AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1443550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443550 MtrunA17_Chr8g0348281 88.066 243 13 2 1 242 1 228 1.64e-158 438
Msa1443550 MtrunA17_Chr4g0019181 93.506 77 5 0 112 188 92 168 4.40e-49 159
Msa1443550 MtrunA17_Chr4g0019171 83.721 86 9 1 1 81 1 86 1.09e-44 145
Msa1443550 MtrunA17_Chr1g0190931 26.457 223 145 6 13 223 17 232 4.88e-19 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443550 AT2G46100.1 65.728 213 57 3 28 228 27 235 3.18e-102 296
Msa1443550 AT2G46100.2 58.000 150 47 3 28 165 27 172 9.53e-52 168
Msa1443550 AT3G04890.1 34.965 143 87 3 94 232 76 216 3.35e-22 91.3
Msa1443550 AT3G04890.3 34.965 143 87 3 94 232 80 220 4.18e-22 91.3
Msa1443550 AT3G04890.2 32.283 127 74 2 94 208 76 202 3.13e-16 75.5
Msa1443550 AT3G04890.4 32.283 127 74 2 94 208 80 206 3.94e-16 75.1

Find 63 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGAGGCCTATTCTTTC+TGG 0.046570 tig0030481:-19788 Msa1443550:intron
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 tig0030481:-21622 Msa1443550:exon
GTTGTTGTGACTCTTGATTT+TGG 0.256583 tig0030481:+21472 None:intergenic
CACTAACTTTGGATCACTTC+TGG 0.287804 tig0030481:-20232 Msa1443550:CDS
AAAGCTTGCTTAATTATTGA+TGG 0.297894 tig0030481:-18967 Msa1443550:three_prime_UTR
TTGTGGTGATGTTGTTGTTT+TGG 0.314085 tig0030481:+21540 None:intergenic
AGGAATATCCTGTATATATA+TGG 0.323875 tig0030481:-19105 Msa1443550:three_prime_UTR
TGCATTGAATTTGAAACCTA+TGG 0.325155 tig0030481:+21505 None:intergenic
TATGGTTTACCAGATTAATT+AGG 0.325566 tig0030481:-19087 Msa1443550:three_prime_UTR
ATGTTACTAGATTCAATGTT+TGG 0.338533 tig0030481:-21858 None:intergenic
GCTGTATCTTGTCCTTTCCT+TGG 0.347381 tig0030481:-19805 Msa1443550:CDS
ACAGAACAATGTATTTCTTA+AGG 0.354819 tig0030481:-21451 Msa1443550:CDS
CTGTGACAAAATAAGATCTT+TGG 0.367519 tig0030481:+21286 None:intergenic
CTTTGTTCAAGCAAATTCTA+AGG 0.368956 tig0030481:-19308 Msa1443550:CDS
TGGTATAGTTCTGAGCTTCT+AGG 0.369490 tig0030481:-21423 Msa1443550:CDS
AAAAGGAACTGCACTAACTT+TGG 0.371780 tig0030481:-20243 Msa1443550:CDS
CACATGTAAGTCTGTGGTAT+TGG 0.388973 tig0030481:-19173 Msa1443550:three_prime_UTR
CTGAAGTTGTCCAGGTGAAT+AGG 0.399442 tig0030481:-19243 Msa1443550:exon
GTATCTTGTCCTTTCCTTGG+AGG 0.412030 tig0030481:-19802 Msa1443550:CDS
CCATGACAGGATAAAGGAAT+TGG 0.428536 tig0030481:-19842 Msa1443550:intron
TTTGCTCCATGACAGGATAA+AGG 0.440137 tig0030481:-19848 Msa1443550:intron
GTTAGAATCTAAGAACAAAC+AGG 0.441894 tig0030481:+21662 None:intergenic
ATTCACAGACCTAATTAATC+TGG 0.444076 tig0030481:+19078 None:intergenic
CTGGTAAACCATATATATAC+AGG 0.446381 tig0030481:+19097 None:intergenic
