AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1243730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243730 MtrunA17_Chr8g0348281 80.460 87 2 1 1 87 157 228 1.73e-44 142
Msa1243730 MtrunA17_Chr4g0019181 93.939 33 2 0 1 33 136 168 1.56e-17 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243730 AT2G46100.1 83.562 73 12 0 1 73 163 235 3.17e-46 148

Find 64 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGAGGCCTATTCTTTC+TGG 0.046570 8_2:-30202561 Msa1243730:intron
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 8_2:-30204415 Msa1243730:five_prime_UTR
GCCTTGTATTTAAATATCTA+AGG 0.240088 8_2:+30204490 None:intergenic
GTTGTTGTGACTCTTGATTT+TGG 0.256583 8_2:+30204261 None:intergenic
CACTAACTTTGGATCACTTC+TGG 0.287804 8_2:-30203005 Msa1243730:five_prime_UTR
AAGCTTTGCTTAATTATTGA+TGG 0.303969 8_2:-30201739 Msa1243730:three_prime_UTR
TTGTGGTGATGTTGTTGTTT+TGG 0.314085 8_2:+30204333 None:intergenic
AGGAATATCCTGTATATATA+TGG 0.323875 8_2:-30201878 Msa1243730:three_prime_UTR
TGCATTGAATTTGAAACCTA+TGG 0.325155 8_2:+30204294 None:intergenic
TATGGTTTACCAGATTAATT+AGG 0.325566 8_2:-30201860 Msa1243730:three_prime_UTR
ATGTTACTAGATTCAATGTT+TGG 0.338533 8_2:-30204657 None:intergenic
GCTGTATCTTGTCCTTTCCT+TGG 0.347381 8_2:-30202578 Msa1243730:CDS
ACAGAACAATGTATTTCTTA+AGG 0.354819 8_2:-30204240 Msa1243730:five_prime_UTR
CTGTGACAAAATAAGATCTT+TGG 0.367519 8_2:+30204075 None:intergenic
CTTTGTTCAAGCAAATTCTA+AGG 0.368956 8_2:-30202081 Msa1243730:CDS
TGGTATAGTTCTGAGCTTCT+AGG 0.369490 8_2:-30204212 Msa1243730:five_prime_UTR
AAAAGGAACTGCACTAACTT+TGG 0.371780 8_2:-30203016 Msa1243730:five_prime_UTR
CACATGTAAGTCTGTGGTAT+TGG 0.388973 8_2:-30201946 Msa1243730:three_prime_UTR
CTGAAGTTGTCCAGGTGAAT+AGG 0.399442 8_2:-30202016 Msa1243730:exon
GTATCTTGTCCTTTCCTTGG+AGG 0.412030 8_2:-30202575 Msa1243730:CDS
CCATGACAGGATAAAGGAAT+TGG 0.428536 8_2:-30202615 Msa1243730:intron
TTTGCTCCATGACAGGATAA+AGG 0.440137 8_2:-30202621 Msa1243730:intron
ATTCACAGACCTAATTAATC+TGG 0.444076 8_2:+30201851 None:intergenic
CTGGTAAACCATATATATAC+AGG 0.446381 8_2:+30201870 None:intergenic
CTTTCAGGCATGTGGAGCAT+TGG 0.446746 8_2:-30202120 Msa1243730:intron
GTACTAATTATAGAAGTCTA+TGG 0.447623 8_2:-30201920 Msa1243730:three_prime_UTR
TGAGATTTACCAGAAAGAAT+AGG 0.456237 8_2:+30202552 None:intergenic
GTGGTGATGGTTGTGACTAA+TGG 0.469661 8_2:+30204374 None:intergenic
TGAAGAGGATTGTGAATTTG+CGG 0.489339 8_2:-30203074 Msa1243730:five_prime_UTR
AAGGACTTCAGCGTTTCAAA+AGG 0.491123 8_2:-30203033 Msa1243730:five_prime_UTR
TTTAAGCTAAATCCCTTGCT+AGG 0.497530 8_2:+30202058 None:intergenic
ATTAATTAGGTCTGTGAATG+TGG 0.499247 8_2:-30201847 Msa1243730:three_prime_UTR
GAATGAATCTAAGAACAAAC+AGG 0.505783 8_2:+30204459 None:intergenic
