AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693400 MtrunA17_Chr4g0043781 98.400 125 2 0 1 125 1 125 1.68e-89 255
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693400 AT1G31170.1 76.800 125 29 0 1 125 1 125 4.26e-58 176
Msa0693400 AT1G31170.2 76.800 125 29 0 1 125 1 125 4.26e-58 176
Msa0693400 AT1G31170.5 76.860 121 28 0 1 121 1 121 4.88e-55 168
Msa0693400 AT1G31170.3 75.200 125 29 1 1 125 1 123 1.71e-54 167
Msa0693400 AT1G31170.4 76.860 121 28 0 1 121 1 121 5.96e-54 168

Find 43 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAACTCCTCAAACTATT+TGG 0.234336 4_4:+62312599 None:intergenic
TAAAATTTAGGGGCTCTTTC+TGG 0.234797 4_4:-62312471 Msa0693400:intron
GGGGCTCTTTCTGGTGGTTC+TGG 0.256526 4_4:-62312462 Msa0693400:CDS
ATGGATAGTATTAGTGAAAT+TGG 0.282662 4_4:-62312336 Msa0693400:CDS
AAACAAAGTTCAAGAACTTA+TGG 0.307753 4_4:-62312355 Msa0693400:CDS
TGAGGAGCAAGATGATTAAA+TGG 0.356896 4_4:+62310693 None:intergenic
TGAATCTTGGCCGTTGAAAA+TGG 0.360338 4_4:-62312771 Msa0693400:five_prime_UTR
CTTTCTGGTGGTTCTGGAAG+TGG 0.365172 4_4:-62312456 Msa0693400:CDS
GAGGTTGATGGAAACTATTA+TGG 0.381219 4_4:-62311116 Msa0693400:intron
ATTGATGTGCTTGAGGTTGA+TGG 0.382760 4_4:-62311128 Msa0693400:CDS
GTTGTGGTTATAGGTTTCTC+TGG 0.391419 4_4:-62310920 Msa0693400:intron
TGGTGTGGGTCCAGTGATAC+TGG 0.431666 4_4:-62312433 Msa0693400:CDS
GTGGCACAAAAGAGACTCTA+AGG 0.431947 4_4:-62310835 Msa0693400:intron
AAATGAGTGATGCACCATTA+GGG 0.432228 4_4:+62312558 None:intergenic
GGTTCTGGAAGTGGTGGTGT+GGG 0.445849 4_4:-62312447 Msa0693400:CDS
CCACCATACGCTGCAAAATA+CGG 0.452823 4_4:-62310859 Msa0693400:CDS
TCATCTATAATATGATCAAA+CGG 0.453068 4_4:+62310654 None:intergenic
TGCAGGTTCCAAATAGTTTG+AGG 0.463009 4_4:-62312607 Msa0693400:CDS
TGGTTCTGGAAGTGGTGGTG+TGG 0.464993 4_4:-62312448 Msa0693400:CDS
TTTGATCTAGTCCTCATCAT+AGG 0.468493 4_4:+62312384 None:intergenic
TCTGCTTCATCCAACCCTAA+TGG 0.481086 4_4:-62312572 Msa0693400:intron
CATCTATAATATGATCAAAC+GGG 0.488401 4_4:+62310655 None:intergenic
TTCCTCTTGATAAGATAAGA+AGG 0.501249 4_4:-62312407 Msa0693400:CDS
AGAGGAAGTTCCAGTATCAC+TGG 0.512026 4_4:+62312423 None:intergenic
GGGAACCACTATATGCTTTG+AGG 0.512626 4_4:+62310675 None:intergenic
TACGAGGCTCACCAACGACT+TGG 0.517478 4_4:-62310887 Msa0693400:CDS
TTGCTCCTCAAAGCATATAG+TGG 0.522334 4_4:-62310680 Msa0693400:three_prime_UTR
TAGGTTTCTCTGGCTGTCAC+CGG 0.528971 4_4:-62310910 Msa0693400:CDS
GTCGTTGGTGAGCCTCGTAC+CGG 0.547692 4_4:+62310891 None:intergenic
AATTTAGGGGCTCTTTCTGG+TGG 0.550422 4_4:-62312468 Msa0693400:intron
GGCCTTCTTATCTTATCAAG+AGG 0.554502 4_4:+62312405 None:intergenic
TCTGGTGGTTCTGGAAGTGG+TGG 0.571088 4_4:-62312453 Msa0693400:CDS
CTCTGGCTGTCACCGGTACG+AGG 0.572203 4_4:-62310903 Msa0693400:CDS
ATATTATCACATTACAAGCA+TGG 0.575581 4_4:+62312744 None:intergenic
AATGTTTCTTCTTAGTGACA+AGG 0.605571 4_4:-62310598 Msa0693400:three_prime_UTR
ATGTTTCTTCTTAGTGACAA+GGG 0.607569 4_4:-62310597 Msa0693400:three_prime_UTR
TGGTGGGGAGTCCAAGTCGT+TGG 0.622695 4_4:+62310876 None:intergenic
AGATAAGAAGGCCTATGATG+AGG 0.627844 4_4:-62312395 Msa0693400:CDS
GAGTGATGCACCATTAGGGT+TGG 0.637639 4_4:+62312562 None:intergenic
GATGCAGATTGATGTGCTTG+AGG 0.652589 4_4:-62311135 Msa0693400:intron
TCTTGGCCGTTGAAAATGGT+GGG 0.667250 4_4:-62312767 Msa0693400:five_prime_UTR
ATCTTGGCCGTTGAAAATGG+TGG 0.694115 4_4:-62312768 Msa0693400:five_prime_UTR
ATACGCTGCAAAATACGGCG+TGG 0.718853 4_4:-62310854 Msa0693400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATGTTAAAATTTAG+GGG - chr4_4:62310766-62310785 Msa0693400:intron 10.0%
