AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1249410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1249410 MtrunA17_Chr8g0348281 88.066 243 13 2 1 242 1 228 1.64e-158 438
Msa1249410 MtrunA17_Chr4g0019181 93.506 77 5 0 112 188 92 168 4.40e-49 159
Msa1249410 MtrunA17_Chr4g0019171 83.721 86 9 1 1 81 1 86 1.09e-44 145
Msa1249410 MtrunA17_Chr1g0190931 26.457 223 145 6 13 223 17 232 4.88e-19 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1249410 AT2G46100.1 65.728 213 57 3 28 228 27 235 3.18e-102 296
Msa1249410 AT2G46100.2 58.000 150 47 3 28 165 27 172 9.53e-52 168
Msa1249410 AT3G04890.1 34.965 143 87 3 94 232 76 216 3.35e-22 91.3
Msa1249410 AT3G04890.3 34.965 143 87 3 94 232 80 220 4.18e-22 91.3
Msa1249410 AT3G04890.2 32.283 127 74 2 94 208 76 202 3.13e-16 75.5
Msa1249410 AT3G04890.4 32.283 127 74 2 94 208 80 206 3.94e-16 75.1

Find 62 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGAGGCCTATTCTTTC+TGG 0.046570 8_2:+44073667 Msa1249410:CDS
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 8_2:+44071833 Msa1249410:exon
GTTGTTGTGACTCTTGATTT+TGG 0.256583 8_2:-44071983 None:intergenic
CACTAACTTTGGATCACTTC+TGG 0.287804 8_2:+44073223 Msa1249410:CDS
AAAGCTTGCTTAATTATTGA+TGG 0.297894 8_2:+44074488 Msa1249410:three_prime_UTR
TTGTGGTGATGTTGTTGTTT+TGG 0.314085 8_2:-44071915 None:intergenic
AGGAATATCCTGTATATATA+TGG 0.323875 8_2:+44074350 Msa1249410:three_prime_UTR
TGCATTGAATTTGAAACCTA+TGG 0.325155 8_2:-44071950 None:intergenic
TATGGTTTACCAGATTAATT+AGG 0.325566 8_2:+44074368 Msa1249410:three_prime_UTR
ATGTTACTAGATTCAATGTT+TGG 0.338533 8_2:+44071598 None:intergenic
GCTGTATCTTGTCCTTTCCT+TGG 0.347381 8_2:+44073650 Msa1249410:CDS
ACAGAACAATGTATTTCTTA+AGG 0.354819 8_2:+44072004 Msa1249410:CDS
CTGTGACAAAATAAGATCTT+TGG 0.367519 8_2:-44072169 None:intergenic
CTTTGTTCAAGCAAATTCTA+AGG 0.368956 8_2:+44074147 Msa1249410:CDS
TGGTATAGTTCTGAGCTTCT+AGG 0.369490 8_2:+44072032 Msa1249410:CDS
AAAAGGAACTGCACTAACTT+TGG 0.371780 8_2:+44073212 Msa1249410:CDS
CACATGTAAGTCTGTGGTAT+TGG 0.388973 8_2:+44074282 Msa1249410:three_prime_UTR
GTATCTTGTCCTTTCCTTGG+AGG 0.412030 8_2:+44073653 Msa1249410:CDS
CCATGACAGGATAAAGGAAT+TGG 0.428536 8_2:+44073613 Msa1249410:intron
TTTGCTCCATGACAGGATAA+AGG 0.440137 8_2:+44073607 Msa1249410:intron
GTTAGAATCTAAGAACAAAC+AGG 0.441894 8_2:-44071793 None:intergenic
ATTCACAGACCTAATTAATC+TGG 0.444076 8_2:-44074377 None:intergenic