AGGTTTCAAATTCAATGCAA+TGG 0.509267 8_2:-30204290 Msa1243730:five_prime_UTR
ATGTATTTCTTAAGGTTGCA+TGG 0.514798 8_2:-30204232 Msa1243730:five_prime_UTR
ACCTTAGATATTTAAATACA+AGG 0.516504 8_2:-30204491 Msa1243730:five_prime_UTR
CTAGGTTGCTGAAGTTGTCC+AGG 0.518768 8_2:-30202024 Msa1243730:CDS
GAAGCTTCTTCTTCATCAGA+TGG 0.522340 8_2:+30204164 None:intergenic
CACAACAGAAGCACGATCAA+TGG 0.522503 8_2:+30204118 None:intergenic
TAGATATTTAAATACAAGGC+AGG 0.530838 8_2:-30204487 Msa1243730:five_prime_UTR
CACAATCAGGAAAAGTATGC+AGG 0.531502 8_2:-30202222 Msa1243730:intron
CAACTATGAATCTTATGAAG+TGG 0.531678 8_2:-30202976 Msa1243730:exon
CCTGAAAACTTTCAGGCATG+TGG 0.535655 8_2:-30202128 Msa1243730:intron
CATTGATCGTGCTTCTGTTG+TGG 0.537026 8_2:-30204117 Msa1243730:five_prime_UTR
TGTGAATTTGCGGATCCAGC+GGG 0.538988 8_2:-30203064 Msa1243730:five_prime_UTR
CACATTGAATGCATATGAAG+AGG 0.540073 8_2:-30203089 Msa1243730:five_prime_UTR
AACTATGAATCTTATGAAGT+GGG 0.541276 8_2:-30202975 Msa1243730:exon
CCAGAAAGAATAGGCCTCCA+AGG 0.545523 8_2:+30202561 None:intergenic
GTAGAAGCTTATGATGTACT+AGG 0.548207 8_2:-30201898 Msa1243730:three_prime_UTR
AGGATAAAGGAATTGGTCAC+TGG 0.548719 8_2:-30202608 Msa1243730:CDS
GCAAATTCTAAGGCCTAGCA+AGG 0.551037 8_2:-30202071 Msa1243730:CDS
ATATAATTTACCTATTCACC+TGG 0.562345 8_2:+30202006 None:intergenic
CTTCTTCATCAGATGGAGAA+CGG 0.564350 8_2:+30204171 None:intergenic
GCTTAAAAGATTATGTGACT+AGG 0.578708 8_2:-30202042 Msa1243730:CDS
TTAAAATAACAGCTCTAGTG+TGG 0.582268 8_2:+30204553 None:intergenic
AAGAATAGGCCTCCAAGGAA+AGG 0.586585 8_2:+30202566 None:intergenic
AGAACAAAGAAGTGTGGTGA+TGG 0.594904 8_2:+30204361 None:intergenic
ATTATACACATGTAAGTCTG+TGG 0.609997 8_2:-30201952 Msa1243730:three_prime_UTR
AGTCCTTTAAAAGATCCCGC+TGG 0.610274 8_2:+30203049 None:intergenic
TTGTGAATTTGCGGATCCAG+CGG 0.612444 8_2:-30203065 Msa1243730:five_prime_UTR
GTTTGAAGAAGTCTCTGAGG+AGG 0.641425 8_2:+30204140 None:intergenic
CAAATTCTAAGGCCTAGCAA+GGG 0.670959 8_2:-30202070 Msa1243730:CDS
ATGGTTTGAAGAAGTCTCTG+AGG 0.694702 8_2:+30204137 None:intergenic
GTGCAAAGAACAAAGAAGTG+TGG 0.724805 8_2:+30204355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACTTCATTTTTTTTTTT+TGG - chr8_2:30201748-30201767 Msa1243730:three_prime_UTR 10.0%
!!! TAAAATTTGTTAGTTTAATC+AGG + chr8_2:30202712-30202731 None:intergenic 15.0%
!!! TCATTTTTTTTTTTTGGACA+TGG - chr8_2:30201754-30201773 Msa1243730:three_prime_UTR 20.0%
!! ACCTTAGATATTTAAATACA+AGG - chr8_2:30201870-30201889 Msa1243730:three_prime_UTR 20.0%
!!! GATTTTTTTTTGTGTTATTG+TGG + chr8_2:30202048-30202067 None:intergenic 20.0%
!! TAACACAAAAAAAAATCCAT+AGG - chr8_2:30202051-30202070 Msa1243730:CDS 20.0%
!!! TACTACTCAATAATGTTTTA+GGG - chr8_2:30203036-30203055 Msa1243730:five_prime_UTR 20.0%
