AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1218500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218500 MtrunA17_Chr4g0068091 98.165 327 6 0 1 327 1 327 0.0 664
Msa1218500 MtrunA17_Chr2g0326331 82.787 122 18 2 142 262 1 120 7.93e-70 213
Msa1218500 MtrunA17_Chr2g0326341 54.198 131 24 3 1 131 1 95 8.23e-34 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218500 AT1G03360.1 65.749 327 104 3 1 326 3 322 7.24e-161 452

Find 102 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCCGTGAATTATCAAATT+TGG 0.168738 8_1:+81172303 Msa1218500:five_prime_UTR
TACGGTATTGATTTAATAAT+TGG 0.183259 8_1:+81177103 Msa1218500:CDS
TGCATCGTCTTCTGTTCTTA+TGG 0.184384 8_1:+81177752 Msa1218500:three_prime_UTR
TAAATAGCTCCATAAAATTT+TGG 0.206706 8_1:-81177863 None:intergenic
TTCTGCCTCTTCACTAAATA+TGG 0.233526 8_1:-81177055 None:intergenic
GTTAGAGTATTATCTACTTT+AGG 0.298550 8_1:+81177310 Msa1218500:CDS
AATCATGTTTGATACTTTGT+AGG 0.300249 8_1:+81177581 Msa1218500:three_prime_UTR
GCATCGTCTTCTGTTCTTAT+GGG 0.303890 8_1:+81177753 Msa1218500:three_prime_UTR
TCGATGGAGGAAAATGATTC+AGG 0.320541 8_1:-81172370 None:intergenic
CCTTGAGTACACCGTCTTCA+TGG 0.326377 8_1:-81172545 None:intergenic
ATTTAATAATTGGCTGTAAT+GGG 0.331979 8_1:+81177113 Msa1218500:CDS
TGGTTCCGAGTTCTGTGTTC+TGG 0.332549 8_1:+81177411 Msa1218500:CDS
TTGGCTGTAATGGGTTCATA+TGG 0.334973 8_1:+81177122 Msa1218500:CDS
GATTTAATAATTGGCTGTAA+TGG 0.340846 8_1:+81177112 Msa1218500:CDS
CAATACCGTACTGCTCTATA+TGG 0.346702 8_1:-81177090 None:intergenic
GAGGTTGGTGACATTGTTAT+TGG 0.373464 8_1:+81172833 Msa1218500:CDS
TGCTCAGAAGCGTTGGAGAT+TGG 0.380676 8_1:+81172956 Msa1218500:CDS
CTTGCACCTGCGGGGAGATG+TGG 0.409760 8_1:+81177648 Msa1218500:three_prime_UTR
AGGTTGGTGACATTGTTATT+GGG 0.422995 8_1:+81172834 Msa1218500:CDS
GTAATGGGTTCATATGGGTT+GGG 0.429426 8_1:+81177128 Msa1218500:CDS
TAGCTAGGGCACAGCTTCTT+CGG 0.431143 8_1:-81172343 None:intergenic
GTTAAAGCTCTTGCACCTGC+GGG 0.438119 8_1:+81177639 Msa1218500:three_prime_UTR
TGTCCAAATTTGATAATTCA+CGG 0.441543 8_1:-81172306 None:intergenic
ATCATGTTTGATACTTTGTA+GGG 0.444314 8_1:+81177582 Msa1218500:three_prime_UTR
ATGTCCGCGCTTTACGCTCA+AGG 0.446863 8_1:+81172646 Msa1218500:CDS
GTAGGGTGGCACTTAAAAGT+TGG 0.464300 8_1:+81177599 Msa1218500:three_prime_UTR
GTCTTCATGGTTGACGGGAA+TGG 0.468255 8_1:-81172532 None:intergenic
GTGTTATTGCAGCTTAGTAC+TGG 0.468619 8_1:+81177013 Msa1218500:intron
AAAAGACAGACATGGGTTGT+AGG 0.469764 8_1:-81177722 None:intergenic
GCCATGATTTAGTATACAAA+AGG 0.470847 8_1:-81177791 None:intergenic
AATGATTCAGGGTGGTAGCT+AGG 0.475270 8_1:-81172358 None:intergenic
ATGGTTGACGGGAATGGAAT+CGG 0.476761 8_1:-81172526 None:intergenic
TTGCACCTGCGGGGAGATGT+GGG 0.480487 8_1:+81177649 Msa1218500:three_prime_UTR
CAAAATACCTGTACACCATC+AGG 0.485161 8_1:-81173029 None:intergenic
TGTAATGGGTTCATATGGGT+TGG 0.507430 8_1:+81177127 Msa1218500:CDS
ATTTGATAATTCACGGCGCA+AGG 0.512690 8_1:-81172299 None:intergenic
AGACAAGAAAGTACATATGC+AGG 0.515241 8_1:+81177275 Msa1218500:CDS
TGTCCACAGGCTGAAGTTCG+TGG 0.517452 8_1:+81176573 Msa1218500:intron
TATAACATCGGAAATCATCA+AGG 0.519948 8_1:+81177339 Msa1218500:CDS
CGATGGAGGAAAATGATTCA+GGG 0.522107 8_1:-81172369 None:intergenic
GACGGGAATGGAATCGGCTA+TGG 0.522254 8_1:-81172520 None:intergenic
CCATGAAGACGGTGTACTCA+AGG 0.523112 8_1:+81172545 Msa1218500:CDS
TTAAAACCTGTGGATCAGAT+TGG 0.524228 8_1:-81177195 None:intergenic
ATGATTCAGGGTGGTAGCTA+GGG 0.532900 8_1:-81172357 None:intergenic
CCTGAAAAGCAAGGTGGCAA+CGG 0.534832 8_1:-81177693 None:intergenic
TGGAGCTATTTAAATTGTAG+TGG 0.536304 8_1:+81177874 Msa1218500:three_prime_UTR
CTTGATATACACGACATGCT+TGG 0.537424 8_1:+81177391 Msa1218500:CDS
TGTAGGTTGCTCAGAAGCGT+TGG 0.537717 8_1:+81172949 Msa1218500:intron
ACACCGTCTTCATGGTTGAC+GGG 0.544563 8_1:-81172537 None:intergenic
TGAAGCATCGGAATTGACCT+TGG 0.545099 8_1:-81172493 None:intergenic
CTTTCCACTGCTAGAGGCGA+AGG 0.547412 8_1:+81176421 Msa1218500:intron
TTTAGGATTCATTATAACAT+CGG 0.551488 8_1:+81177327 Msa1218500:CDS
TGTTATTGGGCGTGTCATTG+AGG 0.552525 8_1:+81172847 Msa1218500:CDS
GAACATGCCTGATGGTGTAC+AGG 0.553150 8_1:+81173022 Msa1218500:CDS
CTGAATCCCTCTCATGGCGG+TGG 0.554651 8_1:-81172403 None:intergenic
GTTCTAGAGCCTTCTGTAGA+CGG 0.559286 8_1:-81172452 None:intergenic
TGTTAAAGCTCTTGCACCTG+CGG 0.559542 8_1:+81177638 Msa1218500:three_prime_UTR
TAATGGGTTCATATGGGTTG+GGG 0.559641 8_1:+81177129 Msa1218500:CDS
AGTGAACCAATCTGATCCAC+AGG 0.562822 8_1:+81177189 Msa1218500:CDS
TCACACCATATTTAGTGAAG+AGG 0.571266 8_1:+81177050 Msa1218500:CDS
TTATTGGGAGTTAAAACCTG+TGG 0.572686 8_1:-81177205 None:intergenic
GGCTATGGTGACTGAAGCAT+CGG 0.574286 8_1:-81172505 None:intergenic
TACACCGTCTTCATGGTTGA+CGG 0.576605 8_1:-81172538 None:intergenic
CTCGACGACGCCACAGAGAG+TGG 0.577747 8_1:-81172604 None:intergenic
ATAACAATGTCACCAACCTC+AGG 0.577851 8_1:-81172830 None:intergenic
GGTAACCAGAACACAGAACT+CGG 0.579389 8_1:-81177416 None:intergenic
TCTGCTATGAACATGCCTGA+TGG 0.579601 8_1:+81173014 Msa1218500:CDS
TGGCTGTAATGGGTTCATAT+GGG 0.580058 8_1:+81177123 Msa1218500:CDS
TTCAGGTACAAACCTGAGGT+TGG 0.581754 8_1:+81172818 Msa1218500:intron
GTATATCAAGATTCGCAGAA+AGG 0.583884 8_1:-81177378 None:intergenic
