AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0793100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793100 MtrunA17_Chr1g0213301 92.737 179 5 3 1 179 1 171 4.30e-116 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793100 AT2G34860.2 58.382 173 64 3 15 179 14 186 3.66e-63 193
Msa0793100 AT2G34860.1 58.382 173 64 3 15 179 14 186 3.66e-63 193

Find 70 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTGCTAATGCTGATTTC+TGG 0.190781 5_3:+5104762 Msa0793100:three_prime_UTR
CATCTTATCAAGCAGTTTCT+TGG 0.222839 5_3:-5104422 None:intergenic
CGCCTGGAAACAACATTTAC+TGG 0.235547 5_3:-5103999 None:intergenic
ACATACCTTCTTCTAAGAAT+TGG 0.272269 5_3:-5104464 None:intergenic
CCAAGCAAAATTTAGAGTTC+TGG 0.281948 5_3:-5104913 None:intergenic
CTTGTCTGCCCTGTTTGTTT+AGG 0.322236 5_3:+5104355 Msa0793100:CDS
ACTGAATGTCCTAATTGTTA+TGG 0.323214 5_3:+5104322 Msa0793100:CDS
CGGAATGGATTGCAATTTGC+AGG 0.323737 5_3:+5103748 Msa0793100:exon
CAGTCACTGGCTTAATTAAC+TGG 0.333554 5_3:-5104805 None:intergenic
CTGAGAAGACCTTTATTGTT+TGG 0.336791 5_3:-5104388 None:intergenic
TTTCCTCGACCATAACAATT+AGG 0.345884 5_3:-5104331 None:intergenic
TGCCCTGTTTGTTTAGGAAC+TGG 0.352275 5_3:+5104361 Msa0793100:CDS
GGTTACTAGTTAGCACCTAT+TGG 0.353176 5_3:+5104934 Msa0793100:three_prime_UTR
CTGCTTGATAAGATGTATAA+TGG 0.353896 5_3:+5104430 Msa0793100:CDS
GAAAATGGAAAGCTCTTAAC+AGG 0.369385 5_3:+5104272 Msa0793100:CDS
CATACCTTCTTCTAAGAATT+GGG 0.381922 5_3:-5104463 None:intergenic
TCCCAGTAAATGTTGTTTCC+AGG 0.390370 5_3:+5103997 Msa0793100:CDS
TGTGTGGTGGTACAGGAAAA+TGG 0.392406 5_3:+5104257 Msa0793100:CDS
TCAAGCAGTTTCTTGGCGTC+AGG 0.394589 5_3:-5104415 None:intergenic
ACTGGTGTGCCAAACAATAA+AGG 0.405844 5_3:+5104379 Msa0793100:CDS
ACACCAGTTCCTAAACAAAC+AGG 0.409014 5_3:-5104364 None:intergenic
TACTTGGTAACTATCTATAT+AGG 0.419252 5_3:-5105091 None:intergenic
ATCACTCTCTTCTTCTCCAT+CGG 0.420712 5_3:+5103728 Msa0793100:five_prime_UTR
ACAAAATATTGAAATCCAAT+AGG 0.425468 5_3:-5104949 None:intergenic
TAAATGACTTTCAAAATGTC+AGG 0.443125 5_3:+5105028 Msa0793100:three_prime_UTR
ATCCGCTTGACACATCTTTG+AGG 0.450787 5_3:-5105160 None:intergenic
CGTGGAGAGCACACGACCTA+TGG 0.452594 5_3:+5103659 None:intergenic
CCAGTGACTGCAATGGTAAT+CGG 0.455462 5_3:+5104818 Msa0793100:three_prime_UTR
CCGATTACCATTGCAGTCAC+TGG 0.455630 5_3:-5104818 None:intergenic
TGAACATATACATATTTACT+TGG 0.456697 5_3:-5105107 None:intergenic
ACTTCCCAATTCTTAGAAGA+AGG 0.466180 5_3:+5104459 Msa0793100:exon
AGTTGGAAGAGGAGGAAGAG+TGG 0.470888 5_3:-5103874 None:intergenic
ACCGCTCTTGATAAACCTCC+AGG 0.498198 5_3:+5104083 Msa0793100:CDS
CCACCACAATTTCTGCAACC+TGG 0.498937 5_3:-5104101 None:intergenic
CTAGCAAGTATTGCTATGTA+AGG 0.500666 5_3:+5105067 Msa0793100:three_prime_UTR
GTTTGTTTGATAAAAGAAGT+TGG 0.500841 5_3:-5103797 None:intergenic
TCCACTCTTCCTCAAAATCA+AGG 0.504399 5_3:+5103848 Msa0793100:CDS
