AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1193430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193430 MtrunA17_Chr8g0348281 90.566 53 5 0 1 53 157 209 1.04e-31 109
Msa1193430 MtrunA17_Chr4g0019181 93.939 33 2 0 1 33 136 168 6.47e-18 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193430 AT2G46100.1 79.245 53 11 0 1 53 163 215 1.12e-28 102

Find 59 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGAGGCCTATTCTTTC+TGG 0.046570 8_1:+39712439 Msa1193430:CDS
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 8_1:+39710565 Msa1193430:five_prime_UTR
GTTGTTGTGACTCTTGATTT+TGG 0.256583 8_1:-39710719 None:intergenic
CACTAACTTTGGATCACTTC+TGG 0.287804 8_1:+39711995 Msa1193430:five_prime_UTR
AAAGCTTGCTTAATTATTGA+TGG 0.297894 8_1:+39713260 Msa1193430:three_prime_UTR
TTGTGGTGATGTTGTTGTTT+TGG 0.314085 8_1:-39710647 None:intergenic
AGGAATATCCTGTATATATA+TGG 0.323875 8_1:+39713122 Msa1193430:three_prime_UTR
TGCATTGAATTTGAAACCTA+TGG 0.325155 8_1:-39710686 None:intergenic
TATGGTTTACCAGATTAATT+AGG 0.325566 8_1:+39713140 Msa1193430:three_prime_UTR
GCTGTATCTTGTCCTTTCCT+TGG 0.347381 8_1:+39712422 Msa1193430:CDS
ACAGAACAATGTATTTCTTA+AGG 0.354819 8_1:+39710740 Msa1193430:five_prime_UTR
CTGTGACAAAATAAGATCTT+TGG 0.367519 8_1:-39710905 None:intergenic
CTTTGTTCAAGCAAATTCTA+AGG 0.368956 8_1:+39712919 Msa1193430:CDS
TGGTATAGTTCTGAGCTTCT+AGG 0.369490 8_1:+39710768 Msa1193430:five_prime_UTR
AAAAGGAACTGCACTAACTT+TGG 0.371780 8_1:+39711984 Msa1193430:five_prime_UTR
CACATGTAAGTCTGTGGTAT+TGG 0.388973 8_1:+39713054 Msa1193430:three_prime_UTR
CTGAAGTTGTCCAGGTGAAT+AGG 0.399442 8_1:+39712984 Msa1193430:three_prime_UTR
GTATCTTGTCCTTTCCTTGG+AGG 0.412030 8_1:+39712425 Msa1193430:CDS
CCATGACAGGATAAAGGAAT+TGG 0.428536 8_1:+39712385 Msa1193430:intron
TTTGCTCCATGACAGGATAA+AGG 0.440137 8_1:+39712379 Msa1193430:intron
GTTAGAATCTAAGAACAAAC+AGG 0.441894 8_1:-39710525 None:intergenic
ATTCACAGACCTAATTAATC+TGG 0.444076 8_1:-39713149 None:intergenic
CTGGTAAACCATATATATAC+AGG 0.446381 8_1:-39713130 None:intergenic
GTACTAATTATAGAAGTCTA+TGG 0.447623 8_1:+39713080 Msa1193430:three_prime_UTR
TGAGATTTACCAGAAAGAAT+AGG 0.456237 8_1:-39712448 None:intergenic
GTGGTGATGGTTGTGACTAA+TGG 0.469661 8_1:-39710606 None:intergenic
TGAAGAGGATTGTGAATTTG+CGG 0.489339 8_1:+39711926 Msa1193430:five_prime_UTR
AAGGACTTCAGCGTTTCAAA+AGG 0.491123 8_1:+39711967 Msa1193430:five_prime_UTR
TTTAAGCTAAATCCCTTGCT+AGG 0.497530 8_1:-39712942 None:intergenic
ATTAATTAGGTCTGTGAATG+TGG 0.499247 8_1:+39713153 Msa1193430:three_prime_UTR
AGGTTTCAAATTCAATGCAA+TGG 0.509267 8_1:+39710690 Msa1193430:five_prime_UTR
