550 | None:intergenic | 50.0% | |
| CAATTCCCCATCTACTTCGC+CGG | - | chr4_2:68582556-68582575 | Msa0617900:intron | 50.0% | |
| AACTACCGGCGAAGTAGATG+GGG | + | chr4_2:68582564-68582583 | None:intergenic | 50.0% | |
| CAAACTACCGGCGAAGTAGA+TGG | + | chr4_2:68582566-68582585 | None:intergenic | 50.0% | |
| TCAGGACCATCAGTGTCCAT+GGG | - | chr4_2:68582759-68582778 | Msa0617900:intron | 50.0% | |
| !! | TTCTGATGGTTGATGGGTCG+TGG | + | chr4_2:68582851-68582870 | None:intergenic | 50.0% |
| ! | TTGGACAAATGGGCTCCTTG+TGG | + | chr4_2:68582936-68582955 | None:intergenic | 50.0% |
| CCAAAAACTCGCCAACCTAC+AGG | + | chr4_2:68583103-68583122 | None:intergenic | 50.0% | |
| !! | CCTGTAGGTTGGCGAGTTTT+TGG | - | chr4_2:68583100-68583119 | Msa0617900:intron | 50.0% |
| GCGAGCTAAGTGTAAAGGGA+AGG | + | chr4_2:68583511-68583530 | None:intergenic | 50.0% | |
| ! | TGTGGTTCTGTGGTGTAGTC+TGG | - | chr4_2:68583926-68583945 | Msa0617900:intron | 50.0% |
| GTTCTGTGGTGTAGTCTGGT+TGG | - | chr4_2:68583930-68583949 | Msa0617900:intron | 50.0% | |
| CAAAGTGGGTGTTAAGTCGG+TGG | - | chr4_2:68584208-68584227 | Msa0617900:intron | 50.0% | |
| ACGCAGTCTCCGCAATACAA+CGG | + | chr4_2:68584240-68584259 | None:intergenic | 50.0% | |
| TGTATTGCGGAGACTGCGTA+CGG | - | chr4_2:68584241-68584260 | Msa0617900:intron | 50.0% | |
| GAGGAATTGGAGGATCCTGA+AGG | - | chr4_2:68584266-68584285 | Msa0617900:intron | 50.0% | |
| GGAATTGGAGGATCCTGAAG+GGG | - | chr4_2:68584268-68584287 | Msa0617900:intron | 50.0% | |
| ACATAAAGGCGACGAGGTCA+TGG | - | chr4_2:68584363-68584382 | Msa0617900:CDS | 50.0% | |
| CATAAAGGCGACGAGGTCAT+GGG | - | chr4_2:68584364-68584383 | Msa0617900:CDS | 50.0% | |
| AGAAGTAGTGGTGAGGGAAC+TGG | - | chr4_2:68584432-68584451 | Msa0617900:CDS | 50.0% | |
| GAAGTAGTGGTGAGGGAACT+GGG | - | chr4_2:68584433-68584452 | Msa0617900:CDS | 50.0% | |
| AAGTAGTGGTGAGGGAACTG+GGG | - | chr4_2:68584434-68584453 | Msa0617900:CDS | 50.0% | |
| GACTCAACTCTCCTCCACAT+GGG | + | chr4_2:68584463-68584482 | None:intergenic | 50.0% | |
| AGACTCAACTCTCCTCCACA+TGG | + | chr4_2:68584464-68584483 | None:intergenic | 50.0% | |
| TGTGGAGGAGAGTTGAGTCT+TGG | - | chr4_2:68584464-68584483 | Msa0617900:CDS | 50.0% | |
| GGTTGCAACCCTGATGATCT+AGG | - | chr4_2:68584494-68584513 | Msa0617900:CDS | 50.0% | |
| GATCGAATCATGGAGGGAGG+AGG | - | chr4_2:68581116-68581135 | Msa0617900:three_prime_UTR | 55.0% | |
| TATGCGTGGGCAGTATCTGC+TGG | - | chr4_2:68581155-68581174 | Msa0617900:three_prime_UTR | 55.0% | |
| AGCGAAGATGGCTGCAAGAG+CGG | + | chr4_2:68581189-68581208 | None:intergenic | 55.0% | |
| TTTCCGGGGTTTGCATGCCT+AGG | + | chr4_2:68581675-68581694 | None:intergenic | 55.0% | |
| ATACTCTGCAGCTCCCTTGG+AGG | - | chr4_2:68581709-68581728 | Msa0617900:three_prime_UTR | 55.0% | |
| TACTCTGCAGCTCCCTTGGA+GGG | - | chr4_2:68581710-68581729 | Msa0617900:three_prime_UTR | 55.0% | |
| ! | CTCCAAGCTGCTAGTGGACA+TGG | + | chr4_2:68581917-68581936 | None:intergenic | 55.0% |
| AAGCGACTCCAAGCTGCTAG+TGG | + | chr4_2:68581923-68581942 | None:intergenic | 55.0% | |
| GGGGCATGTATGAGGGCTTA+AGG | + | chr4_2:68581984-68582003 | None:intergenic | 55.0% | |
| TTCGAGACTCCAACGGTCAG+TGG | + | chr4_2:68582062-68582081 | None:intergenic | 55.0% | |
| ATGGACATCGCAGGTTGTGG+GGG | + | chr4_2:68582090-68582109 | None:intergenic | 55.0% | |