TTGTGAGCACAACTGAATTG+AGG 0.504650 5_3:+5104741 Msa0793100:three_prime_UTR
CAAACAATAAAGGTCTTCTC+AGG 0.512552 5_3:+5104389 Msa0793100:CDS
GGTGATATGTGTGGTGGTAC+AGG 0.517437 5_3:+5104250 Msa0793100:intron
CTGTGTATTCTAAGCTAGCT+AGG 0.523119 5_3:-5104843 None:intergenic
TGCAGAAATTGTGGTGGAAG+TGG 0.524731 5_3:+5104107 Msa0793100:CDS
TCTTCTAAGAATTGGGAAGT+AGG 0.526104 5_3:-5104456 None:intergenic
TCTCTTCTTCTCCATCGGAA+TGG 0.530978 5_3:+5103733 Msa0793100:exon
ACATACCTTGGAGTTGGAAG+AGG 0.537745 5_3:-5103885 None:intergenic
TGATAAAAGAAGTTGGAGGA+AGG 0.545348 5_3:-5103790 None:intergenic
GCCTGGAAACAACATTTACT+GGG 0.549950 5_3:-5103998 None:intergenic
TGTCCTAATTGTTATGGTCG+AGG 0.554383 5_3:+5104328 Msa0793100:CDS
CCTCCAGGTTGCAGAAATTG+TGG 0.558014 5_3:+5104098 Msa0793100:CDS
ATACATACATACCTTGGAGT+TGG 0.560487 5_3:-5103891 None:intergenic
AGAGCACACGACCTATGGAT+TGG 0.561400 5_3:+5103664 Msa0793100:five_prime_UTR
TATATATATATTTGGTCTGG+AGG 0.570551 5_3:+5104886 Msa0793100:three_prime_UTR
ACATTTAAGACATTGACGCC+TGG 0.572047 5_3:-5104015 None:intergenic
TTAACTGGTGGAGAAAATTG+TGG 0.575727 5_3:-5104790 None:intergenic
TACCTTGGAGTTGGAAGAGG+AGG 0.582188 5_3:-5103882 None:intergenic
AAATATCAACTCCAATCCAT+AGG 0.583319 5_3:-5103675 None:intergenic
TTCCTCCTCTTCCAACTCCA+AGG 0.584619 5_3:+5103880 Msa0793100:CDS
CAAATTGCAATCCATTCCGA+TGG 0.595484 5_3:-5103744 None:intergenic
ACCTGGAGGTTTATCAAGAG+CGG 0.598366 5_3:-5104084 None:intergenic
ATCCTCAAAGATGTGTCAAG+CGG 0.606936 5_3:+5105158 Msa0793100:three_prime_UTR
CATTTAGGTGATATGTGTGG+TGG 0.616105 5_3:+5104244 Msa0793100:intron
AATTAAGCCAGTGACTGCAA+TGG 0.621433 5_3:+5104811 Msa0793100:three_prime_UTR
ACAATAAAGGTCTTCTCAGG+AGG 0.622506 5_3:+5104392 Msa0793100:CDS
TCACTGGCTTAATTAACTGG+TGG 0.630791 5_3:-5104802 None:intergenic
CCACAATTTCTGCAACCTGG+AGG 0.630868 5_3:-5104098 None:intergenic
CCAGGTTGCAGAAATTGTGG+TGG 0.631837 5_3:+5104101 Msa0793100:CDS
TTTCATTTAGGTGATATGTG+TGG 0.652582 5_3:+5104241 Msa0793100:intron
CACCAGTTCCTAAACAAACA+GGG 0.654127 5_3:-5104363 None:intergenic
TGTTTGATAAAAGAAGTTGG+AGG 0.669703 5_3:-5103794 None:intergenic
GAAGTTGGAGGAAGGCATCG+AGG 0.706960 5_3:-5103782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTGCATTAATTAAAAA+TGG - chr5_3:5104053-5104072 None:intergenic 15.0%
!! TAAGCTAAATAAAATATTGT+TGG + chr5_3:5104569-5104588 Msa0793100:intron 15.0%
!! AAGCTAAATAAAATATTGTT+GGG + chr5_3:5104570-5104589 Msa0793100:intron 15.0%
!! ATATATATATATATTTGGTC+TGG + chr5_3:5104883-5104902 Msa0793100:three_prime_UTR 15.0%
!! TTTGTTGCATTAATTAAAAA+TGG - chr5_3:5104053-5104072 None:intergenic 15.0%
!! TAAGCTAAATAAAATATTGT+TGG + chr5_3:5104569-5104588 Msa0793100:intron 15.0%
!! AAGCTAAATAAAATATTGTT+GGG + chr5_3:5104570-5104589 Msa0793100:intron 15.0%
!! ATATATATATATATTTGGTC+TGG + chr5_3:5104883-5104902 Msa0793100:three_prime_UTR 15.0%