CTGGTAAACCATATATATAC+AGG 0.446381 8_2:-44074358 None:intergenic
CTTTCAGGCATGTGGAGCAT+TGG 0.446746 8_2:+44074108 Msa1249410:intron
GTACTAATTATAGAAGTCTA+TGG 0.447623 8_2:+44074308 Msa1249410:three_prime_UTR
TGAGATTTACCAGAAAGAAT+AGG 0.456237 8_2:-44073676 None:intergenic
GTGGTGATGGTTGTGACTAA+TGG 0.469661 8_2:-44071874 None:intergenic
TGAAGAGGATTGTGAATTTG+CGG 0.489339 8_2:+44073154 Msa1249410:CDS
AAGGACTTCAGCGTTTCAAA+AGG 0.491123 8_2:+44073195 Msa1249410:CDS
TTTAAGCTAAATCCCTTGCT+AGG 0.497530 8_2:-44074170 None:intergenic
ATTAATTAGGTCTGTGAATG+TGG 0.499247 8_2:+44074381 Msa1249410:three_prime_UTR
AGGTTTCAAATTCAATGCAA+TGG 0.509267 8_2:+44071954 Msa1249410:CDS
AACTTAGATATTTAAATACA+AGG 0.509684 8_2:+44071761 Msa1249410:five_prime_UTR
GTAGAAGCTTATGCTGTACT+AGG 0.509835 8_2:+44074330 Msa1249410:three_prime_UTR
ATGTATTTCTTAAGGTTGCA+TGG 0.514798 8_2:+44072012 Msa1249410:CDS
CTAGGTTGCTGAAGTTGTCC+AGG 0.518768 8_2:+44074204 Msa1249410:CDS
TAGATATTTAAATACAAGGC+AGG 0.521780 8_2:+44071765 Msa1249410:five_prime_UTR
GAAGCTTCTTCTTCATCAGA+TGG 0.522340 8_2:-44072080 None:intergenic
CACAACAGAAGCACGATCAA+TGG 0.522503 8_2:-44072126 None:intergenic
CACAATCAGGAAAAGTATGC+AGG 0.531502 8_2:+44074006 Msa1249410:CDS
CAACTATGAATCTTATGAAG+TGG 0.531678 8_2:+44073252 Msa1249410:CDS
CCTGAAAACTTTCAGGCATG+TGG 0.535655 8_2:+44074100 Msa1249410:intron
CATTGATCGTGCTTCTGTTG+TGG 0.537026 8_2:+44072127 Msa1249410:CDS
TGTGAATTTGCGGATCCAGC+GGG 0.538988 8_2:+44073164 Msa1249410:CDS
CACATTGAATGCATATGAAG+AGG 0.540073 8_2:+44073139 Msa1249410:CDS
AACTATGAATCTTATGAAGT+GGG 0.541276 8_2:+44073253 Msa1249410:CDS
CCAGAAAGAATAGGCCTCCA+AGG 0.545523 8_2:-44073667 None:intergenic
AGGATAAAGGAATTGGTCAC+TGG 0.548719 8_2:+44073620 Msa1249410:intron
GCAAATTCTAAGGCCTAGCA+AGG 0.551037 8_2:+44074157 Msa1249410:CDS
CTTCTTCATCAGATGGAGAA+CGG 0.564350 8_2:-44072073 None:intergenic
GCTTAAAAGATTATGTGACT+AGG 0.578708 8_2:+44074186 Msa1249410:CDS
TTAAAATAACAGCTCTAGTG+TGG 0.582268 8_2:-44071699 None:intergenic
AAGAATAGGCCTCCAAGGAA+AGG 0.586585 8_2:-44073662 None:intergenic
ATATAATTTACATATTCACC+TGG 0.587689 8_2:-44074222 None:intergenic
AGAACAAAGAAGTGTGGTGA+TGG 0.594904 8_2:-44071887 None:intergenic
ATTATACACATGTAAGTCTG+TGG 0.609997 8_2:+44074276 Msa1249410:three_prime_UTR
AGTCCTTTAAAAGATCCCGC+TGG 0.610274 8_2:-44073179 None:intergenic
TTGTGAATTTGCGGATCCAG+CGG 0.612444 8_2:+44073163 Msa1249410:CDS
GTTTGAAGAAGTCTCTGAGG+AGG 0.641425 8_2:-44072104 None:intergenic
