AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0232050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0232050 MtrunA17_Chr2g0278661 93.852 244 1 1 1 230 1 244 1.89e-149 416
Msa0232050 MtrunA17_Chr4g0050781 57.741 239 59 5 1 228 1 208 3.04e-64 198
Msa0232050 MtrunA17_Chr1g0210241 39.419 241 110 7 1 211 1 235 1.24e-33 122
Msa0232050 MtrunA17_Chr4g0035001 58.333 84 34 1 1 84 1 83 1.16e-29 108
Msa0232050 MtrunA17_Chr4g0035051 56.962 79 34 0 6 84 7 85 9.95e-28 102
Msa0232050 MtrunA17_Chr4g0035031 56.250 80 35 0 6 85 7 86 4.40e-27 102
Msa0232050 MtrunA17_Chr7g0266751 46.988 83 44 0 7 89 32 114 4.51e-22 88.2
Msa0232050 MtrunA17_Chr3g0086861 42.857 84 48 0 1 84 38 121 3.17e-20 88.6
Msa0232050 MtrunA17_Chr4g0061451 41.667 84 49 0 1 84 36 119 1.43e-18 82.0
Msa0232050 MtrunA17_Chr7g0219021 46.053 76 41 0 8 83 41 116 1.87e-18 81.3
Msa0232050 MtrunA17_Chr3g0116631 47.436 78 41 0 7 84 206 283 9.91e-18 80.1
Msa0232050 MtrunA17_Chr3g0116631 36.905 84 53 0 8 91 110 193 1.48e-11 62.8
Msa0232050 MtrunA17_Chr7g0263001 47.561 82 43 0 8 89 36 117 1.45e-17 76.3
Msa0232050 MtrunA17_Chr3g0121631 50.000 76 37 1 8 83 37 111 2.28e-17 75.9
Msa0232050 MtrunA17_Chr1g0198431 41.463 82 48 0 8 89 193 274 6.42e-17 77.8
Msa0232050 MtrunA17_Chr3g0119311 45.122 82 43 1 8 87 37 118 8.51e-17 74.3
Msa0232050 MtrunA17_Chr7g0276531 48.611 72 33 1 3 70 14 85 2.14e-16 75.9
Msa0232050 MtrunA17_Chr1g0168601 40.506 79 47 0 6 84 152 230 2.89e-16 75.1
Msa0232050 MtrunA17_Chr3g0101061 39.583 96 50 2 3 95 36 126 8.09e-16 75.9
Msa0232050 MtrunA17_Chr8g0346011 44.595 74 40 1 3 76 33 105 9.43e-16 74.7
Msa0232050 MtrunA17_Chr3g0088511 37.255 102 52 2 8 97 33 134 1.56e-15 70.9
Msa0232050 MtrunA17_Chr1g0181111 46.053 76 41 0 8 83 197 272 3.93e-15 72.8
Msa0232050 MtrunA17_Chr1g0181111 38.318 107 66 0 8 114 85 191 2.83e-12 64.7
Msa0232050 MtrunA17_Chr6g0481071 39.773 88 48 1 8 90 96 183 4.69e-15 70.9
Msa0232050 MtrunA17_Chr2g0290191 41.860 86 45 2 8 93 5 85 5.81e-15 73.2
Msa0232050 MtrunA17_Chr4g0017401 45.070 71 38 1 3 72 12 82 8.52e-15 71.6
Msa0232050 MtrunA17_Chr3g0144311 50.000 58 29 0 3 60 25 82 2.69e-14 70.5
Msa0232050 MtrunA17_Chr5g0447761 37.363 91 52 2 3 93 2 87 2.90e-14 71.2
Msa0232050 MtrunA17_Chr4g0058151 37.647 85 53 0 4 88 119 203 8.68e-14 69.3
Msa0232050 MtrunA17_Chr4g0058151 41.026 78 46 0 7 84 216 293 3.61e-13 67.4
Msa0232050 MtrunA17_Chr1g0186351 38.272 81 48 1 3 83 2 80 9.97e-14 69.7
Msa0232050 MtrunA17_Chr1g0186351 35.443 79 50 1 8 86 113 190 9.77e-13 66.6
Msa0232050 MtrunA17_Chr5g0426311 41.892 74 42 1 3 76 12 84 1.17e-13 68.6
Msa0232050 MtrunA17_Chr3g0120721 37.500 88 52 1 2 86 98 185 1.58e-13 68.9
Msa0232050 MtrunA17_Chr7g0267571 40.789 76 45 0 8 83 213 288 3.42e-13 67.8
Msa0232050 MtrunA17_Chr7g0268551 41.096 73 43 0 9 81 350 422 5.34e-13 67.4
Msa0232050 MtrunA17_Chr4g0042161 41.558 77 45 0 9 85 53 129 7.60e-13 63.9
Msa0232050 MtrunA17_Chr2g0327921 35.802 81 52 0 8 88 8 88 8.31e-13 62.4
Msa0232050 MtrunA17_Chr6g0449481 34.177 79 52 0 8 86 134 212 1.20e-12 66.2
Msa0232050 MtrunA17_Chr3g0127751 41.892 74 42 1 3 76 22 94 2.00e-12 64.7
Msa0232050 MtrunA17_Chr1g0177101 39.474 76 46 0 8 83 208 283 2.40e-12 65.1
Msa0232050 MtrunA17_Chr8g0371201 35.417 96 62 0 9 104 64 159 3.33e-12 64.3
Msa0232050 MtrunA17_Chr4g0031091 37.662 77 48 0 8 84 34 110 5.01e-12 60.8
Msa0232050 MtrunA17_Chr7g0219031 38.356 73 40 1 8 80 41 108 1.72e-11 59.7
Msa0232050 MtrunA17_Chr4g0065741 33.735 83 55 0 8 90 72 154 3.18e-11 60.1
Msa0232050 MtrunA17_Chr5g0406171 35.526 76 49 0 9 84 133 208 4.52e-11 61.2
Msa0232050 MtrunA17_Chr3g0110211 44.737 76 41 1 9 83 114 189 5.06e-11 61.6
Msa0232050 MtrunA17_Chr5g0429721 32.000 75 51 0 9 83 38 112 6.70e-11 61.2
Msa0232050 MtrunA17_Chr6g0484281 26.415 159 87 2 9 156 245 384 7.92e-11 61.2
Msa0232050 MtrunA17_Chr3g0080801 25.000 128 79 1 9 136 70 180 9.17e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0232050 AT3G26420.1 54.231 260 70 9 1 228 1 243 4.98e-63 197
Msa0232050 AT2G21660.2 62.025 79 30 0 6 84 7 85 1.05e-29 108
Msa0232050 AT4G39260.3 56.818 88 37 1 1 88 1 87 1.38e-29 106
Msa0232050 AT1G60650.2 39.568 139 66 2 6 140 11 135 3.24e-29 111
Msa0232050 AT1G60650.1 39.568 139 66 2 6 140 11 135 3.24e-29 111
Msa0232050 AT5G04280.1 40.571 175 93 4 1 164 1 175 1.02e-27 107
Msa0232050 AT4G39260.2 57.143 84 35 1 1 84 1 83 1.92e-27 102
Msa0232050 AT4G39260.4 55.072 69 30 1 1 69 1 68 4.59e-20 82.4
Msa0232050 AT4G13850.3 51.190 84 39 1 8 89 36 119 6.50e-20 83.2
Msa0232050 AT4G13850.4 53.247 77 36 0 8 84 36 112 6.92e-20 82.4