!!! TATTTTTAAAATTACAGTTT+TGG - chr4_4:62311435-62311454 Msa0693400:intron 10.0%
!! AAAAAATAAAATAAGAATTG+GGG - chr4_4:62311758-62311777 Msa0693400:intron 10.0%
!! TTAATTATGTTAAAATTTAG+GGG - chr4_4:62310766-62310785 Msa0693400:intron 10.0%
!!! TATTTTTAAAATTACAGTTT+TGG - chr4_4:62311435-62311454 Msa0693400:intron 10.0%
!! AAAAAATAAAATAAGAATTG+GGG - chr4_4:62311758-62311777 Msa0693400:intron 10.0%
!! CAAAATCTATTTATACTTTA+TGG - chr4_4:62310982-62311001 Msa0693400:intron 15.0%
!!! TCTTTATTAGATTTTTTCTT+AGG - chr4_4:62311092-62311111 Msa0693400:intron 15.0%
!! TAATTACGAATGAAATATTT+AGG - chr4_4:62311337-62311356 Msa0693400:intron 15.0%
!! AATTACGAATGAAATATTTA+GGG - chr4_4:62311338-62311357 Msa0693400:intron 15.0%
!!! AAAAACTAAAAAAGAGTTTT+TGG + chr4_4:62311381-62311400 None:intergenic 15.0%
!!! TGTTTTGAATTTTTTAGTTT+TGG - chr4_4:62311462-62311481 Msa0693400:intron 15.0%
!!! GTTTTGAATTTTTTAGTTTT+GGG - chr4_4:62311463-62311482 Msa0693400:intron 15.0%
!!! TTTTGAATTTTTTAGTTTTG+GGG - chr4_4:62311464-62311483 Msa0693400:intron 15.0%
!! AAAAAACTAAAACATGTAAA+AGG - chr4_4:62311490-62311509 Msa0693400:intron 15.0%
!!! TTATTTTAACAAGAAATAGT+AGG + chr4_4:62312036-62312055 None:intergenic 15.0%
!!! ATTATGAATTGTATTCTTTT+TGG + chr4_4:62312697-62312716 None:intergenic 15.0%
!! AAAAATCATGTATTAGAAAT+TGG + chr4_4:62312720-62312739 None:intergenic 15.0%
!! CAAAATCTATTTATACTTTA+TGG - chr4_4:62310982-62311001 Msa0693400:intron 15.0%
!!! TCTTTATTAGATTTTTTCTT+AGG - chr4_4:62311092-62311111 Msa0693400:intron 15.0%
!! TAATTACGAATGAAATATTT+AGG - chr4_4:62311337-62311356 Msa0693400:intron 15.0%
!! AATTACGAATGAAATATTTA+GGG - chr4_4:62311338-62311357 Msa0693400:intron 15.0%
!!! AAAAACTAAAAAAGAGTTTT+TGG + chr4_4:62311381-62311400 None:intergenic 15.0%
!!! TGTTTTGAATTTTTTAGTTT+TGG - chr4_4:62311462-62311481 Msa0693400:intron 15.0%
!!! GTTTTGAATTTTTTAGTTTT+GGG - chr4_4:62311463-62311482 Msa0693400:intron 15.0%
!!! TTTTGAATTTTTTAGTTTTG+GGG - chr4_4:62311464-62311483 Msa0693400:intron 15.0%
!! AAAAAACTAAAACATGTAAA+AGG - chr4_4:62311490-62311509 Msa0693400:intron 15.0%
!!! TTATTTTAACAAGAAATAGT+AGG + chr4_4:62312036-62312055 None:intergenic 15.0%
!!! ATTATGAATTGTATTCTTTT+TGG + chr4_4:62312697-62312716 None:intergenic 15.0%
!! AAAAATCATGTATTAGAAAT+TGG + chr4_4:62312720-62312739 None:intergenic 15.0%
!!! CAAGATATTTTTTTTTCTTG+TGG + chr4_4:62310587-62310606 None:intergenic 20.0%
!! TTAATATCAAAGAAAATGAC+AGG + chr4_4:62311291-62311310 None:intergenic 20.0%
!!! TTACATTTTCTTTGATGAAT+TGG - chr4_4:62311583-62311602 Msa0693400:intron 20.0%
!! AATCTTGAAAATAAGTTAGT+CGG + chr4_4:62312269-62312288 None:intergenic 20.0%
!!! ATATCGATTATATTATGTTG+TGG - chr4_4:62312311-62312330 Msa0693400:intron 20.0%
!! TTATATTATGTTGTGGTTAT+AGG - chr4_4:62312318-62312337 Msa0693400:intron 20.0%
!! TCATCTATAATATGATCAAA+CGG + chr4_4:62312596-62312615 None:intergenic 20.0%
!!! CAAGATATTTTTTTTTCTTG+TGG + chr4_4:62310587-62310606 None:intergenic 20.0%
!! TTAATATCAAAGAAAATGAC+AGG + chr4_4:62311291-62311310 None:intergenic 20.0%
!!! TTACATTTTCTTTGATGAAT+TGG - chr4_4:62311583-62311602 Msa0693400:intron 20.0%
!! AATCTTGAAAATAAGTTAGT+CGG + chr4_4:62312269-62312288 None:intergenic 20.0%
!!! ATATCGATTATATTATGTTG+TGG - chr4_4:62312311-62312330 Msa0693400:intron 20.0%
!! TTATATTATGTTGTGGTTAT+AGG - chr4_4:62312318-62312337 Msa0693400:intron 20.0%