ATGTATTTCTTAAGGTTGCA+TGG 0.514798 8_1:+39710748 Msa1193430:five_prime_UTR
CTAGGTTGCTGAAGTTGTCC+AGG 0.518768 8_1:+39712976 Msa1193430:three_prime_UTR
GAAGCTTCTTCTTCATCAGA+TGG 0.522340 8_1:-39710816 None:intergenic
CACAACAGAAGCACGATCAA+TGG 0.522503 8_1:-39710862 None:intergenic
CAACTATGAATCTTATGAAG+TGG 0.531678 8_1:+39712024 Msa1193430:exon
CCTGAAAACTTTCAGGCATG+TGG 0.535655 8_1:+39712872 Msa1193430:intron
CATTGATCGTGCTTCTGTTG+TGG 0.537026 8_1:+39710863 Msa1193430:five_prime_UTR
TGTGAATTTGCGGATCCAGC+GGG 0.538988 8_1:+39711936 Msa1193430:five_prime_UTR
CACATTGAATGCATATGAAG+AGG 0.540073 8_1:+39711911 Msa1193430:five_prime_UTR
AACTATGAATCTTATGAAGT+GGG 0.541276 8_1:+39712025 Msa1193430:exon
CCAGAAAGAATAGGCCTCCA+AGG 0.545523 8_1:-39712439 None:intergenic
GTAGAAGCTTATGATGTACT+AGG 0.548207 8_1:+39713102 Msa1193430:three_prime_UTR
AGGATAAAGGAATTGGTCAC+TGG 0.548719 8_1:+39712392 Msa1193430:intron
GCAAATTCTAAGGCCTAGCA+AGG 0.551037 8_1:+39712929 Msa1193430:exon
ATATAATTTACCTATTCACC+TGG 0.562345 8_1:-39712994 None:intergenic
CTTCTTCATCAGATGGAGAA+CGG 0.564350 8_1:-39710809 None:intergenic
GCTTAAAAGATTATGTGACT+AGG 0.578708 8_1:+39712958 Msa1193430:three_prime_UTR
TTAAAATAACAGCTCTAGTG+TGG 0.582268 8_1:-39710440 None:intergenic
AAGAATAGGCCTCCAAGGAA+AGG 0.586585 8_1:-39712434 None:intergenic
AGAACAAAGAAGTGTGGTGA+TGG 0.594904 8_1:-39710619 None:intergenic
ATTATACACATGTAAGTCTG+TGG 0.609997 8_1:+39713048 Msa1193430:three_prime_UTR
AGTCCTTTAAAAGATCCCGC+TGG 0.610274 8_1:-39711951 None:intergenic
TTGTGAATTTGCGGATCCAG+CGG 0.612444 8_1:+39711935 Msa1193430:five_prime_UTR
TAGATATTTAAATACAACGC+AGG 0.632509 8_1:+39710497 Msa1193430:five_prime_UTR
GTTTGAAGAAGTCTCTGAGG+AGG 0.641425 8_1:-39710840 None:intergenic
CAAATTCTAAGGCCTAGCAA+GGG 0.670959 8_1:+39712930 Msa1193430:exon
ATGGTTTGAAGAAGTCTCTG+AGG 0.694702 8_1:-39710843 None:intergenic
GTGCAAAGAACAAAGAAGTG+TGG 0.724805 8_1:-39710625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTACTTCATTTTTTTTT+TGG + chr8_1:39710380-39710399 Msa1193430:five_prime_UTR 15.0%
!!! TATTTTAATCCATTTTTATG+TGG + chr8_1:39710455-39710474 Msa1193430:five_prime_UTR 15.0%
!!! TAAAATTTGTTAGTTTAATC+AGG - chr8_1:39711356-39711375 None:intergenic 15.0%
!!! GATTTTTTTTTGTGTTATTG+TGG - chr8_1:39710667-39710686 None:intergenic 20.0%
!! TAACACAAAAAAAAATCCAT+AGG + chr8_1:39710670-39710689 Msa1193430:five_prime_UTR 20.0%
!!! TACTACTCAATAATGTTTTA+GGG + chr8_1:39711679-39711698 Msa1193430:intron 20.0%
!!! TTTTGTATCAGTCATTATAT+AGG - chr8_1:39711796-39711815 None:intergenic 20.0%
!!! GTATTTTGATTATAATCAGA+TGG + chr8_1:39711847-39711866 Msa1193430:intron 20.0%