!!! TACTACTTTTGATTTCATTT+AGG + chr5_3:5104229-5104248 Msa0793100:intron 20.0%
!! TAAATAAAATATTGTTGGGT+TGG + chr5_3:5104574-5104593 Msa0793100:intron 20.0%
!! AAATAAAATATTGTTGGGTT+GGG + chr5_3:5104575-5104594 Msa0793100:intron 20.0%
!! ACAAAATATTGAAATCCAAT+AGG - chr5_3:5104952-5104971 None:intergenic 20.0%
!! TGAACATATACATATTTACT+TGG - chr5_3:5105110-5105129 None:intergenic 20.0%
!!! TACTACTTTTGATTTCATTT+AGG + chr5_3:5104229-5104248 Msa0793100:intron 20.0%
!! TAAATAAAATATTGTTGGGT+TGG + chr5_3:5104574-5104593 Msa0793100:intron 20.0%
!! AAATAAAATATTGTTGGGTT+GGG + chr5_3:5104575-5104594 Msa0793100:intron 20.0%
!! ACAAAATATTGAAATCCAAT+AGG - chr5_3:5104952-5104971 None:intergenic 20.0%
!! TGAACATATACATATTTACT+TGG - chr5_3:5105110-5105129 None:intergenic 20.0%
! GTTTGTTTGATAAAAGAAGT+TGG - chr5_3:5103800-5103819 None:intergenic 25.0%
!! ACTTCTTTTATCAAACAAAC+AGG + chr5_3:5103800-5103819 Msa0793100:CDS 25.0%
! ATATCATATGATATGAATGC+AGG + chr5_3:5103953-5103972 Msa0793100:intron 25.0%
! ATGTATACTTTCTTCCTTAT+AGG + chr5_3:5104483-5104502 Msa0793100:intron 25.0%
! TATATATATATTTGGTCTGG+AGG + chr5_3:5104886-5104905 Msa0793100:three_prime_UTR 25.0%
!!! AATTTTGATCTTCGTGAATA+TGG - chr5_3:5105009-5105028 None:intergenic 25.0%
! TAAATGACTTTCAAAATGTC+AGG + chr5_3:5105028-5105047 Msa0793100:three_prime_UTR 25.0%
!! TACTTGGTAACTATCTATAT+AGG - chr5_3:5105094-5105113 None:intergenic 25.0%
! GTTTGTTTGATAAAAGAAGT+TGG - chr5_3:5103800-5103819 None:intergenic 25.0%
!! ACTTCTTTTATCAAACAAAC+AGG + chr5_3:5103800-5103819 Msa0793100:CDS 25.0%
! ATATCATATGATATGAATGC+AGG + chr5_3:5103953-5103972 Msa0793100:intron 25.0%
! ATGTATACTTTCTTCCTTAT+AGG + chr5_3:5104483-5104502 Msa0793100:intron 25.0%
! TATATATATATTTGGTCTGG+AGG + chr5_3:5104886-5104905 Msa0793100:three_prime_UTR 25.0%
!!! AATTTTGATCTTCGTGAATA+TGG - chr5_3:5105009-5105028 None:intergenic 25.0%
! TAAATGACTTTCAAAATGTC+AGG + chr5_3:5105028-5105047 Msa0793100:three_prime_UTR 25.0%
!! TACTTGGTAACTATCTATAT+AGG - chr5_3:5105094-5105113 None:intergenic 25.0%
AAATATCAACTCCAATCCAT+AGG - chr5_3:5103678-5103697 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG - chr5_3:5103797-5103816 None:intergenic 30.0%
! CTTTTATCAAACAAACAGGA+AGG + chr5_3:5103804-5103823 Msa0793100:CDS 30.0%
ACATACATACATACATACCT+TGG - chr5_3:5103900-5103919 None:intergenic 30.0%
TGATTATGAGAAAAGAGAAG+AGG - chr5_3:5104150-5104169 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG + chr5_3:5104241-5104260 Msa0793100:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG + chr5_3:5104322-5104341 Msa0793100:CDS 30.0%
CTGCTTGATAAGATGTATAA+TGG + chr5_3:5104430-5104449 Msa0793100:CDS 30.0%
! CATACCTTCTTCTAAGAATT+GGG - chr5_3:5104466-5104485 None:intergenic 30.0%
! ACATACCTTCTTCTAAGAAT+TGG - chr5_3:5104467-5104486 None:intergenic 30.0%
TCGCATTAACATTTGTTCTA+TGG - chr5_3:5104532-5104551 None:intergenic 30.0%