!!! TTTTGTATCAGTCATTATAT+AGG + chr8_2:30203157-30203176 None:intergenic 20.0%
!!! GTATTTTGATTATAATCAGA+TGG - chr8_2:30203208-30203227 Msa1243730:intron 20.0%
!! GATTAAACTCTATTAAGTTA+AGG + chr8_2:30203611-30203630 None:intergenic 20.0%
!! ATAAAAAAACACAAGTTTCT+AGG + chr8_2:30203649-30203668 None:intergenic 20.0%
!! AATTTCATTATGTTCATCAA+TGG + chr8_2:30203865-30203884 None:intergenic 20.0%
!! ATGTTCAAATTAACATGAAT+CGG - chr8_2:30203977-30203996 Msa1243730:intron 20.0%
!!! TATTATTTTGATACACAATC+AGG - chr8_2:30204126-30204145 Msa1243730:five_prime_UTR 20.0%
!!! TTTTTTTTTGGACATGGATT+TGG - chr8_2:30201760-30201779 Msa1243730:three_prime_UTR 25.0%
! GCCTTGTATTTAAATATCTA+AGG + chr8_2:30201874-30201893 None:intergenic 25.0%
! TAGATATTTAAATACAAGGC+AGG - chr8_2:30201874-30201893 Msa1243730:three_prime_UTR 25.0%
! ACAGAACAATGTATTTCTTA+AGG - chr8_2:30202121-30202140 Msa1243730:intron 25.0%
!! TTTCATTTGATTTCTGTGTT+TGG - chr8_2:30202364-30202383 Msa1243730:intron 25.0%
!! TTCATTTGATTTCTGTGTTT+GGG - chr8_2:30202365-30202384 Msa1243730:intron 25.0%
! CATACTTAAAATTGAAGCTA+TGG + chr8_2:30202413-30202432 None:intergenic 25.0%
!!! CATAGCTTCAATTTTAAGTA+TGG - chr8_2:30202411-30202430 Msa1243730:intron 25.0%
!!! TGTCTTTTTTACACATCATT+TGG - chr8_2:30202447-30202466 Msa1243730:intron 25.0%
!! GAGAAAAAGTTGATTACAAT+CGG - chr8_2:30202663-30202682 Msa1243730:intron 25.0%
!!! ATTGCTATTTTAAGCACTTA+CGG + chr8_2:30202864-30202883 None:intergenic 25.0%
! TGCTTAAAATAGCAATACAA+AGG - chr8_2:30202868-30202887 Msa1243730:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG - chr8_2:30203035-30203054 Msa1243730:five_prime_UTR 25.0%
!!! ATAATGTTTTAGGGATTGAT+TGG - chr8_2:30203045-30203064 Msa1243730:five_prime_UTR 25.0%
! CAAAATGAAGCTAATACAAT+TGG - chr8_2:30203172-30203191 Msa1243730:intron 25.0%
! AACTATGAATCTTATGAAGT+GGG - chr8_2:30203386-30203405 Msa1243730:intron 25.0%
!! AATATAGAGTTTTGCAACTT+AGG - chr8_2:30203458-30203477 Msa1243730:intron 25.0%
! ATGTAATATCAAGAGTTACA+AGG + chr8_2:30203518-30203537 None:intergenic 25.0%
! CTCAATCTATTAGATATACA+TGG + chr8_2:30203842-30203861 None:intergenic 25.0%
! TGTTCAAATTAACATGAATC+GGG - chr8_2:30203978-30203997 Msa1243730:intron 25.0%
! ATATAATTTACCTATTCACC+TGG + chr8_2:30204358-30204377 None:intergenic 25.0%
! GTACTAATTATAGAAGTCTA+TGG - chr8_2:30204441-30204460 Msa1243730:five_prime_UTR 25.0%
! AGGAATATCCTGTATATATA+TGG - chr8_2:30204483-30204502 Msa1243730:five_prime_UTR 25.0%
! TATGGTTTACCAGATTAATT+AGG - chr8_2:30204501-30204520 Msa1243730:five_prime_UTR 25.0%
!!! CTTTTCTCTGTTATTTTTTC+TGG + chr8_2:30204548-30204567 None:intergenic 25.0%
! CAGAAAAAATAACAGAGAAA+AGG - chr8_2:30204546-30204565 Msa1243730:five_prime_UTR 25.0%