CAAATTCTAAGGCCTAGCAA+GGG 0.670959 8_2:+44074158 Msa1249410:CDS
ATGGTTTGAAGAAGTCTCTG+AGG 0.694702 8_2:-44072107 None:intergenic
GTGCAAAGAACAAAGAAGTG+TGG 0.724805 8_2:-44071893 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTACTTCATTTTTTTTT+TGG + chr8_2:44071639-44071658 Msa1249410:five_prime_UTR 15.0%
!! AACTTAGATATTTAAATACA+AGG + chr8_2:44071761-44071780 Msa1249410:five_prime_UTR 15.0%
!!! TAAAATTTGTTAGTTTAATC+AGG - chr8_2:44072583-44072602 None:intergenic 15.0%
!!! ATTTCTATTTTAAGCACTTA+CGG - chr8_2:44072735-44072754 None:intergenic 20.0%
!! TGCTTAAAATAGAAATACAA+AGG + chr8_2:44072739-44072758 Msa1249410:intron 20.0%
!!! TACTACTCAATAATGTTTTA+GGG + chr8_2:44072907-44072926 Msa1249410:intron 20.0%
!!! TTTTGTATCAGTCATTATAT+AGG - chr8_2:44073024-44073043 None:intergenic 20.0%
!!! GTATTTTGATTATAATCAGA+TGG + chr8_2:44073075-44073094 Msa1249410:intron 20.0%
!! GATTAAACTCTATTAAGTTA+AGG - chr8_2:44073478-44073497 None:intergenic 20.0%
!! TATAAAAAACACAAGTTTCT+AGG - chr8_2:44073516-44073535 None:intergenic 20.0%
!! AATTTCATTATGTTCATCAA+TGG - chr8_2:44073732-44073751 None:intergenic 20.0%
!! ATGTTCAAATTAACATGAAT+CGG + chr8_2:44073844-44073863 Msa1249410:intron 20.0%
!!! TATTATTTTGATACACAATC+AGG + chr8_2:44073993-44074012 Msa1249410:CDS 20.0%
!! ATATAATTTACATATTCACC+TGG - chr8_2:44074225-44074244 None:intergenic 20.0%
!!! CTTCATTTTTTTTTTGGACA+TGG + chr8_2:44071645-44071664 Msa1249410:five_prime_UTR 25.0%
!!! TTTTTTTTTGGACATGGATT+TGG + chr8_2:44071651-44071670 Msa1249410:five_prime_UTR 25.0%
! TAGATATTTAAATACAAGGC+AGG + chr8_2:44071765-44071784 Msa1249410:five_prime_UTR 25.0%
!!! TATGGATTTTTGTGTTATTG+TGG - chr8_2:44071935-44071954 None:intergenic 25.0%
! ACAATAACACAAAAATCCAT+AGG + chr8_2:44071934-44071953 Msa1249410:CDS 25.0%
! ACAGAACAATGTATTTCTTA+AGG + chr8_2:44072004-44072023 Msa1249410:CDS 25.0%
!! TTTCATTTGATTTCTGTGTT+TGG + chr8_2:44072247-44072266 Msa1249410:intron 25.0%
!! TTCATTTGATTTCTGTGTTT+GGG + chr8_2:44072248-44072267 Msa1249410:intron 25.0%
! CATACTTAAAATTGAAGCTA+TGG - chr8_2:44072284-44072303 None:intergenic 25.0%
!!! CATAGCTTCAATTTTAAGTA+TGG + chr8_2:44072282-44072301 Msa1249410:intron 25.0%
!!! TGTCTTTTTTACACATCATT+TGG + chr8_2:44072318-44072337 Msa1249410:intron 25.0%
!! GAGAAAAAGTTGATTACAAT+CGG + chr8_2:44072534-44072553 Msa1249410:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG + chr8_2:44072906-44072925 Msa1249410:intron 25.0%