| AGGATGTTCGCCCCTTCCAA+TGG | - | chr4_2:68582215-68582234 | Msa0617900:intron | 55.0% | |
| GTTGGAATCCCTGGAAGTGG+AGG | + | chr4_2:68582314-68582333 | None:intergenic | 55.0% | |
| ACGCAACCCAGGTTTGGATC+AGG | + | chr4_2:68582464-68582483 | None:intergenic | 55.0% | |
| CGGCGAAGTAGATGGGGAAT+TGG | + | chr4_2:68582558-68582577 | None:intergenic | 55.0% | |
| AGCGCGTACGATCTTCAACG+AGG | + | chr4_2:68582693-68582712 | None:intergenic | 55.0% | |
| GTTGAAGATCGTACGCGCTC+TGG | - | chr4_2:68582694-68582713 | Msa0617900:intron | 55.0% | |
| GTCAGGACCATCAGTGTCCA+TGG | - | chr4_2:68582758-68582777 | Msa0617900:intron | 55.0% | |
| !! | AGTGTCCATGGGTGCTGGAA+GGG | - | chr4_2:68582770-68582789 | Msa0617900:intron | 55.0% |
| GTAGTCGTGTCCCTGTAGGT+TGG | - | chr4_2:68583089-68583108 | Msa0617900:intron | 55.0% | |
| ACTGCGTACGGTGGAGGAAT+TGG | - | chr4_2:68584253-68584272 | Msa0617900:intron | 55.0% | |
| TCAAGGGGAAGAACCCCTTC+AGG | + | chr4_2:68584284-68584303 | None:intergenic | 55.0% | |
| GCTGTGACATAAAGGCGACG+AGG | - | chr4_2:68584357-68584376 | Msa0617900:CDS | 55.0% | |
| GCAACCCTGATGATCTAGGG+AGG | - | chr4_2:68584498-68584517 | Msa0617900:CDS | 55.0% | |
| GTTCGCCCCTTCCAATGGCT+TGG | - | chr4_2:68582220-68582239 | Msa0617900:intron | 60.0% | |
| ! | ACGCGCTCTGGACTGTGAAG+TGG | - | chr4_2:68582706-68582725 | Msa0617900:intron | 60.0% |
| CCAGCACCCATGGACACTGA+TGG | + | chr4_2:68582768-68582787 | None:intergenic | 60.0% | |
| CCATCAGTGTCCATGGGTGC+TGG | - | chr4_2:68582765-68582784 | Msa0617900:intron | 60.0% | |
| !! | CAGTGTCCATGGGTGCTGGA+AGG | - | chr4_2:68582769-68582788 | Msa0617900:intron | 60.0% |
| TTTGGCCCTTCCAGCACCCA+TGG | + | chr4_2:68582778-68582797 | None:intergenic | 60.0% | |
| ATTGCGGAGACTGCGTACGG+TGG | - | chr4_2:68584244-68584263 | Msa0617900:intron | 60.0% | |
| GCGTACGGTGGAGGAATTGG+AGG | - | chr4_2:68584256-68584275 | Msa0617900:intron | 60.0% | |
| TAGTGGTGAGGGAACTGGGG+AGG | - | chr4_2:68584437-68584456 | Msa0617900:CDS | 60.0% | |
| AACTGGGGAGGCCCATGTGG+AGG | - | chr4_2:68584449-68584468 | Msa0617900:CDS | 65.0% | |
| GCGGAGACTGCGTACGGTGG+AGG | - | chr4_2:68584247-68584266 | Msa0617900:intron | 70.0% | |
| GGGAACTGGGGAGGCCCATG+TGG | - | chr4_2:68584446-68584465 | Msa0617900:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 68581044 | 68584681 | 68581044 | ID=Msa0617900;Name=Msa0617900 |
| chr4_2 | mRNA | 68581044 | 68584681 | 68581044 | ID=Msa0617900-mRNA-1;Parent=Msa0617900;Name=Msa0617900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=81|1|1|1|0|0.5|2|971|118 |
| chr4_2 | exon | 68581044 | 68582098 | 68581044 | ID=Msa0617900-mRNA-1:exon:19745;Parent=Msa0617900-mRNA-1 |
| chr4_2 | exon | 68584328 | 68584681 | 68584328 | ID=Msa0617900-mRNA-1:exon:19744;Parent=Msa0617900-mRNA-1 |
| chr4_2 | five_prime_UTR | 68584601 | 68584681 | 68584601 | ID=Msa0617900-mRNA-1:five_prime_utr;Parent=Msa0617900-mRNA-1 |
| chr4_2 | CDS | 68584328 | 68584600 | 68584328 | ID=Msa0617900-mRNA-1:cds;Parent=Msa0617900-mRNA-1 |
| chr4_2 | CDS | 68582015 | 68582098 | 68582015 | ID=Msa0617900-mRNA-1:cds;Parent=Msa0617900-mRNA-1 |
| chr4_2 | three_prime_UTR | 68581044 | 68582014 | 68581044 | ID=Msa0617900-mRNA-1:three_prime_utr;Parent=Msa0617900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