ATAGAACAAATGTTAATGCG+AGG + chr5_3:5104531-5104550 Msa0793100:intron 30.0%
! TAAAGCACTTGCTTTACTTA+TGG + chr5_3:5104600-5104619 Msa0793100:intron 30.0%
GCTTTACTTATGGAAATGTT+TGG + chr5_3:5104610-5104629 Msa0793100:intron 30.0%
AACTTAATGGAGTAGTATCA+GGG - chr5_3:5104641-5104660 None:intergenic 30.0%
TCAAGAAAACAGCAACTTAA+TGG - chr5_3:5104654-5104673 None:intergenic 30.0%
TACAGTACAGTGAATATAAC+AGG - chr5_3:5104699-5104718 None:intergenic 30.0%
AAATATCAACTCCAATCCAT+AGG - chr5_3:5103678-5103697 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG - chr5_3:5103797-5103816 None:intergenic 30.0%
! CTTTTATCAAACAAACAGGA+AGG + chr5_3:5103804-5103823 Msa0793100:CDS 30.0%
ACATACATACATACATACCT+TGG - chr5_3:5103900-5103919 None:intergenic 30.0%
TGATTATGAGAAAAGAGAAG+AGG - chr5_3:5104150-5104169 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG + chr5_3:5104241-5104260 Msa0793100:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG + chr5_3:5104322-5104341 Msa0793100:CDS 30.0%
CTGCTTGATAAGATGTATAA+TGG + chr5_3:5104430-5104449 Msa0793100:CDS 30.0%
! CATACCTTCTTCTAAGAATT+GGG - chr5_3:5104466-5104485 None:intergenic 30.0%
! ACATACCTTCTTCTAAGAAT+TGG - chr5_3:5104467-5104486 None:intergenic 30.0%
TCGCATTAACATTTGTTCTA+TGG - chr5_3:5104532-5104551 None:intergenic 30.0%
ATAGAACAAATGTTAATGCG+AGG + chr5_3:5104531-5104550 Msa0793100:intron 30.0%
! TAAAGCACTTGCTTTACTTA+TGG + chr5_3:5104600-5104619 Msa0793100:intron 30.0%
GCTTTACTTATGGAAATGTT+TGG + chr5_3:5104610-5104629 Msa0793100:intron 30.0%
AACTTAATGGAGTAGTATCA+GGG - chr5_3:5104641-5104660 None:intergenic 30.0%
TCAAGAAAACAGCAACTTAA+TGG - chr5_3:5104654-5104673 None:intergenic 30.0%
TACAGTACAGTGAATATAAC+AGG - chr5_3:5104699-5104718 None:intergenic 30.0%
TGATAAAAGAAGTTGGAGGA+AGG - chr5_3:5103793-5103812 None:intergenic 35.0%
ATACATACATACCTTGGAGT+TGG - chr5_3:5103894-5103913 None:intergenic 35.0%
GAAAATGGAAAGCTCTTAAC+AGG + chr5_3:5104272-5104291 Msa0793100:CDS 35.0%
TTTCCTCGACCATAACAATT+AGG - chr5_3:5104334-5104353 None:intergenic 35.0%
CTGAGAAGACCTTTATTGTT+TGG - chr5_3:5104391-5104410 None:intergenic 35.0%
CAAACAATAAAGGTCTTCTC+AGG + chr5_3:5104389-5104408 Msa0793100:CDS 35.0%
CATCTTATCAAGCAGTTTCT+TGG - chr5_3:5104425-5104444 None:intergenic 35.0%
! TCTTCTAAGAATTGGGAAGT+AGG - chr5_3:5104459-5104478 None:intergenic 35.0%
ACTTCCCAATTCTTAGAAGA+AGG + chr5_3:5104459-5104478 Msa0793100:exon 35.0%
ACTTAATGGAGTAGTATCAG+GGG - chr5_3:5104640-5104659 None:intergenic 35.0%
CAACTTAATGGAGTAGTATC+AGG - chr5_3:5104642-5104661 None:intergenic 35.0%
TTAACTGGTGGAGAAAATTG+TGG - chr5_3:5104793-5104812 None:intergenic 35.0%
! CCAAGCAAAATTTAGAGTTC+TGG - chr5_3:5104916-5104935 None:intergenic 35.0%
! CCAGAACTCTAAATTTTGCT+TGG + chr5_3:5104913-5104932 Msa0793100:three_prime_UTR 35.0%
! CTAGCAAGTATTGCTATGTA+AGG + chr5_3:5105067-5105086 Msa0793100:three_prime_UTR 35.0%