!! TCATCTATAATATGATCAAA+CGG + chr4_4:62312596-62312615 None:intergenic 20.0%
! ATATTATCACATTACAAGCA+TGG + chr4_4:62310506-62310525 None:intergenic 25.0%
!! GATTCACATTCTTAATTTTC+TGG - chr4_4:62310545-62310564 Msa0693400:three_prime_UTR 25.0%
! AAAAAAAATATCTTGCAGAG+AGG - chr4_4:62310592-62310611 Msa0693400:three_prime_UTR 25.0%
! AAACAAAGTTCAAGAACTTA+TGG - chr4_4:62310892-62310911 Msa0693400:CDS 25.0%
! ATGGATAGTATTAGTGAAAT+TGG - chr4_4:62310911-62310930 Msa0693400:intron 25.0%
! TGTTGTATATAAGTATACCA+TGG - chr4_4:62311023-62311042 Msa0693400:intron 25.0%
! AATGACTATTAGAACCTTAA+GGG + chr4_4:62311063-62311082 None:intergenic 25.0%
! AAATGACTATTAGAACCTTA+AGG + chr4_4:62311064-62311083 None:intergenic 25.0%
! TTATGGAAAATGGTGATATT+TGG - chr4_4:62311160-62311179 Msa0693400:intron 25.0%
! TATGGAAAATGGTGATATTT+GGG - chr4_4:62311161-62311180 Msa0693400:intron 25.0%
! ATTGTATGTAACTACGTATT+CGG - chr4_4:62311196-62311215 Msa0693400:intron 25.0%
! ATATTAATCTTTGTAGCGAA+GGG - chr4_4:62311304-62311323 Msa0693400:intron 25.0%
! TGTTGAATACTATTGAGATT+AGG - chr4_4:62311899-62311918 Msa0693400:intron 25.0%
! GTTGAATACTATTGAGATTA+GGG - chr4_4:62311900-62311919 Msa0693400:intron 25.0%
! TTGAATACTATTGAGATTAG+GGG - chr4_4:62311901-62311920 Msa0693400:intron 25.0%
! TTCATCAAAATTATCTTGCT+CGG - chr4_4:62312064-62312083 Msa0693400:intron 25.0%
! TAAACAATCAAAACAGAACT+AGG - chr4_4:62312234-62312253 Msa0693400:intron 25.0%
!! CTAAGGTTAGTTAATATGTT+TGG - chr4_4:62312429-62312448 Msa0693400:CDS 25.0%
! CATCTATAATATGATCAAAC+GGG + chr4_4:62312595-62312614 None:intergenic 25.0%
! ATATTATCACATTACAAGCA+TGG + chr4_4:62310506-62310525 None:intergenic 25.0%
!! GATTCACATTCTTAATTTTC+TGG - chr4_4:62310545-62310564 Msa0693400:three_prime_UTR 25.0%
! AAAAAAAATATCTTGCAGAG+AGG - chr4_4:62310592-62310611 Msa0693400:three_prime_UTR 25.0%
! AAACAAAGTTCAAGAACTTA+TGG - chr4_4:62310892-62310911 Msa0693400:CDS 25.0%
! ATGGATAGTATTAGTGAAAT+TGG - chr4_4:62310911-62310930 Msa0693400:intron 25.0%
! TGTTGTATATAAGTATACCA+TGG - chr4_4:62311023-62311042 Msa0693400:intron 25.0%
! AATGACTATTAGAACCTTAA+GGG + chr4_4:62311063-62311082 None:intergenic 25.0%
! AAATGACTATTAGAACCTTA+AGG + chr4_4:62311064-62311083 None:intergenic 25.0%
! TTATGGAAAATGGTGATATT+TGG - chr4_4:62311160-62311179 Msa0693400:intron 25.0%
! TATGGAAAATGGTGATATTT+GGG - chr4_4:62311161-62311180 Msa0693400:intron 25.0%
! ATTGTATGTAACTACGTATT+CGG - chr4_4:62311196-62311215 Msa0693400:intron 25.0%
! ATATTAATCTTTGTAGCGAA+GGG - chr4_4:62311304-62311323 Msa0693400:intron 25.0%
! TGTTGAATACTATTGAGATT+AGG - chr4_4:62311899-62311918 Msa0693400:intron 25.0%
! GTTGAATACTATTGAGATTA+GGG - chr4_4:62311900-62311919 Msa0693400:intron 25.0%
! TTGAATACTATTGAGATTAG+GGG - chr4_4:62311901-62311920 Msa0693400:intron 25.0%
! TTCATCAAAATTATCTTGCT+CGG - chr4_4:62312064-62312083 Msa0693400:intron 25.0%
! TAAACAATCAAAACAGAACT+AGG - chr4_4:62312234-62312253 Msa0693400:intron 25.0%
!! CTAAGGTTAGTTAATATGTT+TGG - chr4_4:62312429-62312448 Msa0693400:CDS 25.0%
! CATCTATAATATGATCAAAC+GGG + chr4_4:62312595-62312614 None:intergenic 25.0%
TTCCTCTTGATAAGATAAGA+AGG - chr4_4:62310840-62310859 Msa0693400:CDS 30.0%
ATATGCAAAAGAGAGAGTAA+GGG + chr4_4:62310955-62310974 None:intergenic 30.0%
AATATGCAAAAGAGAGAGTA+AGG + chr4_4:62310956-62310975 None:intergenic 30.0%
ATTTAAATAGAAGCCCCTTA+AGG - chr4_4:62311046-62311065 Msa0693400:intron 30.0%
ATGACTATTAGAACCTTAAG+GGG + chr4_4:62311062-62311081 None:intergenic 30.0%
