AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0615490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615490 MtrunA17_Chr4g0051981 97.826 460 4 2 1 454 1 460 0.0 916
Msa0615490 MtrunA17_Chr8g0382111 80.000 125 19 2 336 454 1 125 7.13e-52 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615490 AT3G51270.3 66.737 475 123 8 1 454 1 461 0.0 561
Msa0615490 AT3G51270.1 66.737 475 123 8 1 454 1 461 0.0 561
Msa0615490 AT3G51270.4 66.737 475 123 8 1 454 1 461 0.0 561
Msa0615490 AT3G51270.2 64.523 482 119 11 1 454 1 458 0.0 532

Find 132 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTCTTTGTGAGAATTCC+TGG 0.205564 4_2:+64967616 None:intergenic
CCTAAGTTTAAGCTTTGTTT+AGG 0.241536 4_2:+64967053 None:intergenic
GGTTCTCACCGCCGTTGAAT+TGG 0.262655 4_2:-64972557 Msa0615490:CDS
AATTTAGTTGTTCTATTAGA+TGG 0.282060 4_2:+64967443 None:intergenic
AACATCGTAGTAGTTATAAT+TGG 0.288616 4_2:-64972054 Msa0615490:CDS
GAGCAGCTGGTGAGTTATAT+TGG 0.310702 4_2:-64967552 Msa0615490:exon
CAATTGTTGGTATAATTATT+CGG 0.324204 4_2:-64971134 Msa0615490:CDS
TCAAGTTTCACTTGTTCAGC+TGG 0.338394 4_2:+64966981 None:intergenic
GAACTTGCTGCTAGTGGCTT+TGG 0.348488 4_2:-64969119 Msa0615490:CDS
ATCAAAACTATGGTCAATAA+AGG 0.354092 4_2:-64972361 Msa0615490:CDS
CTAAGTTTAAGCTTTGTTTA+GGG 0.354544 4_2:+64967054 None:intergenic
GTTCTCACCGCCGTTGAATT+GGG 0.377927 4_2:-64972556 Msa0615490:CDS
CGGGTTAAGTTTCGTGAATC+GGG 0.385739 4_2:+64972804 None:intergenic
TCGGGTTAAGTTTCGTGAAT+CGG 0.393761 4_2:+64972803 None:intergenic
AAAGCTTAAACTTAGGCAAT+TGG 0.396835 4_2:-64967046 Msa0615490:three_prime_UTR
CATATGAATTGTTTAGACTT+TGG 0.398935 4_2:-64967237 Msa0615490:three_prime_UTR
TAAGCTTTGTTTAGGGCCTT+AGG 0.404349 4_2:+64967061 None:intergenic
CTACTATCAATTATCTATAC+TGG 0.406992 4_2:-64967208 Msa0615490:three_prime_UTR
TGTAATATCTTTCGTGTATC+GGG 0.408905 4_2:+64972785 None:intergenic
GCTCTTACATCTTTGCATTA+CGG 0.410534 4_2:+64970874 None:intergenic
CGTAGGGGACGGAAGAAACT+TGG 0.423011 4_2:-64967641 Msa0615490:CDS
TGCTATAGCATCAGCTCGTA+GGG 0.423360 4_2:-64967657 Msa0615490:CDS
CGATTATGTTCCACAGCCTC+TGG 0.430757 4_2:+64971874 None:intergenic
ATTTGATTTGCAGGAGGAAG+TGG 0.434562 4_2:-64967726 Msa0615490:intron
ATTTATCTGCAGTTTATTGA+AGG 0.437822 4_2:-64968995 Msa0615490:intron
GTCTCCGTTGGTCGCCAAAT+CGG 0.440264 4_2:-64972331 Msa0615490:CDS
TGTTCCACAGCCTCTGGAAC+AGG 0.441351 4_2:+64971880 None:intergenic
GTATGAAAGCTGCATTGATT+TGG 0.444339 4_2:-64967346 Msa0615490:three_prime_UTR
GGAAAAGAGGAGAGATTTGA+AGG 0.444975 4_2:-64968055 Msa0615490:CDS
GTTCTGCAAATGCAGCGTTC+AGG 0.447538 4_2:-64971193 Msa0615490:intron
TTCTTTACATTTGTCAGAGC+AGG 0.450728 4_2:-64968888 Msa0615490:intron
TTTCAATGAATTTAACATCA+TGG 0.456130 4_2:-64971082 Msa0615490:intron
ATCGGCGTTGGAAAAGAATC+TGG 0.462402 4_2:-64972313 Msa0615490:intron
TGTTCAGCTGGGTTCACAAA+AGG 0.464412 4_2:+64966993 None:intergenic
AGTCGTCGGACGGCGAGGAC+TGG 0.467781 4_2:+64972725 None:intergenic
GTGTAATATCTTTCGTGTAT+CGG 0.474913 4_2:+64972784 None:intergenic
TTTGAGGTTGCTGATGAAGA+TGG 0.478832 4_2:-64972154 Msa0615490:CDS
TGAAAACAGCGGATCTGAAA+AGG 0.481623 4_2:-64968032 Msa0615490:CDS
CAAGTTTCACTTGTTCAGCT+GGG 0.481972 4_2:+64966982 None:intergenic
TTAAAACTCAAACATATGTA+TGG 0.482383 4_2:-64967383 Msa0615490:three_prime_UTR
TACTAAATATATAGATTCAA+TGG 0.486589 4_2:-64967470 Msa0615490:three_prime_UTR
GATAACGACGATTCTAATGA+AGG 0.490096 4_2:-64969206 Msa0615490:CDS
TAAAGAATTTGCTTTCATGA+AGG 0.495198 4_2:-64972005 Msa0615490:intron
CCTAAACAAAGCTTAAACTT+AGG 0.496307 4_2:-64967053 Msa0615490:three_prime_UTR
TTCAAATGCAAATGAGCAGC+TGG 0.501357 4_2:-64967565 Msa0615490:CDS
TCTTCAATAGACAGCAGTGC+TGG 0.505671 4_2:-64969155 Msa0615490:CDS
AATTTAGTCGTTCTAACAGA+TGG 0.505936 4_2:+64967412 None:intergenic
TTCTTCTAGTTCAATACTTG+AGG 0.508776 4_2:-64967163 Msa0615490:three_prime_UTR
GTGAAAATTGCAGCGGATGA+CGG 0.509119 4_2:+64972683 None:intergenic
TGTTCCTCCGAAACTTCTGC+TGG 0.509881 4_2:-64967090 Msa0615490:three_prime_UTR
AATCATAACCAAGGTAGGTA+AGG 0.513088 4_2:+64972392 None:intergenic
GACGGAAGAAACTTGGATCC+AGG 0.515564 4_2:-64967634 Msa0615490:CDS
GTTCAGCGGGGACAATTTCG+TGG 0.518585 4_2:+64972524 None:intergenic
TTTGATTTGCAGGAGGAAGT+GGG 0.518753 4_2:-64967725 Msa0615490:intron
CATGTTTGAGACGAGCGATT+CGG 0.519870 4_2:+64972494 None:intergenic
CATATGTATGGAATGTCCTT+CGG 0.520054 4_2:-64967371 Msa0615490:three_prime_UTR
GTGCTATAGCATCAGCTCGT+AGG 0.522126 4_2:-64967658 Msa0615490:CDS
GTTTCTCATGCCCAATTCAA+CGG 0.522663 4_2:+64972546 None:intergenic
TGTTGGTATAATTATTCGGC+TGG 0.523681 4_2:-64971130 Msa0615490:CDS
ATTTCCTGTTCCAGAGGCTG+TGG 0.524597 4_2:-64971884 Msa0615490:CDS
TTATGGCTATGAAGTTACAT+AGG 0.526717 4_2:-64972126 Msa0615490:CDS
GTCATTCGAATATGTTGAAG+TGG 0.527978 4_2:-64967502 Msa0615490:three_prime_UTR
TTTCCGACTTATCAAACTCT+CGG 0.529576 4_2:+64972640 None:intergenic
TGAAACCATGTTTAGGATGA+GGG 0.529887 4_2:-64968091 Msa0615490:intron
AGAGACATAATTATTCTCCC+TGG 0.530051 4_2:+64967304 None:intergenic
CAAACATGGTGGCACCTACA+AGG 0.530222 4_2:-64972479 Msa0615490:CDS
GGATTTCGCCTTACCTACCT+TGG 0.531140 4_2:-64972400 Msa0615490:CDS
AAGAAAATCATAACCAAGGT+AGG 0.534589 4_2:+64972387 None:intergenic
AAGATGAGGAAGATATTCAA+AGG 0.538915 4_2:-64969091 Msa0615490:CDS
TGATTTGCTAGATATATTTG+AGG 0.539655 4_2:-64972170 Msa0615490:intron