!! GATTAAACTCTATTAAGTTA+AGG - chr8_1:39712250-39712269 None:intergenic 20.0%
!! TATAAAAAACACAAGTTTCT+AGG - chr8_1:39712288-39712307 None:intergenic 20.0%
!! AATTTCATTATGTTCATCAA+TGG - chr8_1:39712504-39712523 None:intergenic 20.0%
!! ATGTTCAAATTAACATGAAT+CGG + chr8_1:39712616-39712635 Msa1193430:intron 20.0%
!!! TATTATTTTGATACACAATC+AGG + chr8_1:39712765-39712784 Msa1193430:CDS 20.0%
!!! CTTCATTTTTTTTTTGGACA+TGG + chr8_1:39710386-39710405 Msa1193430:five_prime_UTR 25.0%
!!! TTTTTTTTTGGACATGGATT+TGG + chr8_1:39710392-39710411 Msa1193430:five_prime_UTR 25.0%
! TAGATATTTAAATACAACGC+AGG + chr8_1:39710497-39710516 Msa1193430:five_prime_UTR 25.0%
! ACAGAACAATGTATTTCTTA+AGG + chr8_1:39710740-39710759 Msa1193430:five_prime_UTR 25.0%
!! TTTCATTTGATTTCTGTGTT+TGG + chr8_1:39710983-39711002 Msa1193430:intron 25.0%
!! TTCATTTGATTTCTGTGTTT+GGG + chr8_1:39710984-39711003 Msa1193430:intron 25.0%
! CATACTTAAAATTGAAGCTA+TGG - chr8_1:39711020-39711039 None:intergenic 25.0%
!!! CATAGCTTCAATTTTAAGTA+TGG + chr8_1:39711018-39711037 Msa1193430:intron 25.0%
!!! TGTCTTTTTTACACATCATT+TGG + chr8_1:39711054-39711073 Msa1193430:intron 25.0%
!! GAGAAAAAGTTGATTACAAT+CGG + chr8_1:39711307-39711326 Msa1193430:intron 25.0%
!!! ATTGCTATTTTAAGCACTTA+CGG - chr8_1:39711507-39711526 None:intergenic 25.0%
! TGCTTAAAATAGCAATACAA+AGG + chr8_1:39711511-39711530 Msa1193430:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG + chr8_1:39711678-39711697 Msa1193430:intron 25.0%
! AACTATGAATCTTATGAAGT+GGG + chr8_1:39712025-39712044 Msa1193430:exon 25.0%
!! AATATAGAGTTTTGCAACTT+AGG + chr8_1:39712097-39712116 Msa1193430:intron 25.0%
! ATGTAATATCAAGAGTTACA+AGG - chr8_1:39712157-39712176 None:intergenic 25.0%
! TGTTCAAATTAACATGAATC+GGG + chr8_1:39712617-39712636 Msa1193430:intron 25.0%
! ATATAATTTACCTATTCACC+TGG - chr8_1:39712997-39713016 None:intergenic 25.0%
! GTACTAATTATAGAAGTCTA+TGG + chr8_1:39713080-39713099 Msa1193430:three_prime_UTR 25.0%
! AGGAATATCCTGTATATATA+TGG + chr8_1:39713122-39713141 Msa1193430:three_prime_UTR 25.0%
! TATGGTTTACCAGATTAATT+AGG + chr8_1:39713140-39713159 Msa1193430:three_prime_UTR 25.0%
!!! CTTTTCTCTGTTATTTTTTC+TGG - chr8_1:39713187-39713206 None:intergenic 25.0%
! CAGAAAAAATAACAGAGAAA+AGG + chr8_1:39713185-39713204 Msa1193430:three_prime_UTR 25.0%
!! AAAGCTTGCTTAATTATTGA+TGG + chr8_1:39713260-39713279 Msa1193430:three_prime_UTR 25.0%
! TTAAAATAACAGCTCTAGTG+TGG - chr8_1:39710443-39710462 None:intergenic 30.0%
TAATGCTAGCCACATAAAAA+TGG - chr8_1:39710467-39710486 None:intergenic 30.0%