TCACATACAGTTATGGAAAA+TGG - chr4_4:62311150-62311169 Msa0693400:intron 30.0%
GATATTAATCTTTGTAGCGA+AGG - chr4_4:62311303-62311322 Msa0693400:intron 30.0%
!!! TTTTGGAAAGTGTTTCAAAC+AGG + chr4_4:62311364-62311383 None:intergenic 30.0%
AGACTTAGAGAAAATGGTAA+AGG + chr4_4:62311630-62311649 None:intergenic 30.0%
! TACCATTTTCTCTAAGTCTT+AGG - chr4_4:62311631-62311650 Msa0693400:intron 30.0%
AACCTAAGACTTAGAGAAAA+TGG + chr4_4:62311636-62311655 None:intergenic 30.0%
ATAGGAATTGTTGACACATA+GGG + chr4_4:62311665-62311684 None:intergenic 30.0%
TATAGAACATACAGTGAGAA+TGG + chr4_4:62311862-62311881 None:intergenic 30.0%
TCTCAATAGTATTCAACAGT+GGG + chr4_4:62311897-62311916 None:intergenic 30.0%
ATCTCAATAGTATTCAACAG+TGG + chr4_4:62311898-62311917 None:intergenic 30.0%
TGAATACTATTGAGATTAGG+GGG - chr4_4:62311902-62311921 Msa0693400:intron 30.0%
! ACTTATGACTCTGTTTGTTA+AGG - chr4_4:62311930-62311949 Msa0693400:intron 30.0%
! CTTATGACTCTGTTTGTTAA+GGG - chr4_4:62311931-62311950 Msa0693400:intron 30.0%
! GATTTTCTTGCATTTTGTGT+TGG - chr4_4:62311996-62312015 Msa0693400:intron 30.0%
! ATGGTATGTACTTTTCTGAA+TGG - chr4_4:62312150-62312169 Msa0693400:intron 30.0%
ATTGTTTATAGCGATAAGCA+CGG + chr4_4:62312222-62312241 None:intergenic 30.0%
! CTAACTACAAATGAAAGCAT+TGG - chr4_4:62312452-62312471 Msa0693400:CDS 30.0%
AATGTTTCTTCTTAGTGACA+AGG - chr4_4:62312649-62312668 Msa0693400:five_prime_UTR 30.0%
ATGTTTCTTCTTAGTGACAA+GGG - chr4_4:62312650-62312669 Msa0693400:five_prime_UTR 30.0%
TTCCTCTTGATAAGATAAGA+AGG - chr4_4:62310840-62310859 Msa0693400:CDS 30.0%
ATATGCAAAAGAGAGAGTAA+GGG + chr4_4:62310955-62310974 None:intergenic 30.0%
AATATGCAAAAGAGAGAGTA+AGG + chr4_4:62310956-62310975 None:intergenic 30.0%
ATTTAAATAGAAGCCCCTTA+AGG - chr4_4:62311046-62311065 Msa0693400:intron 30.0%
ATGACTATTAGAACCTTAAG+GGG + chr4_4:62311062-62311081 None:intergenic 30.0%
TCACATACAGTTATGGAAAA+TGG - chr4_4:62311150-62311169 Msa0693400:intron 30.0%
GATATTAATCTTTGTAGCGA+AGG - chr4_4:62311303-62311322 Msa0693400:intron 30.0%
!!! TTTTGGAAAGTGTTTCAAAC+AGG + chr4_4:62311364-62311383 None:intergenic 30.0%
AGACTTAGAGAAAATGGTAA+AGG + chr4_4:62311630-62311649 None:intergenic 30.0%
! TACCATTTTCTCTAAGTCTT+AGG - chr4_4:62311631-62311650 Msa0693400:intron 30.0%
AACCTAAGACTTAGAGAAAA+TGG + chr4_4:62311636-62311655 None:intergenic 30.0%
ATAGGAATTGTTGACACATA+GGG + chr4_4:62311665-62311684 None:intergenic 30.0%
TATAGAACATACAGTGAGAA+TGG + chr4_4:62311862-62311881 None:intergenic 30.0%
TCTCAATAGTATTCAACAGT+GGG + chr4_4:62311897-62311916 None:intergenic 30.0%
ATCTCAATAGTATTCAACAG+TGG + chr4_4:62311898-62311917 None:intergenic 30.0%
TGAATACTATTGAGATTAGG+GGG - chr4_4:62311902-62311921 Msa0693400:intron 30.0%
! ACTTATGACTCTGTTTGTTA+AGG - chr4_4:62311930-62311949 Msa0693400:intron 30.0%
! CTTATGACTCTGTTTGTTAA+GGG - chr4_4:62311931-62311950 Msa0693400:intron 30.0%
! GATTTTCTTGCATTTTGTGT+TGG - chr4_4:62311996-62312015 Msa0693400:intron 30.0%
! ATGGTATGTACTTTTCTGAA+TGG - chr4_4:62312150-62312169 Msa0693400:intron 30.0%
ATTGTTTATAGCGATAAGCA+CGG + chr4_4:62312222-62312241 None:intergenic 30.0%
! CTAACTACAAATGAAAGCAT+TGG - chr4_4:62312452-62312471 Msa0693400:CDS 30.0%
AATGTTTCTTCTTAGTGACA+AGG - chr4_4:62312649-62312668 Msa0693400:five_prime_UTR 30.0%
ATGTTTCTTCTTAGTGACAA+GGG - chr4_4:62312650-62312669 Msa0693400:five_prime_UTR 30.0%
TGCAGAGAGGAAGAAAAAAA+TGG - chr4_4:62310605-62310624 Msa0693400:three_prime_UTR 35.0%