CCTTGGAAGAGAGAGATTCG+AGG 0.584073 8_1:-81172476 None:intergenic
GACAAGAAAGTACATATGCA+GGG 0.586584 8_1:+81177276 Msa1218500:CDS
CTGTAACTGAATCCCTCTCA+TGG 0.591291 8_1:-81172409 None:intergenic
CGGTGGCTTAGTTCAATCGA+TGG 0.591951 8_1:-81172386 None:intergenic
AACTAAGCCACCGCCATGAG+AGG 0.593535 8_1:+81172396 Msa1218500:exon
CCTCGAATCTCTCTCTTCCA+AGG 0.597912 8_1:+81172476 Msa1218500:CDS
ATGTTTGATACTTTGTAGGG+TGG 0.604286 8_1:+81177585 Msa1218500:three_prime_UTR
TTCATCCCACATCTCCCCGC+AGG 0.604886 8_1:-81177654 None:intergenic
GGTGGCACTTAAAAGTTGGA+TGG 0.605315 8_1:+81177603 Msa1218500:three_prime_UTR
TCAGAAACTCCGTCTACAGA+AGG 0.607305 8_1:+81172443 Msa1218500:CDS
TACCGTACTGCTCTATATGG+TGG 0.611910 8_1:-81177087 None:intergenic
ACTAAGCCACCGCCATGAGA+GGG 0.616486 8_1:+81172397 Msa1218500:exon
CACGGAACCGCTGACCTCGA+GGG 0.617843 8_1:+81172570 Msa1218500:CDS
GAAGTTGTTGCCACTCTCTG+TGG 0.627055 8_1:+81172594 Msa1218500:CDS
AACTTCGCCCTCGAGGTCAG+CGG 0.630661 8_1:-81172577 None:intergenic
ACACGGAACCGCTGACCTCG+AGG 0.633573 8_1:+81172569 Msa1218500:CDS
TGTTGAAGTCAGAGATGACA+TGG 0.636734 8_1:+81177156 Msa1218500:CDS
CATGAAGACGGTGTACTCAA+GGG 0.637304 8_1:+81172546 Msa1218500:CDS
TAATTTCAGGTACAAACCTG+AGG 0.641535 8_1:+81172814 Msa1218500:intron
ATTCCCGTCAACCATGAAGA+CGG 0.643895 8_1:+81172534 Msa1218500:CDS
AGCGGTAGATTGTGAAATCG+TGG 0.646556 8_1:+81177476 Msa1218500:exon
ATTACCTTGAGCGTAAAGCG+CGG 0.649059 8_1:-81172650 None:intergenic
ATAACATCGGAAATCATCAA+GGG 0.651590 8_1:+81177340 Msa1218500:CDS
GACGGTGTACTCAAGGGACA+CGG 0.652374 8_1:+81172552 Msa1218500:CDS
TGGCAACAACTTCGCCCTCG+AGG 0.655283 8_1:-81172584 None:intergenic
AGGTGTCACCCTGAAAAGCA+AGG 0.671719 8_1:-81177702 None:intergenic
TGGCTTAGTTCAATCGATGG+AGG 0.676802 8_1:-81172383 None:intergenic
TTCCACCATATAGAGCAGTA+CGG 0.679178 8_1:+81177085 Msa1218500:CDS
TTAAAGCTCTTGCACCTGCG+GGG 0.692107 8_1:+81177640 Msa1218500:three_prime_UTR
TAACTGAATCCCTCTCATGG+CGG 0.742399 8_1:-81172406 None:intergenic
TGGAGGAAAATGATTCAGGG+TGG 0.749960 8_1:-81172366 None:intergenic
TGTCACCCTGAAAAGCAAGG+TGG 0.777879 8_1:-81177699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATTTCTTAAAGAAA+TGG - chr8_1:81173134-81173153 None:intergenic 10.0%
!! AATTCAATTTAAACAAAAAT+TGG - chr8_1:81175666-81175685 None:intergenic 10.0%
!!! AATTTTTGTTTAAATTGAAT+TGG + chr8_1:81175665-81175684 Msa1218500:intron 10.0%
!! AAACAAAAACATAACAATTA+AGG - chr8_1:81172774-81172793 None:intergenic 15.0%
!!! TTATTGAATGTAATTTTCAT+GGG - chr8_1:81173491-81173510 None:intergenic 15.0%
!!! TTTATTGAATGTAATTTTCA+TGG - chr8_1:81173492-81173511 None:intergenic 15.0%
!! ATAAAGATATTATGAAGTAT+AGG + chr8_1:81173507-81173526 Msa1218500:intron 15.0%
!! TTAAAAATTAAAGGCAATAT+GGG - chr8_1:81173871-81173890 None:intergenic 15.0%
!! TTTAAAAATTAAAGGCAATA+TGG - chr8_1:81173872-81173891 None:intergenic 15.0%
!! CAATAACGTTTAAAAATTAA+AGG - chr8_1:81173880-81173899 None:intergenic 15.0%
!!! AATTAAAAGTGATTTTGTAA+TGG + chr8_1:81174320-81174339 Msa1218500:intron 15.0%
!! TGAATTAAATAAACAAGTAA+TGG - chr8_1:81175041-81175060 None:intergenic 15.0%
!!! TTAAGATTTACTTTTTATGA+AGG + chr8_1:81176520-81176539 Msa1218500:intron 15.0%
!!! CAATAAAAGAATGTTTTAAA+AGG - chr8_1:81176668-81176687 None:intergenic 15.0%
!!! GTTATGTTTTTGTTTGTTAA+TGG + chr8_1:81172779-81172798 Msa1218500:intron 20.0%
!! ATCAAATCAAATTCAGAAAA+TGG - chr8_1:81172893-81172912 None:intergenic 20.0%
!!! TAATGTTTGTTTAATTTCAC+TGG + chr8_1:81172912-81172931 Msa1218500:intron 20.0%
!! AAAAAAAGATATCTGCATAA+GGG - chr8_1:81173061-81173080 None:intergenic 20.0%
!! AAAAAAAAGATATCTGCATA+AGG - chr8_1:81173062-81173081 None:intergenic 20.0%
!!! AGTTATTTTTCAGAAATGAA+AGG + chr8_1:81173160-81173179 Msa1218500:intron 20.0%
!!! ATTAAACACTTTTTCATCTA+GGG - chr8_1:81173408-81173427 None:intergenic 20.0%
!!! AATTAAACACTTTTTCATCT+AGG - chr8_1:81173409-81173428 None:intergenic 20.0%
!!! TACATTTAAAACTATATGAC+AGG - chr8_1:81173435-81173454 None:intergenic 20.0%
!!! TATTGAATGTAATTTTCATG+GGG - chr8_1:81173490-81173509 None:intergenic 20.0%
!! TTAAACGTTATTGAGTATTA+TGG + chr8_1:81173887-81173906 Msa1218500:intron 20.0%
!! TAAACGTTATTGAGTATTAT+GGG + chr8_1:81173888-81173907 Msa1218500:intron 20.0%
!! TACATCAAAAATCCAAAAAT+AGG - chr8_1:81173999-81174018 None:intergenic 20.0%
!!! AAACTTGCAATATTTTATTC+AGG - chr8_1:81174252-81174271 None:intergenic 20.0%
!! AAATGTCAACATTAAATCAA+CGG - chr8_1:81175257-81175276 None:intergenic 20.0%
!!! ATGGTTTTGTAATTTGTTAT+TGG - chr8_1:81175476-81175495 None:intergenic 20.0%
!! ATACTTTGTTAATAACAAGA+TGG - chr8_1:81175495-81175514 None:intergenic 20.0%
!! TAATTCACAATAGTGAAATT+GGG - chr8_1:81175627-81175646 None:intergenic 20.0%
!! TTAATTCACAATAGTGAAAT+TGG - chr8_1:81175628-81175647 None:intergenic 20.0%
!! TTTAAACAAAAATTGGCAAT+AGG - chr8_1:81175659-81175678 None:intergenic 20.0%
!!! TAAATTTTATCGAATGAGAT+TGG + chr8_1:81175701-81175720 Msa1218500:intron 20.0%
!! TTGATGTTATATAACAAAGT+AGG + chr8_1:81175817-81175836 Msa1218500:intron 20.0%
!! ATGCAATTGTAAAACAATTA+TGG + chr8_1:81176221-81176240 Msa1218500:intron 20.0%
!!! GTTTTTATAAGCACAAAAAT+AGG + chr8_1:81176276-81176295 Msa1218500:intron 20.0%