Msa0232050 AT4G13850.1 51.190 84 39 1 8 89 36 119 9.17e-20 83.2
Msa0232050 AT5G61030.2 50.000 76 38 0 8 83 41 116 2.46e-19 85.1
Msa0232050 AT5G61030.1 50.000 76 38 0 8 83 41 116 2.46e-19 85.1
Msa0232050 AT5G06210.1 46.914 81 43 0 8 88 35 115 8.20e-19 80.1
Msa0232050 AT4G24770.1 48.718 78 40 0 7 84 244 321 4.18e-18 82.0
Msa0232050 AT4G24770.1 39.773 88 53 0 4 91 147 234 7.88e-15 72.8
Msa0232050 AT4G24770.2 48.718 78 40 0 7 84 244 321 4.18e-18 82.0
Msa0232050 AT4G24770.2 39.773 88 53 0 4 91 147 234 7.88e-15 72.8
Msa0232050 AT5G04280.3 44.762 105 52 2 39 137 1 105 1.00e-17 80.1
Msa0232050 AT5G04280.4 44.762 105 52 2 39 137 1 105 1.00e-17 80.1
Msa0232050 AT5G04280.5 44.762 105 52 2 39 137 1 105 1.00e-17 80.1
Msa0232050 AT5G04280.2 44.762 105 52 2 39 137 1 105 1.00e-17 80.1
Msa0232050 AT3G23830.2 45.679 81 44 0 8 88 36 116 1.03e-17 77.0
Msa0232050 AT3G23830.1 45.679 81 44 0 8 88 36 116 1.03e-17 77.0
Msa0232050 AT1G18630.1 51.316 76 37 0 8 83 37 112 1.65e-17 77.0
Msa0232050 AT3G53460.1 46.753 77 41 0 8 84 258 334 2.12e-17 80.1
Msa0232050 AT3G53460.3 46.753 77 41 0 8 84 258 334 2.12e-17 80.1
Msa0232050 AT3G53460.2 46.753 77 41 0 8 84 258 334 2.12e-17 80.1
Msa0232050 AT2G37220.1 46.753 77 41 0 8 84 205 281 2.35e-17 79.3
Msa0232050 AT2G37220.1 36.667 90 57 0 2 91 86 175 1.90e-13 68.6
Msa0232050 AT3G53460.4 46.753 77 41 0 8 84 279 355 3.41e-17 79.7
Msa0232050 AT1G33470.3 53.125 64 30 0 1 64 1 64 5.23e-17 77.8
Msa0232050 AT1G33470.2 53.125 64 30 0 1 64 1 64 7.28e-17 77.4
Msa0232050 AT1G33470.1 53.125 64 30 0 1 64 1 64 7.32e-17 77.4
Msa0232050 AT5G59865.1 40.777 103 51 1 2 94 11 113 8.66e-17 73.9
Msa0232050 AT4G26650.1 42.553 94 52 1 2 95 10 101 1.51e-16 78.2
Msa0232050 AT4G26650.2 42.553 94 52 1 2 95 7 98 1.62e-16 78.2
Msa0232050 AT3G13224.2 37.500 104 62 1 8 108 110 213 2.58e-16 77.0
Msa0232050 AT2G46780.1 46.667 75 39 1 2 76 17 90 4.25e-16 76.3
Msa0232050 AT2G46780.2 46.667 75 39 1 2 76 17 90 4.25e-16 76.3
Msa0232050 AT1G60650.3 38.318 107 48 2 38 140 6 98 5.30e-16 75.1
Msa0232050 AT3G07810.2 39.130 92 51 2 3 94 2 88 5.47e-16 76.6
Msa0232050 AT3G07810.2 34.177 79 51 1 8 86 109 186 9.52e-11 61.2
Msa0232050 AT1G74230.1 47.368 76 39 1 8 83 35 109 5.92e-16 75.5
Msa0232050 AT3G13224.3 37.500 104 62 1 8 108 101 204 5.94e-16 76.3
Msa0232050 AT3G07810.1 39.130 92 51 2 3 94 2 88 6.06e-16 76.6
Msa0232050 AT1G76460.1 53.448 58 27 0 3 60 20 77 6.78e-16 75.1
Msa0232050 AT1G22910.1 46.575 73 38 1 1 72 7 79 1.31e-15 73.9
Msa0232050 AT1G22910.2 46.575 73 38 1 1 72 7 79 1.82e-15 73.6
Msa0232050 AT1G60650.4 38.679 106 47 2 39 140 1 92 2.24e-15 73.2
Msa0232050 AT5G55550.5 42.045 88 49 1 8 95 7 92 2.26e-15 74.7
Msa0232050 AT5G55550.4 42.045 88 49 1 8 95 7 92 2.26e-15 74.7
Msa0232050 AT5G55550.9 42.045 88 49 1 8 95 7 92 2.26e-15 74.7
Msa0232050 AT5G55550.7 42.045 88 49 1 8 95 7 92 2.26e-15 74.7
Msa0232050 AT5G55550.1 42.045 88 49 1 8 95 7 92 2.26e-15 74.7
Msa0232050 AT5G55550.2 42.045 88 49 1 8 95 7 92 2.52e-15 74.7
Msa0232050 AT5G55550.3 42.045 88 49 1 8 95 7 92 2.52e-15 74.7
Msa0232050 AT5G55550.6 42.045 88 49 1 8 95 7 92 2.52e-15 74.7
Msa0232050 AT5G55550.11 42.045 88 49 1 8 95 7 92 2.52e-15 74.7
Msa0232050 AT3G20930.1 40.476 84 50 0 8 91 283 366 4.22e-15 73.9
Msa0232050 AT2G37510.1 48.649 74 38 0 8 81 35 108 1.70e-14 68.6
Msa0232050 AT1G22910.3 46.575 73 38 1 1 72 7 79 1.99e-14 71.6
Msa0232050 AT1G73530.1 31.731 104 68 1 8 111 78 178 2.07e-14 69.3
Msa0232050 AT1G20880.2 47.297 74 38 1 3 76 20 92 2.15e-14 70.9
Msa0232050 AT1G20880.3 47.297 74 38 1 3 76 20 92 2.15e-14 70.9
Msa0232050 AT1G20880.1 47.297 74 38 1 3 76 20 92 2.15e-14 70.9
Msa0232050 AT5G47320.1 40.217 92 53 1 8 97 32 123 2.54e-14 69.7
Msa0232050 AT5G47620.1 41.667 84 44 2 8 91 7 85 2.55e-14 71.6
Msa0232050 AT5G47620.2 41.667 84 44 2 8 91 7 85 2.55e-14 71.6
Msa0232050 AT5G47620.5 41.667 84 44 2 8 91 7 85 2.55e-14 71.6
Msa0232050 AT1G60000.1 44.304 79 44 0 6 84 176 254 2.58e-14 70.5
Msa0232050 AT4G14300.1 32.576 132 80 4 3 134 2 124 2.79e-14 71.6
Msa0232050 AT4G14300.1 32.911 79 52 1 8 86 111 188 3.73e-11 62.4
Msa0232050 AT4G14300.2 32.576 132 80 4 3 134 2 124 2.79e-14 71.6
Msa0232050 AT4G14300.2 32.911 79 52 1 8 86 111 188 3.73e-11 62.4
Msa0232050 AT2G27330.1 31.915 94 64 0 9 102 23 116 4.03e-14 67.0
Msa0232050 AT1G22330.1 39.189 74 44 1 3 76 13 85 5.88e-14 70.1
Msa0232050 AT5G50250.1 43.590 78 44 0 7 84 207 284 6.00e-14 69.7
Msa0232050 AT5G50250.1 35.632 87 56 0 5 91 111 197 3.28e-12 65.1
Msa0232050 AT4G13860.1 42.466 73 42 0 8 80 4 76 7.80e-14 65.5