! AATGGCAAATTTTGTTCTGC+AGG - chr4_4:62310623-62310642 Msa0693400:three_prime_UTR 35.0%
GTGAAACTCCTCAAACTATT+TGG + chr4_4:62310651-62310670 None:intergenic 35.0%
AAATGAGTGATGCACCATTA+GGG + chr4_4:62310692-62310711 None:intergenic 35.0%
AAAATGAGTGATGCACCATT+AGG + chr4_4:62310693-62310712 None:intergenic 35.0%
TAAAATTTAGGGGCTCTTTC+TGG - chr4_4:62310776-62310795 Msa0693400:intron 35.0%
TTTGATCTAGTCCTCATCAT+AGG + chr4_4:62310866-62310885 None:intergenic 35.0%
TGTCAAGTCACATACAGTTA+TGG - chr4_4:62311143-62311162 Msa0693400:intron 35.0%
TATGTAACTACGTATTCGGT+TGG - chr4_4:62311200-62311219 Msa0693400:intron 35.0%
GGTCTTCTGATCTACATAAA+AGG + chr4_4:62311609-62311628 None:intergenic 35.0%
CATAGGAATTGTTGACACAT+AGG + chr4_4:62311666-62311685 None:intergenic 35.0%
TGTGTCAACAATTCCTATGT+TGG - chr4_4:62311667-62311686 Msa0693400:intron 35.0%
GTGTCAACAATTCCTATGTT+GGG - chr4_4:62311668-62311687 Msa0693400:intron 35.0%
TGTGTGCATGCAATCAAAAT+TGG - chr4_4:62311788-62311807 Msa0693400:intron 35.0%
! AATTGGTCTGTAGTTAGAGA+TGG - chr4_4:62311805-62311824 Msa0693400:intron 35.0%
!! GAGGTTGATGGAAACTATTA+TGG - chr4_4:62312131-62312150 Msa0693400:intron 35.0%
TTTCAAGATTCTGCTTACAC+TGG - chr4_4:62312279-62312298 Msa0693400:intron 35.0%
ATATTCGTTTCTCATCGTGT+AGG - chr4_4:62312507-62312526 Msa0693400:intron 35.0%
TGAGGAGCAAGATGATTAAA+TGG + chr4_4:62312557-62312576 None:intergenic 35.0%
TGCAGAGAGGAAGAAAAAAA+TGG - chr4_4:62310605-62310624 Msa0693400:three_prime_UTR 35.0%
! AATGGCAAATTTTGTTCTGC+AGG - chr4_4:62310623-62310642 Msa0693400:three_prime_UTR 35.0%
GTGAAACTCCTCAAACTATT+TGG + chr4_4:62310651-62310670 None:intergenic 35.0%
AAATGAGTGATGCACCATTA+GGG + chr4_4:62310692-62310711 None:intergenic 35.0%
AAAATGAGTGATGCACCATT+AGG + chr4_4:62310693-62310712 None:intergenic 35.0%
TAAAATTTAGGGGCTCTTTC+TGG - chr4_4:62310776-62310795 Msa0693400:intron 35.0%
TTTGATCTAGTCCTCATCAT+AGG + chr4_4:62310866-62310885 None:intergenic 35.0%
TGTCAAGTCACATACAGTTA+TGG - chr4_4:62311143-62311162 Msa0693400:intron 35.0%
TATGTAACTACGTATTCGGT+TGG - chr4_4:62311200-62311219 Msa0693400:intron 35.0%
GGTCTTCTGATCTACATAAA+AGG + chr4_4:62311609-62311628 None:intergenic 35.0%
CATAGGAATTGTTGACACAT+AGG + chr4_4:62311666-62311685 None:intergenic 35.0%
TGTGTCAACAATTCCTATGT+TGG - chr4_4:62311667-62311686 Msa0693400:intron 35.0%
GTGTCAACAATTCCTATGTT+GGG - chr4_4:62311668-62311687 Msa0693400:intron 35.0%
TGTGTGCATGCAATCAAAAT+TGG - chr4_4:62311788-62311807 Msa0693400:intron 35.0%
! AATTGGTCTGTAGTTAGAGA+TGG - chr4_4:62311805-62311824 Msa0693400:intron 35.0%
!! GAGGTTGATGGAAACTATTA+TGG - chr4_4:62312131-62312150 Msa0693400:intron 35.0%
TTTCAAGATTCTGCTTACAC+TGG - chr4_4:62312279-62312298 Msa0693400:intron 35.0%
ATATTCGTTTCTCATCGTGT+AGG - chr4_4:62312507-62312526 Msa0693400:intron 35.0%
TGAGGAGCAAGATGATTAAA+TGG + chr4_4:62312557-62312576 None:intergenic 35.0%
TGAATCTTGGCCGTTGAAAA+TGG - chr4_4:62310476-62310495 Msa0693400:three_prime_UTR 40.0%
TGCAGGTTCCAAATAGTTTG+AGG - chr4_4:62310640-62310659 Msa0693400:three_prime_UTR 40.0%
GGCCTTCTTATCTTATCAAG+AGG + chr4_4:62310845-62310864 None:intergenic 40.0%
AGATAAGAAGGCCTATGATG+AGG - chr4_4:62310852-62310871 Msa0693400:CDS 40.0%
AAGAGAGAGTAAGGGATTAC+AGG + chr4_4:62310947-62310966 None:intergenic 40.0%
GGGGCTTCTATTTAAATCCA+TGG + chr4_4:62311043-62311062 None:intergenic 40.0%
TTAATCTTTGTAGCGAAGGG+TGG - chr4_4:62311307-62311326 Msa0693400:intron 40.0%
TAATCTTTGTAGCGAAGGGT+GGG - chr4_4:62311308-62311327 Msa0693400:intron 40.0%