GTTAGAATCTAAGAACAAAC+AGG - chr8_1:39710528-39710547 None:intergenic 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG + chr8_1:39710565-39710584 Msa1193430:five_prime_UTR 30.0%
! TGCATTGAATTTGAAACCTA+TGG - chr8_1:39710689-39710708 None:intergenic 30.0%
AGGTTTCAAATTCAATGCAA+TGG + chr8_1:39710690-39710709 Msa1193430:five_prime_UTR 30.0%
ATGTATTTCTTAAGGTTGCA+TGG + chr8_1:39710748-39710767 Msa1193430:five_prime_UTR 30.0%
CTGTGACAAAATAAGATCTT+TGG - chr8_1:39710908-39710927 None:intergenic 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG + chr8_1:39710906-39710925 Msa1193430:five_prime_UTR 30.0%
!!! ATGCTTTTTCTTATGAAACG+TGG + chr8_1:39710945-39710964 Msa1193430:intron 30.0%
!! TCATTTGGATGATTGATTTG+TGG + chr8_1:39711069-39711088 Msa1193430:intron 30.0%
ATTCCTAGTTACTGATAAGT+GGG + chr8_1:39711126-39711145 Msa1193430:intron 30.0%
AACGTTTATTGGGTTATGAT+TGG + chr8_1:39711166-39711185 Msa1193430:intron 30.0%
ACGTTTATTGGGTTATGATT+GGG + chr8_1:39711167-39711186 Msa1193430:intron 30.0%
!! GTATCTTTTACTTTTGAACC+AGG + chr8_1:39711623-39711642 Msa1193430:intron 30.0%
!!! CTCAATAATGTTTTAGGGAT+TGG + chr8_1:39711684-39711703 Msa1193430:intron 30.0%
TTATAATCAGATGGTTCACA+TGG + chr8_1:39711856-39711875 Msa1193430:intron 30.0%
CAACTATGAATCTTATGAAG+TGG + chr8_1:39712024-39712043 Msa1193430:exon 30.0%
TTACATGCAACTGATGATAA+AGG + chr8_1:39712171-39712190 Msa1193430:intron 30.0%
! TCAATCTTTTTATCGAGTGT+TGG + chr8_1:39712319-39712338 Msa1193430:intron 30.0%
TGAGATTTACCAGAAAGAAT+AGG - chr8_1:39712451-39712470 None:intergenic 30.0%
TGTATTTATCTGCATTTGAC+TGG + chr8_1:39712550-39712569 Msa1193430:intron 30.0%
ACGAAAAATAAATCCAAGAG+AGG - chr8_1:39712578-39712597 None:intergenic 30.0%
! CGGGTTTTTAATAGAATATG+TGG + chr8_1:39712636-39712655 Msa1193430:intron 30.0%
TGCTGCAACATATATTAACA+TGG - chr8_1:39712730-39712749 None:intergenic 30.0%
TTAATATATGTTGCAGCAAC+TGG + chr8_1:39712732-39712751 Msa1193430:intron 30.0%
CTAAATTCCTGAAAACTTTC+AGG + chr8_1:39712865-39712884 Msa1193430:intron 30.0%
CTTTGTTCAAGCAAATTCTA+AGG + chr8_1:39712919-39712938 Msa1193430:CDS 30.0%
GCTTAAAAGATTATGTGACT+AGG + chr8_1:39712958-39712977 Msa1193430:three_prime_UTR 30.0%
ATTATACACATGTAAGTCTG+TGG + chr8_1:39713048-39713067 Msa1193430:three_prime_UTR 30.0%
CTGGTAAACCATATATATAC+AGG - chr8_1:39713133-39713152 None:intergenic 30.0%
ATTCACAGACCTAATTAATC+TGG - chr8_1:39713152-39713171 None:intergenic 30.0%
ATTAATTAGGTCTGTGAATG+TGG + chr8_1:39713153-39713172 Msa1193430:three_prime_UTR 30.0%
!!! TTGTGGTGATGTTGTTGTTT+TGG - chr8_1:39710650-39710669 None:intergenic 35.0%
! GTTGTTGTGACTCTTGATTT+TGG - chr8_1:39710722-39710741 None:intergenic 35.0%