!! GAAAGAAAAAATCTAAATGA+GGG - chr8_1:81176406-81176425 None:intergenic 20.0%
!! AAAGTAAATCTTAAGAAACA+TGG - chr8_1:81176514-81176533 None:intergenic 20.0%
!! CTACAAAAAAAAATGATAGT+CGG + chr8_1:81176708-81176727 Msa1218500:intron 20.0%
!! CTTACAAATATAAAACTGAA+CGG + chr8_1:81176796-81176815 Msa1218500:intron 20.0%
!!! TTACTTTATTTTGATAGCTA+TGG + chr8_1:81176875-81176894 Msa1218500:intron 20.0%
!!! TTGTATTTTGTAATACGTTT+TGG + chr8_1:81176928-81176947 Msa1218500:intron 20.0%
!!! TGTATTTTGTAATACGTTTT+GGG + chr8_1:81176929-81176948 Msa1218500:intron 20.0%
!!! TACGGTATTGATTTAATAAT+TGG + chr8_1:81177103-81177122 Msa1218500:CDS 20.0%
!! ATTTAATAATTGGCTGTAAT+GGG + chr8_1:81177113-81177132 Msa1218500:CDS 20.0%
!!! TTTAGGATTCATTATAACAT+CGG + chr8_1:81177327-81177346 Msa1218500:CDS 20.0%
!!! TTTTTCTTTCATTGTAAACT+CGG + chr8_1:81177839-81177858 Msa1218500:three_prime_UTR 20.0%
!!! TAAATAGCTCCATAAAATTT+TGG - chr8_1:81177866-81177885 None:intergenic 20.0%
!! TGTCCAAATTTGATAATTCA+CGG - chr8_1:81172309-81172328 None:intergenic 25.0%
! AAACATAACAATTAAGGAAG+TGG - chr8_1:81172768-81172787 None:intergenic 25.0%
!!! CTTTTTTTTTGTTCTGCAAT+CGG + chr8_1:81173073-81173092 Msa1218500:intron 25.0%
!!! CCTAAATTTTGAAAAAGGAA+CGG - chr8_1:81173110-81173129 None:intergenic 25.0%
!!! ATGGTCCTAAATTTTGAAAA+AGG - chr8_1:81173115-81173134 None:intergenic 25.0%
!! ACGAGACAAAATTTTCAATT+TGG + chr8_1:81173590-81173609 Msa1218500:intron 25.0%
! AAACGTTATTGAGTATTATG+GGG + chr8_1:81173889-81173908 Msa1218500:intron 25.0%
! ATCAAAAATCCAAAAATAGG+AGG - chr8_1:81173996-81174015 None:intergenic 25.0%
! TTTGTAATGAAACACTAAAC+TGG - chr8_1:81174084-81174103 None:intergenic 25.0%
!! TGCAAAATTTCTACAGTTTT+AGG + chr8_1:81174216-81174235 Msa1218500:intron 25.0%
!!! GTGATCTATTTTTATTGGTT+GGG + chr8_1:81174388-81174407 Msa1218500:intron 25.0%
!!! TGATCTATTTTTATTGGTTG+GGG + chr8_1:81174389-81174408 Msa1218500:intron 25.0%
! AAGACTATTGATATCTAAGA+AGG + chr8_1:81174552-81174571 Msa1218500:intron 25.0%
! ACAATTATATGACAAGTACA+AGG + chr8_1:81174714-81174733 Msa1218500:intron 25.0%
! TTAACCAATGTTTCATCAAT+AGG + chr8_1:81174974-81174993 Msa1218500:intron 25.0%
! ATCATATACCAAGTAATAGA+AGG + chr8_1:81175060-81175079 Msa1218500:intron 25.0%
! TAATGTTGACATTTGAGAAA+AGG + chr8_1:81175263-81175282 Msa1218500:intron 25.0%
! AATGTTGACATTTGAGAAAA+GGG + chr8_1:81175264-81175283 Msa1218500:intron 25.0%
!! AATGGCATTTTGCAATAATA+GGG - chr8_1:81175371-81175390 None:intergenic 25.0%
!!! TTGTAATTTGTTATTGGATG+TGG - chr8_1:81175470-81175489 None:intergenic 25.0%
!! TGTATCACTCTTTGATTTAT+AGG - chr8_1:81175579-81175598 None:intergenic 25.0%
! TATTGATCAAAGTAACAGTT+GGG + chr8_1:81175600-81175619 Msa1218500:intron 25.0%
!! AAGATCCAAAATTTTACTAG+AGG - chr8_1:81175790-81175809 None:intergenic 25.0%
!! TAATGCTTTAAGTCCAATTA+GGG - chr8_1:81176010-81176029 None:intergenic 25.0%
!! ATAATGCTTTAAGTCCAATT+AGG - chr8_1:81176011-81176030 None:intergenic 25.0%
! TTCAAAGAAACTAATAGAAC+AGG + chr8_1:81176182-81176201 Msa1218500:intron 25.0%
! TCAAAGAAACTAATAGAACA+GGG + chr8_1:81176183-81176202 Msa1218500:intron 25.0%
! TGTGCTTATAAAAACTTCAA+AGG - chr8_1:81176271-81176290 None:intergenic 25.0%
! GGAAAGAAAAAATCTAAATG+AGG - chr8_1:81176407-81176426 None:intergenic 25.0%
! AAGAAGTCAAAAATATGGAA+AGG + chr8_1:81176626-81176645 Msa1218500:CDS 25.0%
! AATGGAAACTCTAAATCATA+TGG + chr8_1:81176764-81176783 Msa1218500:intron 25.0%
! ATGGAAACTCTAAATCATAT+GGG + chr8_1:81176765-81176784 Msa1218500:intron 25.0%
! GATTTAATAATTGGCTGTAA+TGG + chr8_1:81177112-81177131 Msa1218500:CDS 25.0%
!! AGACTCACAGAATTTTTATT+GGG - chr8_1:81177223-81177242 None:intergenic 25.0%
!! AAGACTCACAGAATTTTTAT+TGG - chr8_1:81177224-81177243 None:intergenic 25.0%
!! GTTAGAGTATTATCTACTTT+AGG + chr8_1:81177310-81177329 Msa1218500:CDS 25.0%
! AATCATGTTTGATACTTTGT+AGG + chr8_1:81177581-81177600 Msa1218500:three_prime_UTR 25.0%
! ATCATGTTTGATACTTTGTA+GGG + chr8_1:81177582-81177601 Msa1218500:three_prime_UTR 25.0%
!! TCCTTTTGTATACTAAATCA+TGG + chr8_1:81177790-81177809 Msa1218500:three_prime_UTR 25.0%
GAATCTTGTGACTTAATTTC+AGG + chr8_1:81172801-81172820 Msa1218500:intron 30.0%
!!! CCGTTCCTTTTTCAAAATTT+AGG + chr8_1:81173107-81173126 Msa1218500:intron 30.0%
!!! AGGCGTAGTCATTTTTAATT+TGG + chr8_1:81173381-81173400 Msa1218500:intron 30.0%
GGGTTACAATAGTTAATAAC+AGG - chr8_1:81173470-81173489 None:intergenic 30.0%
! ACATGACAGTCTTTTCAATT+TGG - chr8_1:81173535-81173554 None:intergenic 30.0%
TTGAAAAGACTGTCATGTTT+AGG + chr8_1:81173537-81173556 Msa1218500:intron 30.0%
TGAAAAGACTGTCATGTTTA+GGG + chr8_1:81173538-81173557 Msa1218500:intron 30.0%
CAGCTACTTCTTCAAAAAAT+TGG - chr8_1:81174031-81174050 None:intergenic 30.0%
!!! TTCTACAGTTTTAGGAGTAA+AGG + chr8_1:81174224-81174243 Msa1218500:intron 30.0%
ATATTGCAAGTTTGTGTGTT+AGG + chr8_1:81174259-81174278 Msa1218500:intron 30.0%
!!! TAAGGTGGATTTTGAGTTTT+TGG + chr8_1:81174362-81174381 Msa1218500:intron 30.0%
!!! AAGGTGGATTTTGAGTTTTT+GGG + chr8_1:81174363-81174382 Msa1218500:intron 30.0%
!!! GGTGATCTATTTTTATTGGT+TGG + chr8_1:81174387-81174406 Msa1218500:intron 30.0%
AGTTATTGAGCTTATGCTAT+TGG + chr8_1:81174427-81174446 Msa1218500:intron 30.0%