TGATAAAAGAAGTTGGAGGA+AGG - chr5_3:5103793-5103812 None:intergenic 35.0%
ATACATACATACCTTGGAGT+TGG - chr5_3:5103894-5103913 None:intergenic 35.0%
GAAAATGGAAAGCTCTTAAC+AGG + chr5_3:5104272-5104291 Msa0793100:CDS 35.0%
TTTCCTCGACCATAACAATT+AGG - chr5_3:5104334-5104353 None:intergenic 35.0%
CTGAGAAGACCTTTATTGTT+TGG - chr5_3:5104391-5104410 None:intergenic 35.0%
CAAACAATAAAGGTCTTCTC+AGG + chr5_3:5104389-5104408 Msa0793100:CDS 35.0%
CATCTTATCAAGCAGTTTCT+TGG - chr5_3:5104425-5104444 None:intergenic 35.0%
! TCTTCTAAGAATTGGGAAGT+AGG - chr5_3:5104459-5104478 None:intergenic 35.0%
ACTTCCCAATTCTTAGAAGA+AGG + chr5_3:5104459-5104478 Msa0793100:exon 35.0%
ACTTAATGGAGTAGTATCAG+GGG - chr5_3:5104640-5104659 None:intergenic 35.0%
CAACTTAATGGAGTAGTATC+AGG - chr5_3:5104642-5104661 None:intergenic 35.0%
TTAACTGGTGGAGAAAATTG+TGG - chr5_3:5104793-5104812 None:intergenic 35.0%
! CCAAGCAAAATTTAGAGTTC+TGG - chr5_3:5104916-5104935 None:intergenic 35.0%
! CCAGAACTCTAAATTTTGCT+TGG + chr5_3:5104913-5104932 Msa0793100:three_prime_UTR 35.0%
! CTAGCAAGTATTGCTATGTA+AGG + chr5_3:5105067-5105086 Msa0793100:three_prime_UTR 35.0%
ATCACTCTCTTCTTCTCCAT+CGG + chr5_3:5103728-5103747 Msa0793100:five_prime_UTR 40.0%
CAAATTGCAATCCATTCCGA+TGG - chr5_3:5103747-5103766 None:intergenic 40.0%
TCCACTCTTCCTCAAAATCA+AGG + chr5_3:5103848-5103867 Msa0793100:CDS 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG - chr5_3:5103852-5103871 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAAG+TGG + chr5_3:5103974-5103993 Msa0793100:intron 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG + chr5_3:5103997-5104016 Msa0793100:CDS 40.0%
GCCTGGAAACAACATTTACT+GGG - chr5_3:5104001-5104020 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG - chr5_3:5104018-5104037 None:intergenic 40.0%
CATTTAGGTGATATGTGTGG+TGG + chr5_3:5104244-5104263 Msa0793100:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG + chr5_3:5104328-5104347 Msa0793100:CDS 40.0%
CACCAGTTCCTAAACAAACA+GGG - chr5_3:5104366-5104385 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG - chr5_3:5104367-5104386 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG + chr5_3:5104379-5104398 Msa0793100:CDS 40.0%
ACAATAAAGGTCTTCTCAGG+AGG + chr5_3:5104392-5104411 Msa0793100:CDS 40.0%
TTGTGAGCACAACTGAATTG+AGG + chr5_3:5104741-5104760 Msa0793100:three_prime_UTR 40.0%
!! TCACTGGCTTAATTAACTGG+TGG - chr5_3:5104805-5104824 None:intergenic 40.0%
!! CAGTCACTGGCTTAATTAAC+TGG - chr5_3:5104808-5104827 None:intergenic 40.0%
AATTAAGCCAGTGACTGCAA+TGG + chr5_3:5104811-5104830 Msa0793100:three_prime_UTR 40.0%
CTGTGTATTCTAAGCTAGCT+AGG - chr5_3:5104846-5104865 None:intergenic 40.0%
GGTTACTAGTTAGCACCTAT+TGG + chr5_3:5104934-5104953 Msa0793100:three_prime_UTR 40.0%
ATCCTCAAAGATGTGTCAAG+CGG + chr5_3:5105158-5105177 Msa0793100:three_prime_UTR 40.0%