!! GATGATTGATTTGTGGAGAA+AGG + chr8_1:39711076-39711095 Msa1193430:intron 35.0%
CATGACTATTCAGAGTTGTT+AGG + chr8_1:39711099-39711118 Msa1193430:intron 35.0%
GATTCCTAGTTACTGATAAG+TGG + chr8_1:39711125-39711144 Msa1193430:intron 35.0%
CGTTTATTGGGTTATGATTG+GGG + chr8_1:39711168-39711187 Msa1193430:intron 35.0%
GTTTATTGGGTTATGATTGG+GGG + chr8_1:39711169-39711188 Msa1193430:intron 35.0%
TTTATTGGGTTATGATTGGG+GGG + chr8_1:39711170-39711189 Msa1193430:intron 35.0%
TCAGGAGCAATGTTGTAATA+TGG + chr8_1:39711442-39711461 Msa1193430:intron 35.0%
GTAATGCTGAGAACAAAAAG+AGG + chr8_1:39711706-39711725 Msa1193430:intron 35.0%
CACATTGAATGCATATGAAG+AGG + chr8_1:39711911-39711930 Msa1193430:five_prime_UTR 35.0%
TGAAGAGGATTGTGAATTTG+CGG + chr8_1:39711926-39711945 Msa1193430:five_prime_UTR 35.0%
AAAAGGAACTGCACTAACTT+TGG + chr8_1:39711984-39712003 Msa1193430:five_prime_UTR 35.0%
! TATGAAGTGGGAAGATTTTG+AGG + chr8_1:39712037-39712056 Msa1193430:CDS 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG - chr8_1:39712072-39712091 None:intergenic 35.0%
GATGATAAAGGTTTCTGATG+CGG + chr8_1:39712183-39712202 Msa1193430:intron 35.0%
CTATTAAGTTAAGGCTGCTT+AGG - chr8_1:39712241-39712260 None:intergenic 35.0%
!! GTTTCTAGGATATGTTTAGC+AGG - chr8_1:39712274-39712293 None:intergenic 35.0%
GCATTAGAATGTGCCAAAAA+TGG + chr8_1:39712896-39712915 Msa1193430:CDS 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG - chr8_1:39712912-39712931 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+AGG - chr8_1:39712945-39712964 None:intergenic 35.0%
GTAGAAGCTTATGATGTACT+AGG + chr8_1:39713102-39713121 Msa1193430:three_prime_UTR 35.0%
! AGAACAAAGAAGTGTGGTGA+TGG - chr8_1:39710622-39710641 None:intergenic 40.0%
GTGCAAAGAACAAAGAAGTG+TGG - chr8_1:39710628-39710647 None:intergenic 40.0%
!! TGGTATAGTTCTGAGCTTCT+AGG + chr8_1:39710768-39710787 Msa1193430:five_prime_UTR 40.0%
CTTCTTCATCAGATGGAGAA+CGG - chr8_1:39710812-39710831 None:intergenic 40.0%
GAAGCTTCTTCTTCATCAGA+TGG - chr8_1:39710819-39710838 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+AGG - chr8_1:39710846-39710865 None:intergenic 40.0%
CTACCCACTTATCAGTAACT+AGG - chr8_1:39711132-39711151 None:intergenic 40.0%
CTAGTTACTGATAAGTGGGT+AGG + chr8_1:39711130-39711149 Msa1193430:intron 40.0%
TTACTGATAAGTGGGTAGGT+CGG + chr8_1:39711134-39711153 Msa1193430:intron 40.0%
GTTAGAATAGAACAGCAACC+TGG - chr8_1:39711644-39711663 None:intergenic 40.0%
AAGGACTTCAGCGTTTCAAA+AGG + chr8_1:39711967-39711986 Msa1193430:five_prime_UTR 40.0%
CACTAACTTTGGATCACTTC+TGG + chr8_1:39711995-39712014 Msa1193430:five_prime_UTR 40.0%