! AAGCTTTGCTTAATTATTGA+TGG - chr8_2:30204622-30204641 Msa1243730:five_prime_UTR 25.0%
! TTAAAATAACAGCTCTAGTG+TGG + chr8_2:30201811-30201830 None:intergenic 30.0%
! CCACATAAAAATGGTGATTT+TGG + chr8_2:30201835-30201854 None:intergenic 30.0%
!! CCAAAATCACCATTTTTATG+TGG - chr8_2:30201832-30201851 Msa1243730:three_prime_UTR 30.0%
TAATGCTAGCCACATAAAAA+TGG + chr8_2:30201844-30201863 None:intergenic 30.0%
GAATGAATCTAAGAACAAAC+AGG + chr8_2:30201905-30201924 None:intergenic 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG - chr8_2:30201946-30201965 Msa1243730:three_prime_UTR 30.0%
! TGCATTGAATTTGAAACCTA+TGG + chr8_2:30202070-30202089 None:intergenic 30.0%
AGGTTTCAAATTCAATGCAA+TGG - chr8_2:30202071-30202090 Msa1243730:CDS 30.0%
ATGTATTTCTTAAGGTTGCA+TGG - chr8_2:30202129-30202148 Msa1243730:intron 30.0%
CTGTGACAAAATAAGATCTT+TGG + chr8_2:30202289-30202308 None:intergenic 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG - chr8_2:30202287-30202306 Msa1243730:intron 30.0%
!!! ATGCTTTTTCTTATGAAACG+TGG - chr8_2:30202326-30202345 Msa1243730:intron 30.0%
!! TCATTTGGATGATTGATTTG+TGG - chr8_2:30202462-30202481 Msa1243730:intron 30.0%
ATTCCTAGTTACTGATAAGT+GGG - chr8_2:30202519-30202538 Msa1243730:intron 30.0%
AACGTTTATTGGGTTATGAT+TGG - chr8_2:30202559-30202578 Msa1243730:intron 30.0%
ACGTTTATTGGGTTATGATT+GGG - chr8_2:30202560-30202579 Msa1243730:intron 30.0%
!! GTATCTTTTACTTTTGAACC+AGG - chr8_2:30202980-30202999 Msa1243730:exon 30.0%
TTATAATCAGATGGTTCACA+TGG - chr8_2:30203217-30203236 Msa1243730:intron 30.0%
CAACTATGAATCTTATGAAG+TGG - chr8_2:30203385-30203404 Msa1243730:intron 30.0%
TTACATGCAACTGATGATAA+AGG - chr8_2:30203532-30203551 Msa1243730:intron 30.0%
! TCAATCTTTTTATCGAGTGT+TGG - chr8_2:30203680-30203699 Msa1243730:intron 30.0%
TGAGATTTACCAGAAAGAAT+AGG + chr8_2:30203812-30203831 None:intergenic 30.0%
TGTATTTATCTGCATTTGAC+TGG - chr8_2:30203911-30203930 Msa1243730:intron 30.0%
ACGAAAAATAAATCCAAGAG+AGG + chr8_2:30203939-30203958 None:intergenic 30.0%
! CGGGTTTTTAATAGAATATG+TGG - chr8_2:30203997-30204016 Msa1243730:intron 30.0%
TGCTGCAACATATATTAACA+TGG + chr8_2:30204091-30204110 None:intergenic 30.0%
TTAATATATGTTGCAGCAAC+TGG - chr8_2:30204093-30204112 Msa1243730:five_prime_UTR 30.0%
CTAAATTCCTGAAAACTTTC+AGG - chr8_2:30204226-30204245 Msa1243730:five_prime_UTR 30.0%
CTTTGTTCAAGCAAATTCTA+AGG - chr8_2:30204280-30204299 Msa1243730:five_prime_UTR 30.0%
GCTTAAAAGATTATGTGACT+AGG - chr8_2:30204319-30204338 Msa1243730:five_prime_UTR 30.0%
ATTATACACATGTAAGTCTG+TGG - chr8_2:30204409-30204428 Msa1243730:five_prime_UTR 30.0%
CTGGTAAACCATATATATAC+AGG + chr8_2:30204494-30204513 None:intergenic 30.0%
ATTCACAGACCTAATTAATC+TGG + chr8_2:30204513-30204532 None:intergenic 30.0%