Msa0232050 AT1G78260.1 39.189 74 44 1 3 76 13 85 2.41e-13 68.2
Msa0232050 AT3G54770.3 46.875 64 34 0 3 66 13 76 2.52e-13 67.8
Msa0232050 AT3G54770.1 46.875 64 34 0 3 66 13 76 2.84e-13 67.8
Msa0232050 AT3G20930.2 38.202 89 50 1 8 91 283 371 5.64e-13 67.8
Msa0232050 AT5G55550.8 45.070 71 37 1 8 78 7 75 6.27e-13 67.8
Msa0232050 AT5G55550.10 45.070 71 37 1 8 78 7 75 6.59e-13 67.8
Msa0232050 AT3G08000.1 46.053 76 41 0 8 83 42 117 7.47e-13 64.3
Msa0232050 AT5G47620.4 35.955 89 55 1 3 91 2 88 9.97e-13 67.0
Msa0232050 AT1G17640.2 32.258 93 61 1 8 100 67 157 1.10e-12 67.0
Msa0232050 AT1G17640.1 32.258 93 61 1 8 100 67 157 1.10e-12 67.0
Msa0232050 AT1G17640.3 32.258 93 61 1 8 100 67 157 1.10e-12 67.0
Msa0232050 AT5G53720.1 42.308 78 44 1 6 83 8 84 1.64e-12 62.4
Msa0232050 AT1G78260.2 39.189 74 44 1 3 76 13 85 1.72e-12 65.5
Msa0232050 AT2G21690.1 39.706 68 41 0 1 68 1 68 3.74e-12 61.6
Msa0232050 AT3G52380.1 36.842 76 48 0 8 83 220 295 6.92e-12 64.3
Msa0232050 AT3G52380.1 33.051 118 67 3 8 118 117 229 7.76e-12 64.3
Msa0232050 AT1G03457.3 38.356 73 45 0 9 81 227 299 1.04e-11 63.9
Msa0232050 AT3G13224.1 40.000 75 45 0 8 82 110 184 1.29e-11 62.8
Msa0232050 AT5G19030.1 40.000 80 48 0 10 89 80 159 1.50e-11 61.2
Msa0232050 AT1G03457.2 38.889 72 44 0 10 81 342 413 2.33e-11 63.2
Msa0232050 AT1G03457.1 38.356 73 45 0 9 81 332 404 2.46e-11 63.2
Msa0232050 AT3G47120.2 28.696 115 73 2 9 122 38 144 2.52e-11 62.4
Msa0232050 AT5G40490.1 35.443 79 51 0 8 86 131 209 2.53e-11 63.2
Msa0232050 AT3G47120.1 28.696 115 73 2 9 122 38 144 2.84e-11 62.8
Msa0232050 AT2G33410.1 34.286 70 46 0 3 72 2 71 3.72e-11 62.4
Msa0232050 AT3G06970.1 38.272 81 49 1 3 83 8 87 4.18e-11 62.0
Msa0232050 AT4G13850.2 33.577 137 50 2 8 142 36 133 8.97e-11 58.9

Find 109 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGGCGTTCTCGTGGTTT+TGG 0.181319 2_2:+4368670 Msa0232050:CDS
CGCAATCGTAGCCGAGATTA+TGG 0.231031 2_2:+4368853 Msa0232050:CDS
GGTGGGCGCGACAGGGATTC+TGG 0.257534 2_2:+4369039 Msa0232050:CDS
GGGATGGTGGTGGGCGTGAC+AGG 0.302789 2_2:+4369157 Msa0232050:CDS
GGGATGGCGGTGGGCGTGAC+AGG 0.307692 2_2:+4369136 Msa0232050:CDS
GCTCTTATGGTGGGCGCGAC+AGG 0.315939 2_2:+4369031 Msa0232050:CDS
CCTCCTCTTTCTCCTTCACT+AGG 0.321904 2_2:-4368946 None:intergenic
GTGGTGGTTGACAAATTCTC+TGG 0.342986 2_2:+4368652 Msa0232050:CDS
GGGATGGTGGTGGTCGTGAT+AGG 0.344211 2_2:+4369073 Msa0232050:CDS
GGGATGGCGGTGGTCGTGAT+AGG 0.344211 2_2:+4369094 Msa0232050:CDS
CCGTATGAGCGTCGTGGATC+TGG 0.346433 2_2:+4369198 Msa0232050:CDS
ATCTCTAGATCCTTGTGGTT+GGG 0.361996 2_2:-4368788 None:intergenic
GAGCGATCTGCATTCCTATC+AGG 0.364268 2_2:-4369012 None:intergenic
GATGAGTTTCGTTGCTTCAT+TGG 0.366302 2_2:+4367861 Msa0232050:CDS
ACCTAAGAGTACTGAGTAGA+TGG 0.378475 2_2:-4367119 None:intergenic
GCTTGAGCTTGAGCTTGTTC+CGG 0.385369 2_2:-4367083 None:intergenic
GGGCGTGACAGGGATGGTGG+TGG 0.385485 2_2:+4369147 Msa0232050:CDS
AGGAATGCAGATCGCTCTTA+TGG 0.388029 2_2:+4369018 Msa0232050:CDS
TACATAGACATATTAGTTGC+TGG 0.388090 2_2:+4369572 Msa0232050:three_prime_UTR
TCCATCTACTCAGTACTCTT+AGG 0.393269 2_2:+4367118 Msa0232050:five_prime_UTR
GGAGAAAGAGGAGGAAGGTA+TGG 0.416433 2_2:+4368955 Msa0232050:CDS
TCTCGTATCGTCGGTTACTT+AGG 0.420074 2_2:-4366997 None:intergenic
GGGATTCTGGTGGTCGTGAC+AGG 0.420547 2_2:+4369052 Msa0232050:CDS
ATGCTATCATTATTTACTGC+TGG 0.428403 2_2:+4369543 Msa0232050:three_prime_UTR
GGGATGGCGGTGGACGTGAC+AGG 0.434655 2_2:+4369115 Msa0232050:CDS
GGAGGTAGTCGAGGGTCTAA+TGG 0.442975 2_2:+4368874 Msa0232050:CDS
GGTGGGCGTGACAGGGATGG+TGG 0.446830 2_2:+4369144 Msa0232050:CDS
CTGAAACAGGCGCGCGCGAC+CGG 0.453707 2_2:+4367064 Msa0232050:five_prime_UTR
AGAGAGGCGGAATCTGAAAC+AGG 0.470762 2_2:+4367051 Msa0232050:five_prime_UTR
GTGAGTCACGACCACGTTCT+CGG 0.471685 2_2:-4368825 None:intergenic
TGAATGGTTACATAAGTTGC+TGG 0.476266 2_2:+4369640 Msa0232050:three_prime_UTR
AAAGATGCATTTGAAAAGTA+CGG 0.478989 2_2:+4367918 Msa0232050:CDS
GGCAGAGAAAGTAGATATAG+TGG 0.479639 2_2:+4368979 Msa0232050:CDS
GGACGTGACAGGGATGGCGG+TGG 0.479797 2_2:+4369126 Msa0232050:CDS
CATCTCTAGATCCTTGTGGT+TGG 0.481683 2_2:-4368789 None:intergenic
CTCCTCTTTCTCCTTCACTA+GGG 0.489943 2_2:-4368945 None:intergenic
GGCGTGACAGGGATGGTGGT+GGG 0.492470 2_2:+4369148 Msa0232050:CDS
CTCTTATGGTGGGCGCGACA+GGG 0.500774 2_2:+4369032 Msa0232050:CDS
GAGTTTCGTTGCTTCATTGG+TGG 0.502387 2_2:+4367864 Msa0232050:CDS
TGCCCTAGTGAAGGAGAAAG+AGG 0.503529 2_2:+4368943 Msa0232050:CDS
GAAAGAGGAGGAAGGTATGG+TGG 0.504556 2_2:+4368958 Msa0232050:CDS