AGGATAACCATTGTGAAGAG+AGG - chr4_4:62311510-62311529 Msa0693400:intron 40.0%
TACAAGTCCTCTCTTCACAA+TGG + chr4_4:62311520-62311539 None:intergenic 40.0%
! AGTATGGATTGACCCAACAT+AGG + chr4_4:62311683-62311702 None:intergenic 40.0%
GGTGAATTGAAGCTAGAGTA+TGG + chr4_4:62311699-62311718 None:intergenic 40.0%
AGTGGTAGTTTAATCAGCAG+AGG + chr4_4:62311835-62311854 None:intergenic 40.0%
TACAGTGAGAATGGCTATAG+TGG + chr4_4:62311853-62311872 None:intergenic 40.0%
ATTGATGTGCTTGAGGTTGA+TGG - chr4_4:62312119-62312138 Msa0693400:intron 40.0%
TTTATAGCGATAAGCACGGA+CGG + chr4_4:62312218-62312237 None:intergenic 40.0%
GTTGTGGTTATAGGTTTCTC+TGG - chr4_4:62312327-62312346 Msa0693400:CDS 40.0%
TTGCTCCTCAAAGCATATAG+TGG - chr4_4:62312567-62312586 Msa0693400:intron 40.0%
TGAATCTTGGCCGTTGAAAA+TGG - chr4_4:62310476-62310495 Msa0693400:three_prime_UTR 40.0%
TGCAGGTTCCAAATAGTTTG+AGG - chr4_4:62310640-62310659 Msa0693400:three_prime_UTR 40.0%
GGCCTTCTTATCTTATCAAG+AGG + chr4_4:62310845-62310864 None:intergenic 40.0%
AGATAAGAAGGCCTATGATG+AGG - chr4_4:62310852-62310871 Msa0693400:CDS 40.0%
AAGAGAGAGTAAGGGATTAC+AGG + chr4_4:62310947-62310966 None:intergenic 40.0%
GGGGCTTCTATTTAAATCCA+TGG + chr4_4:62311043-62311062 None:intergenic 40.0%
TTAATCTTTGTAGCGAAGGG+TGG - chr4_4:62311307-62311326 Msa0693400:intron 40.0%
TAATCTTTGTAGCGAAGGGT+GGG - chr4_4:62311308-62311327 Msa0693400:intron 40.0%
AGGATAACCATTGTGAAGAG+AGG - chr4_4:62311510-62311529 Msa0693400:intron 40.0%
TACAAGTCCTCTCTTCACAA+TGG + chr4_4:62311520-62311539 None:intergenic 40.0%
! AGTATGGATTGACCCAACAT+AGG + chr4_4:62311683-62311702 None:intergenic 40.0%
GGTGAATTGAAGCTAGAGTA+TGG + chr4_4:62311699-62311718 None:intergenic 40.0%
AGTGGTAGTTTAATCAGCAG+AGG + chr4_4:62311835-62311854 None:intergenic 40.0%
TACAGTGAGAATGGCTATAG+TGG + chr4_4:62311853-62311872 None:intergenic 40.0%
ATTGATGTGCTTGAGGTTGA+TGG - chr4_4:62312119-62312138 Msa0693400:intron 40.0%
TTTATAGCGATAAGCACGGA+CGG + chr4_4:62312218-62312237 None:intergenic 40.0%
GTTGTGGTTATAGGTTTCTC+TGG - chr4_4:62312327-62312346 Msa0693400:CDS 40.0%
TTGCTCCTCAAAGCATATAG+TGG - chr4_4:62312567-62312586 Msa0693400:intron 40.0%
ATCTTGGCCGTTGAAAATGG+TGG - chr4_4:62310479-62310498 Msa0693400:three_prime_UTR 45.0%
TCTTGGCCGTTGAAAATGGT+GGG - chr4_4:62310480-62310499 Msa0693400:three_prime_UTR 45.0%
TCTGCTTCATCCAACCCTAA+TGG - chr4_4:62310675-62310694 Msa0693400:three_prime_UTR 45.0%
AATTTAGGGGCTCTTTCTGG+TGG - chr4_4:62310779-62310798 Msa0693400:intron 45.0%
AGAGGAAGTTCCAGTATCAC+TGG + chr4_4:62310827-62310846 None:intergenic 45.0%
GCACGGACACTTGTGATTAA+AGG + chr4_4:62311242-62311261 None:intergenic 45.0%
AAGTGTCCGTGCTACATAGT+TGG - chr4_4:62311250-62311269 Msa0693400:intron 45.0%
GTGTGTCCAACTATGTAGCA+CGG + chr4_4:62311259-62311278 None:intergenic 45.0%
! TCTAGCTTCAATTCACCTGC+TGG - chr4_4:62311702-62311721 Msa0693400:intron 45.0%
GATGCAGATTGATGTGCTTG+AGG - chr4_4:62312112-62312131 Msa0693400:intron 45.0%
! GTATTTTGCAGCGTATGGTG+GGG + chr4_4:62312389-62312408 None:intergenic 45.0%
! CGTATTTTGCAGCGTATGGT+GGG + chr4_4:62312390-62312409 None:intergenic 45.0%
CCACCATACGCTGCAAAATA+CGG - chr4_4:62312388-62312407 Msa0693400:CDS 45.0%
GTGGCACAAAAGAGACTCTA+AGG - chr4_4:62312412-62312431 Msa0693400:CDS 45.0%
GGGAACCACTATATGCTTTG+AGG + chr4_4:62312575-62312594 None:intergenic 45.0%
ATCTTGGCCGTTGAAAATGG+TGG - chr4_4:62310479-62310498 Msa0693400:three_prime_UTR 45.0%
TCTTGGCCGTTGAAAATGGT+GGG - chr4_4:62310480-62310499 Msa0693400:three_prime_UTR 45.0%