ATTAATTAGGTCTGTGAATG+TGG - chr8_2:30204514-30204533 Msa1243730:five_prime_UTR 30.0%
!!! TTGTGGTGATGTTGTTGTTT+TGG + chr8_2:30202031-30202050 None:intergenic 35.0%
! GTTGTTGTGACTCTTGATTT+TGG + chr8_2:30202103-30202122 None:intergenic 35.0%
! TTGATTTCTGTGTTTGGGTT+TGG - chr8_2:30202370-30202389 Msa1243730:intron 35.0%
!! GATGATTGATTTGTGGAGAA+AGG - chr8_2:30202469-30202488 Msa1243730:intron 35.0%
CATGACTATTCAGAGTTGTT+AGG - chr8_2:30202492-30202511 Msa1243730:intron 35.0%
GATTCCTAGTTACTGATAAG+TGG - chr8_2:30202518-30202537 Msa1243730:intron 35.0%
CGTTTATTGGGTTATGATTG+GGG - chr8_2:30202561-30202580 Msa1243730:intron 35.0%
GTTTATTGGGTTATGATTGG+GGG - chr8_2:30202562-30202581 Msa1243730:CDS 35.0%
TTTATTGGGTTATGATTGGG+GGG - chr8_2:30202563-30202582 Msa1243730:CDS 35.0%
TCAGGAGCAATGTTGTAATA+TGG - chr8_2:30202799-30202818 Msa1243730:intron 35.0%
GTAATGCTGAGAACAAAAAG+AGG - chr8_2:30203067-30203086 Msa1243730:five_prime_UTR 35.0%
CACATTGAATGCATATGAAG+AGG - chr8_2:30203272-30203291 Msa1243730:intron 35.0%
TGAAGAGGATTGTGAATTTG+CGG - chr8_2:30203287-30203306 Msa1243730:intron 35.0%
AAAAGGAACTGCACTAACTT+TGG - chr8_2:30203345-30203364 Msa1243730:intron 35.0%
! TATGAAGTGGGAAGATTTTG+AGG - chr8_2:30203398-30203417 Msa1243730:intron 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG + chr8_2:30203433-30203452 None:intergenic 35.0%
GATGATAAAGGTTTCTGATG+CGG - chr8_2:30203544-30203563 Msa1243730:intron 35.0%
CTATTAAGTTAAGGCTGCTT+AGG + chr8_2:30203602-30203621 None:intergenic 35.0%
!! GTTTCTAGGATATGTTTAGC+AGG + chr8_2:30203635-30203654 None:intergenic 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG + chr8_2:30204273-30204292 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+AGG + chr8_2:30204306-30204325 None:intergenic 35.0%
GTAGAAGCTTATGATGTACT+AGG - chr8_2:30204463-30204482 Msa1243730:five_prime_UTR 35.0%
! AGAACAAAGAAGTGTGGTGA+TGG + chr8_2:30202003-30202022 None:intergenic 40.0%
GTGCAAAGAACAAAGAAGTG+TGG + chr8_2:30202009-30202028 None:intergenic 40.0%
!! TGGTATAGTTCTGAGCTTCT+AGG - chr8_2:30202149-30202168 Msa1243730:intron 40.0%
CTTCTTCATCAGATGGAGAA+CGG + chr8_2:30202193-30202212 None:intergenic 40.0%
GAAGCTTCTTCTTCATCAGA+TGG + chr8_2:30202200-30202219 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+AGG + chr8_2:30202227-30202246 None:intergenic 40.0%
CTACCCACTTATCAGTAACT+AGG + chr8_2:30202525-30202544 None:intergenic 40.0%
CTAGTTACTGATAAGTGGGT+AGG - chr8_2:30202523-30202542 Msa1243730:intron 40.0%
TTACTGATAAGTGGGTAGGT+CGG - chr8_2:30202527-30202546 Msa1243730:intron 40.0%
GTTAGAATAGAACAGCAACC+TGG + chr8_2:30203001-30203020 None:intergenic 40.0%
TTCAATGTGAGATCTCCTGA+GGG + chr8_2:30203261-30203280 None:intergenic 40.0%
ATTCAATGTGAGATCTCCTG+AGG + chr8_2:30203262-30203281 None:intergenic 40.0%