ATTAGTGACTTGTGCATGAA+TGG 0.505500 2_2:+4369624 Msa0232050:three_prime_UTR
CACTCCCTTGCAAAATGACC+GGG 0.506117 2_2:-4368922 None:intergenic
TGCTTTAAGTGTGGTAAACC+CGG 0.508262 2_2:+4368904 Msa0232050:CDS
GGATGGCGGTGGTCGTGATA+GGG 0.515261 2_2:+4369095 Msa0232050:CDS
AGTAGATATAGTGGTGGCTA+TGG 0.515924 2_2:+4368988 Msa0232050:CDS
GCACTCCCTTGCAAAATGAC+CGG 0.518487 2_2:-4368923 None:intergenic
GGCTATGAATGGAATTGACT+TGG 0.522243 2_2:+4368738 Msa0232050:CDS
AAATTCTCTGGGCGTTCTCG+TGG 0.522551 2_2:+4368664 Msa0232050:CDS
GGATGGTGGTGGTCGTGATA+GGG 0.522834 2_2:+4369074 Msa0232050:CDS
GGTCGTGACAGGGATGGTGG+TGG 0.527932 2_2:+4369063 Msa0232050:CDS
GCTTCATTGGTGGCCTTGCA+TGG 0.529203 2_2:+4367874 Msa0232050:CDS
GAGGCTATTGAGGCTATGAA+TGG 0.532703 2_2:+4368727 Msa0232050:CDS
GGCGGTGGGCGTGACAGGGA+TGG 0.543513 2_2:+4369141 Msa0232050:CDS
TTGTGTGTAGTTTCAAATGT+CGG 0.544631 2_2:+4367833 Msa0232050:intron
CGGCAAGCTTGTTGAGGCAA+AGG 0.545418 2_2:+4367938 Msa0232050:CDS
GGATGGTGGTGGGCGTGACA+GGG 0.545644 2_2:+4369158 Msa0232050:CDS
CTCGACTACCTCCATAATCT+CGG 0.546127 2_2:-4368864 None:intergenic
AGCAATGGAAGAGGCTATTG+AGG 0.547802 2_2:+4368717 Msa0232050:CDS
ATTTGATGACAAGGAAGCAA+TGG 0.550117 2_2:+4368702 Msa0232050:CDS
GGATGGCGGTGGGCGTGACA+GGG 0.550547 2_2:+4369137 Msa0232050:CDS
TATCAGAAGTTGACCATGCA+AGG 0.550661 2_2:-4367887 None:intergenic
GTAGTTTCAAATGTCGGATA+CGG 0.558465 2_2:+4367839 Msa0232050:intron
CCAGATCCACGACGCTCATA+CGG 0.559082 2_2:-4369198 None:intergenic
GTTGCTGGATTTACAGCAGT+GGG 0.561015 2_2:+4369587 Msa0232050:three_prime_UTR
ATTTCAATAGAGCTAACGAT+TGG 0.562109 2_2:-4369477 None:intergenic
GTGGTGGCTATGGTCCTGAT+AGG 0.564092 2_2:+4368998 Msa0232050:CDS
GGATGGCGGTGGACGTGACA+GGG 0.565962 2_2:+4369116 Msa0232050:CDS
GACAGGGATCGCGATCGTGC+GGG 0.566766 2_2:+4369174 Msa0232050:CDS
GGCGGTGGACGTGACAGGGA+TGG 0.569612 2_2:+4369120 Msa0232050:CDS
TGACAGGGATCGCGATCGTG+CGG 0.569790 2_2:+4369173 Msa0232050:CDS
GCAAGGGAGTGCCCTAGTGA+AGG 0.574118 2_2:+4368934 Msa0232050:CDS
TGATACCTCTAGCTTCATTG+AGG 0.576981 2_2:+4369231 Msa0232050:exon
GACGTGACAGGGATGGCGGT+GGG 0.581614 2_2:+4369127 Msa0232050:CDS
CGAGATTATGGAGGTAGTCG+AGG 0.583349 2_2:+4368865 Msa0232050:CDS
AATGCAGATCGCTCTTATGG+TGG 0.584861 2_2:+4369021 Msa0232050:CDS
GGTGGTCGTGACAGGGATGG+TGG 0.589081 2_2:+4369060 Msa0232050:CDS
TGGTGGTTGACAAATTCTCT+GGG 0.595910 2_2:+4368653 Msa0232050:CDS
GGATTCTGGTGGTCGTGACA+GGG 0.596366 2_2:+4369053 Msa0232050:CDS
TGACAAGGAAGCAATGGAAG+AGG 0.600324 2_2:+4368708 Msa0232050:CDS
GGTCGTGATAGGGATGGCGG+TGG 0.600939 2_2:+4369105 Msa0232050:CDS
ATGCAGATCGCTCTTATGGT+GGG 0.607336 2_2:+4369022 Msa0232050:CDS
GATGATCGTCACCGAGAACG+TGG 0.610333 2_2:+4368814 Msa0232050:CDS
TCTGGTGGTCGTGACAGGGA+TGG 0.611424 2_2:+4369057 Msa0232050:CDS
GTTTGTCACATTTGATGACA+AGG 0.613183 2_2:+4368693 Msa0232050:CDS
GGTGGACGTGACAGGGATGG+CGG 0.615987 2_2:+4369123 Msa0232050:CDS
GGCGGTGGTCGTGATAGGGA+TGG 0.616824 2_2:+4369099 Msa0232050:CDS
AGTTGCTGGATTTACAGCAG+TGG 0.618491 2_2:+4369586 Msa0232050:three_prime_UTR
GTGAAGGAGAAAGAGGAGGA+AGG 0.620131 2_2:+4368950 Msa0232050:CDS
ATGAATGGAATTGACTTGGA+TGG 0.625730 2_2:+4368742 Msa0232050:CDS
GGTGGTGGTCGTGATAGGGA+TGG 0.627036 2_2:+4369078 Msa0232050:CDS
AAGTACCTCAATGAAGCTAG+AGG 0.637962 2_2:-4369236 None:intergenic
GAGATTATGGAGGTAGTCGA+GGG 0.639832 2_2:+4368866 Msa0232050:CDS
TCATCATCTCTAGATCCTTG+TGG 0.641739 2_2:-4368793 None:intergenic
GGTCGTGATAGGGATGGCGG+TGG 0.641846 2_2:+4369084 Msa0232050:CDS
GGTGGTCGTGATAGGGATGG+CGG 0.656307 2_2:+4369081 Msa0232050:CDS
GGGCGCGACAGGGATTCTGG+TGG 0.659692 2_2:+4369042 Msa0232050:CDS
TATGAGCGTCGTGGATCTGG+AGG 0.659825 2_2:+4369201 Msa0232050:CDS
ATGGAATTGACTTGGATGGA+CGG 0.661188 2_2:+4368746 Msa0232050:CDS
AAAGTACGGCAAGCTTGTTG+AGG 0.663446 2_2:+4367932 Msa0232050:CDS
CCTAGTGAAGGAGAAAGAGG+AGG 0.670336 2_2:+4368946 Msa0232050:CDS
GCGGGACCGTATGAGCGTCG+TGG 0.672558 2_2:+4369192 Msa0232050:CDS
GTTGATAAAGCCCAACCACA+AGG 0.676735 2_2:+4368778 Msa0232050:CDS
AGAGAAAGTAGATATAGTGG+TGG 0.687288 2_2:+4368982 Msa0232050:CDS
AATCGTAGCCGAGATTATGG+AGG 0.691072 2_2:+4368856 Msa0232050:CDS
GGTAGTCGAGGGTCTAATGG+CGG 0.694342 2_2:+4368877 Msa0232050:CDS
GAAGCTAGAGGTATCAACGA+TGG 0.695562 2_2:-4369224 None:intergenic
GGTGGTCGTGATAGGGATGG+CGG 0.702840 2_2:+4369102 Msa0232050:CDS
GGCGGTGAATGCTTTAAGTG+TGG 0.713199 2_2:+4368895 Msa0232050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAATAAAATTGAAT+CGG - chr2_2:4367203-4367222 None:intergenic 10.0%
!!! TAGAAAACCAATTTTATTAT+GGG - chr2_2:4368442-4368461 None:intergenic 15.0%
!!! TAGTCATTTTTTTGGAATTT+AGG + chr2_2:4367323-4367342 Msa0232050:intron 20.0%