TCTGCTTCATCCAACCCTAA+TGG - chr4_4:62310675-62310694 Msa0693400:three_prime_UTR 45.0%
AATTTAGGGGCTCTTTCTGG+TGG - chr4_4:62310779-62310798 Msa0693400:intron 45.0%
AGAGGAAGTTCCAGTATCAC+TGG + chr4_4:62310827-62310846 None:intergenic 45.0%
GCACGGACACTTGTGATTAA+AGG + chr4_4:62311242-62311261 None:intergenic 45.0%
AAGTGTCCGTGCTACATAGT+TGG - chr4_4:62311250-62311269 Msa0693400:intron 45.0%
GTGTGTCCAACTATGTAGCA+CGG + chr4_4:62311259-62311278 None:intergenic 45.0%
! TCTAGCTTCAATTCACCTGC+TGG - chr4_4:62311702-62311721 Msa0693400:intron 45.0%
GATGCAGATTGATGTGCTTG+AGG - chr4_4:62312112-62312131 Msa0693400:intron 45.0%
! GTATTTTGCAGCGTATGGTG+GGG + chr4_4:62312389-62312408 None:intergenic 45.0%
! CGTATTTTGCAGCGTATGGT+GGG + chr4_4:62312390-62312409 None:intergenic 45.0%
CCACCATACGCTGCAAAATA+CGG - chr4_4:62312388-62312407 Msa0693400:CDS 45.0%
GTGGCACAAAAGAGACTCTA+AGG - chr4_4:62312412-62312431 Msa0693400:CDS 45.0%
GGGAACCACTATATGCTTTG+AGG + chr4_4:62312575-62312594 None:intergenic 45.0%
!! TATTAATTATGTTAAAATTT+AGG - chr4_4:62310764-62310783 Msa0693400:intron 5.0%
!! ATTAATTATGTTAAAATTTA+GGG - chr4_4:62310765-62310784 Msa0693400:intron 5.0%
!!! ATTCTTATTTTATTTTTTTT+TGG + chr4_4:62311756-62311775 None:intergenic 5.0%
!! AAAAAAAATAAAATAAGAAT+TGG - chr4_4:62311756-62311775 Msa0693400:intron 5.0%
!! AAAAAAATAAAATAAGAATT+GGG - chr4_4:62311757-62311776 Msa0693400:intron 5.0%
!! TATTAATTATGTTAAAATTT+AGG - chr4_4:62310764-62310783 Msa0693400:intron 5.0%
!! ATTAATTATGTTAAAATTTA+GGG - chr4_4:62310765-62310784 Msa0693400:intron 5.0%
!!! ATTCTTATTTTATTTTTTTT+TGG + chr4_4:62311756-62311775 None:intergenic 5.0%
!! AAAAAAAATAAAATAAGAAT+TGG - chr4_4:62311756-62311775 Msa0693400:intron 5.0%
!! AAAAAAATAAAATAAGAATT+GGG - chr4_4:62311757-62311776 Msa0693400:intron 5.0%
! GCATGGCCCACCATTTTCAA+CGG + chr4_4:62310489-62310508 None:intergenic 50.0%
GAGTGATGCACCATTAGGGT+TGG + chr4_4:62310688-62310707 None:intergenic 50.0%
!! CTTTCTGGTGGTTCTGGAAG+TGG - chr4_4:62310791-62310810 Msa0693400:intron 50.0%
AGCTTCAATTCACCTGCTGG+TGG - chr4_4:62311705-62311724 Msa0693400:intron 50.0%
TCAATTCACCTGCTGGTGGA+CGG - chr4_4:62311709-62311728 Msa0693400:intron 50.0%
TAGGTTTCTCTGGCTGTCAC+CGG - chr4_4:62312337-62312356 Msa0693400:CDS 50.0%
! CCGTATTTTGCAGCGTATGG+TGG + chr4_4:62312391-62312410 None:intergenic 50.0%
! ACGCCGTATTTTGCAGCGTA+TGG + chr4_4:62312394-62312413 None:intergenic 50.0%
ATACGCTGCAAAATACGGCG+TGG - chr4_4:62312393-62312412 Msa0693400:CDS 50.0%
! GCATGGCCCACCATTTTCAA+CGG + chr4_4:62310489-62310508 None:intergenic 50.0%
GAGTGATGCACCATTAGGGT+TGG + chr4_4:62310688-62310707 None:intergenic 50.0%
!! CTTTCTGGTGGTTCTGGAAG+TGG - chr4_4:62310791-62310810 Msa0693400:intron 50.0%
AGCTTCAATTCACCTGCTGG+TGG - chr4_4:62311705-62311724 Msa0693400:intron 50.0%
TCAATTCACCTGCTGGTGGA+CGG - chr4_4:62311709-62311728 Msa0693400:intron 50.0%
TAGGTTTCTCTGGCTGTCAC+CGG - chr4_4:62312337-62312356 Msa0693400:CDS 50.0%
! CCGTATTTTGCAGCGTATGG+TGG + chr4_4:62312391-62312410 None:intergenic 50.0%
! ACGCCGTATTTTGCAGCGTA+TGG + chr4_4:62312394-62312413 None:intergenic 50.0%
ATACGCTGCAAAATACGGCG+TGG - chr4_4:62312393-62312412 Msa0693400:CDS 50.0%
!! TCTGGTGGTTCTGGAAGTGG+TGG - chr4_4:62310794-62310813 Msa0693400:intron 55.0%
!! TGGTTCTGGAAGTGGTGGTG+TGG - chr4_4:62310799-62310818 Msa0693400:intron 55.0%
!! GGTTCTGGAAGTGGTGGTGT+GGG - chr4_4:62310800-62310819 Msa0693400:intron 55.0%