TGCGACACAGACACCATTTG+CGG 0.549608 4_2:+64970897 None:intergenic
ATTCGGTCGATAAGTTCAGC+GGG 0.550067 4_2:+64972511 None:intergenic
GCTATGAAGTTACATAGGCT+TGG 0.554098 4_2:-64972121 Msa0615490:CDS
ATGACATGAGGTCAATCGCA+TGG 0.556701 4_2:+64967520 None:intergenic
AAAGGTGTCTTCGTCTCCGT+TGG 0.561674 4_2:-64972343 Msa0615490:CDS
ACATGAAAGTCATGGAAAAG+AGG 0.563019 4_2:-64968068 Msa0615490:CDS
ACAAATTCTGATAGTGAAGA+TGG 0.564391 4_2:-64968956 Msa0615490:CDS
GTTGGTCGCCAAATCGGCGT+TGG 0.564870 4_2:-64972325 Msa0615490:CDS
GCGGATGACGGAGAAGGAAG+CGG 0.567373 4_2:+64972695 None:intergenic
GATAAGGAACTTGCTGCTAG+TGG 0.569623 4_2:-64969125 Msa0615490:CDS
AGACCGAGAGTTTGATAAGT+CGG 0.570330 4_2:-64972643 Msa0615490:five_prime_UTR
AGATGAGGAAGATATTCAAA+GGG 0.572279 4_2:-64969090 Msa0615490:intron
CGAATCGCTCGTCTCAAACA+TGG 0.579259 4_2:-64972493 Msa0615490:CDS
GATGAGGGACATGAAAGTCA+TGG 0.580821 4_2:-64968076 Msa0615490:CDS
GTAATCATGTCGCTTGTCCA+AGG 0.582155 4_2:-64971844 Msa0615490:CDS
AACGCCGATTTGGCGACCAA+CGG 0.583074 4_2:+64972327 None:intergenic
GATCAGGCTTTGCAAACACA+TGG 0.584897 4_2:-64971907 Msa0615490:intron
TAGCATCAGCTCGTAGGGGA+CGG 0.585566 4_2:-64967652 Msa0615490:CDS
CAAATTCTTTAAGCGCAGCA+AGG 0.587058 4_2:+64972017 None:intergenic
ATTATTCGGCTGGCAGAACA+TGG 0.588090 4_2:-64971120 Msa0615490:CDS
TATCAATTATCTATACTGGC+AGG 0.588773 4_2:-64967204 Msa0615490:three_prime_UTR
AATGAAGGGAGAGAGGAAGC+CGG 0.589391 4_2:-64969191 Msa0615490:CDS
CAGGAATTCTCACAAAGACA+AGG 0.593405 4_2:-64967615 Msa0615490:CDS
TGACATGAGGTCAATCGCAT+GGG 0.595932 4_2:+64967521 None:intergenic
AAACTTAGGCAATTGGCTCG+CGG 0.599444 4_2:-64967039 Msa0615490:three_prime_UTR
GTTAAGTTTCGTGAATCGGG+CGG 0.599819 4_2:+64972807 None:intergenic
ATTGCAGCGGATGACGGAGA+AGG 0.600404 4_2:+64972689 None:intergenic
TAGGTCATCTCAAAATGCTA+AGG 0.601055 4_2:-64967588 Msa0615490:CDS
GCACTTACAGAGGATAACCT+TGG 0.602178 4_2:+64971827 None:intergenic
CGATTCTAATGAAGGGAGAG+AGG 0.607327 4_2:-64969198 Msa0615490:CDS
CCCTAAAATCATCTTTCGAG+AGG 0.609662 4_2:+64972578 None:intergenic
ACATGGATTTCCTGTTCCAG+AGG 0.611150 4_2:-64971890 Msa0615490:CDS
ATAACGACGATTCTAATGAA+GGG 0.618074 4_2:-64969205 Msa0615490:CDS
GTGTAAGTCGTCGGACGGCG+AGG 0.618701 4_2:+64972720 None:intergenic
GAACGACAGAATACATAGGA+AGG 0.622865 4_2:+64967267 None:intergenic
TCTGCAGTTTATTGAAGGCG+AGG 0.623489 4_2:-64968990 Msa0615490:intron
CAAGTACAAGATTCCTCAAG+GGG 0.624299 4_2:+64966861 None:intergenic
GAAGCGGTGGTGTAAGTCGT+CGG 0.625296 4_2:+64972711 None:intergenic
TGCAGCTTTCATACCTCCGA+AGG 0.626462 4_2:+64967355 None:intergenic
CGGTGGTGTAAGTCGTCGGA+CGG 0.626520 4_2:+64972715 None:intergenic
GCAGTTTATTGAAGGCGAGG+TGG 0.636859 4_2:-64968987 Msa0615490:intron
CACGACTCTACTAAATACGA+TGG 0.637122 4_2:-64972421 Msa0615490:CDS
GCAAGAACGACAGAATACAT+AGG 0.641202 4_2:+64967263 None:intergenic
ACAAGTACAAGATTCCTCAA+GGG 0.643012 4_2:+64966860 None:intergenic
TCGATATGTGAAAATTGCAG+CGG 0.646218 4_2:+64972676 None:intergenic
CTCACAAAGACAAGGGTGGT+AGG 0.646398 4_2:-64967607 Msa0615490:CDS
TGATAGTGAAGATGGTGACT+TGG 0.646642 4_2:-64968948 Msa0615490:CDS
ATGTATGGAATGTCCTTCGG+AGG 0.658752 4_2:-64967368 Msa0615490:three_prime_UTR
GATGACGGAGAAGGAAGCGG+TGG 0.661224 4_2:+64972698 None:intergenic
AAAGGAAGATGCAAGCGACA+CGG 0.662177 4_2:-64968014 Msa0615490:intron
TGGCAAGAAAATCATAACCA+AGG 0.675307 4_2:+64972383 None:intergenic
CAACATATTCGAATGACATG+AGG 0.677238 4_2:+64967508 None:intergenic
AAAACCAGCAGAAGTTTCGG+AGG 0.681603 4_2:+64967086 None:intergenic
GATTCGGTCGATAAGTTCAG+CGG 0.686973 4_2:+64972510 None:intergenic
TCTCATGCCCAATTCAACGG+CGG 0.688093 4_2:+64972549 None:intergenic
AGGAATTCTCACAAAGACAA+GGG 0.690996 4_2:-64967614 Msa0615490:CDS
AGATTTGAAGGTGAAAACAG+CGG 0.713597 4_2:-64968043 Msa0615490:CDS
AATTCTCACAAAGACAAGGG+TGG 0.720526 4_2:-64967611 Msa0615490:CDS
ATCGCTCGTCTCAAACATGG+TGG 0.722151 4_2:-64972490 Msa0615490:CDS
GCTATAGCATCAGCTCGTAG+GGG 0.722557 4_2:-64967656 Msa0615490:CDS
TTCGGTCGATAAGTTCAGCG+GGG 0.752441 4_2:+64972512 None:intergenic
AAGTACAAGATTCCTCAAGG+GGG 0.787550 4_2:+64966862 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATTGTTAAATTATTTT+CGG - chr4_2:64969590-64969609 Msa0615490:intron 10.0%
!! AAAATATCTATAAATCTCTT+AGG + chr4_2:64968297-64968316 None:intergenic 15.0%
!! AAAAAAAAACAGAATTTGAA+GGG + chr4_2:64968854-64968873 None:intergenic 15.0%
!!! AACTTTTTATTGAGTTTAAT+TGG - chr4_2:64969030-64969049 Msa0615490:intron 15.0%
!!! TTAACTTATTGAAAGATTTT+GGG - chr4_2:64970361-64970380 Msa0615490:intron 15.0%
!!! TTATTTTGATGAATTTAGTT+AGG - chr4_2:64970890-64970909 Msa0615490:CDS 15.0%
!! AAAGAAATATAAAACAATAG+TGG - chr4_2:64970930-64970949 Msa0615490:CDS 15.0%
!! GAAAATTAATTAACTACAAA+AGG - chr4_2:64971061-64971080 Msa0615490:intron 15.0%
!! TCAATTAGAATTGTAATATA+CGG + chr4_2:64971557-64971576 None:intergenic 15.0%
!! AAATCAAATTAATACCATTA+TGG + chr4_2:64971942-64971961 None:intergenic 15.0%
!! TACTAAATATATAGATTCAA+TGG - chr4_2:64972209-64972228 Msa0615490:intron 15.0%
!! ATGAGAAATAACATAGATTT+CGG - chr4_2:64968128-64968147 Msa0615490:intron 20.0%
!!! AGATATTTTGAATTACTCTA+AGG - chr4_2:64968308-64968327 Msa0615490:intron 20.0%
!! AGGATAGAGTTTAAATATTA+TGG - chr4_2:64968328-64968347 Msa0615490:intron 20.0%
!! GGATAGAGTTTAAATATTAT+GGG - chr4_2:64968329-64968348 Msa0615490:intron 20.0%