! CTTAGATATCAATAGTCTTG+TGG - chr8_1:81174551-81174570 None:intergenic 30.0%
CTATTGATATCTAAGAAGGA+TGG + chr8_1:81174556-81174575 Msa1218500:intron 30.0%
GTAATGACTAAATTAGCAGT+CGG - chr8_1:81174686-81174705 None:intergenic 30.0%
CTTCTTATCCTTCTATTACT+TGG - chr8_1:81175071-81175090 None:intergenic 30.0%
! CAATGGCATTTTGCAATAAT+AGG - chr8_1:81175372-81175391 None:intergenic 30.0%
! GTATTGATCAAAGTAACAGT+TGG + chr8_1:81175599-81175618 Msa1218500:intron 30.0%
!! TATCGAATGAGATTGGTTTA+AGG + chr8_1:81175708-81175727 Msa1218500:intron 30.0%
! TAGGACCTCTAGTAAAATTT+TGG + chr8_1:81175782-81175801 Msa1218500:intron 30.0%
TATGACCTGAATTGTGTATT+TGG + chr8_1:81176032-81176051 Msa1218500:intron 30.0%
TAAGCACAAAAATAGGAACA+AGG + chr8_1:81176283-81176302 Msa1218500:intron 30.0%
!!! AATCACCTTCAGTTTTGATT+GGG + chr8_1:81176309-81176328 Msa1218500:intron 30.0%
! TATATGCTGCGTCATATTTT+TGG + chr8_1:81176353-81176372 Msa1218500:intron 30.0%
!! AGGGATTTTCAAGCTTAATT+GGG - chr8_1:81176387-81176406 None:intergenic 30.0%
!! AAATATGCGCTGTATTTTTG+AGG + chr8_1:81176461-81176480 Msa1218500:CDS 30.0%
!!! ATTTTTGACTTCTTGCTTGA+AGG - chr8_1:81176620-81176639 None:intergenic 30.0%
CAAGCAAGAAGTCAAAAATA+TGG + chr8_1:81176621-81176640 Msa1218500:CDS 30.0%
TATGGAAAGGTTTGTATTCT+TGG + chr8_1:81176639-81176658 Msa1218500:intron 30.0%
CCATTAGTAACAGTAGTAAA+TGG - chr8_1:81176987-81177006 None:intergenic 30.0%
CCATTTACTACTGTTACTAA+TGG + chr8_1:81176984-81177003 Msa1218500:intron 30.0%
! AGAACAAGAGAAAAAGTACA+CGG + chr8_1:81177246-81177265 Msa1218500:CDS 30.0%
TATAACATCGGAAATCATCA+AGG + chr8_1:81177339-81177358 Msa1218500:CDS 30.0%
ATAACATCGGAAATCATCAA+GGG + chr8_1:81177340-81177359 Msa1218500:CDS 30.0%
GAAGCTCAAATAAAAAGAAG+CGG + chr8_1:81177458-81177477 Msa1218500:CDS 30.0%
!!! AAGTTTTATTATCCCTTTGC+CGG + chr8_1:81177509-81177528 Msa1218500:three_prime_UTR 30.0%
CAAAAACAAAAGACAGACAT+GGG - chr8_1:81177732-81177751 None:intergenic 30.0%
ACAAAAACAAAAGACAGACA+TGG - chr8_1:81177733-81177752 None:intergenic 30.0%
GCCATGATTTAGTATACAAA+AGG - chr8_1:81177794-81177813 None:intergenic 30.0%
! AAACTCGGACCAAAATTTTA+TGG + chr8_1:81177854-81177873 Msa1218500:three_prime_UTR 30.0%
TGGAGCTATTTAAATTGTAG+TGG + chr8_1:81177874-81177893 Msa1218500:three_prime_UTR 30.0%
TAACAATTAAGGAAGTGGAG+AGG - chr8_1:81172763-81172782 None:intergenic 35.0%
! TAATTTCAGGTACAAACCTG+AGG + chr8_1:81172814-81172833 Msa1218500:intron 35.0%
!! AGGTTGGTGACATTGTTATT+GGG + chr8_1:81172834-81172853 Msa1218500:CDS 35.0%
ACAAAAACTAGTTCAGTGTG+CGG + chr8_1:81173190-81173209 Msa1218500:intron 35.0%
ACTATAGTCAAATAACCTCC+AGG - chr8_1:81173300-81173319 None:intergenic 35.0%
! TGTGTTTCTTTTCTCTATGC+AGG + chr8_1:81173361-81173380 Msa1218500:intron 35.0%
TATCACCACTTCTAAATGTC+AGG - chr8_1:81173617-81173636 None:intergenic 35.0%
CCATTTGTAGTGACTTTGTT+CGG + chr8_1:81174109-81174128 Msa1218500:intron 35.0%
TTTGTGTGTTAGGTTTCCTT+TGG + chr8_1:81174269-81174288 Msa1218500:intron 35.0%
TTGTGTGTTAGGTTTCCTTT+GGG + chr8_1:81174270-81174289 Msa1218500:intron 35.0%
!!! GGGTGGTGATCTATTTTTAT+TGG + chr8_1:81174383-81174402 Msa1218500:intron 35.0%
! TAGTCTTTAGAGGTAAAGTG+CGG - chr8_1:81174628-81174647 None:intergenic 35.0%
! CTTTACCTCTAAAGACTACA+TGG + chr8_1:81174630-81174649 Msa1218500:intron 35.0%
TATCACCATGTAGTCTTTAG+AGG - chr8_1:81174638-81174657 None:intergenic 35.0%
TCTTTCTTTCTTCGCAAAGA+TGG - chr8_1:81174775-81174794 None:intergenic 35.0%
TTCTGAGCAATTCTCTTAAC+AGG - chr8_1:81175197-81175216 None:intergenic 35.0%
! TAAAAAACTTTGAGAGCCGA+CGG - chr8_1:81174852-81174871 None:intergenic 35.0%
! GTTTCTTTAAGAGAAGGAAG+TGG - chr8_1:81174907-81174926 None:intergenic 35.0%
CTTCCTTCTCTTAAAGAAAC+TGG + chr8_1:81174907-81174926 Msa1218500:intron 35.0%
! AAGCCAGTTTCTTTAAGAGA+AGG - chr8_1:81174913-81174932 None:intergenic 35.0%
AGAGCCTATTGATGAAACAT+TGG - chr8_1:81174981-81175000 None:intergenic 35.0%
AAGCCAATTTCTTGAAGAGA+AGG + chr8_1:81175088-81175107 Msa1218500:intron 35.0%
CTTCCTTCTCTTCAAGAAAT+TGG - chr8_1:81175094-81175113 None:intergenic 35.0%
TAAGAGAATTGCTCAGAAGA+TGG - chr8_1:81174806-81174825 None:intergenic 35.0%
TCTTTCTTTCCTCGTAAAGA+TGG + chr8_1:81175226-81175245 Msa1218500:intron 35.0%
TGCAAATGGGAGTTATTTGA+TGG + chr8_1:81175323-81175342 Msa1218500:intron 35.0%
TGCCATTGAAATTCAGAAGT+TGG + chr8_1:81175384-81175403 Msa1218500:intron 35.0%
CTCCAACTTCTGAATTTCAA+TGG - chr8_1:81175389-81175408 None:intergenic 35.0%
TTCAGAAGTTGGAGATATAG+TGG + chr8_1:81175395-81175414 Msa1218500:intron 35.0%
!! AATGAGATTGGTTTAAGGTC+TGG + chr8_1:81175713-81175732 Msa1218500:intron 35.0%
!! ATGAGATTGGTTTAAGGTCT+GGG + chr8_1:81175714-81175733 Msa1218500:intron 35.0%
! CAGTGTTTGGCTTAAAATTC+TGG + chr8_1:81175738-81175757 Msa1218500:intron 35.0%
! TTTGGCTTAAAATTCTGGTC+TGG + chr8_1:81175743-81175762 Msa1218500:intron 35.0%
TTGGCTTAAAATTCTGGTCT+GGG + chr8_1:81175744-81175763 Msa1218500:intron 35.0%
!!! CCTTTTTTTTAGCTCGTGTT+CGG - chr8_1:81175897-81175916 None:intergenic 35.0%
CCAAACCAAATACACAATTC+AGG - chr8_1:81176040-81176059 None:intergenic 35.0%
CCTGAATTGTGTATTTGGTT+TGG + chr8_1:81176037-81176056 Msa1218500:intron 35.0%
! TGGTTTGGATCAACATTTGA+TGG + chr8_1:81176052-81176071 Msa1218500:intron 35.0%