TCATACATTTGCTCCATGAC+AGG + chr8_1:39712372-39712391 Msa1193430:intron 40.0%
TTTGCTCCATGACAGGATAA+AGG + chr8_1:39712379-39712398 Msa1193430:intron 40.0%
CCAATTCCTTTATCCTGTCA+TGG - chr8_1:39712388-39712407 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG + chr8_1:39712385-39712404 Msa1193430:intron 40.0%
AGGATAAAGGAATTGGTCAC+TGG + chr8_1:39712392-39712411 Msa1193430:intron 40.0%
! CACAATCAGGAAAAGTATGC+AGG + chr8_1:39712778-39712797 Msa1193430:intron 40.0%
!! CAAATTCTAAGGCCTAGCAA+GGG + chr8_1:39712930-39712949 Msa1193430:exon 40.0%
CACATGTAAGTCTGTGGTAT+TGG + chr8_1:39713054-39713073 Msa1193430:three_prime_UTR 40.0%
!! GTGGTGATGGTTGTGACTAA+TGG - chr8_1:39710609-39710628 None:intergenic 45.0%
! GTTTGAAGAAGTCTCTGAGG+AGG - chr8_1:39710843-39710862 None:intergenic 45.0%
! CACAACAGAAGCACGATCAA+TGG - chr8_1:39710865-39710884 None:intergenic 45.0%
CATTGATCGTGCTTCTGTTG+TGG + chr8_1:39710863-39710882 Msa1193430:five_prime_UTR 45.0%
GCCAGGCTCAAACGTTTATT+GGG + chr8_1:39711156-39711175 Msa1193430:intron 45.0%
ACCCAATAAACGTTTGAGCC+TGG - chr8_1:39711160-39711179 None:intergenic 45.0%
TACACTTTGCTCCAACAGTG+TGG + chr8_1:39711418-39711437 Msa1193430:intron 45.0%
ATCTATTCCTCCCAACTCTC+AGG + chr8_1:39711882-39711901 Msa1193430:intron 45.0%
TGTGAGATCTCCTGAGAGTT+GGG - chr8_1:39711895-39711914 None:intergenic 45.0%
ATGTGAGATCTCCTGAGAGT+TGG - chr8_1:39711896-39711915 None:intergenic 45.0%
TTGTGAATTTGCGGATCCAG+CGG + chr8_1:39711935-39711954 Msa1193430:five_prime_UTR 45.0%
! GATCCAGCGGGATCTTTTAA+AGG + chr8_1:39711948-39711967 Msa1193430:five_prime_UTR 45.0%
! AGTCCTTTAAAAGATCCCGC+TGG - chr8_1:39711954-39711973 None:intergenic 45.0%
GCTGTATCTTGTCCTTTCCT+TGG + chr8_1:39712422-39712441 Msa1193430:CDS 45.0%
GTATCTTGTCCTTTCCTTGG+AGG + chr8_1:39712425-39712444 Msa1193430:CDS 45.0%
AAGAATAGGCCTCCAAGGAA+AGG - chr8_1:39712437-39712456 None:intergenic 45.0%
CATTTGACTGGAACCTCTCT+TGG + chr8_1:39712562-39712581 Msa1193430:intron 45.0%
! CCACATGCCTGAAAGTTTTC+AGG - chr8_1:39712875-39712894 None:intergenic 45.0%
CCTGAAAACTTTCAGGCATG+TGG + chr8_1:39712872-39712891 Msa1193430:intron 45.0%
!! GCAAATTCTAAGGCCTAGCA+AGG + chr8_1:39712929-39712948 Msa1193430:exon 45.0%
CTGAAGTTGTCCAGGTGAAT+AGG + chr8_1:39712984-39713003 Msa1193430:three_prime_UTR 45.0%
GGCCAGGCTCAAACGTTTAT+TGG + chr8_1:39711155-39711174 Msa1193430:intron 50.0%
TTGCTCCAACAGTGTGGTTC+AGG + chr8_1:39711424-39711443 Msa1193430:intron 50.0%
TTGCTCCTGAACCACACTGT+TGG - chr8_1:39711432-39711451 None:intergenic 50.0%
TGTGAATTTGCGGATCCAGC+GGG + chr8_1:39711936-39711955 Msa1193430:five_prime_UTR 50.0%