CTTTCAGGCATGTGGAGCAT+TGG 0.446746 tig0030481:-19347 Msa1443550:intron
GTACTAATTATAGAAGTCTA+TGG 0.447623 tig0030481:-19147 Msa1443550:three_prime_UTR
TGAGATTTACCAGAAAGAAT+AGG 0.456237 tig0030481:+19779 None:intergenic
GTGGTGATGGTTGTGACTAA+TGG 0.469661 tig0030481:+21581 None:intergenic
TGAAGAGGATTGTGAATTTG+CGG 0.489339 tig0030481:-20301 Msa1443550:CDS
AAGGACTTCAGCGTTTCAAA+AGG 0.491123 tig0030481:-20260 Msa1443550:CDS
TTTAAGCTAAATCCCTTGCT+AGG 0.497530 tig0030481:+19285 None:intergenic
ATTAATTAGGTCTGTGAATG+TGG 0.499247 tig0030481:-19074 Msa1443550:three_prime_UTR
AGGTTTCAAATTCAATGCAA+TGG 0.509267 tig0030481:-21501 Msa1443550:CDS
AACTTAGATATTTAAATACA+AGG 0.509684 tig0030481:-21694 Msa1443550:five_prime_UTR
ATGTATTTCTTAAGGTTGCA+TGG 0.514798 tig0030481:-21443 Msa1443550:CDS
CTAGGTTGCTGAAGTTGTCC+AGG 0.518768 tig0030481:-19251 Msa1443550:CDS
TAGATATTTAAATACAAGGC+AGG 0.521780 tig0030481:-21690 Msa1443550:five_prime_UTR
GAAGCTTCTTCTTCATCAGA+TGG 0.522340 tig0030481:+21375 None:intergenic
CACAACAGAAGCACGATCAA+TGG 0.522503 tig0030481:+21329 None:intergenic
CACAATCAGGAAAAGTATGC+AGG 0.531502 tig0030481:-19449 Msa1443550:intron
CAACTATGAATCTTATGAAG+TGG 0.531678 tig0030481:-20203 Msa1443550:CDS
CCTGAAAACTTTCAGGCATG+TGG 0.535655 tig0030481:-19355 Msa1443550:intron
CATTGATCGTGCTTCTGTTG+TGG 0.537026 tig0030481:-21328 Msa1443550:CDS
TGTGAATTTGCGGATCCAGC+GGG 0.538988 tig0030481:-20291 Msa1443550:CDS
CACATTGAATGCATATGAAG+AGG 0.540073 tig0030481:-20316 Msa1443550:CDS
AACTATGAATCTTATGAAGT+GGG 0.541276 tig0030481:-20202 Msa1443550:CDS
CCAGAAAGAATAGGCCTCCA+AGG 0.545523 tig0030481:+19788 None:intergenic
GTAGAAGCTTATGATGTACT+AGG 0.548207 tig0030481:-19125 Msa1443550:three_prime_UTR
AGGATAAAGGAATTGGTCAC+TGG 0.548719 tig0030481:-19835 Msa1443550:CDS
GCAAATTCTAAGGCCTAGCA+AGG 0.551037 tig0030481:-19298 Msa1443550:CDS
ATATAATTTACCTATTCACC+TGG 0.562345 tig0030481:+19233 None:intergenic
CTTCTTCATCAGATGGAGAA+CGG 0.564350 tig0030481:+21382 None:intergenic
GCTTAAAAGATTATGTGACT+AGG 0.578708 tig0030481:-19269 Msa1443550:CDS
TTAAAATAACAGCTCTAGTG+TGG 0.582268 tig0030481:+21756 None:intergenic
AAGAATAGGCCTCCAAGGAA+AGG 0.586585 tig0030481:+19793 None:intergenic
AGAACAAAGAAGTGTGGTGA+TGG 0.594904 tig0030481:+21568 None:intergenic
ATTATACACATGTAAGTCTG+TGG 0.609997 tig0030481:-19179 Msa1443550:three_prime_UTR
AGTCCTTTAAAAGATCCCGC+TGG 0.610274 tig0030481:+20276 None:intergenic
TTGTGAATTTGCGGATCCAG+CGG 0.612444 tig0030481:-20292 Msa1443550:CDS
GTTTGAAGAAGTCTCTGAGG+AGG 0.641425 tig0030481:+21351 None:intergenic
CAAATTCTAAGGCCTAGCAA+GGG 0.670959 tig0030481:-19297 Msa1443550:CDS