ATCACTCTCTTCTTCTCCAT+CGG + chr5_3:5103728-5103747 Msa0793100:five_prime_UTR 40.0%
CAAATTGCAATCCATTCCGA+TGG - chr5_3:5103747-5103766 None:intergenic 40.0%
TCCACTCTTCCTCAAAATCA+AGG + chr5_3:5103848-5103867 Msa0793100:CDS 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG - chr5_3:5103852-5103871 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAAG+TGG + chr5_3:5103974-5103993 Msa0793100:intron 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG + chr5_3:5103997-5104016 Msa0793100:CDS 40.0%
GCCTGGAAACAACATTTACT+GGG - chr5_3:5104001-5104020 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG - chr5_3:5104018-5104037 None:intergenic 40.0%
CATTTAGGTGATATGTGTGG+TGG + chr5_3:5104244-5104263 Msa0793100:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG + chr5_3:5104328-5104347 Msa0793100:CDS 40.0%
CACCAGTTCCTAAACAAACA+GGG - chr5_3:5104366-5104385 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG - chr5_3:5104367-5104386 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG + chr5_3:5104379-5104398 Msa0793100:CDS 40.0%
ACAATAAAGGTCTTCTCAGG+AGG + chr5_3:5104392-5104411 Msa0793100:CDS 40.0%
TTGTGAGCACAACTGAATTG+AGG + chr5_3:5104741-5104760 Msa0793100:three_prime_UTR 40.0%
!! TCACTGGCTTAATTAACTGG+TGG - chr5_3:5104805-5104824 None:intergenic 40.0%
!! CAGTCACTGGCTTAATTAAC+TGG - chr5_3:5104808-5104827 None:intergenic 40.0%
AATTAAGCCAGTGACTGCAA+TGG + chr5_3:5104811-5104830 Msa0793100:three_prime_UTR 40.0%
CTGTGTATTCTAAGCTAGCT+AGG - chr5_3:5104846-5104865 None:intergenic 40.0%
GGTTACTAGTTAGCACCTAT+TGG + chr5_3:5104934-5104953 Msa0793100:three_prime_UTR 40.0%
TCTCTTCTTCTCCATCGGAA+TGG + chr5_3:5103733-5103752 Msa0793100:exon 45.0%
!! CGGAATGGATTGCAATTTGC+AGG + chr5_3:5103748-5103767 Msa0793100:exon 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG - chr5_3:5103860-5103879 None:intergenic 45.0%
ACATACCTTGGAGTTGGAAG+AGG - chr5_3:5103888-5103907 None:intergenic 45.0%
CGCCTGGAAACAACATTTAC+TGG - chr5_3:5104002-5104021 None:intergenic 45.0%
ACCTGGAGGTTTATCAAGAG+CGG - chr5_3:5104087-5104106 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG + chr5_3:5104107-5104126 Msa0793100:CDS 45.0%
TGTGTGGTGGTACAGGAAAA+TGG + chr5_3:5104257-5104276 Msa0793100:CDS 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG + chr5_3:5104355-5104374 Msa0793100:CDS 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG + chr5_3:5104361-5104380 Msa0793100:CDS 45.0%
!! ATGGCTACGACAAGTTGGTT+GGG - chr5_3:5104513-5104532 None:intergenic 45.0%
!! TATGGCTACGACAAGTTGGT+TGG - chr5_3:5104514-5104533 None:intergenic 45.0%
GTTCTATGGCTACGACAAGT+TGG - chr5_3:5104518-5104537 None:intergenic 45.0%
!! GGCTTGCTAATGCTGATTTC+TGG + chr5_3:5104762-5104781 Msa0793100:three_prime_UTR 45.0%
CCAGTGACTGCAATGGTAAT+CGG + chr5_3:5104818-5104837 Msa0793100:three_prime_UTR 45.0%
TCCTCAAAGATGTGTCAAGC+GGG + chr5_3:5105159-5105178 Msa0793100:three_prime_UTR 45.0%