! CAAAATGAAGCTAATACAAT+TGG + chr8_2:44073039-44073058 Msa1249410:intron 25.0%
! AACTATGAATCTTATGAAGT+GGG + chr8_2:44073253-44073272 Msa1249410:CDS 25.0%
!! AATATAGAGTTTTGCAACTT+AGG + chr8_2:44073325-44073344 Msa1249410:intron 25.0%
! ATGTAATATCAAGAGTTACA+AGG - chr8_2:44073385-44073404 None:intergenic 25.0%
! CTCAATCTATTAGATATACA+TGG - chr8_2:44073709-44073728 None:intergenic 25.0%
! TGTTCAAATTAACATGAATC+GGG + chr8_2:44073845-44073864 Msa1249410:intron 25.0%
! GTACTAATTATAGAAGTCTA+TGG + chr8_2:44074308-44074327 Msa1249410:three_prime_UTR 25.0%
! AGGAATATCCTGTATATATA+TGG + chr8_2:44074350-44074369 Msa1249410:three_prime_UTR 25.0%
! TATGGTTTACCAGATTAATT+AGG + chr8_2:44074368-44074387 Msa1249410:three_prime_UTR 25.0%
!!! CTTTTCTCTGTTATTTTTTC+TGG - chr8_2:44074415-44074434 None:intergenic 25.0%
! CAGAAAAAATAACAGAGAAA+AGG + chr8_2:44074413-44074432 Msa1249410:three_prime_UTR 25.0%
!! AAAGCTTGCTTAATTATTGA+TGG + chr8_2:44074488-44074507 Msa1249410:three_prime_UTR 25.0%
! TTAAAATAACAGCTCTAGTG+TGG - chr8_2:44071702-44071721 None:intergenic 30.0%
! CCACATAAAAATGGTGATTT+TGG - chr8_2:44071726-44071745 None:intergenic 30.0%
!! CCAAAATCACCATTTTTATG+TGG + chr8_2:44071723-44071742 Msa1249410:five_prime_UTR 30.0%
TAATGCTAGCCACATAAAAA+TGG - chr8_2:44071735-44071754 None:intergenic 30.0%
GTTAGAATCTAAGAACAAAC+AGG - chr8_2:44071796-44071815 None:intergenic 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG + chr8_2:44071833-44071852 Msa1249410:exon 30.0%
! TGCATTGAATTTGAAACCTA+TGG - chr8_2:44071953-44071972 None:intergenic 30.0%
AGGTTTCAAATTCAATGCAA+TGG + chr8_2:44071954-44071973 Msa1249410:CDS 30.0%
ATGTATTTCTTAAGGTTGCA+TGG + chr8_2:44072012-44072031 Msa1249410:CDS 30.0%
CTGTGACAAAATAAGATCTT+TGG - chr8_2:44072172-44072191 None:intergenic 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG + chr8_2:44072170-44072189 Msa1249410:CDS 30.0%
!!! ATGCTTTTTCTTATGAAACG+TGG + chr8_2:44072209-44072228 Msa1249410:intron 30.0%
!! TCATTTGGATGATTGATTTG+TGG + chr8_2:44072333-44072352 Msa1249410:intron 30.0%
ATTCCTAGTTACTGATAAGT+GGG + chr8_2:44072390-44072409 Msa1249410:intron 30.0%
AACGTTTATTGGGTTATGAT+TGG + chr8_2:44072430-44072449 Msa1249410:intron 30.0%
ACGTTTATTGGGTTATGATT+GGG + chr8_2:44072431-44072450 Msa1249410:intron 30.0%
!! GTATCTTTTACTTTTGAACC+AGG + chr8_2:44072851-44072870 Msa1249410:intron 30.0%
