AlfalfaGEDB | Msa1460970

M. sativa cultivar zhongmu-4 / Msa1460970

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
PFAM: PF02469.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460970	XP_003618017.1	91.635	263	20	2	1	262	1	262	5.92e-135	391

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460970	sp\|Q9SJ81\|FLA7_ARATH	65.079	189	66	0	47	235	45	233	1.79e-76	235

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460970	G7K503	91.635	263	20	2	1	262	1	262	2.83e-135	391

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa1460970	0.822935	1.815124e-53	-8.615850e-47
Msa0006840	Msa1460970	0.839251	1.772202e-57	-8.615850e-47
Msa0009530	Msa1460970	-0.826740	2.297573e-54	-8.615850e-47
Msa0009560	Msa1460970	-0.814198	1.740790e-51	-8.615850e-47
Msa0016440	Msa1460970	0.811063	8.445081e-51	-8.615850e-47
Msa0020320	Msa1460970	-0.810198	1.298829e-50	-8.615850e-47
Msa0032130	Msa1460970	0.819643	1.042938e-52	-8.615850e-47
Msa0036810	Msa1460970	0.816093	6.603667e-52	-8.615850e-47
Msa0037660	Msa1460970	0.841569	4.388394e-58	-8.615850e-47
Msa0044170	Msa1460970	0.806818	6.837805e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460970	MtrunA17_Chr5g0448001	91.635	263	20	2	1	262	1	262	5.45e-139	391
Msa1460970	MtrunA17_Chr7g0263981	40.237	169	90	4	33	195	26	189	1.08e-32	120
Msa1460970	MtrunA17_Chr2g0325021	33.043	230	151	3	31	259	22	249	2.91e-27	105
Msa1460970	MtrunA17_Chr4g0029331	35.789	190	111	4	8	194	28	209	1.34e-24	99.0
Msa1460970	MtrunA17_Chr4g0029501	33.061	245	141	9	28	262	55	286	5.61e-23	95.1
Msa1460970	MtrunA17_Chr2g0326431	36.667	150	90	2	48	194	41	188	3.47e-21	89.4
Msa1460970	MtrunA17_Chr4g0029441	32.174	230	138	8	28	247	55	276	4.52e-21	90.1
Msa1460970	MtrunA17_Chr4g0026611	30.081	246	151	8	28	262	59	294	1.04e-20	89.0
Msa1460970	MtrunA17_Chr7g0246041	33.714	175	110	4	47	219	183	353	3.88e-20	89.0
Msa1460970	MtrunA17_Chr8g0379631	32.086	187	106	5	22	190	56	239	4.96e-19	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460970	AT2G04780.1	65.079	189	66	0	47	235	45	233	1.82e-77	235
Msa1460970	AT2G04780.2	65.079	189	66	0	47	235	45	233	1.82e-77	235
Msa1460970	AT5G44130.1	34.359	195	120	4	47	237	35	225	1.10e-31	117
Msa1460970	AT2G20520.1	36.444	225	125	6	16	224	1	223	4.47e-31	115
Msa1460970	AT1G03870.1	33.023	215	135	5	47	258	38	246	6.27e-31	115
Msa1460970	AT5G60490.1	40.268	149	87	1	48	194	39	187	6.78e-29	110
Msa1460970	AT5G03170.1	36.842	171	104	3	37	204	26	195	1.12e-28	109
Msa1460970	AT3G46550.1	34.694	196	113	7	22	211	187	373	3.26e-21	92.4
Msa1460970	AT3G60900.1	34.659	176	105	5	39	208	180	351	1.73e-18	84.7
Msa1460970	AT2G45470.1	32.889	225	133	5	29	240	170	389	1.11e-16	79.3