ATGGTTTGAAGAAGTCTCTG+AGG 0.694702 tig0030481:+21348 None:intergenic
GTGCAAAGAACAAAGAAGTG+TGG 0.724805 tig0030481:+21562 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTACTTCATTTTTTTTT+TGG - tig0030481:18974-18993 Msa1443550:three_prime_UTR 15.0%
!! AACTTAGATATTTAAATACA+AGG - tig0030481:19096-19115 Msa1443550:three_prime_UTR 15.0%
!!! TAAAATTTGTTAGTTTAATC+AGG + tig0030481:19918-19937 None:intergenic 15.0%
!!! TACTACTCAATAATGTTTTA+GGG - tig0030481:20242-20261 Msa1443550:CDS 20.0%
!!! TTTTGTATCAGTCATTATAT+AGG + tig0030481:20359-20378 None:intergenic 20.0%
!!! GTATTTTGATTATAATCAGA+TGG - tig0030481:20410-20429 Msa1443550:intron 20.0%
!! GATTAAACTCTATTAAGTTA+AGG + tig0030481:20813-20832 None:intergenic 20.0%
!! TATAAAAAACACAAGTTTCT+AGG + tig0030481:20851-20870 None:intergenic 20.0%
!! AATTTCATTATGTTCATCAA+TGG + tig0030481:21067-21086 None:intergenic 20.0%
!! ATGTTCAAATTAACATGAAT+CGG - tig0030481:21179-21198 Msa1443550:intron 20.0%
!!! TATTATTTTGATACACAATC+AGG - tig0030481:21328-21347 Msa1443550:CDS 20.0%
!!! CTTCATTTTTTTTTTGGACA+TGG - tig0030481:18980-18999 Msa1443550:three_prime_UTR 25.0%
!!! TTTTTTTTTGGACATGGATT+TGG - tig0030481:18986-19005 Msa1443550:three_prime_UTR 25.0%
! TAGATATTTAAATACAAGGC+AGG - tig0030481:19100-19119 Msa1443550:three_prime_UTR 25.0%
!!! TATGGATTTTTGTGTTATTG+TGG + tig0030481:19270-19289 None:intergenic 25.0%
! ACAATAACACAAAAATCCAT+AGG - tig0030481:19269-19288 Msa1443550:CDS 25.0%
! ACAGAACAATGTATTTCTTA+AGG - tig0030481:19339-19358 Msa1443550:CDS 25.0%
!! TTTCATTTGATTTCTGTGTT+TGG - tig0030481:19582-19601 Msa1443550:intron 25.0%
!! TTCATTTGATTTCTGTGTTT+GGG - tig0030481:19583-19602 Msa1443550:intron 25.0%
! CATACTTAAAATTGAAGCTA+TGG + tig0030481:19619-19638 None:intergenic 25.0%
!!! CATAGCTTCAATTTTAAGTA+TGG - tig0030481:19617-19636 Msa1443550:intron 25.0%
!!! TGTCTTTTTTACACATCATT+TGG - tig0030481:19653-19672 Msa1443550:intron 25.0%
!! GAGAAAAAGTTGATTACAAT+CGG - tig0030481:19869-19888 Msa1443550:intron 25.0%
!!! ATTGCTATTTTAAGCACTTA+CGG + tig0030481:20070-20089 None:intergenic 25.0%
! TGCTTAAAATAGCAATACAA+AGG - tig0030481:20074-20093 Msa1443550:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG - tig0030481:20241-20260 Msa1443550:CDS 25.0%
! CAAAATGAAGCTAATACAAT+TGG - tig0030481:20374-20393 Msa1443550:intron 25.0%
! AACTATGAATCTTATGAAGT+GGG - tig0030481:20588-20607 Msa1443550:intron 25.0%
!! AATATAGAGTTTTGCAACTT+AGG - tig0030481:20660-20679 Msa1443550:intron 25.0%
! ATGTAATATCAAGAGTTACA+AGG + tig0030481:20720-20739 None:intergenic 25.0%
! CTCAATCTATTAGATATACA+TGG + tig0030481:21044-21063 None:intergenic 25.0%
! TGTTCAAATTAACATGAATC+GGG - tig0030481:21180-21199 Msa1443550:intron 25.0%