!!! CTCAATAATGTTTTAGGGAT+TGG + chr8_2:44072912-44072931 Msa1249410:intron 30.0%
TTATAATCAGATGGTTCACA+TGG + chr8_2:44073084-44073103 Msa1249410:intron 30.0%
CAACTATGAATCTTATGAAG+TGG + chr8_2:44073252-44073271 Msa1249410:CDS 30.0%
TTACATGCAACTGATGATAA+AGG + chr8_2:44073399-44073418 Msa1249410:intron 30.0%
! TCAATCTTTTTATCGAGTGT+TGG + chr8_2:44073547-44073566 Msa1249410:intron 30.0%
TGAGATTTACCAGAAAGAAT+AGG - chr8_2:44073679-44073698 None:intergenic 30.0%
TGTATTTATCTGCATTTGAC+TGG + chr8_2:44073778-44073797 Msa1249410:intron 30.0%
ACGAAAAATAAATCCAAGAG+AGG - chr8_2:44073806-44073825 None:intergenic 30.0%
! CGGGTTTTTAATAGAATATG+TGG + chr8_2:44073864-44073883 Msa1249410:intron 30.0%
TGCTGCAACATATATTAACA+TGG - chr8_2:44073958-44073977 None:intergenic 30.0%
TTAATATATGTTGCAGCAAC+TGG + chr8_2:44073960-44073979 Msa1249410:intron 30.0%
CTAAATTCCTGAAAACTTTC+AGG + chr8_2:44074093-44074112 Msa1249410:intron 30.0%
CTTTGTTCAAGCAAATTCTA+AGG + chr8_2:44074147-44074166 Msa1249410:CDS 30.0%
GCTTAAAAGATTATGTGACT+AGG + chr8_2:44074186-44074205 Msa1249410:CDS 30.0%
ATTATACACATGTAAGTCTG+TGG + chr8_2:44074276-44074295 Msa1249410:three_prime_UTR 30.0%
CTGGTAAACCATATATATAC+AGG - chr8_2:44074361-44074380 None:intergenic 30.0%
ATTCACAGACCTAATTAATC+TGG - chr8_2:44074380-44074399 None:intergenic 30.0%
ATTAATTAGGTCTGTGAATG+TGG + chr8_2:44074381-44074400 Msa1249410:three_prime_UTR 30.0%
!!! TTGTGGTGATGTTGTTGTTT+TGG - chr8_2:44071918-44071937 None:intergenic 35.0%
! GTTGTTGTGACTCTTGATTT+TGG - chr8_2:44071986-44072005 None:intergenic 35.0%
!! GATGATTGATTTGTGGAGAA+AGG + chr8_2:44072340-44072359 Msa1249410:intron 35.0%
CATGACTATTCAGAGTTGTT+AGG + chr8_2:44072363-44072382 Msa1249410:intron 35.0%
GATTCCTAGTTACTGATAAG+TGG + chr8_2:44072389-44072408 Msa1249410:intron 35.0%
CGTTTATTGGGTTATGATTG+GGG + chr8_2:44072432-44072451 Msa1249410:intron 35.0%
GTTTATTGGGTTATGATTGG+GGG + chr8_2:44072433-44072452 Msa1249410:intron 35.0%
TTTATTGGGTTATGATTGGG+GGG + chr8_2:44072434-44072453 Msa1249410:intron 35.0%
TCAGGAGCAATGTTGTAATA+TGG + chr8_2:44072670-44072689 Msa1249410:intron 35.0%
GTAATGCTGAGAACAAAAAG+AGG + chr8_2:44072934-44072953 Msa1249410:intron 35.0%
CACATTGAATGCATATGAAG+AGG + chr8_2:44073139-44073158 Msa1249410:CDS 35.0%
TGAAGAGGATTGTGAATTTG+CGG + chr8_2:44073154-44073173 Msa1249410:CDS 35.0%
AAAAGGAACTGCACTAACTT+TGG + chr8_2:44073212-44073231 Msa1249410:CDS 35.0%