!! TGAAGTGGGTATACTGATTT+AGG + chr8_1:81176094-81176113 Msa1218500:intron 35.0%
TGATTAGTGTTTCTTCATGC+AGG - chr8_1:81176134-81176153 None:intergenic 35.0%
AAACTAATAGAACAGGGTGA+GGG + chr8_1:81176189-81176208 Msa1218500:intron 35.0%
!! CAATCACCTTCAGTTTTGAT+TGG + chr8_1:81176308-81176327 Msa1218500:intron 35.0%
AGAAACCCAATCAAAACTGA+AGG - chr8_1:81176317-81176336 None:intergenic 35.0%
!! GAGGGATTTTCAAGCTTAAT+TGG - chr8_1:81176388-81176407 None:intergenic 35.0%
!!! TTTTTTCTTTCCACTGCTAG+AGG + chr8_1:81176415-81176434 Msa1218500:intron 35.0%
ATTACACCTCAATCGTAAAC+AGG - chr8_1:81176832-81176851 None:intergenic 35.0%
TCACACCATATTTAGTGAAG+AGG + chr8_1:81177050-81177069 Msa1218500:CDS 35.0%
TTCTGCCTCTTCACTAAATA+TGG - chr8_1:81177058-81177077 None:intergenic 35.0%
TTAAAACCTGTGGATCAGAT+TGG - chr8_1:81177198-81177217 None:intergenic 35.0%
TTATTGGGAGTTAAAACCTG+TGG - chr8_1:81177208-81177227 None:intergenic 35.0%
GTATATCAAGATTCGCAGAA+AGG - chr8_1:81177381-81177400 None:intergenic 35.0%
!!! AGTTTTATTATCCCTTTGCC+GGG + chr8_1:81177510-81177529 Msa1218500:three_prime_UTR 35.0%
!!! TTCCTTTCCTATTTTTACCC+CGG - chr8_1:81177531-81177550 None:intergenic 35.0%
ATGTTTGATACTTTGTAGGG+TGG + chr8_1:81177585-81177604 Msa1218500:three_prime_UTR 35.0%
!! GGATGAAGTGTTTTTCTGAT+TGG + chr8_1:81177670-81177689 Msa1218500:three_prime_UTR 35.0%
! ATTTGATAATTCACGGCGCA+AGG - chr8_1:81172302-81172321 None:intergenic 40.0%
GCGCCGTGAATTATCAAATT+TGG + chr8_1:81172303-81172322 Msa1218500:five_prime_UTR 40.0%
CGATGGAGGAAAATGATTCA+GGG - chr8_1:81172372-81172391 None:intergenic 40.0%
TCGATGGAGGAAAATGATTC+AGG - chr8_1:81172373-81172392 None:intergenic 40.0%
GCTGCATAGGTTAAGAAGTA+AGG - chr8_1:81172679-81172698 None:intergenic 40.0%
ATAACAATGTCACCAACCTC+AGG - chr8_1:81172833-81172852 None:intergenic 40.0%
!! GAGGTTGGTGACATTGTTAT+TGG + chr8_1:81172833-81172852 Msa1218500:CDS 40.0%
CAAAATACCTGTACACCATC+AGG - chr8_1:81173032-81173051 None:intergenic 40.0%
! TTGTTGACCTTGTTTCATCC+TGG + chr8_1:81173279-81173298 Msa1218500:intron 40.0%
ATAACCTCCAGGATGAAACA+AGG - chr8_1:81173289-81173308 None:intergenic 40.0%
TTGGTCCTGACATTTAGAAG+TGG + chr8_1:81173609-81173628 Msa1218500:intron 40.0%
TTGTACAGCTGTATGCATCT+TGG + chr8_1:81173683-81173702 Msa1218500:intron 40.0%
! ATCTTGGTAGTCAATAGCAG+TGG + chr8_1:81173699-81173718 Msa1218500:intron 40.0%
!! GTTTGGTGCAGCTCATATTA+AGG + chr8_1:81173773-81173792 Msa1218500:intron 40.0%
ACGAAGGAGAGAAGAATACT+GGG - chr8_1:81173930-81173949 None:intergenic 40.0%
! AGCTTCATGCCTCCTATTTT+TGG + chr8_1:81173984-81174003 Msa1218500:intron 40.0%
CCGAACAAAGTCACTACAAA+TGG - chr8_1:81174112-81174131 None:intergenic 40.0%
CTTTGTCGTGTTCTCTAGTT+AGG + chr8_1:81174134-81174153 Msa1218500:intron 40.0%
TCGTGTTCTCTAGTTAGGAA+GGG + chr8_1:81174139-81174158 Msa1218500:intron 40.0%
!!! GGGGGAAGTTATTGGTTTTT+TGG + chr8_1:81174159-81174178 Msa1218500:intron 40.0%
TTACACTAGACCATGTTGAG+AGG + chr8_1:81174191-81174210 Msa1218500:intron 40.0%
! ATTTTGCAAGCCTCTCAACA+TGG - chr8_1:81174204-81174223 None:intergenic 40.0%
TTTCCTTTGGGTGGATGAAT+TGG + chr8_1:81174282-81174301 Msa1218500:intron 40.0%
GTGACCATGTGAAAGTAGTA+AGG + chr8_1:81174344-81174363 Msa1218500:intron 40.0%
ACCATGTGAAAGTAGTAAGG+TGG + chr8_1:81174347-81174366 Msa1218500:intron 40.0%
TCCACCTTACTACTTTCACA+TGG - chr8_1:81174351-81174370 None:intergenic 40.0%
!!! GTGGATTTTGAGTTTTTGGG+TGG + chr8_1:81174366-81174385 Msa1218500:intron 40.0%
AGAAGGATGGTCTATTATCC+AGG + chr8_1:81174569-81174588 Msa1218500:intron 40.0%
AATGTTCTCGAGCTTCTTGA+AGG - chr8_1:81174598-81174617 None:intergenic 40.0%
! AAAAAACTTTGAGAGCCGAC+GGG - chr8_1:81174851-81174870 None:intergenic 40.0%
ATTGGGATACGGTTTCTATC+AGG - chr8_1:81174880-81174899 None:intergenic 40.0%
GAAGTGGATGTATTGGGATA+CGG - chr8_1:81174891-81174910 None:intergenic 40.0%
GAGAAGGAAGTGGATGTATT+GGG - chr8_1:81174897-81174916 None:intergenic 40.0%
AGAGAAGGAAGTGGATGTAT+TGG - chr8_1:81174898-81174917 None:intergenic 40.0%
TGTTTCATCAATAGGCTCTC+TGG + chr8_1:81174982-81175001 Msa1218500:intron 40.0%
!! GAGAAGGAAGTTGATGTCTT+CGG + chr8_1:81175104-81175123 Msa1218500:intron 40.0%
!! AGAAGGAAGTTGATGTCTTC+GGG + chr8_1:81175105-81175124 Msa1218500:intron 40.0%
CATGTCCTCTCTTTGTGATT+TGG + chr8_1:81175169-81175188 Msa1218500:intron 40.0%
TGACATTTGAGAAAAGGGAG+TGG + chr8_1:81175269-81175288 Msa1218500:intron 40.0%
GACATTTGAGAAAAGGGAGT+GGG + chr8_1:81175270-81175289 Msa1218500:intron 40.0%
TGTTGTGAGGCTATTGCAAA+TGG + chr8_1:81175309-81175328 Msa1218500:intron 40.0%
GTTGTGAGGCTATTGCAAAT+GGG + chr8_1:81175310-81175329 Msa1218500:intron 40.0%
AGAAGTTGGAGATATAGTGG+AGG + chr8_1:81175398-81175417 Msa1218500:intron 40.0%
TAGTGGAGGCTTATGTTACT+TGG + chr8_1:81175412-81175431 Msa1218500:intron 40.0%
! TGTTTTCACATGTGCCACAT+CGG + chr8_1:81175523-81175542 Msa1218500:intron 40.0%
!! TGAGATTGGTTTAAGGTCTG+GGG + chr8_1:81175715-81175734 Msa1218500:intron 40.0%
CCGAACACGAGCTAAAAAAA+AGG + chr8_1:81175894-81175913 Msa1218500:intron 40.0%
! CGACTCGACTCGTTAAAAAT+TGG - chr8_1:81175949-81175968 None:intergenic 40.0%
! CAGATGAGTTCGATTTGACT+CGG + chr8_1:81175973-81175992 Msa1218500:intron 40.0%