!!! AGTCATTTTTTTGGAATTTA+GGG + chr2_2:4367324-4367343 Msa0232050:intron 20.0%
!!! ATGTTGTTTATGTATATATG+TGG + chr2_2:4367433-4367452 Msa0232050:intron 20.0%
!!! TGTTGTTTATGTATATATGT+GGG + chr2_2:4367434-4367453 Msa0232050:intron 20.0%
!! ATTCATGTACTAGAAATTAT+GGG + chr2_2:4367495-4367514 Msa0232050:intron 20.0%
!! TATTACAATTCTCAACATTA+GGG - chr2_2:4367546-4367565 None:intergenic 20.0%
!! TTATTACAATTCTCAACATT+AGG - chr2_2:4367547-4367566 None:intergenic 20.0%
!! AATGTTGAGAATTGTAATAA+AGG + chr2_2:4367547-4367566 Msa0232050:intron 20.0%
!! ACATTTAAATTGTGTATTTG+AGG + chr2_2:4367692-4367711 Msa0232050:intron 20.0%
!! AATATTTAAATCAGCTATAG+GGG - chr2_2:4367787-4367806 None:intergenic 20.0%
!! GAATATTTAAATCAGCTATA+GGG - chr2_2:4367788-4367807 None:intergenic 20.0%
!! TGAATATTTAAATCAGCTAT+AGG - chr2_2:4367789-4367808 None:intergenic 20.0%
!!! ATAGCTGATTTAAATATTCA+AGG + chr2_2:4367789-4367808 Msa0232050:intron 20.0%
!!! CTTTTATTCATTGATAACAT+TGG + chr2_2:4368094-4368113 Msa0232050:intron 20.0%
!!! GTAGAAAACCAATTTTATTA+TGG - chr2_2:4368443-4368462 None:intergenic 20.0%
!!! TACTGAATTTATTTTGTAAG+TGG + chr2_2:4368460-4368479 Msa0232050:intron 20.0%
!! TAATCATTCATTGACATTTA+AGG + chr2_2:4368609-4368628 Msa0232050:intron 20.0%
!!! ATATTTTGATTTGCAATACT+TGG + chr2_2:4369422-4369441 Msa0232050:three_prime_UTR 20.0%
! GAATGAATGAATGAATATGT+TGG - chr2_2:4367154-4367173 None:intergenic 25.0%
!!! GTTTTGTTTTGATTAGTGTA+TGG + chr2_2:4367228-4367247 Msa0232050:intron 25.0%
!!! TTTTTTGGAATTTAGGGTTT+TGG + chr2_2:4367330-4367349 Msa0232050:intron 25.0%
!!! TTTTTGGAATTTAGGGTTTT+GGG + chr2_2:4367331-4367350 Msa0232050:intron 25.0%
!! CATTTGAGGTTAATTTGATT+GGG + chr2_2:4367403-4367422 Msa0232050:intron 25.0%
! TTTATGTATATATGTGGGAT+GGG + chr2_2:4367439-4367458 Msa0232050:intron 25.0%
! ATGAATCAAAACAAAAACCA+CGG - chr2_2:4367481-4367500 None:intergenic 25.0%
! GATTCATGTACTAGAAATTA+TGG + chr2_2:4367494-4367513 Msa0232050:intron 25.0%
! TTCATGTACTAGAAATTATG+GGG + chr2_2:4367496-4367515 Msa0232050:intron 25.0%
! TGTAATAAAGGTGATGTATT+TGG + chr2_2:4367559-4367578 Msa0232050:intron 25.0%
! GTAATAAAGGTGATGTATTT+GGG + chr2_2:4367560-4367579 Msa0232050:intron 25.0%
!!! TATGATCATTTTAGGGATTT+AGG + chr2_2:4367586-4367605 Msa0232050:intron 25.0%
!!! ATGATCATTTTAGGGATTTA+GGG + chr2_2:4367587-4367606 Msa0232050:intron 25.0%
!! TATTTGAGGTGAATTTGATT+GGG + chr2_2:4367706-4367725 Msa0232050:intron 25.0%
! TTTGATTGGGTTTATTATTG+TGG + chr2_2:4367719-4367738 Msa0232050:intron 25.0%
!! TCTTGTTTATATATGTGTGA+TGG + chr2_2:4367752-4367771 Msa0232050:intron 25.0%
! CTTGTTTATATATGTGTGAT+GGG + chr2_2:4367753-4367772 Msa0232050:intron 25.0%
! AAAGATGCATTTGAAAAGTA+CGG + chr2_2:4367918-4367937 Msa0232050:CDS 25.0%
! AAAAGAAAAATCACAGAAGT+TGG - chr2_2:4368079-4368098 None:intergenic 25.0%
! TGATAACATTGGATGAAAAA+TGG + chr2_2:4368105-4368124 Msa0232050:intron 25.0%
! AAAATTAGCATACCAAACAT+AGG + chr2_2:4368153-4368172 Msa0232050:intron 25.0%
! TCAAATTAGTCAATTCAAAC+AGG + chr2_2:4368416-4368435 Msa0232050:intron 25.0%
!!! TGATTTTTGCAGTTTTGAAT+TGG + chr2_2:4369320-4369339 Msa0232050:intron 25.0%
!!! GTGTTCTTGGATTTTTTTTA+TGG + chr2_2:4369381-4369400 Msa0232050:three_prime_UTR 25.0%
TGATTAGTGTATGGAAATCA+TGG + chr2_2:4367237-4367256 Msa0232050:intron 30.0%
GATTAGTGTATGGAAATCAT+GGG + chr2_2:4367238-4367257 Msa0232050:intron 30.0%
!! TCATGGGTTTACTTTGATTT+TGG + chr2_2:4367254-4367273 Msa0232050:intron 30.0%
TGTAATAAAGCTACTACCTT+TGG + chr2_2:4367293-4367312 Msa0232050:intron 30.0%
GTAATAAAGCTACTACCTTT+GGG + chr2_2:4367294-4367313 Msa0232050:intron 30.0%
TAATAAAGCTACTACCTTTG+GGG + chr2_2:4367295-4367314 Msa0232050:intron 30.0%
!!! GGGTTCTTTAGTCATTTTTT+TGG + chr2_2:4367315-4367334 Msa0232050:intron 30.0%
!! TATCCTTTTAGTTGTACACT+TGG + chr2_2:4367365-4367384 Msa0232050:intron 30.0%
TCTACTTAATTGTGCATTTG+AGG + chr2_2:4367389-4367408 Msa0232050:intron 30.0%
! GCATTTGAGGTTAATTTGAT+TGG + chr2_2:4367402-4367421 Msa0232050:intron 30.0%
GTTTATGTATATATGTGGGA+TGG + chr2_2:4367438-4367457 Msa0232050:intron 30.0%
! TTGGGTTCTATGATCATTTT+AGG + chr2_2:4367578-4367597 Msa0232050:intron 30.0%
! TGGGTTCTATGATCATTTTA+GGG + chr2_2:4367579-4367598 Msa0232050:intron 30.0%
! GTATTTGAGGTGAATTTGAT+TGG + chr2_2:4367705-4367724 Msa0232050:intron 30.0%
! TATATATGTGTGATGGGATT+TGG + chr2_2:4367759-4367778 Msa0232050:intron 30.0%
TTGAAACTACACACAATTGA+AGG - chr2_2:4367829-4367848 None:intergenic 30.0%
TTGTGTGTAGTTTCAAATGT+CGG + chr2_2:4367833-4367852 Msa0232050:intron 30.0%