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Find 67 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAAATGTTGCCAACACA+AGG	0.581175	tig0041176:-2878	Msa1460970:intergenic
AACCTTGTGTTGGCAACATT+TGG	0.304302	tig0041176:+2876	Msa1460970:CDS
AATAGAAATGTGGCAAAGCA+TGG	0.549806	tig0041176:-2485	Msa1460970:intergenic
AATCTCATCAGCTTTGAGTT+TGG	0.359351	tig0041176:-2445	Msa1460970:intergenic
AATGTGGCAAAGCATGGAAA+AGG	0.503046	tig0041176:-2479	Msa1460970:intergenic
AATTTGGGGCAACCTTGTGT+TGG	0.628436	tig0041176:+2866	Msa1460970:CDS
ACAAAATCTGGTGTAGGTGC+TGG	0.568282	tig0041176:-2249	Msa1460970:intergenic
ACCGGCAAATGTTGGAGTTG+AGG	0.585382	tig0041176:-2541	Msa1460970:intergenic
ACGATTTGCTCCCAGCACTT+TGG	0.511706	tig0041176:-2788	Msa1460970:intergenic
ACTGAATTACTCACTGTTGC+TGG	0.384658	tig0041176:+2279	Msa1460970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATTTCACCGATAATTC+CGG	+	tig0041176:2576-2595	Msa1460970:CDS	30.0%
GGAACTGTCAAAATTAATTC+AGG	+	tig0041176:2597-2616	Msa1460970:CDS	30.0%
CTGTCAAAATTAATTCAGGA+TGG	+	tig0041176:2601-2620	Msa1460970:CDS	30.0%
TCAACTTGATAAATTGCAAC+AGG	-	tig0041176:2666-2685	Msa1460970:intergenic	30.0%
TTGAATTTCACCGATAATTC+CGG	+	tig0041176:2576-2595	Msa1460970:CDS	30.0%
GGAACTGTCAAAATTAATTC+AGG	+	tig0041176:2597-2616	Msa1460970:CDS	30.0%
CTGTCAAAATTAATTCAGGA+TGG	+	tig0041176:2601-2620	Msa1460970:CDS	30.0%
TCAACTTGATAAATTGCAAC+AGG	-	tig0041176:2666-2685	Msa1460970:intergenic	30.0%
AGGTTAACAAAATCTGGTGT+AGG	-	tig0041176:2258-2277	Msa1460970:intergenic	35.0%
TCAGTGAGGTTAACAAAATC+TGG	-	tig0041176:2264-2283	Msa1460970:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0041176	gene	2132	2920	2132	ID=Msa1460970;Name=Msa1460970
tig0041176	mRNA	2132	2920	2132	ID=Msa1460970-mRNA-1;Parent=Msa1460970;Name=Msa1460970-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|262
tig0041176	exon	2132	2920	2132	ID=Msa1460970-mRNA-1:exon:22976;Parent=Msa1460970-mRNA-1
tig0041176	CDS	2132	2920	2132	ID=Msa1460970-mRNA-1:cds;Parent=Msa1460970-mRNA-1

Gene Sequence

>Msa1460970

ATGAAGGTTTCATTGATTTTCCTTGTGAGCTGCACTCTGTTGCTTCTGAGCTCATCGGCATTTGCCAAAACCGTAAGTCCACCCTCTCCCCCCGAGAGTCCAACTCCGGCTCCAGCACCAGCACCTACACCAGATTTTGTTAACCTCACTGAATTACTCACTGTTGCTGGTCCATTTCACACTTTTCTTCAATACCTTCAATCCACAAAAGTTTTGGACACGTTCCAAAACCAAGCAAACAACACTGAAGAAGGAATCACTATCTTTGTTCCAAAAGACAGTTCCTTCGCATCATTGAAGAAACCTTCTTTATCCAAACTCAAAGCTGATGAGATTAAACAAGTGATCCTTTTCCATGCTTTGCCACATTTCTATTCACTAGCTGATTTCAAAAACCTTAGCCAAACTGCCTCAACTCCAACATTTGCCGGTGGTGATTACACATTGAATTTCACCGATAATTCCGGAACTGTCAAAATTAATTCAGGATGGTCAATCACTAAGGTGACTAGTGCAGTTCATGCCACTGATCCTGTTGCAATTTATCAAGTTGATAAGGTTTTGCTTCCTGAGGCTATTTTTGGCACTGATATTCCTCCTGTTCCGGCTCCTGCACCCACACCTGAAATTGCGCCTGCAGCTGATTCTCCAGCTGACCAAAGTGCTGGGAGCAAATCGTCTTCACCTTCATCTTCACCAGATAGTTCGTCTTCTTACAAGATTGTCAGCTATGGAATTTGGGGCAACCTTGTGTTGGCAACATTTGGTTTGTTGGTGGCACTCTTGTGA

Protein sequence

>Msa1460970

MKVSLIFLVSCTLLLLSSSAFAKTVSPPSPPESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKADEIKQVILFHALPHFYSLADFKNLSQTASTPTFAGGDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVPAPAPTPEIAPAADSPADQSAGSKSSSPSSSPDSSSSYKIVSYGIWGNLVLATFGLLVALL*