AAGGACTTCAGCGTTTCAAA+AGG - chr8_2:30203328-30203347 Msa1243730:intron 40.0%
CACTAACTTTGGATCACTTC+TGG - chr8_2:30203356-30203375 Msa1243730:intron 40.0%
TCATACATTTGCTCCATGAC+AGG - chr8_2:30203733-30203752 Msa1243730:intron 40.0%
TTTGCTCCATGACAGGATAA+AGG - chr8_2:30203740-30203759 Msa1243730:intron 40.0%
CCAATTCCTTTATCCTGTCA+TGG + chr8_2:30203749-30203768 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG - chr8_2:30203746-30203765 Msa1243730:intron 40.0%
AGGATAAAGGAATTGGTCAC+TGG - chr8_2:30203753-30203772 Msa1243730:intron 40.0%
! CACAATCAGGAAAAGTATGC+AGG - chr8_2:30204139-30204158 Msa1243730:five_prime_UTR 40.0%
GCATTGGAATGTGCCAAAAA+TGG - chr8_2:30204257-30204276 Msa1243730:five_prime_UTR 40.0%
!! CAAATTCTAAGGCCTAGCAA+GGG - chr8_2:30204291-30204310 Msa1243730:five_prime_UTR 40.0%
CACATGTAAGTCTGTGGTAT+TGG - chr8_2:30204415-30204434 Msa1243730:five_prime_UTR 40.0%
!! GTGGTGATGGTTGTGACTAA+TGG + chr8_2:30201990-30202009 None:intergenic 45.0%
! GTTTGAAGAAGTCTCTGAGG+AGG + chr8_2:30202224-30202243 None:intergenic 45.0%
! CACAACAGAAGCACGATCAA+TGG + chr8_2:30202246-30202265 None:intergenic 45.0%
CATTGATCGTGCTTCTGTTG+TGG - chr8_2:30202244-30202263 Msa1243730:CDS 45.0%
GCCAGGCTCAAACGTTTATT+GGG - chr8_2:30202549-30202568 Msa1243730:intron 45.0%
ACCCAATAAACGTTTGAGCC+TGG + chr8_2:30202553-30202572 None:intergenic 45.0%
AACACTTTGCTCCAACAGTG+TGG - chr8_2:30202775-30202794 Msa1243730:intron 45.0%
TTGTGAATTTGCGGATCCAG+CGG - chr8_2:30203296-30203315 Msa1243730:intron 45.0%
! GATCCAGCGGGATCTTTTAA+AGG - chr8_2:30203309-30203328 Msa1243730:intron 45.0%
! AGTCCTTTAAAAGATCCCGC+TGG + chr8_2:30203315-30203334 None:intergenic 45.0%
GCTGTATCTTGTCCTTTCCT+TGG - chr8_2:30203783-30203802 Msa1243730:intron 45.0%
GTATCTTGTCCTTTCCTTGG+AGG - chr8_2:30203786-30203805 Msa1243730:intron 45.0%
AAGAATAGGCCTCCAAGGAA+AGG + chr8_2:30203798-30203817 None:intergenic 45.0%
CATTTGACTGGAACCTCTCT+TGG - chr8_2:30203923-30203942 Msa1243730:intron 45.0%
! CCACATGCCTGAAAGTTTTC+AGG + chr8_2:30204236-30204255 None:intergenic 45.0%
CCTGAAAACTTTCAGGCATG+TGG - chr8_2:30204233-30204252 Msa1243730:five_prime_UTR 45.0%
!! GCAAATTCTAAGGCCTAGCA+AGG - chr8_2:30204290-30204309 Msa1243730:five_prime_UTR 45.0%
CTGAAGTTGTCCAGGTGAAT+AGG - chr8_2:30204345-30204364 Msa1243730:five_prime_UTR 45.0%
GGCCAGGCTCAAACGTTTAT+TGG - chr8_2:30202548-30202567 Msa1243730:intron 50.0%
TTGCTCCAACAGTGTGGTTC+AGG - chr8_2:30202781-30202800 Msa1243730:intron 50.0%
TTGCTCCTGAACCACACTGT+TGG + chr8_2:30202789-30202808 None:intergenic 50.0%
ATCTATTCCTCCCAACCCTC+AGG - chr8_2:30203243-30203262 Msa1243730:intron 50.0%
TGTGAGATCTCCTGAGGGTT+GGG + chr8_2:30203256-30203275 None:intergenic 50.0%