GAAACTAATAGAACAGGGTG+AGG + chr8_1:81176188-81176207 Msa1218500:intron 40.0%
AACTAATAGAACAGGGTGAG+GGG + chr8_1:81176190-81176209 Msa1218500:intron 40.0%
!! TATGCGCTGTATTTTTGAGG+AGG + chr8_1:81176464-81176483 Msa1218500:CDS 40.0%
! GCAGATGTCATTTGTGTAAG+TGG + chr8_1:81176486-81176505 Msa1218500:intron 40.0%
CCTGTGGACATACATAGTTT+AGG - chr8_1:81176563-81176582 None:intergenic 40.0%
CCTAAACTATGTATGTCCAC+AGG + chr8_1:81176560-81176579 Msa1218500:intron 40.0%
! CATTTTGTACTGTCTCTGAC+CGG - chr8_1:81176748-81176767 None:intergenic 40.0%
GAACTACCTGTTTACGATTG+AGG + chr8_1:81176823-81176842 Msa1218500:intron 40.0%
AATGCAAGATTCCTGGAATC+AGG + chr8_1:81176849-81176868 Msa1218500:intron 40.0%
ATGCAAGATTCCTGGAATCA+GGG + chr8_1:81176850-81176869 Msa1218500:intron 40.0%
GCACTTGTAGTGATTGTGTA+TGG + chr8_1:81176897-81176916 Msa1218500:intron 40.0%
! GTGTTATTGCAGCTTAGTAC+TGG + chr8_1:81177013-81177032 Msa1218500:intron 40.0%
TTCCACCATATAGAGCAGTA+CGG + chr8_1:81177085-81177104 Msa1218500:CDS 40.0%
CAATACCGTACTGCTCTATA+TGG - chr8_1:81177093-81177112 None:intergenic 40.0%
!! TTGGCTGTAATGGGTTCATA+TGG + chr8_1:81177122-81177141 Msa1218500:CDS 40.0%
!! TGGCTGTAATGGGTTCATAT+GGG + chr8_1:81177123-81177142 Msa1218500:CDS 40.0%
!! TGTAATGGGTTCATATGGGT+TGG + chr8_1:81177127-81177146 Msa1218500:CDS 40.0%
!! GTAATGGGTTCATATGGGTT+GGG + chr8_1:81177128-81177147 Msa1218500:CDS 40.0%
!! TAATGGGTTCATATGGGTTG+GGG + chr8_1:81177129-81177148 Msa1218500:CDS 40.0%
TGTTGAAGTCAGAGATGACA+TGG + chr8_1:81177156-81177175 Msa1218500:CDS 40.0%
CTTGATATACACGACATGCT+TGG + chr8_1:81177391-81177410 Msa1218500:CDS 40.0%
! TGTTCTGGTTACCGAAAAAG+AGG + chr8_1:81177426-81177445 Msa1218500:CDS 40.0%
TTACCGAAAAAGAGGCTGAA+AGG + chr8_1:81177434-81177453 Msa1218500:CDS 40.0%
! TCTCCTTTCAGCCTCTTTTT+CGG - chr8_1:81177440-81177459 None:intergenic 40.0%
!! GTTTTATTATCCCTTTGCCG+GGG + chr8_1:81177511-81177530 Msa1218500:three_prime_UTR 40.0%
! AAAAGACAGACATGGGTTGT+AGG - chr8_1:81177725-81177744 None:intergenic 40.0%
TGCATCGTCTTCTGTTCTTA+TGG + chr8_1:81177752-81177771 Msa1218500:three_prime_UTR 40.0%
GCATCGTCTTCTGTTCTTAT+GGG + chr8_1:81177753-81177772 Msa1218500:three_prime_UTR 40.0%
ATGATTCAGGGTGGTAGCTA+GGG - chr8_1:81172360-81172379 None:intergenic 45.0%
AATGATTCAGGGTGGTAGCT+AGG - chr8_1:81172361-81172380 None:intergenic 45.0%
TGGAGGAAAATGATTCAGGG+TGG - chr8_1:81172369-81172388 None:intergenic 45.0%
TGGCTTAGTTCAATCGATGG+AGG - chr8_1:81172386-81172405 None:intergenic 45.0%
TAACTGAATCCCTCTCATGG+CGG - chr8_1:81172409-81172428 None:intergenic 45.0%
CTGTAACTGAATCCCTCTCA+TGG - chr8_1:81172412-81172431 None:intergenic 45.0%
TCAGAAACTCCGTCTACAGA+AGG + chr8_1:81172443-81172462 Msa1218500:CDS 45.0%
!! GTTCTAGAGCCTTCTGTAGA+CGG - chr8_1:81172455-81172474 None:intergenic 45.0%
!! TGAAGCATCGGAATTGACCT+TGG - chr8_1:81172496-81172515 None:intergenic 45.0%
ATGGTTGACGGGAATGGAAT+CGG - chr8_1:81172529-81172548 None:intergenic 45.0%
ATTCCCGTCAACCATGAAGA+CGG + chr8_1:81172534-81172553 Msa1218500:CDS 45.0%
TACACCGTCTTCATGGTTGA+CGG - chr8_1:81172541-81172560 None:intergenic 45.0%
CATGAAGACGGTGTACTCAA+GGG + chr8_1:81172546-81172565 Msa1218500:CDS 45.0%
ATTACCTTGAGCGTAAAGCG+CGG - chr8_1:81172653-81172672 None:intergenic 45.0%
AGTGTCAGTATGTGCTGCAT+AGG - chr8_1:81172692-81172711 None:intergenic 45.0%
TTCAGGTACAAACCTGAGGT+TGG + chr8_1:81172818-81172837 Msa1218500:intron 45.0%
! TGTTATTGGGCGTGTCATTG+AGG + chr8_1:81172847-81172866 Msa1218500:CDS 45.0%
TGGTGTCTGTTGTGTTGTGT+AGG + chr8_1:81172932-81172951 Msa1218500:intron 45.0%
TCTGCTATGAACATGCCTGA+TGG + chr8_1:81173014-81173033 Msa1218500:CDS 45.0%
! TTGACCTTGTTTCATCCTGG+AGG + chr8_1:81173282-81173301 Msa1218500:intron 45.0%
AGAAGTGGTGATAGCACCTA+CGG + chr8_1:81173624-81173643 Msa1218500:intron 45.0%
TTAAACTCTACACTGCCCGT+AGG - chr8_1:81173643-81173662 None:intergenic 45.0%
TAGTCAATAGCAGTGGTTCG+CGG + chr8_1:81173706-81173725 Msa1218500:intron 45.0%
TGCAGCTCATATTAAGGCTG+CGG + chr8_1:81173779-81173798 Msa1218500:intron 45.0%
AGGCAATATGGGAGTTTCGA+AGG - chr8_1:81173860-81173879 None:intergenic 45.0%
CACGAAGGAGAGAAGAATAC+TGG - chr8_1:81173931-81173950 None:intergenic 45.0%
GATGTTCTCTGCAAACACGA+AGG - chr8_1:81173946-81173965 None:intergenic 45.0%
GTCGTGTTCTCTAGTTAGGA+AGG + chr8_1:81174138-81174157 Msa1218500:intron 45.0%
CGTGTTCTCTAGTTAGGAAG+GGG + chr8_1:81174140-81174159 Msa1218500:intron 45.0%
GTGTTCTCTAGTTAGGAAGG+GGG + chr8_1:81174141-81174160 Msa1218500:intron 45.0%
GTTAGGAAGGGGGAAGTTAT+TGG + chr8_1:81174151-81174170 Msa1218500:intron 45.0%
TGTGTTAGGTTTCCTTTGGG+TGG + chr8_1:81174273-81174292 Msa1218500:intron 45.0%
ATGCCAATTCATCCACCCAA+AGG - chr8_1:81174288-81174307 None:intergenic 45.0%
GTGGTCAATGTTTGACATGC+TGG - chr8_1:81174532-81174551 None:intergenic 45.0%
CGGGTCATCTCTTTGTGATT+TGG - chr8_1:81174832-81174851 None:intergenic 45.0%
ATCACAAAGAGATGACCCGT+CGG + chr8_1:81174833-81174852 Msa1218500:intron 45.0%
GATGGCCAAATCACAAAGAG+AGG - chr8_1:81175177-81175196 None:intergenic 45.0%
TCGTACTCATGGATGTTGTG+AGG + chr8_1:81175296-81175315 Msa1218500:intron 45.0%
TTGCTTACCTACTTCCGATG+TGG - chr8_1:81175540-81175559 None:intergenic 45.0%
AGGTCCTACCAGTTCTTGTT+TGG - chr8_1:81175770-81175789 None:intergenic 45.0%