TCTCTTCTTCTCCATCGGAA+TGG + chr5_3:5103733-5103752 Msa0793100:exon 45.0%
!! CGGAATGGATTGCAATTTGC+AGG + chr5_3:5103748-5103767 Msa0793100:exon 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG - chr5_3:5103860-5103879 None:intergenic 45.0%
ACATACCTTGGAGTTGGAAG+AGG - chr5_3:5103888-5103907 None:intergenic 45.0%
CGCCTGGAAACAACATTTAC+TGG - chr5_3:5104002-5104021 None:intergenic 45.0%
ACCTGGAGGTTTATCAAGAG+CGG - chr5_3:5104087-5104106 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG + chr5_3:5104107-5104126 Msa0793100:CDS 45.0%
TGTGTGGTGGTACAGGAAAA+TGG + chr5_3:5104257-5104276 Msa0793100:CDS 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG + chr5_3:5104355-5104374 Msa0793100:CDS 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG + chr5_3:5104361-5104380 Msa0793100:CDS 45.0%
!! ATGGCTACGACAAGTTGGTT+GGG - chr5_3:5104513-5104532 None:intergenic 45.0%
!! TATGGCTACGACAAGTTGGT+TGG - chr5_3:5104514-5104533 None:intergenic 45.0%
GTTCTATGGCTACGACAAGT+TGG - chr5_3:5104518-5104537 None:intergenic 45.0%
!! GGCTTGCTAATGCTGATTTC+TGG + chr5_3:5104762-5104781 Msa0793100:three_prime_UTR 45.0%
CCAGTGACTGCAATGGTAAT+CGG + chr5_3:5104818-5104837 Msa0793100:three_prime_UTR 45.0%
!! CTTATATATATATATATATT+TGG + chr5_3:5104878-5104897 Msa0793100:three_prime_UTR 5.0%
!! CTTATATATATATATATATT+TGG + chr5_3:5104878-5104897 Msa0793100:three_prime_UTR 5.0%
AGAGCACACGACCTATGGAT+TGG + chr5_3:5103664-5103683 Msa0793100:five_prime_UTR 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG - chr5_3:5103877-5103896 None:intergenic 50.0%
TTCCTCCTCTTCCAACTCCA+AGG + chr5_3:5103880-5103899 Msa0793100:CDS 50.0%
TACCTTGGAGTTGGAAGAGG+AGG - chr5_3:5103885-5103904 None:intergenic 50.0%
ACCGCTCTTGATAAACCTCC+AGG + chr5_3:5104083-5104102 Msa0793100:CDS 50.0%
CCACAATTTCTGCAACCTGG+AGG - chr5_3:5104101-5104120 None:intergenic 50.0%
CCTCCAGGTTGCAGAAATTG+TGG + chr5_3:5104098-5104117 Msa0793100:CDS 50.0%
CCACCACAATTTCTGCAACC+TGG - chr5_3:5104104-5104123 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG + chr5_3:5104101-5104120 Msa0793100:CDS 50.0%
GGTGATATGTGTGGTGGTAC+AGG + chr5_3:5104250-5104269 Msa0793100:intron 50.0%
TCAAGCAGTTTCTTGGCGTC+AGG - chr5_3:5104418-5104437 None:intergenic 50.0%
!! CTACGACAAGTTGGTTGGGT+CGG - chr5_3:5104509-5104528 None:intergenic 50.0%
CCGATTACCATTGCAGTCAC+TGG - chr5_3:5104821-5104840 None:intergenic 50.0%
AGAGCACACGACCTATGGAT+TGG + chr5_3:5103664-5103683 Msa0793100:five_prime_UTR 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG - chr5_3:5103877-5103896 None:intergenic 50.0%
TTCCTCCTCTTCCAACTCCA+AGG + chr5_3:5103880-5103899 Msa0793100:CDS 50.0%
TACCTTGGAGTTGGAAGAGG+AGG - chr5_3:5103885-5103904 None:intergenic 50.0%
ACCGCTCTTGATAAACCTCC+AGG + chr5_3:5104083-5104102 Msa0793100:CDS 50.0%
CCACAATTTCTGCAACCTGG+AGG - chr5_3:5104101-5104120 None:intergenic 50.0%