TGGTGTGGGTCCAGTGATAC+TGG - chr4_4:62310814-62310833 Msa0693400:intron 55.0%
TACGAGGCTCACCAACGACT+TGG - chr4_4:62312360-62312379 Msa0693400:CDS 55.0%
!! TCTGGTGGTTCTGGAAGTGG+TGG - chr4_4:62310794-62310813 Msa0693400:intron 55.0%
!! TGGTTCTGGAAGTGGTGGTG+TGG - chr4_4:62310799-62310818 Msa0693400:intron 55.0%
!! GGTTCTGGAAGTGGTGGTGT+GGG - chr4_4:62310800-62310819 Msa0693400:intron 55.0%
TGGTGTGGGTCCAGTGATAC+TGG - chr4_4:62310814-62310833 Msa0693400:intron 55.0%
TACGAGGCTCACCAACGACT+TGG - chr4_4:62312360-62312379 Msa0693400:CDS 55.0%
! GGGGCTCTTTCTGGTGGTTC+TGG - chr4_4:62310785-62310804 Msa0693400:intron 60.0%
! ATTCACCTGCTGGTGGACGG+TGG - chr4_4:62311712-62311731 Msa0693400:intron 60.0%
AAAGACCACCGTCCACCAGC+AGG + chr4_4:62311720-62311739 None:intergenic 60.0%
! GTCGTTGGTGAGCCTCGTAC+CGG + chr4_4:62312359-62312378 None:intergenic 60.0%
TGGTGGGGAGTCCAAGTCGT+TGG + chr4_4:62312374-62312393 None:intergenic 60.0%
! GGGGCTCTTTCTGGTGGTTC+TGG - chr4_4:62310785-62310804 Msa0693400:intron 60.0%
! ATTCACCTGCTGGTGGACGG+TGG - chr4_4:62311712-62311731 Msa0693400:intron 60.0%
AAAGACCACCGTCCACCAGC+AGG + chr4_4:62311720-62311739 None:intergenic 60.0%
! GTCGTTGGTGAGCCTCGTAC+CGG + chr4_4:62312359-62312378 None:intergenic 60.0%
TGGTGGGGAGTCCAAGTCGT+TGG + chr4_4:62312374-62312393 None:intergenic 60.0%
CTCTGGCTGTCACCGGTACG+AGG - chr4_4:62312344-62312363 Msa0693400:CDS 65.0%
CTCTGGCTGTCACCGGTACG+AGG - chr4_4:62312344-62312363 Msa0693400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62310469 62312800 62310469 ID=Msa0693400;Name=Msa0693400
chr4_4 mRNA 62310469 62312800 62310469 ID=Msa0693400-mRNA-1;Parent=Msa0693400;Name=Msa0693400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=155|1|1|1|1|1|5|256|125
chr4_4 exon 62310469 62310740 62310469 ID=Msa0693400-mRNA-1:exon:17449;Parent=Msa0693400-mRNA-1
chr4_4 exon 62310836 62310929 62310836 ID=Msa0693400-mRNA-1:exon:17448;Parent=Msa0693400-mRNA-1
chr4_4 exon 62311117 62311150 62311117 ID=Msa0693400-mRNA-1:exon:17447;Parent=Msa0693400-mRNA-1
chr4_4 exon 62312323 62312483 62312323 ID=Msa0693400-mRNA-1:exon:17446;Parent=Msa0693400-mRNA-1
chr4_4 exon 62312573 62312800 62312573 ID=Msa0693400-mRNA-1:exon:17445;Parent=Msa0693400-mRNA-1
chr4_4 five_prime_UTR 62312646 62312800 62312646 ID=Msa0693400-mRNA-1:five_prime_utr;Parent=Msa0693400-mRNA-1
chr4_4 CDS 62312573 62312645 62312573 ID=Msa0693400-mRNA-1:cds;Parent=Msa0693400-mRNA-1
chr4_4 CDS 62312323 62312483 62312323 ID=Msa0693400-mRNA-1:cds;Parent=Msa0693400-mRNA-1
chr4_4 CDS 62311117 62311150 62311117 ID=Msa0693400-mRNA-1:cds;Parent=Msa0693400-mRNA-1
chr4_4 CDS 62310836 62310929 62310836 ID=Msa0693400-mRNA-1:cds;Parent=Msa0693400-mRNA-1
chr4_4 CDS 62310725 62310740 62310725 ID=Msa0693400-mRNA-1:cds;Parent=Msa0693400-mRNA-1
chr4_4 three_prime_UTR 62310469 62310724 62310469 ID=Msa0693400-mRNA-1:three_prime_utr;Parent=Msa0693400-mRNA-1
Gene Sequence

>Msa0693400

ATGGCAAATTTTGTTCTGCAGGTTCCAAATAGTTTGAGGAGTTTCACTGTGTCTGCTTCATCCAACCCTAATGGGGCTCTTTCTGGTGGTTCTGGAAGTGGTGGTGTGGGTCCAGTGATACTGGAACTTCCTCTTGATAAGATAAGAAGGCCTATGATGAGGACTAGATCAAATGATCAAAACAAAGTTCAAGAACTTATGGATAGTATTAGTGAAATTGGTCTTCAAGTGCCTATTGATGTGCTTGAGGTTGATGGAAACTATTATGGTTTCTCTGGCTGTCACCGGTACGAGGCTCACCAACGACTTGGACTCCCCACCATACGCTGCAAAATACGGCGTGGCACAAAAGAGACTCTAAGGCATCACATGCGCTAA

Protein sequence

>Msa0693400

MANFVLQVPNSLRSFTVSASSNPNGALSGGSGSGGVGPVILELPLDKIRRPMMRTRSNDQNKVQELMDSISEIGLQVPIDVLEVDGNYYGFSGCHRYEAHQRLGLPTIRCKIRRGTKETLRHHMR*