! CTGAACCGAACGAGTTGAAT+CGG + chr8_1:81175848-81175867 Msa1218500:intron 45.0%
! ACAGACCGATTCAACTCGTT+CGG - chr8_1:81175856-81175875 None:intergenic 45.0%
! GCTTTAAGTCCAATTAGGGC+TGG - chr8_1:81176006-81176025 None:intergenic 45.0%
GAAGTCTGTCGTCATGAAGT+GGG + chr8_1:81176080-81176099 Msa1218500:intron 45.0%
! GTTCGTGGTTTTCAGCATGA+TGG + chr8_1:81176588-81176607 Msa1218500:CDS 45.0%
GTCGGTTACATAACAGTAGC+CGG + chr8_1:81176726-81176745 Msa1218500:intron 45.0%
CGGTCAGAGACAGTACAAAA+TGG + chr8_1:81176746-81176765 Msa1218500:intron 45.0%
GAGGTGTAATGCAAGATTCC+TGG + chr8_1:81176842-81176861 Msa1218500:intron 45.0%
TGCAAGATTCCTGGAATCAG+GGG + chr8_1:81176851-81176870 Msa1218500:intron 45.0%
TAAAGTAACCCCCTGATTCC+AGG - chr8_1:81176863-81176882 None:intergenic 45.0%
TACCGTACTGCTCTATATGG+TGG - chr8_1:81177090-81177109 None:intergenic 45.0%
AGTGAACCAATCTGATCCAC+AGG + chr8_1:81177189-81177208 Msa1218500:CDS 45.0%
! AGAGAAAAAGTACACGGCAC+TGG + chr8_1:81177252-81177271 Msa1218500:CDS 45.0%
GGTAACCAGAACACAGAACT+CGG - chr8_1:81177419-81177438 None:intergenic 45.0%
AGCGGTAGATTGTGAAATCG+TGG + chr8_1:81177476-81177495 Msa1218500:exon 45.0%
!!! CCTATTTTTACCCCGGCAAA+GGG - chr8_1:81177524-81177543 None:intergenic 45.0%
!!! TCCTATTTTTACCCCGGCAA+AGG - chr8_1:81177525-81177544 None:intergenic 45.0%
TGCCGGGGTAAAAATAGGAA+AGG + chr8_1:81177526-81177545 Msa1218500:three_prime_UTR 45.0%
GTAGGGTGGCACTTAAAAGT+TGG + chr8_1:81177599-81177618 Msa1218500:three_prime_UTR 45.0%
GGTGGCACTTAAAAGTTGGA+TGG + chr8_1:81177603-81177622 Msa1218500:three_prime_UTR 45.0%
TGTTAAAGCTCTTGCACCTG+CGG + chr8_1:81177638-81177657 Msa1218500:three_prime_UTR 45.0%
TAGCTAGGGCACAGCTTCTT+CGG - chr8_1:81172346-81172365 None:intergenic 50.0%
CGGTGGCTTAGTTCAATCGA+TGG - chr8_1:81172389-81172408 None:intergenic 50.0%
CCTTGGAAGAGAGAGATTCG+AGG - chr8_1:81172479-81172498 None:intergenic 50.0%
CCTCGAATCTCTCTCTTCCA+AGG + chr8_1:81172476-81172495 Msa1218500:CDS 50.0%
GGCTATGGTGACTGAAGCAT+CGG - chr8_1:81172508-81172527 None:intergenic 50.0%
GTCTTCATGGTTGACGGGAA+TGG - chr8_1:81172535-81172554 None:intergenic 50.0%
ACACCGTCTTCATGGTTGAC+GGG - chr8_1:81172540-81172559 None:intergenic 50.0%
CCTTGAGTACACCGTCTTCA+TGG - chr8_1:81172548-81172567 None:intergenic 50.0%
CCATGAAGACGGTGTACTCA+AGG + chr8_1:81172545-81172564 Msa1218500:CDS 50.0%
GAAGTTGTTGCCACTCTCTG+TGG + chr8_1:81172594-81172613 Msa1218500:CDS 50.0%
CACTTCACATGTGCCAGTGT+CGG + chr8_1:81172708-81172727 Msa1218500:intron 50.0%
TGAACTCGTGAAGACGTGTC+TGG - chr8_1:81172737-81172756 None:intergenic 50.0%
! TGTAGGTTGCTCAGAAGCGT+TGG + chr8_1:81172949-81172968 Msa1218500:intron 50.0%
!! TGCTCAGAAGCGTTGGAGAT+TGG + chr8_1:81172956-81172975 Msa1218500:CDS 50.0%
! GAACATGCCTGATGGTGTAC+AGG + chr8_1:81173022-81173041 Msa1218500:CDS 50.0%
GAAGTGGTGATAGCACCTAC+GGG + chr8_1:81173625-81173644 Msa1218500:intron 50.0%
ACCTGCGAACACACACAGAA+CGG - chr8_1:81173805-81173824 None:intergenic 50.0%
GGCATGAAGCTTGCAGAAGA+GGG - chr8_1:81173975-81173994 None:intergenic 50.0%
AGGCATGAAGCTTGCAGAAG+AGG - chr8_1:81173976-81173995 None:intergenic 50.0%
AGCAGTCGGCGCACATATTA+TGG - chr8_1:81174672-81174691 None:intergenic 50.0%
!! GAAGTTGATGTCTTCGGGCA+TGG + chr8_1:81175110-81175129 Msa1218500:intron 50.0%
ACGGTTCTGCCATCTTTACG+AGG - chr8_1:81175238-81175257 None:intergenic 50.0%
ACATGTGCCACATCGGAAGT+AGG + chr8_1:81175530-81175549 Msa1218500:intron 50.0%
! TTAAGGTCTGGGGCAGTGTT+TGG + chr8_1:81175725-81175744 Msa1218500:intron 50.0%
TGGGCCAAACAAGAACTGGT+AGG + chr8_1:81175763-81175782 Msa1218500:intron 50.0%
GGCTCATTTCCAGCCCTAAT+TGG + chr8_1:81175994-81176013 Msa1218500:intron 50.0%
CGAAGTCTGTCGTCATGAAG+TGG + chr8_1:81176079-81176098 Msa1218500:intron 50.0%
AAACCACGAACTTCAGCCTG+TGG - chr8_1:81176579-81176598 None:intergenic 50.0%
GCAAGATTCCTGGAATCAGG+GGG + chr8_1:81176852-81176871 Msa1218500:intron 50.0%
TGGTTCCGAGTTCTGTGTTC+TGG + chr8_1:81177411-81177430 Msa1218500:CDS 50.0%
CCCTTTGCCGGGGTAAAAAT+AGG + chr8_1:81177521-81177540 Msa1218500:three_prime_UTR 50.0%
GTTAAAGCTCTTGCACCTGC+GGG + chr8_1:81177639-81177658 Msa1218500:three_prime_UTR 50.0%
TTAAAGCTCTTGCACCTGCG+GGG + chr8_1:81177640-81177659 Msa1218500:three_prime_UTR 50.0%
CCTGAAAAGCAAGGTGGCAA+CGG - chr8_1:81177696-81177715 None:intergenic 50.0%
!! CGTTGCCACCTTGCTTTTCA+GGG + chr8_1:81177694-81177713 Msa1218500:three_prime_UTR 50.0%
TGTCACCCTGAAAAGCAAGG+TGG - chr8_1:81177702-81177721 None:intergenic 50.0%
! AGGTGTCACCCTGAAAAGCA+AGG - chr8_1:81177705-81177724 None:intergenic 50.0%
AACTAAGCCACCGCCATGAG+AGG + chr8_1:81172396-81172415 Msa1218500:exon 55.0%
ACTAAGCCACCGCCATGAGA+GGG + chr8_1:81172397-81172416 Msa1218500:exon 55.0%
GACGGGAATGGAATCGGCTA+TGG - chr8_1:81172523-81172542 None:intergenic 55.0%
GACGGTGTACTCAAGGGACA+CGG + chr8_1:81172552-81172571 Msa1218500:CDS 55.0%
ATGTCCGCGCTTTACGCTCA+AGG + chr8_1:81172646-81172665 Msa1218500:CDS 55.0%
TGTGTGTTCGCAGGTCGTAG+TGG + chr8_1:81173810-81173829 Msa1218500:intron 55.0%
GTGTGTTCGCAGGTCGTAGT+GGG + chr8_1:81173811-81173830 Msa1218500:intron 55.0%
!! CGAGCTTCTTGAAGGCATCC+TGG - chr8_1:81174590-81174609 None:intergenic 55.0%