CCAGAAAGAATAGGCCTCCA+AGG - chr8_1:39712442-39712461 None:intergenic 50.0%
CCTTGGAGGCCTATTCTTTC+TGG + chr8_1:39712439-39712458 Msa1193430:CDS 50.0%
CTAGGTTGCTGAAGTTGTCC+AGG + chr8_1:39712976-39712995 Msa1193430:three_prime_UTR 50.0%
GGTTATGATTGGGGGGCTGA+TGG + chr8_1:39711177-39711196 Msa1193430:intron 55.0%
TATGATTGGGGGGCTGATGG+AGG + chr8_1:39711180-39711199 Msa1193430:intron 55.0%
ACTGCATCCCGCTTTGCAGT+CGG + chr8_1:39711535-39711554 Msa1193430:intron 55.0%
GAGATCTCCTGAGAGTTGGG+AGG - chr8_1:39711892-39711911 None:intergenic 55.0%
GATAAGTGGGTAGGTCGGCC+AGG + chr8_1:39711139-39711158 Msa1193430:intron 60.0%
TGCGTCTCCGACTGCAAAGC+GGG - chr8_1:39711545-39711564 None:intergenic 60.0%
CTGCGTCTCCGACTGCAAAG+CGG - chr8_1:39711546-39711565 None:intergenic 60.0%
CGCTTTGCAGTCGGAGACGC+AGG + chr8_1:39711544-39711563 Msa1193430:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 39710360 39713302 39710360 ID=Msa1193430;Name=Msa1193430
chr8_1 mRNA 39710360 39713302 39710360 ID=Msa1193430-mRNA-1;Parent=Msa1193430;Name=Msa1193430-mRNA-1;_AED=0.21;_eAED=0.21;_QI=693|0.75|0.8|1|1|1|5|356|66
chr8_1 exon 39710360 39710927 39710360 ID=Msa1193430-mRNA-1:exon:12982;Parent=Msa1193430-mRNA-1
chr8_1 exon 39711904 39712058 39711904 ID=Msa1193430-mRNA-1:exon:12983;Parent=Msa1193430-mRNA-1
chr8_1 exon 39712394 39712460 39712394 ID=Msa1193430-mRNA-1:exon:12984;Parent=Msa1193430-mRNA-1
chr8_1 exon 39712748 39712791 39712748 ID=Msa1193430-mRNA-1:exon:12985;Parent=Msa1193430-mRNA-1
chr8_1 exon 39712887 39713302 39712887 ID=Msa1193430-mRNA-1:exon:12986;Parent=Msa1193430-mRNA-1
chr8_1 five_prime_UTR 39710360 39710927 39710360 ID=Msa1193430-mRNA-1:five_prime_utr;Parent=Msa1193430-mRNA-1
chr8_1 five_prime_UTR 39711904 39712028 39711904 ID=Msa1193430-mRNA-1:five_prime_utr;Parent=Msa1193430-mRNA-1
chr8_1 CDS 39712029 39712058 39712029 ID=Msa1193430-mRNA-1:cds;Parent=Msa1193430-mRNA-1
chr8_1 CDS 39712394 39712460 39712394 ID=Msa1193430-mRNA-1:cds;Parent=Msa1193430-mRNA-1
chr8_1 CDS 39712748 39712791 39712748 ID=Msa1193430-mRNA-1:cds;Parent=Msa1193430-mRNA-1
chr8_1 CDS 39712887 39712946 39712887 ID=Msa1193430-mRNA-1:cds;Parent=Msa1193430-mRNA-1
chr8_1 three_prime_UTR 39712947 39713302 39712947 ID=Msa1193430-mRNA-1:three_prime_utr;Parent=Msa1193430-mRNA-1
Gene Sequence

>Msa1193430

ATGAATCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGGCCTATTCTTTCTGCAACTGGATACACAGAATATTATTTTGATACACAATCAGGAAAAGCATGTGGAGCATTAGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAG

Protein sequence

>Msa1193430

MNLMKWEDFEDKGIGHWRFSCILSFPWRPILSATGYTEYYFDTQSGKACGALECAKNGFVQANSKA*