ATGTGAGATCTCCTGAGGGT+TGG + chr8_2:30203257-30203276 None:intergenic 50.0%
TGTGAATTTGCGGATCCAGC+GGG - chr8_2:30203297-30203316 Msa1243730:intron 50.0%
CCAGAAAGAATAGGCCTCCA+AGG + chr8_2:30203803-30203822 None:intergenic 50.0%
CCTTGGAGGCCTATTCTTTC+TGG - chr8_2:30203800-30203819 Msa1243730:intron 50.0%
CTTTCAGGCATGTGGAGCAT+TGG - chr8_2:30204241-30204260 Msa1243730:five_prime_UTR 50.0%
CTAGGTTGCTGAAGTTGTCC+AGG - chr8_2:30204337-30204356 Msa1243730:five_prime_UTR 50.0%
ACTGCATCCCGCTTTGCAGT+CGG - chr8_2:30202892-30202911 Msa1243730:intron 55.0%
TACGTCTCCGACTGCAAAGC+GGG + chr8_2:30202902-30202921 None:intergenic 55.0%
CTACGTCTCCGACTGCAAAG+CGG + chr8_2:30202903-30202922 None:intergenic 55.0%
GATAAGTGGGTAGGTCGGCC+AGG - chr8_2:30202532-30202551 Msa1243730:intron 60.0%
CGCTTTGCAGTCGGAGACGT+AGG - chr8_2:30202901-30202920 Msa1243730:intron 60.0%
GAGATCTCCTGAGGGTTGGG+AGG + chr8_2:30203253-30203272 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 30201719 30204664 30201719 ID=Msa1243730;Name=Msa1243730
chr8_2 mRNA 30201719 30204664 30201719 ID=Msa1243730-mRNA-1;Parent=Msa1243730;Name=Msa1243730-mRNA-1;_AED=0.21;_eAED=0.21;_QI=715|1|1|1|1|1|5|302|87
chr8_2 exon 30201719 30202135 30201719 ID=Msa1243730-mRNA-1:exon:10228;Parent=Msa1243730-mRNA-1
chr8_2 exon 30202223 30202274 30202223 ID=Msa1243730-mRNA-1:exon:10227;Parent=Msa1243730-mRNA-1
chr8_2 exon 30202562 30202628 30202562 ID=Msa1243730-mRNA-1:exon:10226;Parent=Msa1243730-mRNA-1
chr8_2 exon 30202964 30203118 30202964 ID=Msa1243730-mRNA-1:exon:10225;Parent=Msa1243730-mRNA-1
chr8_2 exon 30204075 30204664 30204075 ID=Msa1243730-mRNA-1:exon:10224;Parent=Msa1243730-mRNA-1
chr8_2 five_prime_UTR 30204075 30204664 30204075 ID=Msa1243730-mRNA-1:five_prime_utr;Parent=Msa1243730-mRNA-1
chr8_2 five_prime_UTR 30202994 30203118 30202994 ID=Msa1243730-mRNA-1:five_prime_utr;Parent=Msa1243730-mRNA-1
chr8_2 CDS 30202964 30202993 30202964 ID=Msa1243730-mRNA-1:cds;Parent=Msa1243730-mRNA-1
chr8_2 CDS 30202562 30202628 30202562 ID=Msa1243730-mRNA-1:cds;Parent=Msa1243730-mRNA-1
chr8_2 CDS 30202223 30202274 30202223 ID=Msa1243730-mRNA-1:cds;Parent=Msa1243730-mRNA-1
chr8_2 CDS 30202021 30202135 30202021 ID=Msa1243730-mRNA-1:cds;Parent=Msa1243730-mRNA-1
chr8_2 three_prime_UTR 30201719 30202020 30201719 ID=Msa1243730-mRNA-1:three_prime_utr;Parent=Msa1243730-mRNA-1
Gene Sequence

>Msa1243730

ATGAATCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGGCCTATTCTTTCTGCAACTGGATACACAGAATATTATTTTGATACACAATCAGGAAAAGTATGCAGGCATGTGGAGCATTGGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAGCAAGGGATTTAGCTTAAAAGATTATGTGACTAGGTTGCTGAAGTTGTCCAGGTGA

Protein sequence

>Msa1243730

MNLMKWEDFEDKGIGHWRFSCILSFPWRPILSATGYTEYYFDTQSGKVCRHVEHWNVPKMALFKQILRPSKGFSLKDYVTRLLKLSR*