TAGGCTCTCTGGCGTGTTTC+TGG + chr8_1:81174993-81175012 Msa1218500:intron 55.0%
GGAGTGGGTACTCGTACTCA+TGG + chr8_1:81175285-81175304 Msa1218500:intron 55.0%
GGTCTGGGCCAAACAAGAAC+TGG + chr8_1:81175759-81175778 Msa1218500:intron 55.0%
CTTTCCACTGCTAGAGGCGA+AGG + chr8_1:81176421-81176440 Msa1218500:intron 55.0%
TGTCCACAGGCTGAAGTTCG+TGG + chr8_1:81176573-81176592 Msa1218500:intron 55.0%
!! CCGTTGCCACCTTGCTTTTC+AGG + chr8_1:81177693-81177712 Msa1218500:three_prime_UTR 55.0%
CTGAATCCCTCTCATGGCGG+TGG - chr8_1:81172406-81172425 None:intergenic 60.0%
AACTTCGCCCTCGAGGTCAG+CGG - chr8_1:81172580-81172599 None:intergenic 60.0%
TGGCAACAACTTCGCCCTCG+AGG - chr8_1:81172587-81172606 None:intergenic 60.0%
ACGTGTCTGGTGTCCGACAC+TGG - chr8_1:81172724-81172743 None:intergenic 60.0%
ATAGCAGTGGTTCGCGGCTC+CGG + chr8_1:81173712-81173731 Msa1218500:intron 60.0%
TGCACCAAACCACACCACCG+CGG - chr8_1:81173763-81173782 None:intergenic 60.0%
GCCGTTCTGTGTGTGTTCGC+AGG + chr8_1:81173801-81173820 Msa1218500:intron 60.0%
CTGTCCTTCGCCTCTAGCAG+TGG - chr8_1:81176428-81176447 None:intergenic 60.0%
TTGCACCTGCGGGGAGATGT+GGG + chr8_1:81177649-81177668 Msa1218500:three_prime_UTR 60.0%
TTCATCCCACATCTCCCCGC+AGG - chr8_1:81177657-81177676 None:intergenic 60.0%
ACACGGAACCGCTGACCTCG+AGG + chr8_1:81172569-81172588 Msa1218500:CDS 65.0%
CACGGAACCGCTGACCTCGA+GGG + chr8_1:81172570-81172589 Msa1218500:CDS 65.0%
CTCGACGACGCCACAGAGAG+TGG - chr8_1:81172607-81172626 None:intergenic 65.0%
CTTGCACCTGCGGGGAGATG+TGG + chr8_1:81177648-81177667 Msa1218500:three_prime_UTR 65.0%
ATGCTCTGGCGCGATCGCGC+CGG - chr8_1:81173734-81173753 None:intergenic 70.0%
CGATCGCGCCAGAGCATGGC+TGG + chr8_1:81173737-81173756 Msa1218500:intron 70.0%
CTGGCCGCGGTGGTGTGGTT+TGG + chr8_1:81173756-81173775 Msa1218500:intron 70.0%
GGCGCGATCGCGCCAGAGCA+TGG + chr8_1:81173733-81173752 Msa1218500:intron 75.0%
! CGCCAGAGCATGGCTGGCCG+CGG + chr8_1:81173743-81173762 Msa1218500:intron 75.0%
CACCGCGGCCAGCCATGCTC+TGG - chr8_1:81173748-81173767 None:intergenic 75.0%
! CAGAGCATGGCTGGCCGCGG+TGG + chr8_1:81173746-81173765 Msa1218500:intron 75.0%
! CATGGCTGGCCGCGGTGGTG+TGG + chr8_1:81173751-81173770 Msa1218500:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 81172281 81177908 81172281 ID=Msa1218500;Name=Msa1218500
chr8_1 mRNA 81172281 81177908 81172281 ID=Msa1218500-mRNA-1;Parent=Msa1218500;Name=Msa1218500-mRNA-1;_AED=0.15;_eAED=0.15;_QI=130|1|1|1|1|1|6|425|327
chr8_1 exon 81172281 81172667 81172281 ID=Msa1218500-mRNA-1:exon:28605;Parent=Msa1218500-mRNA-1
chr8_1 exon 81172823 81172868 81172823 ID=Msa1218500-mRNA-1:exon:28606;Parent=Msa1218500-mRNA-1
chr8_1 exon 81172954 81173043 81172954 ID=Msa1218500-mRNA-1:exon:28607;Parent=Msa1218500-mRNA-1
chr8_1 exon 81176435 81176500 81176435 ID=Msa1218500-mRNA-1:exon:28608;Parent=Msa1218500-mRNA-1
chr8_1 exon 81176582 81176647 81176582 ID=Msa1218500-mRNA-1:exon:28609;Parent=Msa1218500-mRNA-1
chr8_1 exon 81177025 81177908 81177025 ID=Msa1218500-mRNA-1:exon:28610;Parent=Msa1218500-mRNA-1
chr8_1 five_prime_UTR 81172281 81172410 81172281 ID=Msa1218500-mRNA-1:five_prime_utr;Parent=Msa1218500-mRNA-1
chr8_1 CDS 81172411 81172667 81172411 ID=Msa1218500-mRNA-1:cds;Parent=Msa1218500-mRNA-1
chr8_1 CDS 81172823 81172868 81172823 ID=Msa1218500-mRNA-1:cds;Parent=Msa1218500-mRNA-1
chr8_1 CDS 81172954 81173043 81172954 ID=Msa1218500-mRNA-1:cds;Parent=Msa1218500-mRNA-1
chr8_1 CDS 81176435 81176500 81176435 ID=Msa1218500-mRNA-1:cds;Parent=Msa1218500-mRNA-1
chr8_1 CDS 81176582 81176647 81176582 ID=Msa1218500-mRNA-1:cds;Parent=Msa1218500-mRNA-1
chr8_1 CDS 81177025 81177483 81177025 ID=Msa1218500-mRNA-1:cds;Parent=Msa1218500-mRNA-1
chr8_1 three_prime_UTR 81177484 81177908 81177484 ID=Msa1218500-mRNA-1:three_prime_utr;Parent=Msa1218500-mRNA-1
Gene Sequence

>Msa1218500

ATGAGAGGGATTCAGTTACAGTTGAGTCAAACTCAGAAACTCCGTCTACAGAAGGCTCTAGAACACCTCGAATCTCTCTCTTCCAAGGTCAATTCCGATGCTTCAGTCACCATAGCCGATTCCATTCCCGTCAACCATGAAGACGGTGTACTCAAGGGACACGGAACCGCTGACCTCGAGGGCGAAGTTGTTGCCACTCTCTGTGGCGTCGTCGAGCGTGTTAACAAGCTCGTTTATGTCCGCGCTTTACGCTCAAGGTACAAACCTGAGGTTGGTGACATTGTTATTGGGCGTGTCATTGAGGTTGCTCAGAAGCGTTGGAGATTGGATATTAATTACAGTCAAAACGCTTATTTGATGCTTTCTGCTATGAACATGCCTGATGGTGTACAGAGGCGAAGGACAGCTTTAGATGAGCTAAATATGCGCTGTATTTTTGAGGAGGCAGATGTCATTTGTGCTGAAGTTCGTGGTTTTCAGCATGATGGCTTACACCTTCAAGCAAGAAGTCAAAAATATGGAAAGCTTAGTACTGGTCAACTGCTTACAGTCACACCATATTTAGTGAAGAGGCAGAAACAACATTTCCACCATATAGAGCAGTACGGTATTGATTTAATAATTGGCTGTAATGGGTTCATATGGGTTGGGGAACATGTTGAAGTCAGAGATGACATGGTAGAAGATCAAGTGAACCAATCTGATCCACAGGTTTTAACTCCCAATAAAAATTCTGTGAGTCTTGAAGAACAAGAGAAAAAGTACACGGCACTGGAGACAAGAAAGTACATATGCAGGGCTGCTAATGCTGTTAGAGTATTATCTACTTTAGGATTCATTATAACATCGGAAATCATCAAGGGAGTTATTGATCTCAGCCTTTCTGCGAATCTTGATATACACGACATGCTTGGTTCCGAGTTCTGTGTTCTGGTTACCGAAAAAGAGGCTGAAAGGAGAAGCTCAAATAAAAAGAAGCGGTAG

Protein sequence

>Msa1218500

MRGIQLQLSQTQKLRLQKALEHLESLSSKVNSDASVTIADSIPVNHEDGVLKGHGTADLEGEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLMLSAMNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDGLHLQARSQKYGKLSTGQLLTVTPYLVKRQKQHFHHIEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVLTPNKNSVSLEEQEKKYTALETRKYICRAANAVRVLSTLGFIITSEIIKGVIDLSLSANLDIHDMLGSEFCVLVTEKEAERRSSNKKKR*