! TATGAAGTGGGAAGATTTTG+AGG + chr8_2:44073265-44073284 Msa1249410:CDS 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG - chr8_2:44073300-44073319 None:intergenic 35.0%
GATGATAAAGGTTTCTGATG+CGG + chr8_2:44073411-44073430 Msa1249410:intron 35.0%
CTATTAAGTTAAGGCTGCTT+AGG - chr8_2:44073469-44073488 None:intergenic 35.0%
!! GTTTCTAGGATATGTTTAGC+AGG - chr8_2:44073502-44073521 None:intergenic 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG - chr8_2:44074140-44074159 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+AGG - chr8_2:44074173-44074192 None:intergenic 35.0%
! AGAACAAAGAAGTGTGGTGA+TGG - chr8_2:44071890-44071909 None:intergenic 40.0%
GTGCAAAGAACAAAGAAGTG+TGG - chr8_2:44071896-44071915 None:intergenic 40.0%
!! TGGTATAGTTCTGAGCTTCT+AGG + chr8_2:44072032-44072051 Msa1249410:CDS 40.0%
CTTCTTCATCAGATGGAGAA+CGG - chr8_2:44072076-44072095 None:intergenic 40.0%
GAAGCTTCTTCTTCATCAGA+TGG - chr8_2:44072083-44072102 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+AGG - chr8_2:44072110-44072129 None:intergenic 40.0%
CTACCCACTTATCAGTAACT+AGG - chr8_2:44072396-44072415 None:intergenic 40.0%
CTAGTTACTGATAAGTGGGT+AGG + chr8_2:44072394-44072413 Msa1249410:intron 40.0%
TTACTGATAAGTGGGTAGGT+CGG + chr8_2:44072398-44072417 Msa1249410:intron 40.0%
GTTAGAATAGAACAGCAACC+TGG - chr8_2:44072872-44072891 None:intergenic 40.0%
AAGGACTTCAGCGTTTCAAA+AGG + chr8_2:44073195-44073214 Msa1249410:CDS 40.0%
CACTAACTTTGGATCACTTC+TGG + chr8_2:44073223-44073242 Msa1249410:CDS 40.0%
TCATACATTTGCTCCATGAC+AGG + chr8_2:44073600-44073619 Msa1249410:intron 40.0%
TTTGCTCCATGACAGGATAA+AGG + chr8_2:44073607-44073626 Msa1249410:intron 40.0%
CCAATTCCTTTATCCTGTCA+TGG - chr8_2:44073616-44073635 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG + chr8_2:44073613-44073632 Msa1249410:intron 40.0%
AGGATAAAGGAATTGGTCAC+TGG + chr8_2:44073620-44073639 Msa1249410:intron 40.0%
! CACAATCAGGAAAAGTATGC+AGG + chr8_2:44074006-44074025 Msa1249410:CDS 40.0%
GCATTGGAATGTGCCAAAAA+TGG + chr8_2:44074124-44074143 Msa1249410:CDS 40.0%
!! CAAATTCTAAGGCCTAGCAA+GGG + chr8_2:44074158-44074177 Msa1249410:CDS 40.0%
CACATGTAAGTCTGTGGTAT+TGG + chr8_2:44074282-44074301 Msa1249410:three_prime_UTR 40.0%
GTAGAAGCTTATGCTGTACT+AGG + chr8_2:44074330-44074349 Msa1249410:three_prime_UTR 40.0%
!! GTGGTGATGGTTGTGACTAA+TGG - chr8_2:44071877-44071896 None:intergenic 45.0%
! GTTTGAAGAAGTCTCTGAGG+AGG - chr8_2:44072107-44072126 None:intergenic 45.0%