AGCATGAAATTGTAACAAGA+TGG - chr2_2:4368011-4368030 None:intergenic 30.0%
ACTTATAGCATCTATGAAAC+AGG - chr2_2:4368297-4368316 None:intergenic 30.0%
AAACAGGCCCATAATAAAAT+TGG + chr2_2:4368432-4368451 Msa0232050:intron 30.0%
AATTATACATGGAAGGTCAA+TGG - chr2_2:4368494-4368513 None:intergenic 30.0%
AGCATACAATTATACATGGA+AGG - chr2_2:4368501-4368520 None:intergenic 30.0%
TCCATGTATAATTGTATGCT+TGG + chr2_2:4368501-4368520 Msa0232050:intron 30.0%
CCATGTATAATTGTATGCTT+GGG + chr2_2:4368502-4368521 Msa0232050:intron 30.0%
GTTATTTGTATGAGAGTGAA+AGG - chr2_2:4368535-4368554 None:intergenic 30.0%
TTAGCAAGAAAATGTGTGAT+GGG - chr2_2:4368589-4368608 None:intergenic 30.0%
ATTAGCAAGAAAATGTGTGA+TGG - chr2_2:4368590-4368609 None:intergenic 30.0%
!!! GCTAAATATTTTGAGTTAGG+TGG + chr2_2:4368633-4368652 Msa0232050:intron 30.0%
!!! AAATATTTTGAGTTAGGTGG+TGG + chr2_2:4368636-4368655 Msa0232050:intron 30.0%
! CTTTTTGCACATGTTTTTCA+TGG + chr2_2:4369277-4369296 Msa0232050:intron 30.0%
!!! TTTTTGCAGTTTTGAATTGG+AGG + chr2_2:4369323-4369342 Msa0232050:intron 30.0%
!!! TTTTGCAGTTTTGAATTGGA+GGG + chr2_2:4369324-4369343 Msa0232050:intron 30.0%
ATTTCAATAGAGCTAACGAT+TGG - chr2_2:4369480-4369499 None:intergenic 30.0%
ATGCTATCATTATTTACTGC+TGG + chr2_2:4369543-4369562 Msa0232050:three_prime_UTR 30.0%
TACATAGACATATTAGTTGC+TGG + chr2_2:4369572-4369591 Msa0232050:three_prime_UTR 30.0%
AAATGACTAAAGAACCCCAA+AGG - chr2_2:4367312-4367331 None:intergenic 35.0%
GAACCAAGTGTACAACTAAA+AGG - chr2_2:4367371-4367390 None:intergenic 35.0%
ACTAGAAATTATGGGGTTCT+TGG + chr2_2:4367503-4367522 Msa0232050:intron 35.0%
CTAGAAATTATGGGGTTCTT+GGG + chr2_2:4367504-4367523 Msa0232050:intron 35.0%
GTAGTTTCAAATGTCGGATA+CGG + chr2_2:4367839-4367858 Msa0232050:intron 35.0%
GAAGTTGGCAAAAGTAAAGA+AGG - chr2_2:4368064-4368083 None:intergenic 35.0%
GCATACCAAACATAGGATAT+TGG + chr2_2:4368160-4368179 Msa0232050:intron 35.0%
CATCACCAATATCCTATGTT+TGG - chr2_2:4368168-4368187 None:intergenic 35.0%
CTACACTATCTATCCAAACA+TGG - chr2_2:4368191-4368210 None:intergenic 35.0%
CCCAAGCATACAATTATACA+TGG - chr2_2:4368505-4368524 None:intergenic 35.0%
AGGGGATGTATATAGTGAAA+GGG - chr2_2:4368557-4368576 None:intergenic 35.0%
! AGAAAATGTGTGATGGGAAT+GGG - chr2_2:4368583-4368602 None:intergenic 35.0%
! AAGAAAATGTGTGATGGGAA+TGG - chr2_2:4368584-4368603 None:intergenic 35.0%
!!! GGCGCTAAATATTTTGAGTT+AGG + chr2_2:4368630-4368649 Msa0232050:intron 35.0%
! GTTTGTCACATTTGATGACA+AGG + chr2_2:4368693-4368712 Msa0232050:CDS 35.0%
! ATTTGATGACAAGGAAGCAA+TGG + chr2_2:4368702-4368721 Msa0232050:CDS 35.0%
!! ATGAATGGAATTGACTTGGA+TGG + chr2_2:4368742-4368761 Msa0232050:CDS 35.0%
AGAGAAAGTAGATATAGTGG+TGG + chr2_2:4368982-4369001 Msa0232050:CDS 35.0%
!! TCTTTTGATGACAGTGTTCT+TGG + chr2_2:4369368-4369387 Msa0232050:three_prime_UTR 35.0%
! ATTAGTGACTTGTGCATGAA+TGG + chr2_2:4369624-4369643 Msa0232050:three_prime_UTR 35.0%
TGAATGGTTACATAAGTTGC+TGG + chr2_2:4369640-4369659 Msa0232050:three_prime_UTR 35.0%
TCCATCTACTCAGTACTCTT+AGG + chr2_2:4367118-4367137 Msa0232050:five_prime_UTR 40.0%
!! ACCTAAGAGTACTGAGTAGA+TGG - chr2_2:4367122-4367141 None:intergenic 40.0%
GATTTGAATCTCTATAGCCG+TGG + chr2_2:4367461-4367480 Msa0232050:intron 40.0%
GATGAGTTTCGTTGCTTCAT+TGG + chr2_2:4367861-4367880 Msa0232050:CDS 40.0%
TATCAGAAGTTGACCATGCA+AGG - chr2_2:4367890-4367909 None:intergenic 40.0%
!! GATATTGGTGATGCCATGTT+TGG + chr2_2:4368175-4368194 Msa0232050:intron 40.0%
CAGGGGATGTATATAGTGAA+AGG - chr2_2:4368558-4368577 None:intergenic 40.0%
TGGTGGTTGACAAATTCTCT+GGG + chr2_2:4368653-4368672 Msa0232050:CDS 40.0%
GGCTATGAATGGAATTGACT+TGG + chr2_2:4368738-4368757 Msa0232050:CDS 40.0%
!! ATGGAATTGACTTGGATGGA+CGG + chr2_2:4368746-4368765 Msa0232050:CDS 40.0%
ATCTCTAGATCCTTGTGGTT+GGG - chr2_2:4368791-4368810 None:intergenic 40.0%
TCATCATCTCTAGATCCTTG+TGG - chr2_2:4368796-4368815 None:intergenic 40.0%
! TGCTTTAAGTGTGGTAAACC+CGG + chr2_2:4368904-4368923 Msa0232050:CDS 40.0%
!! TAAACCCGGTCATTTTGCAA+GGG + chr2_2:4368918-4368937 Msa0232050:CDS 40.0%
GGCAGAGAAAGTAGATATAG+TGG + chr2_2:4368979-4368998 Msa0232050:CDS 40.0%
AGTAGATATAGTGGTGGCTA+TGG + chr2_2:4368988-4369007 Msa0232050:CDS 40.0%
! TGATACCTCTAGCTTCATTG+AGG + chr2_2:4369231-4369250 Msa0232050:exon 40.0%
AAGTACCTCAATGAAGCTAG+AGG - chr2_2:4369239-4369258 None:intergenic 40.0%
! TCTCGTATCGTCGGTTACTT+AGG - chr2_2:4367000-4367019 None:intergenic 45.0%
! GGGATTTAGGGTATCAGTTG+TGG + chr2_2:4367599-4367618 Msa0232050:intron 45.0%
GAGTTTCGTTGCTTCATTGG+TGG + chr2_2:4367864-4367883 Msa0232050:CDS 45.0%