! ATATAATTTACCTATTCACC+TGG + tig0030481:21560-21579 None:intergenic 25.0%
! GTACTAATTATAGAAGTCTA+TGG - tig0030481:21643-21662 Msa1443550:five_prime_UTR 25.0%
! AGGAATATCCTGTATATATA+TGG - tig0030481:21685-21704 Msa1443550:five_prime_UTR 25.0%
! TATGGTTTACCAGATTAATT+AGG - tig0030481:21703-21722 Msa1443550:five_prime_UTR 25.0%
!!! CTTTTCTCTGTTATTTTTTC+TGG + tig0030481:21750-21769 None:intergenic 25.0%
! CAGAAAAAATAACAGAGAAA+AGG - tig0030481:21748-21767 Msa1443550:five_prime_UTR 25.0%
!! AAAGCTTGCTTAATTATTGA+TGG - tig0030481:21823-21842 Msa1443550:five_prime_UTR 25.0%
! TTAAAATAACAGCTCTAGTG+TGG + tig0030481:19037-19056 None:intergenic 30.0%
! CCACATAAAAATGGTGATTT+TGG + tig0030481:19061-19080 None:intergenic 30.0%
!! CCAAAATCACCATTTTTATG+TGG - tig0030481:19058-19077 Msa1443550:three_prime_UTR 30.0%
TAATGCTAGCCACATAAAAA+TGG + tig0030481:19070-19089 None:intergenic 30.0%
GTTAGAATCTAAGAACAAAC+AGG + tig0030481:19131-19150 None:intergenic 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG - tig0030481:19168-19187 Msa1443550:three_prime_UTR 30.0%
! TGCATTGAATTTGAAACCTA+TGG + tig0030481:19288-19307 None:intergenic 30.0%
AGGTTTCAAATTCAATGCAA+TGG - tig0030481:19289-19308 Msa1443550:CDS 30.0%
ATGTATTTCTTAAGGTTGCA+TGG - tig0030481:19347-19366 Msa1443550:intron 30.0%
CTGTGACAAAATAAGATCTT+TGG + tig0030481:19507-19526 None:intergenic 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG - tig0030481:19505-19524 Msa1443550:intron 30.0%
!!! ATGCTTTTTCTTATGAAACG+TGG - tig0030481:19544-19563 Msa1443550:intron 30.0%
!! TCATTTGGATGATTGATTTG+TGG - tig0030481:19668-19687 Msa1443550:intron 30.0%
ATTCCTAGTTACTGATAAGT+GGG - tig0030481:19725-19744 Msa1443550:intron 30.0%
AACGTTTATTGGGTTATGAT+TGG - tig0030481:19765-19784 Msa1443550:intron 30.0%
ACGTTTATTGGGTTATGATT+GGG - tig0030481:19766-19785 Msa1443550:intron 30.0%
!! GTATCTTTTACTTTTGAACC+AGG - tig0030481:20186-20205 Msa1443550:intron 30.0%
!!! CTCAATAATGTTTTAGGGAT+TGG - tig0030481:20247-20266 Msa1443550:CDS 30.0%
TTATAATCAGATGGTTCACA+TGG - tig0030481:20419-20438 Msa1443550:intron 30.0%
CAACTATGAATCTTATGAAG+TGG - tig0030481:20587-20606 Msa1443550:intron 30.0%
TTACATGCAACTGATGATAA+AGG - tig0030481:20734-20753 Msa1443550:intron 30.0%
! TCAATCTTTTTATCGAGTGT+TGG - tig0030481:20882-20901 Msa1443550:intron 30.0%
TGAGATTTACCAGAAAGAAT+AGG + tig0030481:21014-21033 None:intergenic 30.0%
TGTATTTATCTGCATTTGAC+TGG - tig0030481:21113-21132 Msa1443550:intron 30.0%
ACGAAAAATAAATCCAAGAG+AGG + tig0030481:21141-21160 None:intergenic 30.0%
! CGGGTTTTTAATAGAATATG+TGG - tig0030481:21199-21218 Msa1443550:intron 30.0%