! CACAACAGAAGCACGATCAA+TGG - chr8_2:44072129-44072148 None:intergenic 45.0%
CATTGATCGTGCTTCTGTTG+TGG + chr8_2:44072127-44072146 Msa1249410:CDS 45.0%
GCCAGGCTCAAACGTTTATT+GGG + chr8_2:44072420-44072439 Msa1249410:intron 45.0%
ACCCAATAAACGTTTGAGCC+TGG - chr8_2:44072424-44072443 None:intergenic 45.0%
AACACTTTGCTCCAACAGTG+TGG + chr8_2:44072646-44072665 Msa1249410:intron 45.0%
ATCTATTCCTCCCAACTCTC+AGG + chr8_2:44073110-44073129 Msa1249410:intron 45.0%
TGTGAGATCTCCTGAGAGTT+GGG - chr8_2:44073123-44073142 None:intergenic 45.0%
ATGTGAGATCTCCTGAGAGT+TGG - chr8_2:44073124-44073143 None:intergenic 45.0%
TTGTGAATTTGCGGATCCAG+CGG + chr8_2:44073163-44073182 Msa1249410:CDS 45.0%
! GATCCAGCGGGATCTTTTAA+AGG + chr8_2:44073176-44073195 Msa1249410:CDS 45.0%
! AGTCCTTTAAAAGATCCCGC+TGG - chr8_2:44073182-44073201 None:intergenic 45.0%
GCTGTATCTTGTCCTTTCCT+TGG + chr8_2:44073650-44073669 Msa1249410:CDS 45.0%
GTATCTTGTCCTTTCCTTGG+AGG + chr8_2:44073653-44073672 Msa1249410:CDS 45.0%
AAGAATAGGCCTCCAAGGAA+AGG - chr8_2:44073665-44073684 None:intergenic 45.0%
CATTTGACTGGAACCTCTCT+TGG + chr8_2:44073790-44073809 Msa1249410:intron 45.0%
! CCACATGCCTGAAAGTTTTC+AGG - chr8_2:44074103-44074122 None:intergenic 45.0%
CCTGAAAACTTTCAGGCATG+TGG + chr8_2:44074100-44074119 Msa1249410:intron 45.0%
!! GCAAATTCTAAGGCCTAGCA+AGG + chr8_2:44074157-44074176 Msa1249410:CDS 45.0%
GGCCAGGCTCAAACGTTTAT+TGG + chr8_2:44072419-44072438 Msa1249410:intron 50.0%
TTGCTCCAACAGTGTGGTTC+AGG + chr8_2:44072652-44072671 Msa1249410:intron 50.0%
TTGCTCCTGAACCACACTGT+TGG - chr8_2:44072660-44072679 None:intergenic 50.0%
TGTGAATTTGCGGATCCAGC+GGG + chr8_2:44073164-44073183 Msa1249410:CDS 50.0%
CCAGAAAGAATAGGCCTCCA+AGG - chr8_2:44073670-44073689 None:intergenic 50.0%
CCTTGGAGGCCTATTCTTTC+TGG + chr8_2:44073667-44073686 Msa1249410:CDS 50.0%
CTTTCAGGCATGTGGAGCAT+TGG + chr8_2:44074108-44074127 Msa1249410:intron 50.0%
CTAGGTTGCTGAAGTTGTCC+AGG + chr8_2:44074204-44074223 Msa1249410:CDS 50.0%
ACTGCATCCCGCTTTGCAGT+CGG + chr8_2:44072763-44072782 Msa1249410:intron 55.0%
TACGTCTCCGACTGCAAAGC+GGG - chr8_2:44072773-44072792 None:intergenic 55.0%
CTACGTCTCCGACTGCAAAG+CGG - chr8_2:44072774-44072793 None:intergenic 55.0%
GAGATCTCCTGAGAGTTGGG+AGG - chr8_2:44073120-44073139 None:intergenic 55.0%
GATAAGTGGGTAGGTCGGCC+AGG + chr8_2:44072403-44072422 Msa1249410:intron 60.0%
CGCTTTGCAGTCGGAGACGT+AGG + chr8_2:44072772-44072791 Msa1249410:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 44071602 44074530 44071602 ID=Msa1249410;Name=Msa1249410