!! AAAGTACGGCAAGCTTGTTG+AGG + chr2_2:4367932-4367951 Msa0232050:CDS 45.0%
GTGGTGGTTGACAAATTCTC+TGG + chr2_2:4368652-4368671 Msa0232050:CDS 45.0%
TGACAAGGAAGCAATGGAAG+AGG + chr2_2:4368708-4368727 Msa0232050:CDS 45.0%
AGCAATGGAAGAGGCTATTG+AGG + chr2_2:4368717-4368736 Msa0232050:CDS 45.0%
GAGGCTATTGAGGCTATGAA+TGG + chr2_2:4368727-4368746 Msa0232050:CDS 45.0%
! GTTGATAAAGCCCAACCACA+AGG + chr2_2:4368778-4368797 Msa0232050:CDS 45.0%
CATCTCTAGATCCTTGTGGT+TGG - chr2_2:4368792-4368811 None:intergenic 45.0%
AATCGTAGCCGAGATTATGG+AGG + chr2_2:4368856-4368875 Msa0232050:CDS 45.0%
CTCGACTACCTCCATAATCT+CGG - chr2_2:4368867-4368886 None:intergenic 45.0%
GAGATTATGGAGGTAGTCGA+GGG + chr2_2:4368866-4368885 Msa0232050:CDS 45.0%
!! GTAAACCCGGTCATTTTGCA+AGG + chr2_2:4368917-4368936 Msa0232050:CDS 45.0%
CTCCTCTTTCTCCTTCACTA+GGG - chr2_2:4368948-4368967 None:intergenic 45.0%
AGGAATGCAGATCGCTCTTA+TGG + chr2_2:4369018-4369037 Msa0232050:CDS 45.0%
AATGCAGATCGCTCTTATGG+TGG + chr2_2:4369021-4369040 Msa0232050:CDS 45.0%
ATGCAGATCGCTCTTATGGT+GGG + chr2_2:4369022-4369041 Msa0232050:CDS 45.0%
!! GAAGCTAGAGGTATCAACGA+TGG - chr2_2:4369227-4369246 None:intergenic 45.0%
AGTTGCTGGATTTACAGCAG+TGG + chr2_2:4369586-4369605 Msa0232050:three_prime_UTR 45.0%
GTTGCTGGATTTACAGCAGT+GGG + chr2_2:4369587-4369606 Msa0232050:three_prime_UTR 45.0%
CTCTCTCTCTCTCGTATCGT+CGG - chr2_2:4367009-4367028 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr2_2:4367017-4367036 Msa0232050:five_prime_UTR 50.0%
! AGAGAGGCGGAATCTGAAAC+AGG + chr2_2:4367051-4367070 Msa0232050:five_prime_UTR 50.0%
! GCTTGAGCTTGAGCTTGTTC+CGG - chr2_2:4367086-4367105 None:intergenic 50.0%
AAGCCATCCTAGAGAGCTTC+TGG + chr2_2:4368326-4368345 Msa0232050:intron 50.0%
! TGTCCAGAAGCTCTCTAGGA+TGG - chr2_2:4368332-4368351 None:intergenic 50.0%
GTCATGTCCAGAAGCTCTCT+AGG - chr2_2:4368336-4368355 None:intergenic 50.0%
! TGTGATGGGAATGGGATCAG+GGG - chr2_2:4368575-4368594 None:intergenic 50.0%
! GTGTGATGGGAATGGGATCA+GGG - chr2_2:4368576-4368595 None:intergenic 50.0%
! TGTGTGATGGGAATGGGATC+AGG - chr2_2:4368577-4368596 None:intergenic 50.0%
AAATTCTCTGGGCGTTCTCG+TGG + chr2_2:4368664-4368683 Msa0232050:CDS 50.0%
CGCAATCGTAGCCGAGATTA+TGG + chr2_2:4368853-4368872 Msa0232050:CDS 50.0%
CGAGATTATGGAGGTAGTCG+AGG + chr2_2:4368865-4368884 Msa0232050:CDS 50.0%
! GGCGGTGAATGCTTTAAGTG+TGG + chr2_2:4368895-4368914 Msa0232050:CDS 50.0%
CACTCCCTTGCAAAATGACC+GGG - chr2_2:4368925-4368944 None:intergenic 50.0%
GCACTCCCTTGCAAAATGAC+CGG - chr2_2:4368926-4368945 None:intergenic 50.0%
TGCCCTAGTGAAGGAGAAAG+AGG + chr2_2:4368943-4368962 Msa0232050:CDS 50.0%
CCTCCTCTTTCTCCTTCACT+AGG - chr2_2:4368949-4368968 None:intergenic 50.0%
CCTAGTGAAGGAGAAAGAGG+AGG + chr2_2:4368946-4368965 Msa0232050:CDS 50.0%
GTGAAGGAGAAAGAGGAGGA+AGG + chr2_2:4368950-4368969 Msa0232050:CDS 50.0%
GGAGAAAGAGGAGGAAGGTA+TGG + chr2_2:4368955-4368974 Msa0232050:CDS 50.0%
! GAAAGAGGAGGAAGGTATGG+TGG + chr2_2:4368958-4368977 Msa0232050:CDS 50.0%
GAGCGATCTGCATTCCTATC+AGG - chr2_2:4369015-4369034 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGG+CGG + chr2_2:4367038-4367057 Msa0232050:five_prime_UTR 55.0%
! GCTTCATTGGTGGCCTTGCA+TGG + chr2_2:4367874-4367893 Msa0232050:CDS 55.0%
!! CGGCAAGCTTGTTGAGGCAA+AGG + chr2_2:4367938-4367957 Msa0232050:CDS 55.0%
! TCTGGGCGTTCTCGTGGTTT+TGG + chr2_2:4368670-4368689 Msa0232050:CDS 55.0%
! CTGGGCGTTCTCGTGGTTTT+GGG + chr2_2:4368671-4368690 Msa0232050:CDS 55.0%
GATGATCGTCACCGAGAACG+TGG + chr2_2:4368814-4368833 Msa0232050:CDS 55.0%
GTGAGTCACGACCACGTTCT+CGG - chr2_2:4368828-4368847 None:intergenic 55.0%
GGAGGTAGTCGAGGGTCTAA+TGG + chr2_2:4368874-4368893 Msa0232050:CDS 55.0%
GGTAGTCGAGGGTCTAATGG+CGG + chr2_2:4368877-4368896 Msa0232050:CDS 55.0%
GTGGTGGCTATGGTCCTGAT+AGG + chr2_2:4368998-4369017 Msa0232050:CDS 55.0%
GGATTCTGGTGGTCGTGACA+GGG + chr2_2:4369053-4369072 Msa0232050:CDS 55.0%
!! GGATGGTGGTGGTCGTGATA+GGG + chr2_2:4369074-4369093 Msa0232050:CDS 55.0%
CCAGATCCACGACGCTCATA+CGG - chr2_2:4369201-4369220 None:intergenic 55.0%
! TATGAGCGTCGTGGATCTGG+AGG + chr2_2:4369201-4369220 Msa0232050:CDS 55.0%
!! GCAAGGGAGTGCCCTAGTGA+AGG + chr2_2:4368934-4368953 Msa0232050:CDS 60.0%
!! CTCTTATGGTGGGCGCGACA+GGG + chr2_2:4369032-4369051 Msa0232050:CDS 60.0%
GGGATTCTGGTGGTCGTGAC+AGG + chr2_2:4369052-4369071 Msa0232050:CDS 60.0%
TCTGGTGGTCGTGACAGGGA+TGG + chr2_2:4369057-4369076 Msa0232050:CDS 60.0%
!! GGGATGGTGGTGGTCGTGAT+AGG + chr2_2:4369073-4369092 Msa0232050:CDS 60.0%
! GGTGGTGGTCGTGATAGGGA+TGG + chr2_2:4369078-4369097 Msa0232050:CDS 60.0%