!! CAATTGTTGGTATAATTATT+CGG - chr4_2:64968545-64968564 Msa0615490:intron 20.0%
!! TTTCAATGAATTTAACATCA+TGG - chr4_2:64968597-64968616 Msa0615490:intron 20.0%
!!! TCATTACATGTCATTTTTTA+TGG - chr4_2:64968683-64968702 Msa0615490:intron 20.0%
!! GAAAAAAAAACAGAATTTGA+AGG + chr4_2:64968855-64968874 None:intergenic 20.0%
!! TAATAGTGATATTATGTGTT+GGG + chr4_2:64969169-64969188 None:intergenic 20.0%
!! ATAATAGTGATATTATGTGT+TGG + chr4_2:64969170-64969189 None:intergenic 20.0%
!!! TCAACTAATATATTTTCGTT+AGG - chr4_2:64969194-64969213 Msa0615490:CDS 20.0%
!! CATTTCAAAATTAAGGAATT+TGG - chr4_2:64969374-64969393 Msa0615490:intron 20.0%
!!! AAAATTAAGGAATTTGGAAT+TGG - chr4_2:64969380-64969399 Msa0615490:intron 20.0%
!!! AAATTAAGGAATTTGGAATT+GGG - chr4_2:64969381-64969400 Msa0615490:intron 20.0%
!! TTAGTTAAGTAGTAATGTTA+AGG - chr4_2:64969418-64969437 Msa0615490:intron 20.0%
!!! TTATTTCTAGAAAATATCAC+AGG + chr4_2:64969812-64969831 None:intergenic 20.0%
!!! CTTAACTTATTGAAAGATTT+TGG - chr4_2:64970360-64970379 Msa0615490:intron 20.0%
!! AATGCATTATAACTAAGAAA+AGG + chr4_2:64970631-64970650 None:intergenic 20.0%
!! GATAAATTTGAAGATATTTG+AGG + chr4_2:64970671-64970690 None:intergenic 20.0%
!! TGTTATATTAGAAGAATCAA+GGG + chr4_2:64971019-64971038 None:intergenic 20.0%
!!! TTTCTTCATGATGAATTTTT+TGG - chr4_2:64971743-64971762 Msa0615490:intron 20.0%
!!! TTCTTCATGATGAATTTTTT+GGG - chr4_2:64971744-64971763 Msa0615490:intron 20.0%
!! AATTTAGTTGTTCTATTAGA+TGG + chr4_2:64972239-64972258 None:intergenic 20.0%
!! TTAAAACTCAAACATATGTA+TGG - chr4_2:64972296-64972315 Msa0615490:intron 20.0%
!!! TTTATTGACCATAGTTTTGA+TGG + chr4_2:64967319-64967338 None:intergenic 25.0%
! ATCAAAACTATGGTCAATAA+AGG - chr4_2:64967318-64967337 Msa0615490:three_prime_UTR 25.0%
!!! TGATTTGCTAGATATATTTG+AGG - chr4_2:64967509-64967528 Msa0615490:three_prime_UTR 25.0%
! TGATGAAGATGGAAAAATTA+TGG - chr4_2:64967536-64967555 Msa0615490:three_prime_UTR 25.0%
! AACATCGTAGTAGTTATAAT+TGG - chr4_2:64967625-64967644 Msa0615490:CDS 25.0%
!! TAAAGAATTTGCTTTCATGA+AGG - chr4_2:64967674-64967693 Msa0615490:CDS 25.0%
! TTCAAACATAAAAGTCGTTT+AGG - chr4_2:64967890-64967909 Msa0615490:intron 25.0%
! TCAAACATAAAAGTCGTTTA+GGG - chr4_2:64967891-64967910 Msa0615490:intron 25.0%
! TATAATTGCTAAGTACTCTT+AGG - chr4_2:64967978-64967997 Msa0615490:intron 25.0%
! ATAATTGCTAAGTACTCTTA+GGG - chr4_2:64967979-64967998 Msa0615490:intron 25.0%
! TTAAGATTAAGAGTTGAGTA+AGG + chr4_2:64968193-64968212 None:intergenic 25.0%
! CAAACAAAAGATAGAAAATG+AGG + chr4_2:64968938-64968957 None:intergenic 25.0%
! CATCATATCTTAAATTTCTG+TGG + chr4_2:64968976-64968995 None:intergenic 25.0%
! CAAGGAAAGATTATAAGTTA+AGG + chr4_2:64969220-64969239 None:intergenic 25.0%
!! TTATAATCTTTCCTTGTTTC+AGG - chr4_2:64969224-64969243 Msa0615490:CDS 25.0%
!!! GTTATTTTGACATTATGTGT+TGG - chr4_2:64969301-64969320 Msa0615490:intron 25.0%
!! GGTGTTACATTTCAAAATTA+AGG - chr4_2:64969367-64969386 Msa0615490:intron 25.0%
!! AATTAAGGAATTTGGAATTG+GGG - chr4_2:64969382-64969401 Msa0615490:intron 25.0%
! AAAATTGATTGCTCAACAAA+GGG + chr4_2:64969752-64969771 None:intergenic 25.0%
! AAAAATTGATTGCTCAACAA+AGG + chr4_2:64969753-64969772 None:intergenic 25.0%
! TATCACAGGACAAAAATTAA+GGG + chr4_2:64969798-64969817 None:intergenic 25.0%
! ATATCACAGGACAAAAATTA+AGG + chr4_2:64969799-64969818 None:intergenic 25.0%
! TATCAATGTTTGAATTCCTA+GGG + chr4_2:64969884-64969903 None:intergenic 25.0%
!! GATTTGATCCTAATTTTCTA+TGG - chr4_2:64969996-64970015 Msa0615490:intron 25.0%
! CAATATACTAATAGTGTGTA+TGG + chr4_2:64970302-64970321 None:intergenic 25.0%
! ATTTATCTGCAGTTTATTGA+AGG - chr4_2:64970684-64970703 Msa0615490:intron 25.0%
! GTATGACAATAAAAAGCTAA+TGG + chr4_2:64970825-64970844 None:intergenic 25.0%
! TATTGTCATACAAGATATAC+TGG - chr4_2:64970834-64970853 Msa0615490:intron 25.0%
!! TTTTGATGAATTTAGTTAGG+AGG - chr4_2:64970893-64970912 Msa0615490:CDS 25.0%
! GTGTTATATTAGAAGAATCA+AGG + chr4_2:64971020-64971039 None:intergenic 25.0%
!!! ACTGCATAACTTTTTTTGAA+CGG - chr4_2:64971038-64971057 Msa0615490:intron 25.0%
!! GCATAATTAAAGAAGGTTTT+GGG - chr4_2:64971295-64971314 Msa0615490:intron 25.0%
!!! ATTTAAAGTTTTCATTGCAC+TGG - chr4_2:64971392-64971411 Msa0615490:intron 25.0%
! TTGTTAATGAAACCATGTTT+AGG - chr4_2:64971581-64971600 Msa0615490:intron 25.0%
!!! ATGGTATTAATTTGATTTGC+AGG - chr4_2:64971944-64971963 Msa0615490:intron 25.0%
! CATATGAATTGTTTAGACTT+TGG - chr4_2:64972442-64972461 Msa0615490:CDS 25.0%
! CTACTATCAATTATCTATAC+TGG - chr4_2:64972471-64972490 Msa0615490:CDS 25.0%
!!! CTAAGTTTAAGCTTTGTTTA+GGG + chr4_2:64972628-64972647 None:intergenic 25.0%
TGTAATATCTTTCGTGTATC+GGG + chr4_2:64966897-64966916 None:intergenic 30.0%
GTGTAATATCTTTCGTGTAT+CGG + chr4_2:64966898-64966917 None:intergenic 30.0%
AAGAAAATCATAACCAAGGT+AGG + chr4_2:64967295-64967314 None:intergenic 30.0%
! TTTTCTTGCCATCAAAACTA+TGG - chr4_2:64967308-64967327 Msa0615490:three_prime_UTR 30.0%
TTATGGCTATGAAGTTACAT+AGG - chr4_2:64967553-64967572 Msa0615490:exon 30.0%
ACAATTCAAGTACATAGCTA+GGG + chr4_2:64967712-64967731 None:intergenic 30.0%
AACAATTCAAGTACATAGCT+AGG + chr4_2:64967713-64967732 None:intergenic 30.0%
! GTTTGAAACAACACGAAAAA+GGG + chr4_2:64967877-64967896 None:intergenic 30.0%
! TGTTTGAAACAACACGAAAA+AGG + chr4_2:64967878-64967897 None:intergenic 30.0%
TTTGTATAACATTTGACGCA+TGG - chr4_2:64968008-64968027 Msa0615490:intron 30.0%
ATTGGTATTACATTAGTACC+AGG - chr4_2:64968038-64968057 Msa0615490:CDS 30.0%
ACATCTTGTTCGTTTAGATA+AGG - chr4_2:64968098-64968117 Msa0615490:intron 30.0%
ATAACATAGATTTCGGATTG+TGG - chr4_2:64968135-64968154 Msa0615490:intron 30.0%
!! TTGTTCTTAAGCTTGCTTTT+TGG - chr4_2:64968378-64968397 Msa0615490:intron 30.0%
CAAAACCAGTGTAAAATATG+TGG + chr4_2:64968437-64968456 None:intergenic 30.0%
!!! CACATATTTTACACTGGTTT+TGG - chr4_2:64968435-64968454 Msa0615490:intron 30.0%
ATTGCTTGAATTTGTATGCT+TGG - chr4_2:64968464-64968483 Msa0615490:intron 30.0%
!!! ACAGTTTTTGAGACAATTGT+TGG - chr4_2:64968532-64968551 Msa0615490:intron 30.0%
!!! TTTTTTATGGCTTTTACCTC+TGG - chr4_2:64968696-64968715 Msa0615490:intron 30.0%
TCATACAAGCATGAAATCAA+AGG + chr4_2:64968877-64968896 None:intergenic 30.0%
!! TCTTCAAGTTTTTCAGAAAG+AGG - chr4_2:64969272-64969291 Msa0615490:intron 30.0%
! ATTAAGGAATTTGGAATTGG+GGG - chr4_2:64969383-64969402 Msa0615490:intron 30.0%
AATGCAGAACAAACATTAGA+CGG + chr4_2:64969515-64969534 None:intergenic 30.0%
CTAATGTTTGTTCTGCATTA+AGG - chr4_2:64969516-64969535 Msa0615490:intron 30.0%
GTATCAATGTTTGAATTCCT+AGG + chr4_2:64969885-64969904 None:intergenic 30.0%
AAGATCTTAACATGCAAAAC+AGG + chr4_2:64969932-64969951 None:intergenic 30.0%
TGCATGTTAAGATCTTTGAT+AGG - chr4_2:64969936-64969955 Msa0615490:intron 30.0%
CAAATCAAGTAGCATGAAAA+AGG + chr4_2:64969982-64970001 None:intergenic 30.0%
AGCATTTGCCATAGAAAATT+AGG + chr4_2:64970007-64970026 None:intergenic 30.0%
AGAGAGACCAAATAGAAAAT+GGG + chr4_2:64970193-64970212 None:intergenic 30.0%
!!! AAAGATTTTGGGTTTGTCTT+TGG - chr4_2:64970372-64970391 Msa0615490:intron 30.0%
TGAACCTAAAACAGAAAAGA+GGG + chr4_2:64970427-64970446 None:intergenic 30.0%
TTGAACCTAAAACAGAAAAG+AGG + chr4_2:64970428-64970447 None:intergenic 30.0%
ATAACGACGATTCTAATGAA+GGG - chr4_2:64970474-64970493 Msa0615490:intron 30.0%
! TGAAGAAAAACAGAGTTTTC+CGG + chr4_2:64970510-64970529 None:intergenic 30.0%
AAGATGAGGAAGATATTCAA+AGG - chr4_2:64970588-64970607 Msa0615490:intron 30.0%
AGATGAGGAAGATATTCAAA+GGG - chr4_2:64970589-64970608 Msa0615490:intron 30.0%
! ACAAATTCTGATAGTGAAGA+TGG - chr4_2:64970723-64970742 Msa0615490:intron 30.0%
! ATACAAGATATACTGGCTAT+GGG - chr4_2:64970841-64970860 Msa0615490:intron 30.0%
AACAAATAGACTCATCTGTT+AGG - chr4_2:64970966-64970985 Msa0615490:intron 30.0%
ACAAATAGACTCATCTGTTA+GGG - chr4_2:64970967-64970986 Msa0615490:intron 30.0%
!!! CTGCATAACTTTTTTTGAAC+GGG - chr4_2:64971039-64971058 Msa0615490:intron 30.0%
!! ATGTTTGTTGTCCTGTAAAT+GGG + chr4_2:64971103-64971122 None:intergenic 30.0%
!! TATGTTTGTTGTCCTGTAAA+TGG + chr4_2:64971104-64971123 None:intergenic 30.0%
GGACAACAAACATAAAACAA+CGG - chr4_2:64971110-64971129 Msa0615490:CDS 30.0%
CTCTAATAAGGATACCAATA+GGG + chr4_2:64971238-64971257 None:intergenic 30.0%
TCTCTAATAAGGATACCAAT+AGG + chr4_2:64971239-64971258 None:intergenic 30.0%
GGGTCTATTATTCTCTAATA+AGG + chr4_2:64971250-64971269 None:intergenic 30.0%
TAATTATGCCGTGTCATATT+CGG + chr4_2:64971284-64971303 None:intergenic 30.0%
! GGCATAATTAAAGAAGGTTT+TGG - chr4_2:64971294-64971313 Msa0615490:intron 30.0%
TGATATTCTAAGTGAACTGT+GGG - chr4_2:64971440-64971459 Msa0615490:intron 30.0%
ACAGATCTTAGATAAACTAC+AGG + chr4_2:64971482-64971501 None:intergenic 30.0%
TTTACAGCATTCCTTGTTAA+CGG + chr4_2:64971783-64971802 None:intergenic 30.0%
! TCCAATTGCATTTTCATCTT+GGG + chr4_2:64971809-64971828 None:intergenic 30.0%
! ATCCAATTGCATTTTCATCT+TGG + chr4_2:64971810-64971829 None:intergenic 30.0%
! CCATTATGGTTTTCATGTAA+AGG + chr4_2:64971928-64971947 None:intergenic 30.0%
CCTTTACATGAAAACCATAA+TGG - chr4_2:64971925-64971944 Msa0615490:intron 30.0%
!! GTATTAATTTGATTTGCAGG+AGG - chr4_2:64971947-64971966 Msa0615490:intron 30.0%
AATTTAGTCGTTCTAACAGA+TGG + chr4_2:64972270-64972289 None:intergenic 30.0%
!!! TGAGTTGTTTTTATATCTCC+AGG - chr4_2:64972357-64972376 Msa0615490:CDS 30.0%
!!! GAGTTGTTTTTATATCTCCA+GGG - chr4_2:64972358-64972377 Msa0615490:CDS 30.0%
TATCAATTATCTATACTGGC+AGG - chr4_2:64972475-64972494 Msa0615490:CDS 30.0%
!! TTCTTCTAGTTCAATACTTG+AGG - chr4_2:64972516-64972535 Msa0615490:CDS 30.0%
!! CCTAAGTTTAAGCTTTGTTT+AGG + chr4_2:64972629-64972648 None:intergenic 30.0%
CCTAAACAAAGCTTAAACTT+AGG - chr4_2:64972626-64972645 Msa0615490:exon 30.0%
AAAGCTTAAACTTAGGCAAT+TGG - chr4_2:64972633-64972652 Msa0615490:five_prime_UTR 30.0%
TCGATATGTGAAAATTGCAG+CGG + chr4_2:64967006-64967025 None:intergenic 35.0%
TTTCCGACTTATCAAACTCT+CGG + chr4_2:64967042-64967061 None:intergenic 35.0%
! ACCTCTCGAAAGATGATTTT+AGG - chr4_2:64967100-64967119 Msa0615490:three_prime_UTR 35.0%
! CCTCTCGAAAGATGATTTTA+GGG - chr4_2:64967101-64967120 Msa0615490:three_prime_UTR 35.0%
!! CAAGTTTTTCAGAACCTTGT+AGG + chr4_2:64967217-64967236 None:intergenic 35.0%
AATCATAACCAAGGTAGGTA+AGG + chr4_2:64967290-64967309 None:intergenic 35.0%
TGGCAAGAAAATCATAACCA+AGG + chr4_2:64967299-64967318 None:intergenic 35.0%
!! ATGTTTTAAGTAGTCACGCT+TGG + chr4_2:64967610-64967629 None:intergenic 35.0%
! ACAAGATTAGTCAACTCTGA+TGG - chr4_2:64967937-64967956 Msa0615490:intron 35.0%
CGAACAAGATGTAAAAGCAA+GGG + chr4_2:64968090-64968109 None:intergenic 35.0%
ACGAACAAGATGTAAAAGCA+AGG + chr4_2:64968091-64968110 None:intergenic 35.0%
!!! CTTAAGCTTGCTTTTTGGTT+TGG - chr4_2:64968383-64968402 Msa0615490:intron 35.0%
CCAGTGTAAAATATGTGGAA+GGG + chr4_2:64968432-64968451 None:intergenic 35.0%
ACCAGTGTAAAATATGTGGA+AGG + chr4_2:64968433-64968452 None:intergenic 35.0%
TTGTCTCAAAAACTGTCTCT+GGG + chr4_2:64968528-64968547 None:intergenic 35.0%
ATTGTCTCAAAAACTGTCTC+TGG + chr4_2:64968529-64968548 None:intergenic 35.0%
TGTTGGTATAATTATTCGGC+TGG - chr4_2:64968549-64968568 Msa0615490:intron 35.0%
TTTCTTCATCGTCAATCTAC+AGG + chr4_2:64968742-64968761 None:intergenic 35.0%
!! TGTGATTGATTTTCCGCAAA+TGG - chr4_2:64968769-64968788 Msa0615490:intron 35.0%
GCTCTTACATCTTTGCATTA+CGG + chr4_2:64968808-64968827 None:intergenic 35.0%
AAGGGACATAATACCATACA+AGG + chr4_2:64968836-64968855 None:intergenic 35.0%
AATTGGTACGTAGTATGTAC+TGG - chr4_2:64969047-64969066 Msa0615490:intron 35.0%
! ACTGCTTGGTTTGAGAATAA+TGG - chr4_2:64969338-64969357 Msa0615490:intron 35.0%
! CTGCTTGGTTTGAGAATAAT+GGG - chr4_2:64969339-64969358 Msa0615490:intron 35.0%
AGTCAACTGCTAGATATGTA+AGG + chr4_2:64969444-64969463 None:intergenic 35.0%
AAGGATAGACACAGGAATAT+AGG - chr4_2:64969535-64969554 Msa0615490:intron 35.0%
! GAGAACTGTTTGAGTTATCT+GGG + chr4_2:64969730-64969749 None:intergenic 35.0%
AAAATTAAGGGACAAGACAC+AGG + chr4_2:64969786-64969805 None:intergenic 35.0%
CAAAATGAGCAACTTTGCAT+TGG + chr4_2:64970130-64970149 None:intergenic 35.0%
! CAATGCAAAGTTGCTCATTT+TGG - chr4_2:64970128-64970147 Msa0615490:intron 35.0%
! AACATGGCCCATTTTCTATT+TGG - chr4_2:64970183-64970202 Msa0615490:intron 35.0%
CAGAGAGACCAAATAGAAAA+TGG + chr4_2:64970194-64970213 None:intergenic 35.0%
TTTCTATTTGGTCTCTCTGA+TGG - chr4_2:64970195-64970214 Msa0615490:intron 35.0%
GGACAAATTATCAAGACAAC+TGG + chr4_2:64970406-64970425 None:intergenic 35.0%
! TTGTCCCTCTTTTCTGTTTT+AGG - chr4_2:64970420-64970439 Msa0615490:CDS 35.0%
GATAACGACGATTCTAATGA+AGG - chr4_2:64970473-64970492 Msa0615490:intron 35.0%
!! TGGCTTTGGTAAAAAAGATG+AGG - chr4_2:64970574-64970593 Msa0615490:intron 35.0%
AGGAAGATATTCAAAGGGTA+TGG - chr4_2:64970594-64970613 Msa0615490:intron 35.0%
! AAGATATTCAAAGGGTATGG+TGG - chr4_2:64970597-64970616 Msa0615490:intron 35.0%
TTCTTTACATTTGTCAGAGC+AGG - chr4_2:64970791-64970810 Msa0615490:intron 35.0%
! CATACAAGATATACTGGCTA+TGG - chr4_2:64970840-64970859 Msa0615490:intron 35.0%
CAAATAGACTCATCTGTTAG+GGG - chr4_2:64970968-64970987 Msa0615490:intron 35.0%
CAAAGTTCAAACCCATTTAC+AGG - chr4_2:64971089-64971108 Msa0615490:CDS 35.0%
!! TTGTATATCTAGGCTTTAGG+TGG + chr4_2:64971138-64971157 None:intergenic 35.0%
GGATTGTATATCTAGGCTTT+AGG + chr4_2:64971141-64971160 None:intergenic 35.0%
AGAGAATAATAGACCCAATC+CGG - chr4_2:64971254-64971273 Msa0615490:intron 35.0%
AATTATGCCGTGTCATATTC+GGG + chr4_2:64971283-64971302 None:intergenic 35.0%
TGACACGGCATAATTAAAGA+AGG - chr4_2:64971288-64971307 Msa0615490:intron 35.0%
!!! AAGGTTTTGGGTATTTGCTT+AGG - chr4_2:64971307-64971326 Msa0615490:intron 35.0%
TTTGCTTAGGACATTAGTGT+TGG - chr4_2:64971320-64971339 Msa0615490:intron 35.0%
! ACATTAGTGTTGGAGAACTT+AGG - chr4_2:64971330-64971349 Msa0615490:intron 35.0%
ATAAAGCCTAGAAAGCAAGT+TGG + chr4_2:64971364-64971383 None:intergenic 35.0%
GTGATATTCTAAGTGAACTG+TGG - chr4_2:64971439-64971458 Msa0615490:intron 35.0%
! ATGAAACCATGTTTAGGATG+AGG - chr4_2:64971587-64971606 Msa0615490:intron 35.0%
! TGAAACCATGTTTAGGATGA+GGG - chr4_2:64971588-64971607 Msa0615490:intron 35.0%
ACATGAAAGTCATGGAAAAG+AGG - chr4_2:64971611-64971630 Msa0615490:intron 35.0%
AGATTTGAAGGTGAAAACAG+CGG - chr4_2:64971636-64971655 Msa0615490:intron 35.0%
TTACAGCATTCCTTGTTAAC+GGG + chr4_2:64971782-64971801 None:intergenic 35.0%
TCCCAAGATGAAAATGCAAT+TGG - chr4_2:64971805-64971824 Msa0615490:intron 35.0%
CATGTAAAGGCTAGATAACA+AGG + chr4_2:64971915-64971934 None:intergenic 35.0%
AGGAATTCTCACAAAGACAA+GGG - chr4_2:64972065-64972084 Msa0615490:CDS 35.0%
TAGGTCATCTCAAAATGCTA+AGG - chr4_2:64972091-64972110 Msa0615490:CDS 35.0%
CAACATATTCGAATGACATG+AGG + chr4_2:64972174-64972193 None:intergenic 35.0%
GTCATTCGAATATGTTGAAG+TGG - chr4_2:64972177-64972196 Msa0615490:intron 35.0%
CATATGTATGGAATGTCCTT+CGG - chr4_2:64972308-64972327 Msa0615490:intron 35.0%
!! GTATGAAAGCTGCATTGATT+TGG - chr4_2:64972333-64972352 Msa0615490:CDS 35.0%
AGAGACATAATTATTCTCCC+TGG + chr4_2:64972378-64972397 None:intergenic 35.0%
TCGGGTTAAGTTTCGTGAAT+CGG + chr4_2:64966879-64966898 None:intergenic 40.0%
AGACCGAGAGTTTGATAAGT+CGG - chr4_2:64967036-64967055 Msa0615490:three_prime_UTR 40.0%
CCCTAAAATCATCTTTCGAG+AGG + chr4_2:64967104-64967123 None:intergenic 40.0%
GTTTCTCATGCCCAATTCAA+CGG + chr4_2:64967136-64967155 None:intergenic 40.0%
CACGACTCTACTAAATACGA+TGG - chr4_2:64967258-64967277 Msa0615490:three_prime_UTR 40.0%
!! ATTCTTTTCCAACGCCGATT+TGG + chr4_2:64967365-64967384 None:intergenic 40.0%
! TTTGAGGTTGCTGATGAAGA+TGG - chr4_2:64967525-64967544 Msa0615490:three_prime_UTR 40.0%
GCTATGAAGTTACATAGGCT+TGG - chr4_2:64967558-64967577 Msa0615490:exon 40.0%
CAAATTCTTTAAGCGCAGCA+AGG + chr4_2:64967665-64967684 None:intergenic 40.0%
GACATGTTCTTTGCTTGATC+AGG - chr4_2:64967756-64967775 Msa0615490:intron 40.0%
! TTAGTCAACTCTGATGGTGT+TGG - chr4_2:64967943-64967962 Msa0615490:intron 40.0%
! TCTGATGGTGTTGGATATTG+CGG - chr4_2:64967952-64967971 Msa0615490:intron 40.0%
TTGCTAAGTACTCTTAGGGA+TGG - chr4_2:64967983-64968002 Msa0615490:intron 40.0%
TTGACGCATGGTCTATGAAT+TGG - chr4_2:64968020-64968039 Msa0615490:CDS 40.0%
CAAGATGTAAAAGCAAGGGA+CGG + chr4_2:64968086-64968105 None:intergenic 40.0%
AAGAGTTGAGTAAGGCTTAG+TGG + chr4_2:64968185-64968204 None:intergenic 40.0%
GTAAAATATGTGGAAGGGAG+TGG + chr4_2:64968427-64968446 None:intergenic 40.0%
! CCCTTCCACATATTTTACAC+TGG - chr4_2:64968429-64968448 Msa0615490:intron 40.0%
CATCGTCAATCTACAGGAAA+CGG + chr4_2:64968736-64968755 None:intergenic 40.0%
GTAAGAGCTTCTTCCTTGTA+TGG - chr4_2:64968820-64968839 Msa0615490:intron 40.0%
! CGATCAAAGTACCTGAAACA+AGG + chr4_2:64969238-64969257 None:intergenic 40.0%
TGTTCGTGAATTTCACTGCT+TGG - chr4_2:64969324-64969343 Msa0615490:intron 40.0%
! TGGTTTGAGAATAATGGGAG+AGG - chr4_2:64969344-64969363 Msa0615490:intron 40.0%
! GGTTTGAGAATAATGGGAGA+GGG - chr4_2:64969345-64969364 Msa0615490:intron 40.0%
! GTTTGAGAATAATGGGAGAG+GGG - chr4_2:64969346-64969365 Msa0615490:intron 40.0%
TCTGCATTAAGGATAGACAC+AGG - chr4_2:64969527-64969546 Msa0615490:intron 40.0%
! GTTTGAGTTATCTGGGAAAG+AGG + chr4_2:64969723-64969742 None:intergenic 40.0%
! GGAGAACTGTTTGAGTTATC+TGG + chr4_2:64969731-64969750 None:intergenic 40.0%
AATTCCTAGGGATAAGACAC+AGG + chr4_2:64969872-64969891 None:intergenic 40.0%
CAAGTAGCATGAAAAAGGCA+AGG + chr4_2:64969977-64969996 None:intergenic 40.0%
ATTCCTTAACATGTGCCCTT+AGG - chr4_2:64970151-64970170 Msa0615490:intron 40.0%
TTCCTTAACATGTGCCCTTA+GGG - chr4_2:64970152-64970171 Msa0615490:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr4_2:64970169-64970188 None:intergenic 40.0%
!!! CAGTGCTGGTTTTCTAGATA+AGG - chr4_2:64970538-64970557 Msa0615490:intron 40.0%
! TGATAGTGAAGATGGTGACT+TGG - chr4_2:64970731-64970750 Msa0615490:intron 40.0%
! GATATACTGGCTATGGGAAA+TGG - chr4_2:64970847-64970866 Msa0615490:intron 40.0%
ACTCGCTGGATTGTATATCT+AGG + chr4_2:64971148-64971167 None:intergenic 40.0%
ACTTCATCCTAGTTTCGTCT+TGG + chr4_2:64971203-64971222 None:intergenic 40.0%
GTCAAAAAGCTCATCCCTAT+TGG - chr4_2:64971221-64971240 Msa0615490:intron 40.0%
! TAGTGTTGGAGAACTTAGGA+AGG - chr4_2:64971334-64971353 Msa0615490:intron 40.0%
! GGATATCCAACTTGCTTTCT+AGG - chr4_2:64971355-64971374 Msa0615490:intron 40.0%
! CTTGCTTTCTAGGCTTTATG+AGG - chr4_2:64971365-64971384 Msa0615490:intron 40.0%
ACTGGATGTGAGATTAAGTG+TGG - chr4_2:64971410-64971429 Msa0615490:intron 40.0%
CTGGATGTGAGATTAAGTGT+GGG - chr4_2:64971411-64971430 Msa0615490:intron 40.0%
GGAAAAGAGGAGAGATTTGA+AGG - chr4_2:64971624-64971643 Msa0615490:intron 40.0%
TGAAAACAGCGGATCTGAAA+AGG - chr4_2:64971647-64971666 Msa0615490:intron 40.0%
ATTCCTTGTTAACGGGGATA+CGG + chr4_2:64971775-64971794 None:intergenic 40.0%
TACAGCATTCCTTGTTAACG+GGG + chr4_2:64971781-64971800 None:intergenic 40.0%
!! ATTTGATTTGCAGGAGGAAG+TGG - chr4_2:64971953-64971972 Msa0615490:intron 40.0%
!! TTTGATTTGCAGGAGGAAGT+GGG - chr4_2:64971954-64971973 Msa0615490:intron 40.0%
CTTGTCTTTGTGAGAATTCC+TGG + chr4_2:64972066-64972085 None:intergenic 40.0%
CAGGAATTCTCACAAAGACA+AGG - chr4_2:64972064-64972083 Msa0615490:CDS 40.0%
AATTCTCACAAAGACAAGGG+TGG - chr4_2:64972068-64972087 Msa0615490:CDS 40.0%
TTCAAATGCAAATGAGCAGC+TGG - chr4_2:64972114-64972133 Msa0615490:CDS 40.0%
GAACGACAGAATACATAGGA+AGG + chr4_2:64972415-64972434 None:intergenic 40.0%
GCAAGAACGACAGAATACAT+AGG + chr4_2:64972419-64972438 None:intergenic 40.0%
GCAAAAACCAGCAGAAGTTT+CGG + chr4_2:64972599-64972618 None:intergenic 40.0%
!! TAAGCTTTGTTTAGGGCCTT+AGG + chr4_2:64972621-64972640 None:intergenic 40.0%
CAAGTTTCACTTGTTCAGCT+GGG + chr4_2:64972700-64972719 None:intergenic 40.0%
TCAAGTTTCACTTGTTCAGC+TGG + chr4_2:64972701-64972720 None:intergenic 40.0%
CGGGTTAAGTTTCGTGAATC+GGG + chr4_2:64966878-64966897 None:intergenic 45.0%
GTGAAAATTGCAGCGGATGA+CGG + chr4_2:64966999-64967018 None:intergenic 45.0%
ATTCGGTCGATAAGTTCAGC+GGG + chr4_2:64967171-64967190 None:intergenic 45.0%
! GATTCGGTCGATAAGTTCAG+CGG + chr4_2:64967172-64967191 None:intergenic 45.0%
! CATGTTTGAGACGAGCGATT+CGG + chr4_2:64967188-64967207 None:intergenic 45.0%
! ATCGGCGTTGGAAAAGAATC+TGG - chr4_2:64967366-64967385 Msa0615490:three_prime_UTR 45.0%
GATCAGGCTTTGCAAACACA+TGG - chr4_2:64967772-64967791 Msa0615490:intron 45.0%
ACATGGATTTCCTGTTCCAG+AGG - chr4_2:64967789-64967808 Msa0615490:intron 45.0%
! GTAATCATGTCGCTTGTCCA+AGG - chr4_2:64967835-64967854 Msa0615490:intron 45.0%
GCACTTACAGAGGATAACCT+TGG + chr4_2:64967855-64967874 None:intergenic 45.0%
!! ACGAAAAAGGGCACTTACAG+AGG + chr4_2:64967865-64967884 None:intergenic 45.0%
GTCAGATCTCAAGCATATCC+TGG + chr4_2:64968059-64968078 None:intergenic 45.0%
TGTAAAAGCAAGGGACGGAA+TGG + chr4_2:64968081-64968100 None:intergenic 45.0%
AAATATGTGGAAGGGAGTGG+TGG + chr4_2:64968424-64968443 None:intergenic 45.0%
ATTATTCGGCTGGCAGAACA+TGG - chr4_2:64968559-64968578 Msa0615490:intron 45.0%
TAATGCTGACAAGTGCACAC+AGG + chr4_2:64968636-64968655 None:intergenic 45.0%
CAAACATTAGACGGCACAGA+AGG + chr4_2:64969506-64969525 None:intergenic 45.0%
GTTATCTGGGAAAGAGGAGA+TGG + chr4_2:64969717-64969736 None:intergenic 45.0%
TAGTCCTGTGTCTTATCCCT+AGG - chr4_2:64969865-64969884 Msa0615490:intron 45.0%
! AATGCTAACTTGTGCCCTTG+AGG - chr4_2:64970021-64970040 Msa0615490:intron 45.0%
! ATGCTAACTTGTGCCCTTGA+GGG - chr4_2:64970022-64970041 Msa0615490:intron 45.0%
TCCTTAACATGTGCCCTCAA+GGG + chr4_2:64970038-64970057 None:intergenic 45.0%
TTCCTTAACATGTGCCCTCA+AGG + chr4_2:64970039-64970058 None:intergenic 45.0%
!! CCATGTTAACTTGTGCCCTA+AGG + chr4_2:64970170-64970189 None:intergenic 45.0%
CCTTAGGGCACAAGTTAACA+TGG - chr4_2:64970167-64970186 Msa0615490:intron 45.0%
CGATTCTAATGAAGGGAGAG+AGG - chr4_2:64970481-64970500 Msa0615490:intron 45.0%
TCTTCAATAGACAGCAGTGC+TGG - chr4_2:64970524-64970543 Msa0615490:intron 45.0%
!! GATAAGGAACTTGCTGCTAG+TGG - chr4_2:64970554-64970573 Msa0615490:intron 45.0%
TCTGCAGTTTATTGAAGGCG+AGG - chr4_2:64970689-64970708 Msa0615490:intron 45.0%
CAATCCAGCGAGTTAGTACA+AGG - chr4_2:64971155-64971174 Msa0615490:CDS 45.0%
TCATCCTAGTTTCGTCTTGG+AGG + chr4_2:64971200-64971219 None:intergenic 45.0%
CATGTCCCTCATCCTAAACA+TGG + chr4_2:64971596-64971615 None:intergenic 45.0%
GATGAGGGACATGAAAGTCA+TGG - chr4_2:64971603-64971622 Msa0615490:intron 45.0%
AAAGGAAGATGCAAGCGACA+CGG - chr4_2:64971665-64971684 Msa0615490:intron 45.0%
TTACCGTATCCCCGTTAACA+AGG - chr4_2:64971769-64971788 Msa0615490:intron 45.0%
TGCTATAGCATCAGCTCGTA+GGG - chr4_2:64972022-64972041 Msa0615490:CDS 45.0%
GAGCAGCTGGTGAGTTATAT+TGG - chr4_2:64972127-64972146 Msa0615490:CDS 45.0%
TGACATGAGGTCAATCGCAT+GGG + chr4_2:64972161-64972180 None:intergenic 45.0%
ATGACATGAGGTCAATCGCA+TGG + chr4_2:64972162-64972181 None:intergenic 45.0%
ATGTATGGAATGTCCTTCGG+AGG - chr4_2:64972311-64972330 Msa0615490:intron 45.0%
AAAACCAGCAGAAGTTTCGG+AGG + chr4_2:64972596-64972615 None:intergenic 45.0%
!!! CTTCTGCTGGTTTTTGCCTA+AGG - chr4_2:64972602-64972621 Msa0615490:CDS 45.0%
!! AAACTTAGGCAATTGGCTCG+CGG - chr4_2:64972640-64972659 Msa0615490:five_prime_UTR 45.0%
TGTTCAGCTGGGTTCACAAA+AGG + chr4_2:64972689-64972708 None:intergenic 45.0%
!! TTATATTTCATAATTTAATT+AGG + chr4_2:64968247-64968266 None:intergenic 5.0%
!!! TAATTTCTATTATTTTTATT+AGG - chr4_2:64971693-64971712 Msa0615490:intron 5.0%
GTTCTCACCGCCGTTGAATT+GGG - chr4_2:64967123-64967142 Msa0615490:three_prime_UTR 50.0%
TCTCATGCCCAATTCAACGG+CGG + chr4_2:64967133-64967152 None:intergenic 50.0%
TTCGGTCGATAAGTTCAGCG+GGG + chr4_2:64967170-64967189 None:intergenic 50.0%
CGAATCGCTCGTCTCAAACA+TGG - chr4_2:64967186-64967205 Msa0615490:three_prime_UTR 50.0%
ATCGCTCGTCTCAAACATGG+TGG - chr4_2:64967189-64967208 Msa0615490:three_prime_UTR 50.0%
CAAACATGGTGGCACCTACA+AGG - chr4_2:64967200-64967219 Msa0615490:three_prime_UTR 50.0%
GGATTTCGCCTTACCTACCT+TGG - chr4_2:64967279-64967298 Msa0615490:three_prime_UTR 50.0%
!! AAAGGTGTCTTCGTCTCCGT+TGG - chr4_2:64967336-64967355 Msa0615490:three_prime_UTR 50.0%
ATTTCCTGTTCCAGAGGCTG+TGG - chr4_2:64967795-64967814 Msa0615490:intron 50.0%
CGATTATGTTCCACAGCCTC+TGG + chr4_2:64967808-64967827 None:intergenic 50.0%
GTTCTGCAAATGCAGCGTTC+AGG - chr4_2:64968486-64968505 Msa0615490:intron 50.0%
GGAGTCAGATTGTAAGCCAG+AGG + chr4_2:64968715-64968734 None:intergenic 50.0%
TGCGACACAGACACCATTTG+CGG + chr4_2:64968785-64968804 None:intergenic 50.0%
AGAGGAGATGGAGGAAAGGA+GGG + chr4_2:64969705-64969724 None:intergenic 50.0%
AAGAGGAGATGGAGGAAAGG+AGG + chr4_2:64969706-64969725 None:intergenic 50.0%
GGAAAGAGGAGATGGAGGAA+AGG + chr4_2:64969709-64969728 None:intergenic 50.0%
ATCTGGGAAAGAGGAGATGG+AGG + chr4_2:64969714-64969733 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG + chr4_2:64970157-64970176 None:intergenic 50.0%
AATGAAGGGAGAGAGGAAGC+CGG - chr4_2:64970488-64970507 Msa0615490:intron 50.0%
!! GAACTTGCTGCTAGTGGCTT+TGG - chr4_2:64970560-64970579 Msa0615490:intron 50.0%
GCAGTTTATTGAAGGCGAGG+TGG - chr4_2:64970692-64970711 Msa0615490:intron 50.0%
GGCATCAGCAGTTTGCAGAA+AGG + chr4_2:64970998-64971017 None:intergenic 50.0%
GAGTTAGTACAAGGCCTCGA+TGG - chr4_2:64971164-64971183 Msa0615490:CDS 50.0%
TCCACCTCCAAGACGAAACT+AGG - chr4_2:64971193-64971212 Msa0615490:intron 50.0%
TCCTAGTTTCGTCTTGGAGG+TGG + chr4_2:64971197-64971216 None:intergenic 50.0%
CATATTCGGGTCACCGGATT+GGG + chr4_2:64971270-64971289 None:intergenic 50.0%
TCATATTCGGGTCACCGGAT+TGG + chr4_2:64971271-64971290 None:intergenic 50.0%
GTGCTATAGCATCAGCTCGT+AGG - chr4_2:64972021-64972040 Msa0615490:CDS 50.0%
GCTATAGCATCAGCTCGTAG+GGG - chr4_2:64972023-64972042 Msa0615490:CDS 50.0%
GACGGAAGAAACTTGGATCC+AGG - chr4_2:64972045-64972064 Msa0615490:CDS 50.0%
CTCACAAAGACAAGGGTGGT+AGG - chr4_2:64972072-64972091 Msa0615490:CDS 50.0%
TGCAGCTTTCATACCTCCGA+AGG + chr4_2:64972327-64972346 None:intergenic 50.0%
TGTTCCTCCGAAACTTCTGC+TGG - chr4_2:64972589-64972608 Msa0615490:CDS 50.0%
GAAGCGGTGGTGTAAGTCGT+CGG + chr4_2:64966971-64966990 None:intergenic 55.0%
!! ATTGCAGCGGATGACGGAGA+AGG + chr4_2:64966993-64967012 None:intergenic 55.0%
GGTTCTCACCGCCGTTGAAT+TGG - chr4_2:64967122-64967141 Msa0615490:three_prime_UTR 55.0%
GTTCAGCGGGGACAATTTCG+TGG + chr4_2:64967158-64967177 None:intergenic 55.0%
GTCTCCGTTGGTCGCCAAAT+CGG - chr4_2:64967348-64967367 Msa0615490:three_prime_UTR 55.0%
!! AACGCCGATTTGGCGACCAA+CGG + chr4_2:64967355-64967374 None:intergenic 55.0%
CTCACGTGAGGGTCATACAC+TGG + chr4_2:64967431-64967450 None:intergenic 55.0%
ATGACACGACGCTCACGTGA+GGG + chr4_2:64967442-64967461 None:intergenic 55.0%
AATGACACGACGCTCACGTG+AGG + chr4_2:64967443-64967462 None:intergenic 55.0%
!! TGTTCCACAGCCTCTGGAAC+AGG + chr4_2:64967802-64967821 None:intergenic 55.0%
! GCCCTTGAGGGCACATGTTA+AGG - chr4_2:64970034-64970053 Msa0615490:intron 55.0%
! GAGGCCTTGTACTAACTCGC+TGG + chr4_2:64971162-64971181 None:intergenic 55.0%
!! GAGGTGGAAGAGTACCATCG+AGG + chr4_2:64971181-64971200 None:intergenic 55.0%
CCGTGTCATATTCGGGTCAC+CGG + chr4_2:64971276-64971295 None:intergenic 55.0%
CCGGTGACCCGAATATGACA+CGG - chr4_2:64971273-64971292 Msa0615490:intron 55.0%
TAGCATCAGCTCGTAGGGGA+CGG - chr4_2:64972027-64972046 Msa0615490:CDS 55.0%
CGTAGGGGACGGAAGAAACT+TGG - chr4_2:64972038-64972057 Msa0615490:CDS 55.0%
CGGTGGTGTAAGTCGTCGGA+CGG + chr4_2:64966967-64966986 None:intergenic 60.0%
!! GATGACGGAGAAGGAAGCGG+TGG + chr4_2:64966984-64967003 None:intergenic 60.0%
!! GCGGATGACGGAGAAGGAAG+CGG + chr4_2:64966987-64967006 None:intergenic 60.0%
GTTGGTCGCCAAATCGGCGT+TGG - chr4_2:64967354-64967373 Msa0615490:three_prime_UTR 60.0%
GTGTAAGTCGTCGGACGGCG+AGG + chr4_2:64966962-64966981 None:intergenic 65.0%
AGTCGTCGGACGGCGAGGAC+TGG + chr4_2:64966957-64966976 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 64966875 64972826 64966875 ID=Msa0615490;Name=Msa0615490
chr4_2 mRNA 64966875 64972826 64966875 ID=Msa0615490-mRNA-1;Parent=Msa0615490;Name=Msa0615490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=197|1|1|1|1|1|10|687|454
chr4_2 exon 64966875 64967735 64966875 ID=Msa0615490-mRNA-1:exon:18307;Parent=Msa0615490-mRNA-1
chr4_2 exon 64968015 64968098 64968015 ID=Msa0615490-mRNA-1:exon:18306;Parent=Msa0615490-mRNA-1
chr4_2 exon 64968889 64969005 64968889 ID=Msa0615490-mRNA-1:exon:18305;Parent=Msa0615490-mRNA-1
chr4_2 exon 64969091 64969259 64969091 ID=Msa0615490-mRNA-1:exon:18304;Parent=Msa0615490-mRNA-1
chr4_2 exon 64970408 64970455 64970408 ID=Msa0615490-mRNA-1:exon:18303;Parent=Msa0615490-mRNA-1
chr4_2 exon 64970882 64970955 64970882 ID=Msa0615490-mRNA-1:exon:18302;Parent=Msa0615490-mRNA-1
chr4_2 exon 64971083 64971200 64971083 ID=Msa0615490-mRNA-1:exon:18301;Parent=Msa0615490-mRNA-1
chr4_2 exon 64971835 64971923 64971835 ID=Msa0615490-mRNA-1:exon:18300;Parent=Msa0615490-mRNA-1
chr4_2 exon 64972006 64972181 64972006 ID=Msa0615490-mRNA-1:exon:18299;Parent=Msa0615490-mRNA-1
chr4_2 exon 64972314 64972826 64972314 ID=Msa0615490-mRNA-1:exon:18298;Parent=Msa0615490-mRNA-1
chr4_2 five_prime_UTR 64972630 64972826 64972630 ID=Msa0615490-mRNA-1:five_prime_utr;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64972314 64972629 64972314 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64972006 64972181 64972006 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64971835 64971923 64971835 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64971083 64971200 64971083 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64970882 64970955 64970882 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64970408 64970455 64970408 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64969091 64969259 64969091 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64968889 64969005 64968889 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64968015 64968098 64968015 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 CDS 64967562 64967735 64967562 ID=Msa0615490-mRNA-1:cds;Parent=Msa0615490-mRNA-1
chr4_2 three_prime_UTR 64966875 64967561 64966875 ID=Msa0615490-mRNA-1:three_prime_utr;Parent=Msa0615490-mRNA-1
Gene Sequence

>Msa0615490

ATGAAGCTCGACGTAGATGTTTTGAGATACCTCTCGAAAGATGATTTTAGGGTTCTCACCGCCGTTGAATTGGGCATGAGAAACCACGAAATTGTCCCCGCTGAACTTATCGACCGAATCGCTCGTCTCAAACATGGTGGCACCTACAAGGTTCTGAAAAACTTGCTTAAACACAAGCTGTTGCATCACGACTCTACTAAATACGATGGATTTCGCCTTACCTACCTTGGTTATGATTTTCTTGCCATCAAAACTATGGTCAATAAAGGTGTCTTCGTCTCCGTTGGTCGCCAAATCGGCGTTGGAAAAGAATCTGATATATTTGAGGTTGCTGATGAAGATGGAAAAATTATGGCTATGAAGTTACATAGGCTTGGTAGAGTTTCTTTTAGAGCTGTTAAATCCAAGCGTGACTACTTAAAACATCGTAGTAGTTATAATTGGCTCTATTTATCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGGCTTTGCAAACACATGGATTTCCTGTTCCAGAGGCTGTGGAACATAATCGACATTGTGTAATCATGTCGCTTGTCCAAGGTTATCCTCTCGTTCAGGTGAAGCAGTTACAAAACCCAGAGACAGTTTTTGAGACAATTGTTGGTATAATTATTCGGCTGGCAGAACATGGTCTCATTCATTGTGATTTCAATGAATTTAACATCATGATTGACGATGAAGAAAAAATTACTGTGATTGATTTTCCGCAAATGGTGTCTGTGTCGCACCGTAATGCAAAGATGTACTTTGATCGTGATGTTGAATGTATCTTCAAGTTTTTCAGAAAGAGGTTCAATATGACTTTTCAAGAAAGCATAGATGATAACGACGATTCTAATGAAGGGAGAGAGGAAGCCGGAAAACTCTGTTTTTCTTCAATAGACAGCAGTGCTGGTTTTCTAGATAAGGAACTTGCTGCTAGTGGCTTTGGTAAAAAAGATGAGGAAGATATTCAAAGGTTTATTGAAGGCGAGGTGGAGAGTGATACAAATTCTGATAGTGAAGATGGTGACTTGGTGAGAAATCTGAATGAAGCAGACGATTTAAATGTTGATTCTTTACATTTGTCAGAGCAGGATGAGGGACATGAAAGTCATGGAAAAGAGGAGAGATTTGAAGGTGAAAACAGCGGATCTGAAAAGGAAGATGCAAGCGACACGGAGGAAGTGGGAATTGAAGCTGAACTCACAAAGAGCTTGAGTAAGCAAAGACAAAGTGCTATAGCATCAGCTCGTAGGGGACGGAAGAAACTTGGATCCAGGAATTCTCACAAAGACAAGGGTGGTAGGTCATCTCAAAATGCTAAGGTTCAAATGCAAATGAGCAGCTGGTGA

Protein sequence

>Msa0615490

MKLDVDVLRYLSKDDFRVLTAVELGMRNHEIVPAELIDRIARLKHGGTYKVLKNLLKHKLLHHDSTKYDGFRLTYLGYDFLAIKTMVNKGVFVSVGRQIGVGKESDIFEVADEDGKIMAMKLHRLGRVSFRAVKSKRDYLKHRSSYNWLYLSRLAALKEFAFMKALQTHGFPVPEAVEHNRHCVIMSLVQGYPLVQVKQLQNPETVFETIVGIIIRLAEHGLIHCDFNEFNIMIDDEEKITVIDFPQMVSVSHRNAKMYFDRDVECIFKFFRKRFNMTFQESIDDNDDSNEGREEAGKLCFSSIDSSAGFLDKELAASGFGKKDEEDIQRFIEGEVESDTNSDSEDGDLVRNLNEADDLNVDSLHLSEQDEGHESHGKEERFEGENSGSEKEDASDTEEVGIEAELTKSLSKQRQSAIASARRGRKKLGSRNSHKDKGGRSSQNAKVQMQMSSW*