chr8_2 mRNA 44071602 44074530 44071602 ID=Msa1249410-mRNA-1;Parent=Msa1249410;Name=Msa1249410-mRNA-1;_AED=0.20;_eAED=0.20;_QI=250|1|1|1|1|1|5|301|242
chr8_2 exon 44071602 44072191 44071602 ID=Msa1249410-mRNA-1:exon:13381;Parent=Msa1249410-mRNA-1
chr8_2 exon 44073132 44073286 44073132 ID=Msa1249410-mRNA-1:exon:13382;Parent=Msa1249410-mRNA-1
chr8_2 exon 44073622 44073688 44073622 ID=Msa1249410-mRNA-1:exon:13383;Parent=Msa1249410-mRNA-1
chr8_2 exon 44073976 44074027 44073976 ID=Msa1249410-mRNA-1:exon:13384;Parent=Msa1249410-mRNA-1
chr8_2 exon 44074115 44074530 44074115 ID=Msa1249410-mRNA-1:exon:13385;Parent=Msa1249410-mRNA-1
chr8_2 five_prime_UTR 44071602 44071851 44071602 ID=Msa1249410-mRNA-1:five_prime_utr;Parent=Msa1249410-mRNA-1
chr8_2 CDS 44071852 44072191 44071852 ID=Msa1249410-mRNA-1:cds;Parent=Msa1249410-mRNA-1
chr8_2 CDS 44073132 44073286 44073132 ID=Msa1249410-mRNA-1:cds;Parent=Msa1249410-mRNA-1
chr8_2 CDS 44073622 44073688 44073622 ID=Msa1249410-mRNA-1:cds;Parent=Msa1249410-mRNA-1
chr8_2 CDS 44073976 44074027 44073976 ID=Msa1249410-mRNA-1:cds;Parent=Msa1249410-mRNA-1
chr8_2 CDS 44074115 44074229 44074115 ID=Msa1249410-mRNA-1:cds;Parent=Msa1249410-mRNA-1
chr8_2 three_prime_UTR 44074230 44074530 44074230 ID=Msa1249410-mRNA-1:three_prime_utr;Parent=Msa1249410-mRNA-1
Gene Sequence

>Msa1249410

ATGGCATTGTCTGCTATATCTTCCATTAGTCACAACCATCACCACACTTCTTTGTTCTTTGCACCAAAACAACAACATCACCACAATAACACAAAAATCCATAGGTTTCAAATTCAATGCAATGGAACAAACCAAAATCAAGAGTCACAACAACAGAACAATGTATTTCTTAAGGTTGCATGGTATAGTTCTGAGCTTCTAGGCATTGCTGCTTCTACTTTCCGTTCTCCATCTGATGAAGAAGAAGCTTCTCCTCCTCAGAGACTTCTTCAAACCATTGATCGTGCTTCTGTTGTGGACACAATCAAACAAGATTTCCAAAGATCTTATTTTGTCACAGGAGATCTCACATTGAATGCATATGAAGAGGATTGTGAATTTGCGGATCCAGCGGGATCTTTTAAAGGACTTCAGCGTTTCAAAAGGAACTGCACTAACTTTGGATCACTTCTGGAGAAGTCAACTATGAATCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGGCCTATTCTTTCTGCAACTGGATACACAGAATATTATTTTGATACACAATCAGGAAAAGTATGCAGGCATGTGGAGCATTGGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAGCAAGGGATTTAGCTTAAAAGATTATGTGACTAGGTTGCTGAAGTTGTCCAGGTGA

Protein sequence

>Msa1249410

MALSAISSISHNHHHTSLFFAPKQQHHHNNTKIHRFQIQCNGTNQNQESQQQNNVFLKVAWYSSELLGIAASTFRSPSDEEEASPPQRLLQTIDRASVVDTIKQDFQRSYFVTGDLTLNAYEEDCEFADPAGSFKGLQRFKRNCTNFGSLLEKSTMNLMKWEDFEDKGIGHWRFSCILSFPWRPILSATGYTEYYFDTQSGKVCRHVEHWNVPKMALFKQILRPSKGFSLKDYVTRLLKLSR*