CCTCCAGGTTGCAGAAATTG+TGG + chr5_3:5104098-5104117 Msa0793100:CDS 50.0%
CCACCACAATTTCTGCAACC+TGG - chr5_3:5104104-5104123 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG + chr5_3:5104101-5104120 Msa0793100:CDS 50.0%
GGTGATATGTGTGGTGGTAC+AGG + chr5_3:5104250-5104269 Msa0793100:intron 50.0%
TCAAGCAGTTTCTTGGCGTC+AGG - chr5_3:5104418-5104437 None:intergenic 50.0%
!! CTACGACAAGTTGGTTGGGT+CGG - chr5_3:5104509-5104528 None:intergenic 50.0%
CCGATTACCATTGCAGTCAC+TGG - chr5_3:5104821-5104840 None:intergenic 50.0%
!! GAAGTTGGAGGAAGGCATCG+AGG - chr5_3:5103785-5103804 None:intergenic 55.0%
GTTGGTTGGGTCGGCCTATA+AGG - chr5_3:5104500-5104519 None:intergenic 55.0%
!! GAAGTTGGAGGAAGGCATCG+AGG - chr5_3:5103785-5103804 None:intergenic 55.0%
GTTGGTTGGGTCGGCCTATA+AGG - chr5_3:5104500-5104519 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5103660 5105180 5103660 ID=Msa0793100;Name=Msa0793100
chr5_3 mRNA 5103660 5105180 5103660 ID=Msa0793100-mRNA-1;Parent=Msa0793100;Name=Msa0793100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|1|1|1|0.66|0.5|4|453|179
chr5_3 exon 5103660 5103901 5103660 ID=Msa0793100-mRNA-1:exon:1951;Parent=Msa0793100-mRNA-1
chr5_3 exon 5103975 5104140 5103975 ID=Msa0793100-mRNA-1:exon:1952;Parent=Msa0793100-mRNA-1
chr5_3 exon 5104251 5104480 5104251 ID=Msa0793100-mRNA-1:exon:1953;Parent=Msa0793100-mRNA-1
chr5_3 exon 5104734 5105180 5104734 ID=Msa0793100-mRNA-1:exon:1954;Parent=Msa0793100-mRNA-1
chr5_3 five_prime_UTR 5103660 5103751 5103660 ID=Msa0793100-mRNA-1:five_prime_utr;Parent=Msa0793100-mRNA-1
chr5_3 CDS 5103752 5103901 5103752 ID=Msa0793100-mRNA-1:cds;Parent=Msa0793100-mRNA-1
chr5_3 CDS 5103975 5104140 5103975 ID=Msa0793100-mRNA-1:cds;Parent=Msa0793100-mRNA-1
chr5_3 CDS 5104251 5104474 5104251 ID=Msa0793100-mRNA-1:cds;Parent=Msa0793100-mRNA-1
chr5_3 three_prime_UTR 5104475 5104480 5104475 ID=Msa0793100-mRNA-1:three_prime_utr;Parent=Msa0793100-mRNA-1
chr5_3 three_prime_UTR 5104734 5105180 5104734 ID=Msa0793100-mRNA-1:three_prime_utr;Parent=Msa0793100-mRNA-1
Gene Sequence

>Msa0793100

ATGGATTGCAATTTGCAGGCGTCTGTTATTCCTCGATGCCTTCCTCCAACTTCTTTTATCAAACAAACAGGAAGGACGCGTTCTTTTATTGTTAAATCCACTCTTCCTCAAAATCAAGGACACCACTCTTCCTCCTCTTCCAACTCCAAGGAAGAAGAAGAAGAAGAAGTGGTCCCAGTAAATGTTGTTTCCAGGCGTCAATGTCTTAAATGTTTATGTTCAACTCCATTTTTAATTAATGCAACAAACGCAGCAGCAACCGCTCTTGATAAACCTCCAGGTTGCAGAAATTGTGGTGGAAGTGGTAACATCATCTGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCACAAGATGTTTATGAGTTTACTGAATGTCCTAATTGTTATGGTCGAGGAAAGCTTGTCTGCCCTGTTTGTTTAGGAACTGGTGTGCCAAACAATAAAGGTCTTCTCAGGAGGCCTGACGCCAAGAAACTGCTTGATAAGATGTATAATGGACGCCTACTTCCCAATTCTTAG

Protein sequence

>Msa0793100

MDCNLQASVIPRCLPPTSFIKQTGRTRSFIVKSTLPQNQGHHSSSSSNSKEEEEEEVVPVNVVSRRQCLKCLCSTPFLINATNAAATALDKPPGCRNCGGSGNIICDMCGGTGKWKALNRKRAQDVYEFTECPNCYGRGKLVCPVCLGTGVPNNKGLLRRPDAKKLLDKMYNGRLLPNS*