GGTGGTCGTGATAGGGATGG+CGG + chr2_2:4369081-4369100 Msa0232050:CDS 60.0%
! GGATGGCGGTGGTCGTGATA+GGG + chr2_2:4369095-4369114 Msa0232050:CDS 60.0%
GGTGGTCGTGATAGGGATGG+CGG + chr2_2:4369081-4369100 Msa0232050:CDS 60.0%
TGACAGGGATCGCGATCGTG+CGG + chr2_2:4369173-4369192 Msa0232050:CDS 60.0%
! CCGTATGAGCGTCGTGGATC+TGG + chr2_2:4369198-4369217 Msa0232050:CDS 60.0%
!! GCTCTTATGGTGGGCGCGAC+AGG + chr2_2:4369031-4369050 Msa0232050:CDS 65.0%
GGTGGTCGTGACAGGGATGG+TGG + chr2_2:4369060-4369079 Msa0232050:CDS 65.0%
! GGTCGTGACAGGGATGGTGG+TGG + chr2_2:4369063-4369082 Msa0232050:CDS 65.0%
! GGTCGTGATAGGGATGGCGG+TGG + chr2_2:4369084-4369103 Msa0232050:CDS 65.0%
! GGGATGGCGGTGGTCGTGAT+AGG + chr2_2:4369094-4369113 Msa0232050:CDS 65.0%
GGCGGTGGTCGTGATAGGGA+TGG + chr2_2:4369099-4369118 Msa0232050:CDS 65.0%
! GGTCGTGATAGGGATGGCGG+TGG + chr2_2:4369084-4369103 Msa0232050:CDS 65.0%
! GGATGGCGGTGGACGTGACA+GGG + chr2_2:4369116-4369135 Msa0232050:CDS 65.0%
GGTGGACGTGACAGGGATGG+CGG + chr2_2:4369123-4369142 Msa0232050:CDS 65.0%
! GACGTGACAGGGATGGCGGT+GGG + chr2_2:4369127-4369146 Msa0232050:CDS 65.0%
! GGCGTGACAGGGATGGTGGT+GGG + chr2_2:4369148-4369167 Msa0232050:CDS 65.0%
!! GGATGGTGGTGGGCGTGACA+GGG + chr2_2:4369158-4369177 Msa0232050:CDS 65.0%
GACAGGGATCGCGATCGTGC+GGG + chr2_2:4369174-4369193 Msa0232050:CDS 65.0%
CTGAAACAGGCGCGCGCGAC+CGG + chr2_2:4367064-4367083 Msa0232050:five_prime_UTR 70.0%
GGTGGGCGCGACAGGGATTC+TGG + chr2_2:4369039-4369058 Msa0232050:CDS 70.0%
GGGCGCGACAGGGATTCTGG+TGG + chr2_2:4369042-4369061 Msa0232050:CDS 70.0%
! GGGATGGCGGTGGACGTGAC+AGG + chr2_2:4369115-4369134 Msa0232050:CDS 70.0%
GGCGGTGGACGTGACAGGGA+TGG + chr2_2:4369120-4369139 Msa0232050:CDS 70.0%
! GGACGTGACAGGGATGGCGG+TGG + chr2_2:4369126-4369145 Msa0232050:CDS 70.0%
! GGATGGCGGTGGGCGTGACA+GGG + chr2_2:4369137-4369156 Msa0232050:CDS 70.0%
GGTGGGCGTGACAGGGATGG+TGG + chr2_2:4369144-4369163 Msa0232050:CDS 70.0%
! GGGCGTGACAGGGATGGTGG+TGG + chr2_2:4369147-4369166 Msa0232050:CDS 70.0%
!! GGGATGGTGGTGGGCGTGAC+AGG + chr2_2:4369157-4369176 Msa0232050:CDS 70.0%
! GCGGGACCGTATGAGCGTCG+TGG + chr2_2:4369192-4369211 Msa0232050:CDS 70.0%
! GGGATGGCGGTGGGCGTGAC+AGG + chr2_2:4369136-4369155 Msa0232050:CDS 75.0%
GGCGGTGGGCGTGACAGGGA+TGG + chr2_2:4369141-4369160 Msa0232050:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 4366972 4369676 4366972 ID=Msa0232050;Name=Msa0232050
chr2_2 mRNA 4366972 4369676 4366972 ID=Msa0232050-mRNA-1;Parent=Msa0232050;Name=Msa0232050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=174|1|1|1|0.33|0.25|4|364|230
chr2_2 exon 4366972 4367139 4366972 ID=Msa0232050-mRNA-1:exon:1754;Parent=Msa0232050-mRNA-1
chr2_2 exon 4367843 4367959 4367843 ID=Msa0232050-mRNA-1:exon:1755;Parent=Msa0232050-mRNA-1
chr2_2 exon 4368652 4369252 4368652 ID=Msa0232050-mRNA-1:exon:1756;Parent=Msa0232050-mRNA-1
chr2_2 exon 4369332 4369676 4369332 ID=Msa0232050-mRNA-1:exon:1757;Parent=Msa0232050-mRNA-1
chr2_2 five_prime_UTR 4366972 4367139 4366972 ID=Msa0232050-mRNA-1:five_prime_utr;Parent=Msa0232050-mRNA-1
chr2_2 five_prime_UTR 4367843 4367848 4367843 ID=Msa0232050-mRNA-1:five_prime_utr;Parent=Msa0232050-mRNA-1
chr2_2 CDS 4367849 4367959 4367849 ID=Msa0232050-mRNA-1:cds;Parent=Msa0232050-mRNA-1
chr2_2 CDS 4368652 4369233 4368652 ID=Msa0232050-mRNA-1:cds;Parent=Msa0232050-mRNA-1
chr2_2 three_prime_UTR 4369234 4369252 4369234 ID=Msa0232050-mRNA-1:three_prime_utr;Parent=Msa0232050-mRNA-1
chr2_2 three_prime_UTR 4369332 4369676 4369332 ID=Msa0232050-mRNA-1:three_prime_utr;Parent=Msa0232050-mRNA-1
Gene Sequence

>Msa0232050

ATGTCGGATACGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACTTCTGATAGAAGATTAAAAGATGCATTTGAAAAGTACGGCAAGCTTGTTGAGGCAAAGGTGGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATTGACTTGGATGGACGGACTATTACTGTTGATAAAGCCCAACCACAAGGATCTAGAGATGATGATGATCGTCACCGAGAACGTGGTCGTGACTCACGTGATCGCAATCGTAGCCGAGATTATGGAGGTAGTCGAGGGTCTAATGGCGGTGAATGCTTTAAGTGTGGTAAACCCGGTCATTTTGCAAGGGAGTGCCCTAGTGAAGGAGAAAGAGGAGGAAGGTATGGTGGCAGAGAAAGTAGATATAGTGGTGGCTATGGTCCTGATAGGAATGCAGATCGCTCTTATGGTGGGCGCGACAGGGATTCTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGATAGGGATGGCGGTGGTCGTGATAGGGATGGCGGTGGACGTGACAGGGATGGCGGTGGGCGTGACAGGGATGGTGGTGGGCGTGACAGGGATCGCGATCGTGCGGGACCGTATGAGCGTCGTGGATCTGGAGGCCATCGTTGA
Protein sequence

>Msa0232050

MSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSRDDDDRHRERGRDSRDRNRSRDYGGSRGSNGGECFKCGKPGHFARECPSEGERGGRYGGRESRYSGGYGPDRNADRSYGGRDRDSGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDRDRAGPYERRGSGGHR*