AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231980 MtrunA17_Chr2g0278661 97.710 131 3 0 1 131 1 131 7.54e-90 265
Msa0231980 MtrunA17_Chr4g0050781 69.767 129 34 2 1 128 1 125 2.09e-49 161
Msa0231980 MtrunA17_Chr4g0035001 59.494 79 32 0 6 84 5 83 1.08e-30 111
Msa0231980 MtrunA17_Chr4g0035051 56.962 79 34 0 6 84 7 85 4.63e-30 108
Msa0231980 MtrunA17_Chr4g0035031 56.250 80 35 0 6 85 7 86 5.47e-28 105
Msa0231980 MtrunA17_Chr1g0210241 46.392 97 51 1 1 96 1 97 1.24e-23 95.9
Msa0231980 MtrunA17_Chr7g0266751 46.988 83 44 0 7 89 32 114 1.52e-22 89.7
Msa0231980 MtrunA17_Chr3g0086861 42.857 84 48 0 1 84 38 121 4.98e-19 85.1
Msa0231980 MtrunA17_Chr3g0121631 49.351 77 38 1 8 84 37 112 7.33e-19 80.1
Msa0231980 MtrunA17_Chr7g0263001 47.561 82 43 0 8 89 36 117 7.74e-19 80.1
Msa0231980 MtrunA17_Chr7g0219021 46.053 76 41 0 8 83 41 116 1.33e-18 82.0
Msa0231980 MtrunA17_Chr4g0061451 44.156 77 43 0 8 84 43 119 1.48e-18 82.0
Msa0231980 MtrunA17_Chr3g0119311 45.122 82 43 1 8 87 37 118 2.03e-18 78.6
Msa0231980 MtrunA17_Chr3g0116631 45.783 83 45 0 7 89 206 288 4.75e-18 81.3
Msa0231980 MtrunA17_Chr3g0116631 36.905 84 53 0 8 91 110 193 4.98e-12 64.3
Msa0231980 MtrunA17_Chr6g0481071 39.773 88 48 1 8 90 96 183 3.84e-17 76.6
Msa0231980 MtrunA17_Chr1g0168601 40.506 79 47 0 6 84 152 230 7.35e-17 77.0
Msa0231980 MtrunA17_Chr3g0088511 39.759 83 50 0 8 90 33 115 4.16e-16 72.4
Msa0231980 MtrunA17_Chr8g0346011 43.421 76 42 1 1 76 31 105 4.80e-16 75.5
Msa0231980 MtrunA17_Chr7g0276531 48.611 72 33 1 3 70 14 85 6.54e-16 74.7
Msa0231980 MtrunA17_Chr1g0181111 44.318 88 48 1 2 89 192 278 1.26e-15 74.3
Msa0231980 MtrunA17_Chr1g0181111 38.318 107 66 0 8 114 85 191 1.98e-13 68.2
Msa0231980 MtrunA17_Chr7g0267571 40.789 76 45 0 8 83 213 288 1.28e-15 74.7
Msa0231980 MtrunA17_Chr1g0198431 39.326 89 54 0 8 96 193 281 1.81e-15 73.9
Msa0231980 MtrunA17_Chr4g0017401 39.423 104 58 3 3 103 12 113 2.13e-15 73.6
Msa0231980 MtrunA17_Chr3g0144311 41.975 81 46 1 3 83 25 104 5.01e-15 72.8
Msa0231980 MtrunA17_Chr3g0101061 41.584 101 47 4 3 99 36 128 5.84e-15 73.6
Msa0231980 MtrunA17_Chr4g0058151 40.244 82 49 0 8 89 217 298 1.69e-14 71.2
Msa0231980 MtrunA17_Chr4g0058151 37.647 85 53 0 4 88 119 203 9.75e-14 69.3
Msa0231980 MtrunA17_Chr2g0290191 41.573 89 47 2 5 93 2 85 1.86e-14 72.0
Msa0231980 MtrunA17_Chr4g0031091 37.662 77 48 0 8 84 34 110 1.94e-14 67.4
Msa0231980 MtrunA17_Chr5g0426311 41.892 74 42 1 3 76 12 84 4.81e-14 69.7
Msa0231980 MtrunA17_Chr1g0177101 39.024 82 46 1 8 85 208 289 5.68e-14 70.1
Msa0231980 MtrunA17_Chr7g0219031 41.270 63 37 0 8 70 41 103 8.65e-14 65.9
Msa0231980 MtrunA17_Chr2g0327921 35.802 81 52 0 8 88 8 88 9.60e-14 65.1
Msa0231980 MtrunA17_Chr4g0042161 41.558 77 45 0 10 86 54 130 1.42e-13 65.9
Msa0231980 MtrunA17_Chr1g0186351 38.272 81 48 1 3 83 2 80 2.48e-13 68.9
Msa0231980 MtrunA17_Chr1g0186351 35.443 79 50 1 8 86 113 190 6.35e-11 61.6
Msa0231980 MtrunA17_Chr5g0447761 37.778 90 51 2 4 93 3 87 2.80e-13 68.6
Msa0231980 MtrunA17_Chr3g0127751 34.906 106 65 2 3 108 22 123 4.72e-13 66.6
Msa0231980 MtrunA17_Chr7g0268551 40.244 82 44 1 10 91 351 427 6.63e-13 67.4
Msa0231980 MtrunA17_Chr3g0120721 37.500 88 52 1 2 86 98 185 2.65e-12 65.5
Msa0231980 MtrunA17_Chr6g0449481 32.381 105 70 1 8 112 134 237 5.81e-12 64.7
Msa0231980 MtrunA17_Chr4g0018581 40.741 81 48 0 3 83 447 527 6.29e-12 64.7
Msa0231980 MtrunA17_Chr4g0065741 33.735 83 55 0 8 90 72 154 1.61e-11 60.8
Msa0231980 MtrunA17_Chr3g0110211 44.156 77 42 1 8 83 113 189 1.89e-11 63.2
Msa0231980 MtrunA17_Chr4g0042151 31.313 99 68 0 10 108 47 145 4.76e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231980 AT3G26420.1 70.455 132 29 3 1 128 1 126 1.42e-49 163
Msa0231980 AT2G21660.2 62.025 79 30 0 6 84 7 85 3.19e-31 113
Msa0231980 AT2G21660.1 62.025 79 30 0 6 84 7 85 5.08e-31 113
Msa0231980 AT4G39260.3 57.831 83 35 0 6 88 5 87 8.02e-31 110
Msa0231980 AT4G39260.2 58.228 79 33 0 6 84 5 83 7.10e-29 105
Msa0231980 AT4G39260.1 58.228 79 33 0 6 84 5 83 2.33e-28 105
Msa0231980 AT4G13850.4 51.852 81 39 0 8 88 36 116 2.84e-22 89.0
Msa0231980 AT4G13850.3 51.190 84 39 1 8 89 36 119 3.52e-22 89.4
Msa0231980 AT4G13850.2 51.190 84 39 1 8 89 36 119 4.43e-22 89.4
Msa0231980 AT4G13850.1 51.190 84 39 1 8 89 36 119 5.03e-22 89.4
Msa0231980 AT4G39260.4 56.250 64 28 0 6 69 5 68 1.78e-21 86.3
Msa0231980 AT1G60650.2 37.008 127 62 2 6 128 11 123 3.44e-20 87.4
Msa0231980 AT1G60650.1 37.008 127 62 2 6 128 11 123 3.44e-20 87.4
Msa0231980 AT5G04280.1 44.792 96 52 1 8 102 8 103 5.86e-20 87.0
Msa0231980 AT4G24770.1 46.988 83 44 0 7 89 244 326 2.08e-19 85.9
Msa0231980 AT4G24770.1 39.773 88 53 0 4 91 147 234 1.53e-14 72.0
Msa0231980 AT4G24770.2 46.988 83 44 0 7 89 244 326 2.08e-19 85.9
Msa0231980 AT4G24770.2 39.773 88 53 0 4 91 147 234 1.53e-14 72.0
Msa0231980 AT3G23830.2 45.679 81 44 0 8 88 36 116 2.97e-19 81.3
Msa0231980 AT3G23830.1 45.679 81 44 0 8 88 36 116 2.97e-19 81.3
Msa0231980 AT5G61030.2 49.351 77 39 0 8 84 41 117 7.43e-19 84.0
Msa0231980 AT5G61030.1 49.351 77 39 0 8 84 41 117 7.43e-19 84.0
Msa0231980 AT5G06210.1 46.914 81 43 0 8 88 35 115 1.05e-18 80.1
Msa0231980 AT2G37220.1 45.122 82 45 0 8 89 205 286 1.09e-18 83.2
Msa0231980 AT2G37220.1 37.209 86 54 0 6 91 90 175 4.29e-13 67.8
Msa0231980 AT3G53460.1 45.122 82 45 0 8 89 258 339 1.61e-18 83.6
Msa0231980 AT3G53460.3 45.122 82 45 0 8 89 258 339 1.61e-18 83.6
Msa0231980 AT3G53460.2 45.122 82 45 0 8 89 258 339 1.61e-18 83.6
Msa0231980 AT3G53460.4 45.122 82 45 0 8 89 279 360 1.77e-18 83.6
Msa0231980 AT5G59865.1 44.706 85 47 0 10 94 29 113 9.04e-18 76.6
Msa0231980 AT1G18630.1 51.316 76 37 0 8 83 37 112 1.66e-17 77.0
Msa0231980 AT1G76460.1 45.679 81 43 1 3 83 20 99 7.37e-17 78.2
Msa0231980 AT1G33470.3 53.125 64 30 0 1 64 1 64 1.75e-16 76.3
Msa0231980 AT1G33470.1 53.125 64 30 0 1 64 1 64 1.84e-16 76.3
Msa0231980 AT1G33470.2 53.125 64 30 0 1 64 1 64 1.89e-16 76.3
Msa0231980 AT1G60000.1 44.304 79 44 0 6 84 176 254 3.71e-16 75.9
Msa0231980 AT2G46780.1 38.679 106 56 2 2 99 17 121 5.16e-16 76.3
Msa0231980 AT2G46780.2 38.679 106 56 2 2 99 17 121 5.16e-16 76.3
Msa0231980 AT1G74230.1 47.368 76 39 1 8 83 35 109 8.30e-16 75.1
Msa0231980 AT4G13860.1 42.466 73 42 0 8 80 4 76 9.83e-16 70.5
Msa0231980 AT5G47320.1 44.156 77 43 0 8 84 32 108 1.59e-15 73.2
Msa0231980 AT4G26650.2 44.330 97 46 3 2 95 7 98 2.36e-15 75.1
Msa0231980 AT5G50250.1 42.169 83 48 0 7 89 207 289 2.50e-15 73.9
Msa0231980 AT5G50250.1 35.632 87 56 0 5 91 111 197 6.47e-13 67.0
Msa0231980 AT4G26650.1 44.330 97 46 3 2 95 10 101 2.51e-15 75.1
Msa0231980 AT2G37510.1 48.649 74 38 0 8 81 35 108 2.51e-15 70.9
Msa0231980 AT3G08000.1 46.053 76 41 0 8 83 42 117 2.71e-15 70.9
Msa0231980 AT1G22910.2 39.216 102 59 2 1 100 7 107 3.24e-15 72.8
Msa0231980 AT1G73530.1 31.731 104 68 1 8 111 78 178 3.90e-15 71.6
Msa0231980 AT1G22910.1 39.216 102 59 2 1 100 7 107 4.68e-15 72.8
Msa0231980 AT1G20880.2 44.444 81 44 1 3 83 20 99 4.95e-15 72.8
Msa0231980 AT1G20880.3 44.444 81 44 1 3 83 20 99 4.95e-15 72.8
Msa0231980 AT1G20880.1 44.444 81 44 1 3 83 20 99 4.95e-15 72.8
Msa0231980 AT3G07810.1 40.000 90 49 2 4 93 3 87 1.47e-14 72.8
Msa0231980 AT1G22910.3 39.216 102 59 2 1 100 7 107 1.59e-14 72.4
Msa0231980 AT3G07810.2 40.000 90 49 2 4 93 3 87 1.62e-14 72.8
Msa0231980 AT3G13224.3 38.000 100 59 1 8 104 101 200 1.90e-14 72.0
Msa0231980 AT5G55550.5 43.820 89 45 2 3 91 2 85 1.90e-14 72.4
Msa0231980 AT5G55550.4 43.820 89 45 2 3 91 2 85 1.90e-14 72.4
Msa0231980 AT5G55550.9 43.820 89 45 2 3 91 2 85 1.90e-14 72.4
Msa0231980 AT5G55550.7 43.820 89 45 2 3 91 2 85 1.90e-14 72.4
Msa0231980 AT5G55550.1 43.820 89 45 2 3 91 2 85 1.90e-14 72.4
Msa0231980 AT2G27330.1 32.258 93 63 0 10 102 24 116 2.01e-14 67.8
Msa0231980 AT5G55550.2 43.820 89 45 2 3 91 2 85 2.30e-14 72.0
Msa0231980 AT5G55550.3 43.820 89 45 2 3 91 2 85 2.30e-14 72.0
Msa0231980 AT5G55550.6 43.820 89 45 2 3 91 2 85 2.30e-14 72.0
Msa0231980 AT5G55550.11 43.820 89 45 2 3 91 2 85 2.30e-14 72.0
Msa0231980 AT3G13224.2 38.000 100 59 1 8 104 110 209 3.71e-14 71.2
Msa0231980 AT3G20930.1 40.476 84 50 0 8 91 283 366 5.66e-14 70.9
Msa0231980 AT1G22330.1 39.189 74 44 1 3 76 13 85 1.01e-13 69.3
Msa0231980 AT1G78260.1 39.189 74 44 1 3 76 13 85 1.67e-13 68.9
Msa0231980 AT5G47620.1 41.176 85 45 2 8 92 7 86 2.22e-13 69.3
Msa0231980 AT5G47620.2 41.176 85 45 2 8 92 7 86 2.22e-13 69.3
Msa0231980 AT5G47620.5 41.176 85 45 2 8 92 7 86 2.22e-13 69.3
Msa0231980 AT3G52380.1 36.842 76 48 0 8 83 220 295 2.56e-13 68.6
Msa0231980 AT3G52380.1 33.058 121 69 3 5 118 114 229 3.21e-11 62.4
Msa0231980 AT3G54770.3 41.975 81 46 1 3 83 13 92 3.08e-13 67.8
Msa0231980 AT3G54770.1 41.975 81 46 1 3 83 13 92 3.40e-13 67.8
Msa0231980 AT4G14300.1 37.037 81 49 1 3 83 2 80 3.65e-13 68.6
Msa0231980 AT4G14300.2 37.037 81 49 1 3 83 2 80 3.65e-13 68.6
Msa0231980 AT1G78260.2 39.189 74 44 1 3 76 13 85 4.40e-13 67.4
Msa0231980 AT2G21690.1 39.130 69 42 0 1 69 1 69 7.80e-13 63.5
Msa0231980 AT5G19030.1 40.000 80 48 0 10 89 80 159 1.02e-12 64.7
Msa0231980 AT5G53720.1 41.176 85 47 2 1 83 1 84 1.26e-12 62.8
Msa0231980 AT5G55550.8 43.421 76 41 1 3 78 2 75 1.56e-12 67.0
Msa0231980 AT5G55550.10 43.421 76 41 1 3 78 2 75 1.94e-12 66.6
Msa0231980 AT5G40490.2 35.443 79 51 0 8 86 114 192 4.70e-12 65.5
Msa0231980 AT5G11412.1 37.838 74 45 1 3 76 48 120 4.94e-12 62.8
Msa0231980 AT3G20930.2 38.202 89 50 1 8 91 283 371 7.44e-12 64.7
Msa0231980 AT5G40490.1 35.443 79 51 0 8 86 131 209 7.47e-12 64.7
Msa0231980 AT5G47620.4 43.077 65 37 0 8 72 7 71 9.31e-12 64.3
Msa0231980 AT3G13224.1 40.000 75 45 0 8 82 110 184 9.35e-12 63.2
Msa0231980 AT5G54580.1 34.906 106 61 2 10 115 59 156 9.56e-12 61.6
Msa0231980 AT1G54080.1 34.021 97 63 1 4 100 145 240 1.16e-11 64.3
Msa0231980 AT1G03457.3 38.889 72 44 0 10 81 228 299 1.28e-11 63.5
Msa0231980 AT1G03457.2 38.889 72 44 0 10 81 342 413 1.49e-11 63.9
Msa0231980 AT1G03457.1 38.889 72 44 0 10 81 333 404 1.66e-11 63.5
Msa0231980 AT3G06970.1 37.805 82 50 1 2 83 7 87 1.72e-11 63.2
Msa0231980 AT4G13860.2 44.828 58 32 0 23 80 2 59 1.80e-11 58.5
Msa0231980 AT4G34110.1 39.080 87 52 1 10 96 218 303 2.15e-11 63.5
Msa0231980 AT5G51300.1 39.474 76 46 0 5 80 478 553 2.82e-11 63.2
Msa0231980 AT5G51300.2 39.474 76 46 0 5 80 478 553 2.82e-11 63.2
Msa0231980 AT5G51300.3 39.474 76 46 0 5 80 478 553 2.82e-11 63.2
Msa0231980 AT5G04280.3 49.231 65 32 1 39 102 1 65 3.03e-11 62.4
Msa0231980 AT5G04280.4 49.231 65 32 1 39 102 1 65 3.03e-11 62.4
Msa0231980 AT5G04280.5 49.231 65 32 1 39 102 1 65 3.03e-11 62.4
Msa0231980 AT5G04280.2 49.231 65 32 1 39 102 1 65 3.03e-11 62.4
Msa0231980 AT3G46020.1 33.766 77 51 0 8 84 8 84 3.38e-11 58.9
Msa0231980 AT2G22100.1 37.209 86 53 1 3 88 159 243 3.48e-11 62.8
Msa0231980 AT1G17640.2 34.118 85 54 1 8 92 67 149 8.31e-11 61.6
Msa0231980 AT1G17640.1 34.118 85 54 1 8 92 67 149 8.31e-11 61.6
Msa0231980 AT1G17640.3 34.118 85 54 1 8 92 67 149 8.31e-11 61.6
Msa0231980 AT3G52150.2 40.260 77 46 0 7 83 177 253 9.94e-11 60.5
Msa0231980 AT3G52150.1 40.260 77 46 0 7 83 177 253 9.94e-11 60.5

Find 108 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGGCGTTCTCGTGGTTT+TGG 0.181319 2_2:+4314831 Msa0231980:CDS
CGCAATCGTAGCCGAGATTA+TGG 0.231031 2_2:+4315014 Msa0231980:CDS
GGTGGGCGCGACAGGGATTC+TGG 0.257534 2_2:+4315199 Msa0231980:CDS
GGGATGGTGGTGGGCGTGAC+AGG 0.302789 2_2:+4315317 Msa0231980:CDS
GGGATGGCGGTGGGCGTGAC+AGG 0.307692 2_2:+4315296 Msa0231980:CDS
GCTCTTATGGTGGGCGCGAC+AGG 0.315939 2_2:+4315191 Msa0231980:CDS
CCTCCTCTTTCTCCTTCACT+AGG 0.321904 2_2:-4315106 None:intergenic
GTGGTGGTTGACAAATTCTC+TGG 0.342986 2_2:+4314813 Msa0231980:CDS
GGGATGGTGGTGGTCGTGAT+AGG 0.344211 2_2:+4315233 Msa0231980:CDS
GGGATGGCGGTGGTCGTGAT+AGG 0.344211 2_2:+4315254 Msa0231980:CDS
CCGTATGAGCGTCGTGGATC+TGG 0.346433 2_2:+4315358 Msa0231980:CDS
ATCTCTAGATCCTTGTGGTT+GGG 0.361996 2_2:-4314949 None:intergenic
GAGCGATCTGCATTCCTATC+AGG 0.364268 2_2:-4315172 None:intergenic
GATGAGTTTCGTTGCTTCAT+TGG 0.366302 2_2:+4314022 Msa0231980:CDS
ACCTAAGAGTACTGAGTAGA+TGG 0.378475 2_2:-4313281 None:intergenic
GCTTGAGCTTGAGCTTGTTC+CGG 0.385369 2_2:-4313245 None:intergenic
GGGCGTGACAGGGATGGTGG+TGG 0.385485 2_2:+4315307 Msa0231980:CDS
AGGAATGCAGATCGCTCTTA+TGG 0.388029 2_2:+4315178 Msa0231980:CDS
TACATAGACATATTAGTTGC+TGG 0.388090 2_2:+4315732 Msa0231980:three_prime_UTR
TCCATCTACTCAGTACTCTT+AGG 0.393269 2_2:+4313280 Msa0231980:five_prime_UTR
GGAGAAAGAGGAGGAAGGTA+TGG 0.416433 2_2:+4315115 Msa0231980:CDS
GGGATTCTGGTGGTCGTGAC+AGG 0.420547 2_2:+4315212 Msa0231980:CDS
ATGCTATCATTATTTACTGC+TGG 0.428403 2_2:+4315703 Msa0231980:three_prime_UTR
GGGATGGCGGTGGACGTGAC+AGG 0.434655 2_2:+4315275 Msa0231980:CDS
GGAGGTAGTCGAGGGTCTAA+TGG 0.442975 2_2:+4315035 Msa0231980:CDS
GGTGGGCGTGACAGGGATGG+TGG 0.446830 2_2:+4315304 Msa0231980:CDS
CTGAAACAGGCGCGCGCGAC+CGG 0.453707 2_2:+4313226 Msa0231980:five_prime_UTR
AGAGAGGCGGAATCTGAAAC+AGG 0.470762 2_2:+4313213 Msa0231980:five_prime_UTR
GTGAGTCACGACCACGTTCT+CGG 0.471685 2_2:-4314986 None:intergenic
TGAATGGTTACATAAGTTGC+TGG 0.476266 2_2:+4315800 Msa0231980:three_prime_UTR
AAAGATGCATTTGAAAAGTA+CGG 0.478989 2_2:+4314079 Msa0231980:CDS
GGCAGAGAAAGTAGATATAG+TGG 0.479639 2_2:+4315139 Msa0231980:CDS
GGACGTGACAGGGATGGCGG+TGG 0.479797 2_2:+4315286 Msa0231980:CDS
ATGCTTTAAGTGTGGTAAAC+CGG 0.481209 2_2:+4315064 Msa0231980:CDS
CATCTCTAGATCCTTGTGGT+TGG 0.481683 2_2:-4314950 None:intergenic
CTCCTCTTTCTCCTTCACTA+GGG 0.489943 2_2:-4315105 None:intergenic
GGCGTGACAGGGATGGTGGT+GGG 0.492470 2_2:+4315308 Msa0231980:CDS
CTCTTATGGTGGGCGCGACA+GGG 0.500774 2_2:+4315192 Msa0231980:CDS
GAGTTTCGTTGCTTCATTGG+TGG 0.502387 2_2:+4314025 Msa0231980:CDS
TGCCCTAGTGAAGGAGAAAG+AGG 0.503529 2_2:+4315103 Msa0231980:CDS
GAAAGAGGAGGAAGGTATGG+TGG 0.504556 2_2:+4315118 Msa0231980:CDS
GGATGGCGGTGGTCGTGATA+GGG 0.515261 2_2:+4315255 Msa0231980:CDS
AGTAGATATAGTGGTGGCTA+TGG 0.515924 2_2:+4315148 Msa0231980:CDS
GGCTATGAATGGAATTGACT+TGG 0.522243 2_2:+4314899 Msa0231980:CDS
AAATTCTCTGGGCGTTCTCG+TGG 0.522551 2_2:+4314825 Msa0231980:CDS
GGATGGTGGTGGTCGTGATA+GGG 0.522834 2_2:+4315234 Msa0231980:CDS
GGTCGTGACAGGGATGGTGG+TGG 0.527932 2_2:+4315223 Msa0231980:CDS
GCTTCATTGGTGGCCTTGCA+TGG 0.529203 2_2:+4314035 Msa0231980:CDS
GAGGCTATTGAGGCTATGAA+TGG 0.532703 2_2:+4314888 Msa0231980:CDS
GGCGGTGGGCGTGACAGGGA+TGG 0.543513 2_2:+4315301 Msa0231980:CDS
TTGTGTGTAGTTTCAAATGT+CGG 0.544631 2_2:+4313994 Msa0231980:intron
ATTAGTGACTCGTGCATGAA+TGG 0.545167 2_2:+4315784 Msa0231980:three_prime_UTR
CGGCAAGCTTGTTGAGGCAA+AGG 0.545418 2_2:+4314099 Msa0231980:CDS
GGATGGTGGTGGGCGTGACA+GGG 0.545644 2_2:+4315318 Msa0231980:CDS
CTCGACTACCTCCATAATCT+CGG 0.546127 2_2:-4315025 None:intergenic
AGCAATGGAAGAGGCTATTG+AGG 0.547802 2_2:+4314878 Msa0231980:CDS
ATTTGATGACAAGGAAGCAA+TGG 0.550117 2_2:+4314863 Msa0231980:CDS
GGATGGCGGTGGGCGTGACA+GGG 0.550547 2_2:+4315297 Msa0231980:CDS
TATCAGAAGTTGACCATGCA+AGG 0.550661 2_2:-4314048 None:intergenic
GCACTCCCTTGCAAAATGAC+CGG 0.556034 2_2:-4315083 None:intergenic
GTAGTTTCAAATGTCGGATA+CGG 0.558465 2_2:+4314000 Msa0231980:intron
CCAGATCCACGACGCTCATA+CGG 0.559082 2_2:-4315358 None:intergenic
GTTGCTGGATTTACAGCAGT+GGG 0.561015 2_2:+4315747 Msa0231980:three_prime_UTR
ATTTCAATAGAGCTAACGAT+TGG 0.562109 2_2:-4315637 None:intergenic
GTGGTGGCTATGGTCCTGAT+AGG 0.564092 2_2:+4315158 Msa0231980:CDS
GGATGGCGGTGGACGTGACA+GGG 0.565962 2_2:+4315276 Msa0231980:CDS
GACAGGGATCGCGATCGTGC+GGG 0.566766 2_2:+4315334 Msa0231980:CDS
GGCGGTGGACGTGACAGGGA+TGG 0.569612 2_2:+4315280 Msa0231980:CDS
TGACAGGGATCGCGATCGTG+CGG 0.569790 2_2:+4315333 Msa0231980:CDS
GCAAGGGAGTGCCCTAGTGA+AGG 0.574118 2_2:+4315094 Msa0231980:CDS
TGATACCTCTAGCTTCATTG+AGG 0.576981 2_2:+4315391 Msa0231980:CDS
GACGTGACAGGGATGGCGGT+GGG 0.581614 2_2:+4315287 Msa0231980:CDS
CGAGATTATGGAGGTAGTCG+AGG 0.583349 2_2:+4315026 Msa0231980:CDS
AATGCAGATCGCTCTTATGG+TGG 0.584861 2_2:+4315181 Msa0231980:CDS
GGTGGTCGTGACAGGGATGG+TGG 0.589081 2_2:+4315220 Msa0231980:CDS
GTAGTAGACCTAAGTAATTG+AGG 0.593089 2_2:+4309117 Msa0231980:five_prime_UTR
TGGTGGTTGACAAATTCTCT+GGG 0.595910 2_2:+4314814 Msa0231980:CDS
GGATTCTGGTGGTCGTGACA+GGG 0.596366 2_2:+4315213 Msa0231980:CDS
TGACAAGGAAGCAATGGAAG+AGG 0.600324 2_2:+4314869 Msa0231980:CDS
GGTCGTGATAGGGATGGCGG+TGG 0.600939 2_2:+4315265 Msa0231980:CDS
ATGCAGATCGCTCTTATGGT+GGG 0.607336 2_2:+4315182 Msa0231980:CDS
GATGATCGTCACCGAGAACG+TGG 0.610333 2_2:+4314975 Msa0231980:CDS
TCTGGTGGTCGTGACAGGGA+TGG 0.611424 2_2:+4315217 Msa0231980:CDS
GTTTGTCACATTTGATGACA+AGG 0.613183 2_2:+4314854 Msa0231980:CDS
GGTGGACGTGACAGGGATGG+CGG 0.615987 2_2:+4315283 Msa0231980:CDS
GGCGGTGGTCGTGATAGGGA+TGG 0.616824 2_2:+4315259 Msa0231980:CDS
AGTTGCTGGATTTACAGCAG+TGG 0.618491 2_2:+4315746 Msa0231980:three_prime_UTR
GTGAAGGAGAAAGAGGAGGA+AGG 0.620131 2_2:+4315110 Msa0231980:CDS
ATGAATGGAATTGACTTGGA+TGG 0.625730 2_2:+4314903 Msa0231980:CDS
GGTGGTGGTCGTGATAGGGA+TGG 0.627036 2_2:+4315238 Msa0231980:CDS
AAGTACCTCAATGAAGCTAG+AGG 0.637962 2_2:-4315396 None:intergenic
GAGATTATGGAGGTAGTCGA+GGG 0.639832 2_2:+4315027 Msa0231980:CDS
TCATCATCTCTAGATCCTTG+TGG 0.641739 2_2:-4314954 None:intergenic
GGTCGTGATAGGGATGGCGG+TGG 0.641846 2_2:+4315244 Msa0231980:CDS
GGTGGTCGTGATAGGGATGG+CGG 0.656307 2_2:+4315241 Msa0231980:CDS
GGGCGCGACAGGGATTCTGG+TGG 0.659692 2_2:+4315202 Msa0231980:CDS
TATGAGCGTCGTGGATCTGG+AGG 0.659825 2_2:+4315361 Msa0231980:CDS
ATGGAATTGACTTGGATGGA+CGG 0.661188 2_2:+4314907 Msa0231980:CDS
AAAGTACGGCAAGCTTGTTG+AGG 0.663446 2_2:+4314093 Msa0231980:CDS
CCTAGTGAAGGAGAAAGAGG+AGG 0.670336 2_2:+4315106 Msa0231980:CDS
GCGGGACCGTATGAGCGTCG+TGG 0.672558 2_2:+4315352 Msa0231980:CDS
GTTGATAAAGCCCAACCACA+AGG 0.676735 2_2:+4314939 Msa0231980:CDS
AGAGAAAGTAGATATAGTGG+TGG 0.687288 2_2:+4315142 Msa0231980:CDS
AATCGTAGCCGAGATTATGG+AGG 0.691072 2_2:+4315017 Msa0231980:CDS
GGTAGTCGAGGGTCTAATGG+CGG 0.694342 2_2:+4315038 Msa0231980:CDS
GAAGCTAGAGGTATCAACGA+TGG 0.695562 2_2:-4315384 None:intergenic
GGTGGTCGTGATAGGGATGG+CGG 0.702840 2_2:+4315262 Msa0231980:CDS
GGCGGTGAATGCTTTAAGTG+TGG 0.713199 2_2:+4315056 Msa0231980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATATTTATTTATTTA+AGG + chr2_2:4310447-4310466 Msa0231980:intron 0.0%
!! ATATAGCAAATTAAAATAAT+AGG + chr2_2:4311218-4311237 Msa0231980:intron 10.0%
!! ATATAGTTACTTAAAATAAA+TGG - chr2_2:4312725-4312744 None:intergenic 10.0%
!! AAAACAAAATAAAATTGAAT+CGG - chr2_2:4313365-4313384 None:intergenic 10.0%
!!! TCTATAACATTAATTGATTT+TGG - chr2_2:4309195-4309214 None:intergenic 15.0%
!! AATTAATGTTATAGATTGAA+AGG + chr2_2:4309200-4309219 Msa0231980:intron 15.0%
!! ATTAATGTTATAGATTGAAA+GGG + chr2_2:4309201-4309220 Msa0231980:intron 15.0%
!!! AAGATATTTTATAACAATCA+TGG - chr2_2:4309640-4309659 None:intergenic 15.0%
!!! TTATATTTCCCTAATTTTTT+TGG + chr2_2:4310337-4310356 Msa0231980:intron 15.0%
!!! TATATTTCCCTAATTTTTTT+GGG + chr2_2:4310338-4310357 Msa0231980:intron 15.0%
!! TAAATGCTTAATTAATGATT+TGG - chr2_2:4310790-4310809 None:intergenic 15.0%
!! GTTTGGAAATAAAAATAATA+TGG + chr2_2:4311059-4311078 Msa0231980:intron 15.0%
!!! ATTTTTAGATTTGATATGAA+TGG - chr2_2:4311493-4311512 None:intergenic 15.0%
!! ATGTTTAGAAATTTCTAATT+GGG + chr2_2:4311928-4311947 Msa0231980:intron 15.0%
!! TAAATAAGTTAAACAAAGTT+TGG + chr2_2:4312306-4312325 Msa0231980:intron 15.0%
!!! TGATTTTTATAAACTCTAAA+TGG - chr2_2:4312824-4312843 None:intergenic 15.0%
!!! TAGAAAACCAATTTTATTAT+GGG - chr2_2:4314603-4314622 None:intergenic 15.0%
!! TACAAAATGATAATAAGTCT+AGG + chr2_2:4309281-4309300 Msa0231980:intron 20.0%
!!! TAAGTTTTTCATTGAATCAA+TGG + chr2_2:4309374-4309393 Msa0231980:intron 20.0%
!! CTACTACATATATAAGAAAA+GGG + chr2_2:4309691-4309710 Msa0231980:intron 20.0%
!!! AGCTTTTGAATAATATTTGT+TGG - chr2_2:4309782-4309801 None:intergenic 20.0%
!!! TATTTATGTTTGTTGTTAAC+GGG - chr2_2:4310123-4310142 None:intergenic 20.0%
!!! CTATTTATGTTTGTTGTTAA+CGG - chr2_2:4310124-4310143 None:intergenic 20.0%
!! AAATATAAAGAAAGAAATGC+GGG - chr2_2:4310325-4310344 None:intergenic 20.0%
!! GAAATATAAAGAAAGAAATG+CGG - chr2_2:4310326-4310345 None:intergenic 20.0%
!! TTAAGGCTTAATTAATGATT+TGG + chr2_2:4310464-4310483 Msa0231980:intron 20.0%
!! TGTAACAACAAATAAGTTAA+GGG - chr2_2:4310491-4310510 None:intergenic 20.0%
!! ATGTAACAACAAATAAGTTA+AGG - chr2_2:4310492-4310511 None:intergenic 20.0%
!!! ACTTATTTGTTGTTACATTT+TGG + chr2_2:4310494-4310513 Msa0231980:intron 20.0%
!! ATGTAACGTTAATAACTTAT+GGG - chr2_2:4310521-4310540 None:intergenic 20.0%
!! AATGTAACGTTAATAACTTA+TGG - chr2_2:4310522-4310541 None:intergenic 20.0%
!! TAAGTTATTAACGTTACATT+TGG + chr2_2:4310522-4310541 Msa0231980:intron 20.0%
!! CCTGAATTTAAATGTATTAA+GGG - chr2_2:4310943-4310962 None:intergenic 20.0%
!! ACCTGAATTTAAATGTATTA+AGG - chr2_2:4310944-4310963 None:intergenic 20.0%
!! CCTGAATTTAAATGAATTTA+TGG - chr2_2:4311005-4311024 None:intergenic 20.0%
!! CCATAAATTCATTTAAATTC+AGG + chr2_2:4311002-4311021 Msa0231980:intron 20.0%
!!! GTTGCAAATTTTCAATAATA+TGG + chr2_2:4311128-4311147 Msa0231980:intron 20.0%
!! TTAGAATTTATTGTGTGTAA+AGG - chr2_2:4311577-4311596 None:intergenic 20.0%
!!! TTAAATGAGGAGAAATTTTT+TGG - chr2_2:4311652-4311671 None:intergenic 20.0%
!! CAATTAGAAATTTCTAAACA+TGG - chr2_2:4311929-4311948 None:intergenic 20.0%
!! CATGTTTAGAAATTTCTAAT+TGG + chr2_2:4311927-4311946 Msa0231980:intron 20.0%
!! TATACTGAATCAAAATAAAG+TGG - chr2_2:4312191-4312210 None:intergenic 20.0%
!! CAACTAACTTACATTAAAAA+AGG - chr2_2:4312653-4312672 None:intergenic 20.0%
!!! CTTTTTTAATGTAAGTTAGT+TGG + chr2_2:4312651-4312670 Msa0231980:intron 20.0%
!! GTAATTTAAATAGTTCCATA+AGG - chr2_2:4313009-4313028 None:intergenic 20.0%
!!! TTTTTGTTTTGATTAGTGTA+TGG + chr2_2:4313388-4313407 Msa0231980:intron 20.0%
!!! TAGTCATTTTTTTGGAATTT+AGG + chr2_2:4313483-4313502 Msa0231980:intron 20.0%
!!! AGTCATTTTTTTGGAATTTA+GGG + chr2_2:4313484-4313503 Msa0231980:intron 20.0%
!!! ATGTTGTTTATGTATATATG+TGG + chr2_2:4313593-4313612 Msa0231980:intron 20.0%
!!! TGTTGTTTATGTATATATGT+GGG + chr2_2:4313594-4313613 Msa0231980:intron 20.0%
!! ATTCATGTACTAGAAATTAT+GGG + chr2_2:4313656-4313675 Msa0231980:intron 20.0%
!! TATTACAATTCTCAACATTA+GGG - chr2_2:4313707-4313726 None:intergenic 20.0%
!! TTATTACAATTCTCAACATT+AGG - chr2_2:4313708-4313727 None:intergenic 20.0%
!! AATGTTGAGAATTGTAATAA+AGG + chr2_2:4313708-4313727 Msa0231980:intron 20.0%
!! ACATTTAAATTGTGTATTTG+AGG + chr2_2:4313853-4313872 Msa0231980:intron 20.0%
!! AATATTTAAATCAGCTATAG+GGG - chr2_2:4313948-4313967 None:intergenic 20.0%
!! GAATATTTAAATCAGCTATA+GGG - chr2_2:4313949-4313968 None:intergenic 20.0%
!! TGAATATTTAAATCAGCTAT+AGG - chr2_2:4313950-4313969 None:intergenic 20.0%
!!! ATAGCTGATTTAAATATTCA+AGG + chr2_2:4313950-4313969 Msa0231980:intron 20.0%
!!! CTTTTATTCATTGATAACAT+TGG + chr2_2:4314255-4314274 Msa0231980:intron 20.0%
!!! GTAGAAAACCAATTTTATTA+TGG - chr2_2:4314604-4314623 None:intergenic 20.0%
!!! TACTGAATTTATTTTGTAAG+TGG + chr2_2:4314621-4314640 Msa0231980:intron 20.0%
!! TAATCATTCATTGACATTTA+AGG + chr2_2:4314770-4314789 Msa0231980:intron 20.0%
!!! ATATTTTGATTTGCAATACT+TGG + chr2_2:4315582-4315601 Msa0231980:three_prime_UTR 20.0%
!! TTTTCTAACCTCAATTACTT+AGG - chr2_2:4309128-4309147 None:intergenic 25.0%
!!! GATTTTGGTTCAGTTTTAAT+TGG - chr2_2:4309180-4309199 None:intergenic 25.0%
! TTGGAGGAAAAATAAAACTT+AGG + chr2_2:4309434-4309453 Msa0231980:intron 25.0%
! ATGATCGACATAAACTAATT+TGG - chr2_2:4309497-4309516 None:intergenic 25.0%
!! TCAATTTTAGATCTTCATCT+GGG - chr2_2:4309593-4309612 None:intergenic 25.0%
!! ATCAATTTTAGATCTTCATC+TGG - chr2_2:4309594-4309613 None:intergenic 25.0%
! GCTACTACATATATAAGAAA+AGG + chr2_2:4309690-4309709 Msa0231980:intron 25.0%
!! TGATGTGTGTATTTTCTTAT+GGG - chr2_2:4309891-4309910 None:intergenic 25.0%
!! ATGATGTGTGTATTTTCTTA+TGG - chr2_2:4309892-4309911 None:intergenic 25.0%
!!! CGTGTGTTTTATTTCATTTT+TGG + chr2_2:4309991-4310010 Msa0231980:intron 25.0%
!! GTGAATCAATAATTTGAAGT+TGG + chr2_2:4310013-4310032 Msa0231980:intron 25.0%
! CATCAGATTCATAATAATAC+TGG + chr2_2:4310152-4310171 Msa0231980:intron 25.0%
!!! TGAATGAAAGCATATTTTAG+AGG + chr2_2:4310184-4310203 Msa0231980:intron 25.0%
!! GTTTATCTTTTGAACAACAA+TGG + chr2_2:4310243-4310262 Msa0231980:intron 25.0%
! ATTTCTGTGTGAATAAAAGT+AGG - chr2_2:4310370-4310389 None:intergenic 25.0%
! GCTAACATATACTAACTTAA+GGG - chr2_2:4310549-4310568 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr2_2:4310762-4310781 Msa0231980:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr2_2:4310763-4310782 Msa0231980:intron 25.0%
!! AAGCTTTAGTAAGTAAGATT+TGG - chr2_2:4310830-4310849 None:intergenic 25.0%
! GAAAATGCTAGGTTAATTTA+GGG - chr2_2:4310874-4310893 None:intergenic 25.0%
! ATTTAAATGTATTAAGGGTG+AGG - chr2_2:4310938-4310957 None:intergenic 25.0%
! CCCTTAATACATTTAAATTC+AGG + chr2_2:4310940-4310959 Msa0231980:intron 25.0%
!!! ACATTTAAATTCAGGTTGTT+TGG + chr2_2:4310948-4310967 Msa0231980:intron 25.0%
!!! TCATTTAAATTCAGGTTGTT+TGG + chr2_2:4311010-4311029 Msa0231980:intron 25.0%
! TTGGCAATTCATTTCATTTA+AGG + chr2_2:4310967-4310986 Msa0231980:intron 25.0%
! AACATTTCAATAATAGAACG+CGG + chr2_2:4311086-4311105 Msa0231980:intron 25.0%
! GAAAAAGCTTGGTAAAAATT+AGG - chr2_2:4311297-4311316 None:intergenic 25.0%
!! GTAAAAGTGCATTTAATGAA+TGG - chr2_2:4311471-4311490 None:intergenic 25.0%
! CAAACAATTGCATTTAAATG+AGG - chr2_2:4311521-4311540 None:intergenic 25.0%
! CAAACAATTGCATTTAAATG+AGG - chr2_2:4311521-4311540 None:intergenic 25.0%
! AAGATTGTTCTTAAAGAAGA+AGG - chr2_2:4311689-4311708 None:intergenic 25.0%
! ATACATCTCTAAATCATCAT+TGG - chr2_2:4312072-4312091 None:intergenic 25.0%
! AGCTACAAGATAACAATTAT+CGG + chr2_2:4312424-4312443 Msa0231980:intron 25.0%
! ACATAATAGATAGTTTAAGC+AGG + chr2_2:4312452-4312471 Msa0231980:intron 25.0%
! TAGATCCTCTAATTTATATG+TGG - chr2_2:4312481-4312500 None:intergenic 25.0%
!!! TGATTTTAACATGCATCATA+TGG + chr2_2:4312581-4312600 Msa0231980:intron 25.0%
!!! CTAATGATAGAAAAGTATCT+TGG - chr2_2:4312626-4312645 None:intergenic 25.0%
! ATATACATTCAATCATAGTC+AGG - chr2_2:4312694-4312713 None:intergenic 25.0%
! GAATGAATGAATGAATATGT+TGG - chr2_2:4313316-4313335 None:intergenic 25.0%
!!! TTTTTTGGAATTTAGGGTTT+TGG + chr2_2:4313490-4313509 Msa0231980:intron 25.0%
!!! TTTTTGGAATTTAGGGTTTT+GGG + chr2_2:4313491-4313510 Msa0231980:intron 25.0%
!! CATTTGAGGTTAATTTGATT+GGG + chr2_2:4313563-4313582 Msa0231980:intron 25.0%
! TTTATGTATATATGTGGGAT+GGG + chr2_2:4313599-4313618 Msa0231980:intron 25.0%
! ATGAATCAAAACAAAAAACC+CGG - chr2_2:4313642-4313661 None:intergenic 25.0%
! GATTCATGTACTAGAAATTA+TGG + chr2_2:4313655-4313674 Msa0231980:intron 25.0%
! TTCATGTACTAGAAATTATG+GGG + chr2_2:4313657-4313676 Msa0231980:intron 25.0%
! TGTAATAAAGGTGATGTATT+TGG + chr2_2:4313720-4313739 Msa0231980:intron 25.0%
! GTAATAAAGGTGATGTATTT+GGG + chr2_2:4313721-4313740 Msa0231980:intron 25.0%
!!! TATGATCATTTTAGGGATTT+AGG + chr2_2:4313747-4313766 Msa0231980:intron 25.0%
!!! ATGATCATTTTAGGGATTTA+GGG + chr2_2:4313748-4313767 Msa0231980:intron 25.0%
!! TATTTGAGGTGAATTTGATT+GGG + chr2_2:4313867-4313886 Msa0231980:intron 25.0%
! TTTGATTGGGTTTATTATTG+TGG + chr2_2:4313880-4313899 Msa0231980:intron 25.0%
!! TCTTGTTTATATATGTGTGA+TGG + chr2_2:4313913-4313932 Msa0231980:intron 25.0%
! CTTGTTTATATATGTGTGAT+GGG + chr2_2:4313914-4313933 Msa0231980:intron 25.0%
! AAAGATGCATTTGAAAAGTA+CGG + chr2_2:4314079-4314098 Msa0231980:CDS 25.0%
! AAAAGAAAAATCACAGAAGT+TGG - chr2_2:4314240-4314259 None:intergenic 25.0%
! TGATAACATTGGATGAAAAA+TGG + chr2_2:4314266-4314285 Msa0231980:intron 25.0%
! TCAAATTAGTCAATTCAAAC+AGG + chr2_2:4314577-4314596 Msa0231980:intron 25.0%
!!! TGATTTTTGCAGTTTTGAAT+TGG + chr2_2:4315480-4315499 Msa0231980:intron 25.0%
!!! GTGTTCTTGGATTTTTTTTA+TGG + chr2_2:4315541-4315560 Msa0231980:three_prime_UTR 25.0%
!!! ATCTCACTTGGTTTTGTATT+AGG + chr2_2:4309150-4309169 Msa0231980:intron 30.0%
AATCTCTTATTGCTCATGTT+CGG - chr2_2:4309228-4309247 None:intergenic 30.0%
ACATCATGTGCAAAAAACAT+AGG + chr2_2:4309258-4309277 Msa0231980:intron 30.0%
!! GTTGTGTATTTTTACACGTT+TGG - chr2_2:4309307-4309326 None:intergenic 30.0%
TAAAAACTGAAGAACTCGAA+AGG - chr2_2:4309356-4309375 None:intergenic 30.0%
! AGTGAAGAAAAATCTGAAGT+AGG - chr2_2:4309538-4309557 None:intergenic 30.0%
AATGAAATAAAACACACGTG+CGG - chr2_2:4309989-4310008 None:intergenic 30.0%
! TCAATAATTTGAAGTTGGCT+TGG + chr2_2:4310018-4310037 Msa0231980:intron 30.0%
!! CATATTTTAGAGGACTAATC+AGG + chr2_2:4310194-4310213 Msa0231980:intron 30.0%
GGCTAACATATACTAACTTA+AGG - chr2_2:4310550-4310569 None:intergenic 30.0%
! CATGTGTCTATTTAACGTTT+TGG - chr2_2:4310600-4310619 None:intergenic 30.0%
GTTAAATAGACACATGTGAA+CGG + chr2_2:4310604-4310623 Msa0231980:intron 30.0%
TTTAACAGTGGGATCTTATT+TGG + chr2_2:4310676-4310695 Msa0231980:intron 30.0%
!! ATCTTATTTGGTCTTTTGGA+CGG + chr2_2:4310688-4310707 Msa0231980:intron 30.0%
GGAAAATGCTAGGTTAATTT+AGG - chr2_2:4310875-4310894 None:intergenic 30.0%
GGAATTAATGCGTTAGAAAT+GGG - chr2_2:4310900-4310919 None:intergenic 30.0%
TGGAATTAATGCGTTAGAAA+TGG - chr2_2:4310901-4310920 None:intergenic 30.0%
ATTTCTAACGCATTAATTCC+AGG + chr2_2:4310900-4310919 Msa0231980:intron 30.0%
GAATTTATGGCGTGTATTAA+TGG - chr2_2:4310992-4311011 None:intergenic 30.0%
TCATTTAAGGACACAATGTT+TGG + chr2_2:4311042-4311061 Msa0231980:intron 30.0%
CGGTGGAAAATAAGATAATA+TGG + chr2_2:4311106-4311125 Msa0231980:intron 30.0%
GCTTGGTAAAAATTAGGTTA+GGG - chr2_2:4311291-4311310 None:intergenic 30.0%
AGCTTGGTAAAAATTAGGTT+AGG - chr2_2:4311292-4311311 None:intergenic 30.0%
CGAATTTATTGCGTTGAAAT+GGG - chr2_2:4311322-4311341 None:intergenic 30.0%
TCATTTATTGCATGACAAAG+GGG - chr2_2:4311362-4311381 None:intergenic 30.0%
GTCATTTATTGCATGACAAA+GGG - chr2_2:4311363-4311382 None:intergenic 30.0%
! TGTCATTTATTGCATGACAA+AGG - chr2_2:4311364-4311383 None:intergenic 30.0%
!!! GGAAATGTGTGTTTTTTTTG+AGG + chr2_2:4311869-4311888 Msa0231980:intron 30.0%
! GGATTGACTCAAAGAAAATA+TGG - chr2_2:4311908-4311927 None:intergenic 30.0%
TATTACACGAGATTCATATG+CGG + chr2_2:4311985-4312004 Msa0231980:intron 30.0%
!! CATTAGATTTTCTGAGGATA+AGG - chr2_2:4312131-4312150 None:intergenic 30.0%
! CGTATTCATTAGATTTTCTG+AGG - chr2_2:4312137-4312156 None:intergenic 30.0%
TCTTCTAACACTATATCAGA+TGG - chr2_2:4312237-4312256 None:intergenic 30.0%
!! GTTATCTTGTAGCTTTGTTT+CGG - chr2_2:4312418-4312437 None:intergenic 30.0%
GGTTACCACATATAAATTAG+AGG + chr2_2:4312473-4312492 Msa0231980:intron 30.0%
TTAACAAGTTCAACTCAGTT+TGG + chr2_2:4312513-4312532 Msa0231980:intron 30.0%
ATGGAATTTCAATCCGAAAA+TGG + chr2_2:4312600-4312619 Msa0231980:intron 30.0%
!!! AAAAGTATCTTGGCCATTTT+CGG - chr2_2:4312616-4312635 None:intergenic 30.0%
ATGTAAGTTAGTTGGTCATA+TGG + chr2_2:4312659-4312678 Msa0231980:intron 30.0%
! TAATATCTAAGGCTTAAGAG+AGG - chr2_2:4312765-4312784 None:intergenic 30.0%
TTGAGACATGCTAATATCTA+AGG - chr2_2:4312776-4312795 None:intergenic 30.0%
TCTAAATGGAATGAAGATAG+TGG - chr2_2:4312810-4312829 None:intergenic 30.0%
AATTTATGCAAACACGTTCT+TGG - chr2_2:4312905-4312924 None:intergenic 30.0%
GTAATACATCACATTCCTTA+TGG + chr2_2:4312991-4313010 Msa0231980:intron 30.0%
!!! TATTCGTCGTTTTTCTTCAT+TGG + chr2_2:4313051-4313070 Msa0231980:intron 30.0%
TGATTAGTGTATGGAAATCA+TGG + chr2_2:4313397-4313416 Msa0231980:intron 30.0%
GATTAGTGTATGGAAATCAT+GGG + chr2_2:4313398-4313417 Msa0231980:intron 30.0%
!! TCATGGGTTTACTTTGATTT+TGG + chr2_2:4313414-4313433 Msa0231980:intron 30.0%
TGTAATAAAGCTACTACCTT+TGG + chr2_2:4313453-4313472 Msa0231980:intron 30.0%
GTAATAAAGCTACTACCTTT+GGG + chr2_2:4313454-4313473 Msa0231980:intron 30.0%
TAATAAAGCTACTACCTTTG+GGG + chr2_2:4313455-4313474 Msa0231980:intron 30.0%
!!! GGGTTCTTTAGTCATTTTTT+TGG + chr2_2:4313475-4313494 Msa0231980:intron 30.0%
TATCCATTTAGTTGTACACT+TGG + chr2_2:4313525-4313544 Msa0231980:intron 30.0%
TCTACTTAATTGTGCATTTG+AGG + chr2_2:4313549-4313568 Msa0231980:intron 30.0%
! GCATTTGAGGTTAATTTGAT+TGG + chr2_2:4313562-4313581 Msa0231980:intron 30.0%
GTTTATGTATATATGTGGGA+TGG + chr2_2:4313598-4313617 Msa0231980:intron 30.0%
TGAATCAAAACAAAAAACCC+GGG - chr2_2:4313641-4313660 None:intergenic 30.0%
! TTGGGTTCTATGATCATTTT+AGG + chr2_2:4313739-4313758 Msa0231980:intron 30.0%
! TGGGTTCTATGATCATTTTA+GGG + chr2_2:4313740-4313759 Msa0231980:intron 30.0%
! GTATTTGAGGTGAATTTGAT+TGG + chr2_2:4313866-4313885 Msa0231980:intron 30.0%
! TATATATGTGTGATGGGATT+TGG + chr2_2:4313920-4313939 Msa0231980:intron 30.0%
TTGAAACTACACACAATTGA+AGG - chr2_2:4313990-4314009 None:intergenic 30.0%
TTGTGTGTAGTTTCAAATGT+CGG + chr2_2:4313994-4314013 Msa0231980:intron 30.0%
AGCATGAAATTGTAACAAGA+TGG - chr2_2:4314172-4314191 None:intergenic 30.0%
AAAATCAGCATACCAAACAT+AGG + chr2_2:4314314-4314333 Msa0231980:intron 30.0%
ACTTATAGCATCTATGAAAC+AGG - chr2_2:4314458-4314477 None:intergenic 30.0%
AAACAGGCCCATAATAAAAT+TGG + chr2_2:4314593-4314612 Msa0231980:intron 30.0%
AATTATACATGGAAGGTCAA+TGG - chr2_2:4314655-4314674 None:intergenic 30.0%
AGCATACAATTATACATGGA+AGG - chr2_2:4314662-4314681 None:intergenic 30.0%
TCCATGTATAATTGTATGCT+TGG + chr2_2:4314662-4314681 Msa0231980:intron 30.0%
CCATGTATAATTGTATGCTT+GGG + chr2_2:4314663-4314682 Msa0231980:intron 30.0%
GTTATTTGTATGAGAGTGAA+AGG - chr2_2:4314696-4314715 None:intergenic 30.0%
TTAGCAAGAAAATGTGTGAT+GGG - chr2_2:4314750-4314769 None:intergenic 30.0%
ATTAGCAAGAAAATGTGTGA+TGG - chr2_2:4314751-4314770 None:intergenic 30.0%
!!! GCTAAATATTTTGAGTTAGG+TGG + chr2_2:4314794-4314813 Msa0231980:intron 30.0%
!!! AAATATTTTGAGTTAGGTGG+TGG + chr2_2:4314797-4314816 Msa0231980:intron 30.0%
! CTTTTTGCACATGTTTTTCA+TGG + chr2_2:4315437-4315456 Msa0231980:intron 30.0%
!!! TTTTTGCAGTTTTGAATTGG+AGG + chr2_2:4315483-4315502 Msa0231980:intron 30.0%
!!! TTTTGCAGTTTTGAATTGGA+GGG + chr2_2:4315484-4315503 Msa0231980:intron 30.0%
ATTTCAATAGAGCTAACGAT+TGG - chr2_2:4315640-4315659 None:intergenic 30.0%
ATGCTATCATTATTTACTGC+TGG + chr2_2:4315703-4315722 Msa0231980:three_prime_UTR 30.0%
TACATAGACATATTAGTTGC+TGG + chr2_2:4315732-4315751 Msa0231980:three_prime_UTR 30.0%
GTAGTAGACCTAAGTAATTG+AGG + chr2_2:4309117-4309136 Msa0231980:five_prime_UTR 35.0%
GGTTAGAAAAAGATCTCACT+TGG + chr2_2:4309138-4309157 Msa0231980:intron 35.0%
! ATGCTTCCAAAGTCAAGTTT+TGG + chr2_2:4309405-4309424 Msa0231980:intron 35.0%
AACTGACCAAAACTTGACTT+TGG - chr2_2:4309414-4309433 None:intergenic 35.0%
!! AGTCAAGTTTTGGTCAGTTT+TGG + chr2_2:4309415-4309434 Msa0231980:intron 35.0%
!!! GATCATCGATTTTGCTACAT+TGG + chr2_2:4309463-4309482 Msa0231980:intron 35.0%
GTGCAATATTGCACATGTTA+AGG + chr2_2:4309726-4309745 Msa0231980:intron 35.0%
CAAACTCACACTTAAAAGCT+TGG - chr2_2:4309939-4309958 None:intergenic 35.0%
ATGAAATAAAACACACGTGC+GGG - chr2_2:4309988-4310007 None:intergenic 35.0%
! GCAATTACACTTCTGAAAGA+TGG + chr2_2:4310086-4310105 Msa0231980:intron 35.0%
!!! TCCCTAATTTTTTTGGGCTT+AGG + chr2_2:4310344-4310363 Msa0231980:intron 35.0%
GCCTAAGCCCAAAAAAATTA+GGG - chr2_2:4310348-4310367 None:intergenic 35.0%
GTTAGCCAAATAAATCCTCA+CGG + chr2_2:4310563-4310582 Msa0231980:intron 35.0%
ATGTGTATCACCTTAGACAT+TGG + chr2_2:4310644-4310663 Msa0231980:intron 35.0%
AATCGTTAAGCCAATGTCTA+AGG - chr2_2:4310657-4310676 None:intergenic 35.0%
!! TGGCTTAACGATTTTAACAG+TGG + chr2_2:4310664-4310683 Msa0231980:intron 35.0%
!! GGCTTAACGATTTTAACAGT+GGG + chr2_2:4310665-4310684 Msa0231980:intron 35.0%
!! TGGGATCTTATTTGGTCTTT+TGG + chr2_2:4310684-4310703 Msa0231980:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr2_2:4310770-4310789 None:intergenic 35.0%
! GCTAGGTTAATTTAGGGTTA+GGG - chr2_2:4310868-4310887 None:intergenic 35.0%
! TGCTAGGTTAATTTAGGGTT+AGG - chr2_2:4310869-4310888 None:intergenic 35.0%
TTAATGCGTTAGAAATGGGA+GGG - chr2_2:4310896-4310915 None:intergenic 35.0%
ATTAATGCGTTAGAAATGGG+AGG - chr2_2:4310897-4310916 None:intergenic 35.0%
TAAATGTATTAAGGGTGAGG+AGG - chr2_2:4310935-4310954 None:intergenic 35.0%
ATTTCAATAATAGAACGCGG+TGG + chr2_2:4311089-4311108 Msa0231980:intron 35.0%
!! CTTTGTTTCTAAAGCTTGTC+TGG + chr2_2:4311256-4311275 Msa0231980:intron 35.0%
ATTTATTGCGTTGAAATGGG+AGG - chr2_2:4311319-4311338 None:intergenic 35.0%
GCGAATTTATTGCGTTGAAA+TGG - chr2_2:4311323-4311342 None:intergenic 35.0%
ATGTGAGTCGAAATGCTTTA+AGG - chr2_2:4311428-4311447 None:intergenic 35.0%
GTGCATTTAATGAATGGCAA+AGG - chr2_2:4311465-4311484 None:intergenic 35.0%
AAATTCATTGCGTGACAAAG+GGG - chr2_2:4311615-4311634 None:intergenic 35.0%
GAAATTCATTGCGTGACAAA+GGG - chr2_2:4311616-4311635 None:intergenic 35.0%
TGAAATTCATTGCGTGACAA+AGG - chr2_2:4311617-4311636 None:intergenic 35.0%
! AAATGGAATGAAGATAGTGG+AGG - chr2_2:4312807-4312826 None:intergenic 35.0%
AACACGTTCTTGGATTTACA+TGG - chr2_2:4312895-4312914 None:intergenic 35.0%
AGTTAAATGCAGTATGAGTG+TGG + chr2_2:4313111-4313130 Msa0231980:intron 35.0%
AAATGACTAAAGAACCCCAA+AGG - chr2_2:4313472-4313491 None:intergenic 35.0%
GAACCAAGTGTACAACTAAA+TGG - chr2_2:4313531-4313550 None:intergenic 35.0%
ACTAGAAATTATGGGGTTCT+TGG + chr2_2:4313664-4313683 Msa0231980:intron 35.0%
CTAGAAATTATGGGGTTCTT+GGG + chr2_2:4313665-4313684 Msa0231980:intron 35.0%
GTAGTTTCAAATGTCGGATA+CGG + chr2_2:4314000-4314019 Msa0231980:intron 35.0%
GAAGTTGGCAAAAGTAAAGA+AGG - chr2_2:4314225-4314244 None:intergenic 35.0%
GCATACCAAACATAGGATAT+TGG + chr2_2:4314321-4314340 Msa0231980:intron 35.0%
CATCACCAATATCCTATGTT+TGG - chr2_2:4314329-4314348 None:intergenic 35.0%
CTACACTATCTATCCAAACA+TGG - chr2_2:4314352-4314371 None:intergenic 35.0%
CCCAAGCATACAATTATACA+TGG - chr2_2:4314666-4314685 None:intergenic 35.0%
AGGGGATGTATATAGTGAAA+GGG - chr2_2:4314718-4314737 None:intergenic 35.0%
! AGAAAATGTGTGATGGGAAT+GGG - chr2_2:4314744-4314763 None:intergenic 35.0%
! AAGAAAATGTGTGATGGGAA+TGG - chr2_2:4314745-4314764 None:intergenic 35.0%
!!! GGCGCTAAATATTTTGAGTT+AGG + chr2_2:4314791-4314810 Msa0231980:intron 35.0%
! GTTTGTCACATTTGATGACA+AGG + chr2_2:4314854-4314873 Msa0231980:CDS 35.0%
! ATTTGATGACAAGGAAGCAA+TGG + chr2_2:4314863-4314882 Msa0231980:CDS 35.0%
!! ATGAATGGAATTGACTTGGA+TGG + chr2_2:4314903-4314922 Msa0231980:CDS 35.0%
! ATGCTTTAAGTGTGGTAAAC+CGG + chr2_2:4315064-4315083 Msa0231980:CDS 35.0%
AGAGAAAGTAGATATAGTGG+TGG + chr2_2:4315142-4315161 Msa0231980:CDS 35.0%
!! TCTTTTGATGACAGTGTTCT+TGG + chr2_2:4315528-4315547 Msa0231980:three_prime_UTR 35.0%
TGAATGGTTACATAAGTTGC+TGG + chr2_2:4315800-4315819 Msa0231980:three_prime_UTR 35.0%
AAACTGAAGAACTCGAAAGG+AGG - chr2_2:4309353-4309372 None:intergenic 40.0%
!! CAAGTTTTGGTCAGTTTTGG+AGG + chr2_2:4309418-4309437 Msa0231980:intron 40.0%
!!! CATCGATTTTGCTACATTGG+AGG + chr2_2:4309466-4309485 Msa0231980:intron 40.0%
!! TAGCAAGTGATAGAGCATTG+TGG - chr2_2:4309674-4309693 None:intergenic 40.0%
GGCCTAAGCCCAAAAAAATT+AGG - chr2_2:4310349-4310368 None:intergenic 40.0%
ACTGACCGTGAGGATTTATT+TGG - chr2_2:4310571-4310590 None:intergenic 40.0%
TTGGACGGAAGATGACTTAA+AGG + chr2_2:4310703-4310722 Msa0231980:intron 40.0%
TGGACGGAAGATGACTTAAA+GGG + chr2_2:4310704-4310723 Msa0231980:intron 40.0%
TGAAATGGGAGGAAAAAGCT+TGG - chr2_2:4311308-4311327 None:intergenic 40.0%
GACATTCATTGCGTGACAAA+GGG - chr2_2:4311761-4311780 None:intergenic 40.0%
TGACATTCATTGCGTGACAA+AGG - chr2_2:4311762-4311781 None:intergenic 40.0%
TGAAGATGATTTCTGCTGAG+GGG - chr2_2:4311824-4311843 None:intergenic 40.0%
GTGAAGATGATTTCTGCTGA+GGG - chr2_2:4311825-4311844 None:intergenic 40.0%
AAATCATCTTCACCCTCTCA+CGG + chr2_2:4311832-4311851 Msa0231980:intron 40.0%
!!! CGTCGTTTTTCTTCATTGGT+TGG + chr2_2:4313055-4313074 Msa0231980:intron 40.0%
TCCATCTACTCAGTACTCTT+AGG + chr2_2:4313280-4313299 Msa0231980:five_prime_UTR 40.0%
!! ACCTAAGAGTACTGAGTAGA+TGG - chr2_2:4313284-4313303 None:intergenic 40.0%
GGATTTGAATCTCTATAGCC+CGG + chr2_2:4313620-4313639 Msa0231980:intron 40.0%
GATTTGAATCTCTATAGCCC+GGG + chr2_2:4313621-4313640 Msa0231980:intron 40.0%
GATGAGTTTCGTTGCTTCAT+TGG + chr2_2:4314022-4314041 Msa0231980:CDS 40.0%
TATCAGAAGTTGACCATGCA+AGG - chr2_2:4314051-4314070 None:intergenic 40.0%
!! GATATTGGTGATGCCATGTT+TGG + chr2_2:4314336-4314355 Msa0231980:intron 40.0%
CAGGGGATGTATATAGTGAA+AGG - chr2_2:4314719-4314738 None:intergenic 40.0%
TGGTGGTTGACAAATTCTCT+GGG + chr2_2:4314814-4314833 Msa0231980:CDS 40.0%
GGCTATGAATGGAATTGACT+TGG + chr2_2:4314899-4314918 Msa0231980:CDS 40.0%
!! ATGGAATTGACTTGGATGGA+CGG + chr2_2:4314907-4314926 Msa0231980:CDS 40.0%
ATCTCTAGATCCTTGTGGTT+GGG - chr2_2:4314952-4314971 None:intergenic 40.0%
TCATCATCTCTAGATCCTTG+TGG - chr2_2:4314957-4314976 None:intergenic 40.0%
!! GTAAACCGGTCATTTTGCAA+GGG + chr2_2:4315078-4315097 Msa0231980:CDS 40.0%
GGCAGAGAAAGTAGATATAG+TGG + chr2_2:4315139-4315158 Msa0231980:CDS 40.0%
AGTAGATATAGTGGTGGCTA+TGG + chr2_2:4315148-4315167 Msa0231980:CDS 40.0%
! TGATACCTCTAGCTTCATTG+AGG + chr2_2:4315391-4315410 Msa0231980:CDS 40.0%
AAGTACCTCAATGAAGCTAG+AGG - chr2_2:4315399-4315418 None:intergenic 40.0%
ATTAGTGACTCGTGCATGAA+TGG + chr2_2:4315784-4315803 Msa0231980:three_prime_UTR 40.0%
AAGAACTCGAAAGGAGGAAG+GGG - chr2_2:4309347-4309366 None:intergenic 45.0%
GAAGAACTCGAAAGGAGGAA+GGG - chr2_2:4309348-4309367 None:intergenic 45.0%
TGAAGAACTCGAAAGGAGGA+AGG - chr2_2:4309349-4309368 None:intergenic 45.0%
AATAAAACACACGTGCGGGT+GGG - chr2_2:4309984-4310003 None:intergenic 45.0%
AAATAAAACACACGTGCGGG+TGG - chr2_2:4309985-4310004 None:intergenic 45.0%
GAAATGGGAGGGAAAATGCT+AGG - chr2_2:4310885-4310904 None:intergenic 45.0%
TATTGCATGACAAAGGGGTG+AGG - chr2_2:4311357-4311376 None:intergenic 45.0%
TGAATGGCAAAGGAGTGAGA+AGG - chr2_2:4311455-4311474 None:intergenic 45.0%
TTGCGTGACAAAGGGTTAGA+AGG - chr2_2:4311753-4311772 None:intergenic 45.0%
GGTGAAGATGATTTCTGCTG+AGG - chr2_2:4311826-4311845 None:intergenic 45.0%
AATCATCTTCACCCTCTCAC+GGG + chr2_2:4311833-4311852 Msa0231980:intron 45.0%
!! GGAATGAAGATAGTGGAGGT+CGG - chr2_2:4312803-4312822 None:intergenic 45.0%
! TCTCGTATCGTCGGTTACTT+AGG - chr2_2:4313162-4313181 None:intergenic 45.0%
! GGGATTTAGGGTATCAGTTG+TGG + chr2_2:4313760-4313779 Msa0231980:intron 45.0%
GAGTTTCGTTGCTTCATTGG+TGG + chr2_2:4314025-4314044 Msa0231980:CDS 45.0%
!! AAAGTACGGCAAGCTTGTTG+AGG + chr2_2:4314093-4314112 Msa0231980:CDS 45.0%
GTGGTGGTTGACAAATTCTC+TGG + chr2_2:4314813-4314832 Msa0231980:CDS 45.0%
TGACAAGGAAGCAATGGAAG+AGG + chr2_2:4314869-4314888 Msa0231980:CDS 45.0%
AGCAATGGAAGAGGCTATTG+AGG + chr2_2:4314878-4314897 Msa0231980:CDS 45.0%
GAGGCTATTGAGGCTATGAA+TGG + chr2_2:4314888-4314907 Msa0231980:CDS 45.0%
! GTTGATAAAGCCCAACCACA+AGG + chr2_2:4314939-4314958 Msa0231980:CDS 45.0%
CATCTCTAGATCCTTGTGGT+TGG - chr2_2:4314953-4314972 None:intergenic 45.0%
AATCGTAGCCGAGATTATGG+AGG + chr2_2:4315017-4315036 Msa0231980:CDS 45.0%
CTCGACTACCTCCATAATCT+CGG - chr2_2:4315028-4315047 None:intergenic 45.0%
GAGATTATGGAGGTAGTCGA+GGG + chr2_2:4315027-4315046 Msa0231980:CDS 45.0%
!! GGTAAACCGGTCATTTTGCA+AGG + chr2_2:4315077-4315096 Msa0231980:CDS 45.0%
CTCCTCTTTCTCCTTCACTA+GGG - chr2_2:4315108-4315127 None:intergenic 45.0%
AGGAATGCAGATCGCTCTTA+TGG + chr2_2:4315178-4315197 Msa0231980:CDS 45.0%
AATGCAGATCGCTCTTATGG+TGG + chr2_2:4315181-4315200 Msa0231980:CDS 45.0%
ATGCAGATCGCTCTTATGGT+GGG + chr2_2:4315182-4315201 Msa0231980:CDS 45.0%
!! GAAGCTAGAGGTATCAACGA+TGG - chr2_2:4315387-4315406 None:intergenic 45.0%
AGTTGCTGGATTTACAGCAG+TGG + chr2_2:4315746-4315765 Msa0231980:three_prime_UTR 45.0%
GTTGCTGGATTTACAGCAGT+GGG + chr2_2:4315747-4315766 Msa0231980:three_prime_UTR 45.0%
GGAGGAAGGGGAAGTTAAGA+CGG - chr2_2:4309335-4309354 None:intergenic 50.0%
TTGGCAAAAGACTGACCGTG+AGG - chr2_2:4310581-4310600 None:intergenic 50.0%
!! GGGTTAGGGTTAGCTTGACT+TGG - chr2_2:4310854-4310873 None:intergenic 50.0%
GTGAGGAGGTCAAACAAACC+TGG - chr2_2:4310921-4310940 None:intergenic 50.0%
CTCTCTCTCTCTCGTATCGT+CGG - chr2_2:4313171-4313190 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr2_2:4313179-4313198 Msa0231980:intron 50.0%
! AGAGAGGCGGAATCTGAAAC+AGG + chr2_2:4313213-4313232 Msa0231980:five_prime_UTR 50.0%
! GCTTGAGCTTGAGCTTGTTC+CGG - chr2_2:4313248-4313267 None:intergenic 50.0%
AAGCCATCCTAGAGAGCTTC+TGG + chr2_2:4314487-4314506 Msa0231980:intron 50.0%
! TGTCCAGAAGCTCTCTAGGA+TGG - chr2_2:4314493-4314512 None:intergenic 50.0%
GTCATGTCCAGAAGCTCTCT+AGG - chr2_2:4314497-4314516 None:intergenic 50.0%
! TGTGATGGGAATGGGATCAG+GGG - chr2_2:4314736-4314755 None:intergenic 50.0%
! GTGTGATGGGAATGGGATCA+GGG - chr2_2:4314737-4314756 None:intergenic 50.0%
! TGTGTGATGGGAATGGGATC+AGG - chr2_2:4314738-4314757 None:intergenic 50.0%
AAATTCTCTGGGCGTTCTCG+TGG + chr2_2:4314825-4314844 Msa0231980:CDS 50.0%
CGCAATCGTAGCCGAGATTA+TGG + chr2_2:4315014-4315033 Msa0231980:CDS 50.0%
CGAGATTATGGAGGTAGTCG+AGG + chr2_2:4315026-4315045 Msa0231980:CDS 50.0%
! GGCGGTGAATGCTTTAAGTG+TGG + chr2_2:4315056-4315075 Msa0231980:CDS 50.0%
GCACTCCCTTGCAAAATGAC+CGG - chr2_2:4315086-4315105 None:intergenic 50.0%
TGCCCTAGTGAAGGAGAAAG+AGG + chr2_2:4315103-4315122 Msa0231980:CDS 50.0%
CCTCCTCTTTCTCCTTCACT+AGG - chr2_2:4315109-4315128 None:intergenic 50.0%
CCTAGTGAAGGAGAAAGAGG+AGG + chr2_2:4315106-4315125 Msa0231980:CDS 50.0%
GTGAAGGAGAAAGAGGAGGA+AGG + chr2_2:4315110-4315129 Msa0231980:CDS 50.0%
GGAGAAAGAGGAGGAAGGTA+TGG + chr2_2:4315115-4315134 Msa0231980:CDS 50.0%
! GAAAGAGGAGGAAGGTATGG+TGG + chr2_2:4315118-4315137 Msa0231980:CDS 50.0%
GAGCGATCTGCATTCCTATC+AGG - chr2_2:4315175-4315194 None:intergenic 50.0%
TGCATGACAAAGGGGTGAGG+AGG - chr2_2:4311354-4311373 None:intergenic 55.0%
TGCGTGACAAAGGGGTGAGA+AGG - chr2_2:4311607-4311626 None:intergenic 55.0%
GACTATGCTGACCCGTGAGA+GGG - chr2_2:4311847-4311866 None:intergenic 55.0%
TGACTATGCTGACCCGTGAG+AGG - chr2_2:4311848-4311867 None:intergenic 55.0%
CTCACGGGTCAGCATAGTCA+AGG + chr2_2:4311848-4311867 Msa0231980:intron 55.0%
TATGAGTGTGGCACGTGCGA+TGG + chr2_2:4313123-4313142 Msa0231980:intron 55.0%
GAGAGAGAGAGAGAGAGAGG+CGG + chr2_2:4313200-4313219 Msa0231980:five_prime_UTR 55.0%
! GCTTCATTGGTGGCCTTGCA+TGG + chr2_2:4314035-4314054 Msa0231980:CDS 55.0%
!! CGGCAAGCTTGTTGAGGCAA+AGG + chr2_2:4314099-4314118 Msa0231980:CDS 55.0%
! TCTGGGCGTTCTCGTGGTTT+TGG + chr2_2:4314831-4314850 Msa0231980:CDS 55.0%
! CTGGGCGTTCTCGTGGTTTT+GGG + chr2_2:4314832-4314851 Msa0231980:CDS 55.0%
GATGATCGTCACCGAGAACG+TGG + chr2_2:4314975-4314994 Msa0231980:CDS 55.0%
GTGAGTCACGACCACGTTCT+CGG - chr2_2:4314989-4315008 None:intergenic 55.0%
GGAGGTAGTCGAGGGTCTAA+TGG + chr2_2:4315035-4315054 Msa0231980:CDS 55.0%
GGTAGTCGAGGGTCTAATGG+CGG + chr2_2:4315038-4315057 Msa0231980:CDS 55.0%
GTGGTGGCTATGGTCCTGAT+AGG + chr2_2:4315158-4315177 Msa0231980:CDS 55.0%
GGATTCTGGTGGTCGTGACA+GGG + chr2_2:4315213-4315232 Msa0231980:CDS 55.0%
!! GGATGGTGGTGGTCGTGATA+GGG + chr2_2:4315234-4315253 Msa0231980:CDS 55.0%
CCAGATCCACGACGCTCATA+CGG - chr2_2:4315361-4315380 None:intergenic 55.0%
! TATGAGCGTCGTGGATCTGG+AGG + chr2_2:4315361-4315380 Msa0231980:CDS 55.0%
!! GCAAGGGAGTGCCCTAGTGA+AGG + chr2_2:4315094-4315113 Msa0231980:CDS 60.0%
!! CTCTTATGGTGGGCGCGACA+GGG + chr2_2:4315192-4315211 Msa0231980:CDS 60.0%
GGGATTCTGGTGGTCGTGAC+AGG + chr2_2:4315212-4315231 Msa0231980:CDS 60.0%
TCTGGTGGTCGTGACAGGGA+TGG + chr2_2:4315217-4315236 Msa0231980:CDS 60.0%
!! GGGATGGTGGTGGTCGTGAT+AGG + chr2_2:4315233-4315252 Msa0231980:CDS 60.0%
! GGTGGTGGTCGTGATAGGGA+TGG + chr2_2:4315238-4315257 Msa0231980:CDS 60.0%
GGTGGTCGTGATAGGGATGG+CGG + chr2_2:4315241-4315260 Msa0231980:CDS 60.0%
! GGATGGCGGTGGTCGTGATA+GGG + chr2_2:4315255-4315274 Msa0231980:CDS 60.0%
GGTGGTCGTGATAGGGATGG+CGG + chr2_2:4315241-4315260 Msa0231980:CDS 60.0%
TGACAGGGATCGCGATCGTG+CGG + chr2_2:4315333-4315352 Msa0231980:CDS 60.0%
! CCGTATGAGCGTCGTGGATC+TGG + chr2_2:4315358-4315377 Msa0231980:CDS 60.0%
!! GCTCTTATGGTGGGCGCGAC+AGG + chr2_2:4315191-4315210 Msa0231980:CDS 65.0%
GGTGGTCGTGACAGGGATGG+TGG + chr2_2:4315220-4315239 Msa0231980:CDS 65.0%
! GGTCGTGACAGGGATGGTGG+TGG + chr2_2:4315223-4315242 Msa0231980:CDS 65.0%
! GGTCGTGATAGGGATGGCGG+TGG + chr2_2:4315244-4315263 Msa0231980:CDS 65.0%
! GGGATGGCGGTGGTCGTGAT+AGG + chr2_2:4315254-4315273 Msa0231980:CDS 65.0%
GGCGGTGGTCGTGATAGGGA+TGG + chr2_2:4315259-4315278 Msa0231980:CDS 65.0%
! GGTCGTGATAGGGATGGCGG+TGG + chr2_2:4315244-4315263 Msa0231980:CDS 65.0%
! GGATGGCGGTGGACGTGACA+GGG + chr2_2:4315276-4315295 Msa0231980:CDS 65.0%
GGTGGACGTGACAGGGATGG+CGG + chr2_2:4315283-4315302 Msa0231980:CDS 65.0%
! GACGTGACAGGGATGGCGGT+GGG + chr2_2:4315287-4315306 Msa0231980:CDS 65.0%
! GGCGTGACAGGGATGGTGGT+GGG + chr2_2:4315308-4315327 Msa0231980:CDS 65.0%
!! GGATGGTGGTGGGCGTGACA+GGG + chr2_2:4315318-4315337 Msa0231980:CDS 65.0%
GACAGGGATCGCGATCGTGC+GGG + chr2_2:4315334-4315353 Msa0231980:CDS 65.0%
GGTTGGACCCGTGCGTCGCA+CGG + chr2_2:4313072-4313091 Msa0231980:intron 70.0%
GTTGGACCCGTGCGTCGCAC+GGG + chr2_2:4313073-4313092 Msa0231980:intron 70.0%
CTGAAACAGGCGCGCGCGAC+CGG + chr2_2:4313226-4313245 Msa0231980:five_prime_UTR 70.0%
GGTGGGCGCGACAGGGATTC+TGG + chr2_2:4315199-4315218 Msa0231980:CDS 70.0%
GGGCGCGACAGGGATTCTGG+TGG + chr2_2:4315202-4315221 Msa0231980:CDS 70.0%
! GGGATGGCGGTGGACGTGAC+AGG + chr2_2:4315275-4315294 Msa0231980:CDS 70.0%
GGCGGTGGACGTGACAGGGA+TGG + chr2_2:4315280-4315299 Msa0231980:CDS 70.0%
! GGACGTGACAGGGATGGCGG+TGG + chr2_2:4315286-4315305 Msa0231980:CDS 70.0%
! GGATGGCGGTGGGCGTGACA+GGG + chr2_2:4315297-4315316 Msa0231980:CDS 70.0%
GGTGGGCGTGACAGGGATGG+TGG + chr2_2:4315304-4315323 Msa0231980:CDS 70.0%
! GGGCGTGACAGGGATGGTGG+TGG + chr2_2:4315307-4315326 Msa0231980:CDS 70.0%
!! GGGATGGTGGTGGGCGTGAC+AGG + chr2_2:4315317-4315336 Msa0231980:CDS 70.0%
! GCGGGACCGTATGAGCGTCG+TGG + chr2_2:4315352-4315371 Msa0231980:CDS 70.0%
! GGGATGGCGGTGGGCGTGAC+AGG + chr2_2:4315296-4315315 Msa0231980:CDS 75.0%
GGCGGTGGGCGTGACAGGGA+TGG + chr2_2:4315301-4315320 Msa0231980:CDS 75.0%
! GTGGGCGCGCGCGCGCGCAC+GGG - chr2_2:4309966-4309985 None:intergenic 90.0%
! GGTGGGCGCGCGCGCGCGCA+CGG - chr2_2:4309967-4309986 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 4309100 4315836 4309100 ID=Msa0231980;Name=Msa0231980
chr2_2 mRNA 4309100 4315836 4309100 ID=Msa0231980-mRNA-1;Parent=Msa0231980;Name=Msa0231980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=158|1|1|1|0.25|0.2|5|339|238
chr2_2 exon 4309100 4309138 4309100 ID=Msa0231980-mRNA-1:exon:1758;Parent=Msa0231980-mRNA-1
chr2_2 exon 4313189 4313301 4313189 ID=Msa0231980-mRNA-1:exon:1759;Parent=Msa0231980-mRNA-1
chr2_2 exon 4314004 4314120 4314004 ID=Msa0231980-mRNA-1:exon:1760;Parent=Msa0231980-mRNA-1
chr2_2 exon 4314813 4315412 4314813 ID=Msa0231980-mRNA-1:exon:1761;Parent=Msa0231980-mRNA-1
chr2_2 exon 4315492 4315836 4315492 ID=Msa0231980-mRNA-1:exon:1762;Parent=Msa0231980-mRNA-1
chr2_2 five_prime_UTR 4309100 4309138 4309100 ID=Msa0231980-mRNA-1:five_prime_utr;Parent=Msa0231980-mRNA-1
chr2_2 five_prime_UTR 4313189 4313301 4313189 ID=Msa0231980-mRNA-1:five_prime_utr;Parent=Msa0231980-mRNA-1
chr2_2 five_prime_UTR 4314004 4314009 4314004 ID=Msa0231980-mRNA-1:five_prime_utr;Parent=Msa0231980-mRNA-1
chr2_2 CDS 4314010 4314120 4314010 ID=Msa0231980-mRNA-1:cds;Parent=Msa0231980-mRNA-1
chr2_2 CDS 4314813 4315412 4314813 ID=Msa0231980-mRNA-1:cds;Parent=Msa0231980-mRNA-1
chr2_2 CDS 4315492 4315497 4315492 ID=Msa0231980-mRNA-1:cds;Parent=Msa0231980-mRNA-1
chr2_2 three_prime_UTR 4315498 4315836 4315498 ID=Msa0231980-mRNA-1:three_prime_utr;Parent=Msa0231980-mRNA-1
Gene Sequence

>Msa0231980

ATGTCGGATACGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACTTCTGATAGAAGATTAAAAGATGCATTTGAAAAGTACGGCAAGCTTGTTGAGGCAAAGGTGGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATTGACTTGGATGGACGGACTATTACTGTTGATAAAGCCCAACCACAAGGATCTAGAGATGATGATGATCGTCACCGAGAACGTGGTCGTGACTCACGTGATCGCAATCGTAGCCGAGATTATGGAGGTAGTCGAGGGTCTAATGGCGGTGAATGCTTTAAGTGTGGTAAACCGGTCATTTTGCAAGGGAGTGCCCTAGTGAAGGAGAAAGAGGAGGAAGGTATGGTGGCAGAGAAAGTAGATATAGTGGTGGCTATGGTCCTGATAGGAATGCAGATCGCTCTTATGGTGGGCGCGACAGGGATTCTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGATAGGGATGGCGGTGGTCGTGATAGGGATGGCGGTGGACGTGACAGGGATGGCGGTGGGCGTGACAGGGATGGTGGTGGGCGTGACAGGGATCGCGATCGTGCGGGACCGTATGAGCGTCGTGGATCTGGAGGCCATCGTTGATACCTCTAGCTTCATTGAGTTTTGA
Protein sequence

>Msa0231980

MSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSRDDDDRHRERGRDSRDRNRSRDYGGSRGSNGGECFKCGKPVILQGSALVKEKEEEGMVAEKVDIVVAMVLIGMQIALMVGATGILVVVTGMVVVVIGMAVVVIGMAVDVTGMAVGVTGMVVGVTGIAIVRDRMSVVDLEAIVDTSSFIEF*