TGCTGCAACATATATTAACA+TGG + tig0030481:21293-21312 None:intergenic 30.0%
TTAATATATGTTGCAGCAAC+TGG - tig0030481:21295-21314 Msa1443550:CDS 30.0%
CTAAATTCCTGAAAACTTTC+AGG - tig0030481:21428-21447 Msa1443550:CDS 30.0%
CTTTGTTCAAGCAAATTCTA+AGG - tig0030481:21482-21501 Msa1443550:CDS 30.0%
GCTTAAAAGATTATGTGACT+AGG - tig0030481:21521-21540 Msa1443550:CDS 30.0%
ATTATACACATGTAAGTCTG+TGG - tig0030481:21611-21630 Msa1443550:exon 30.0%
CTGGTAAACCATATATATAC+AGG + tig0030481:21696-21715 None:intergenic 30.0%
ATTCACAGACCTAATTAATC+TGG + tig0030481:21715-21734 None:intergenic 30.0%
ATTAATTAGGTCTGTGAATG+TGG - tig0030481:21716-21735 Msa1443550:five_prime_UTR 30.0%
!!! TTGTGGTGATGTTGTTGTTT+TGG + tig0030481:19253-19272 None:intergenic 35.0%
! GTTGTTGTGACTCTTGATTT+TGG + tig0030481:19321-19340 None:intergenic 35.0%
!! GATGATTGATTTGTGGAGAA+AGG - tig0030481:19675-19694 Msa1443550:intron 35.0%
CATGACTATTCAGAGTTGTT+AGG - tig0030481:19698-19717 Msa1443550:intron 35.0%
GATTCCTAGTTACTGATAAG+TGG - tig0030481:19724-19743 Msa1443550:intron 35.0%
CGTTTATTGGGTTATGATTG+GGG - tig0030481:19767-19786 Msa1443550:intron 35.0%
GTTTATTGGGTTATGATTGG+GGG - tig0030481:19768-19787 Msa1443550:intron 35.0%
TTTATTGGGTTATGATTGGG+GGG - tig0030481:19769-19788 Msa1443550:intron 35.0%
TCAGGAGCAATGTTGTAATA+TGG - tig0030481:20005-20024 Msa1443550:intron 35.0%
GTAATGCTGAGAACAAAAAG+AGG - tig0030481:20269-20288 Msa1443550:CDS 35.0%
CACATTGAATGCATATGAAG+AGG - tig0030481:20474-20493 Msa1443550:intron 35.0%
TGAAGAGGATTGTGAATTTG+CGG - tig0030481:20489-20508 Msa1443550:intron 35.0%
AAAAGGAACTGCACTAACTT+TGG - tig0030481:20547-20566 Msa1443550:intron 35.0%
! TATGAAGTGGGAAGATTTTG+AGG - tig0030481:20600-20619 Msa1443550:intron 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG + tig0030481:20635-20654 None:intergenic 35.0%
GATGATAAAGGTTTCTGATG+CGG - tig0030481:20746-20765 Msa1443550:intron 35.0%
CTATTAAGTTAAGGCTGCTT+AGG + tig0030481:20804-20823 None:intergenic 35.0%
!! GTTTCTAGGATATGTTTAGC+AGG + tig0030481:20837-20856 None:intergenic 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG + tig0030481:21475-21494 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+AGG + tig0030481:21508-21527 None:intergenic 35.0%
GTAGAAGCTTATGATGTACT+AGG - tig0030481:21665-21684 Msa1443550:five_prime_UTR 35.0%
! AGAACAAAGAAGTGTGGTGA+TGG + tig0030481:19225-19244 None:intergenic 40.0%
GTGCAAAGAACAAAGAAGTG+TGG + tig0030481:19231-19250 None:intergenic 40.0%
!! TGGTATAGTTCTGAGCTTCT+AGG - tig0030481:19367-19386 Msa1443550:intron 40.0%
CTTCTTCATCAGATGGAGAA+CGG + tig0030481:19411-19430 None:intergenic 40.0%
GAAGCTTCTTCTTCATCAGA+TGG + tig0030481:19418-19437 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+AGG + tig0030481:19445-19464 None:intergenic 40.0%
CTACCCACTTATCAGTAACT+AGG + tig0030481:19731-19750 None:intergenic 40.0%
CTAGTTACTGATAAGTGGGT+AGG - tig0030481:19729-19748 Msa1443550:intron 40.0%
TTACTGATAAGTGGGTAGGT+CGG - tig0030481:19733-19752 Msa1443550:intron 40.0%
GTTAGAATAGAACAGCAACC+TGG + tig0030481:20207-20226 None:intergenic 40.0%
AAGGACTTCAGCGTTTCAAA+AGG - tig0030481:20530-20549 Msa1443550:intron 40.0%
CACTAACTTTGGATCACTTC+TGG - tig0030481:20558-20577 Msa1443550:intron 40.0%
TCATACATTTGCTCCATGAC+AGG - tig0030481:20935-20954 Msa1443550:intron 40.0%
TTTGCTCCATGACAGGATAA+AGG - tig0030481:20942-20961 Msa1443550:intron 40.0%
CCAATTCCTTTATCCTGTCA+TGG + tig0030481:20951-20970 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG - tig0030481:20948-20967 Msa1443550:intron 40.0%
AGGATAAAGGAATTGGTCAC+TGG - tig0030481:20955-20974 Msa1443550:intron 40.0%
! CACAATCAGGAAAAGTATGC+AGG - tig0030481:21341-21360 Msa1443550:CDS 40.0%
GCATTGGAATGTGCCAAAAA+TGG - tig0030481:21459-21478 Msa1443550:CDS 40.0%
!! CAAATTCTAAGGCCTAGCAA+GGG - tig0030481:21493-21512 Msa1443550:CDS 40.0%
CACATGTAAGTCTGTGGTAT+TGG - tig0030481:21617-21636 Msa1443550:exon 40.0%
!! GTGGTGATGGTTGTGACTAA+TGG + tig0030481:19212-19231 None:intergenic 45.0%
! GTTTGAAGAAGTCTCTGAGG+AGG + tig0030481:19442-19461 None:intergenic 45.0%
! CACAACAGAAGCACGATCAA+TGG + tig0030481:19464-19483 None:intergenic 45.0%
CATTGATCGTGCTTCTGTTG+TGG - tig0030481:19462-19481 Msa1443550:CDS 45.0%
GCCAGGCTCAAACGTTTATT+GGG - tig0030481:19755-19774 Msa1443550:intron 45.0%
ACCCAATAAACGTTTGAGCC+TGG + tig0030481:19759-19778 None:intergenic 45.0%
AACACTTTGCTCCAACAGTG+TGG - tig0030481:19981-20000 Msa1443550:intron 45.0%
ATCTATTCCTCCCAACTCTC+AGG - tig0030481:20445-20464 Msa1443550:intron 45.0%
TGTGAGATCTCCTGAGAGTT+GGG + tig0030481:20458-20477 None:intergenic 45.0%
ATGTGAGATCTCCTGAGAGT+TGG + tig0030481:20459-20478 None:intergenic 45.0%
TTGTGAATTTGCGGATCCAG+CGG - tig0030481:20498-20517 Msa1443550:intron 45.0%
! GATCCAGCGGGATCTTTTAA+AGG - tig0030481:20511-20530 Msa1443550:intron 45.0%
! AGTCCTTTAAAAGATCCCGC+TGG + tig0030481:20517-20536 None:intergenic 45.0%
GCTGTATCTTGTCCTTTCCT+TGG - tig0030481:20985-21004 Msa1443550:intron 45.0%
GTATCTTGTCCTTTCCTTGG+AGG - tig0030481:20988-21007 Msa1443550:intron 45.0%
AAGAATAGGCCTCCAAGGAA+AGG + tig0030481:21000-21019 None:intergenic 45.0%
CATTTGACTGGAACCTCTCT+TGG - tig0030481:21125-21144 Msa1443550:intron 45.0%
! CCACATGCCTGAAAGTTTTC+AGG + tig0030481:21438-21457 None:intergenic 45.0%
CCTGAAAACTTTCAGGCATG+TGG - tig0030481:21435-21454 Msa1443550:CDS 45.0%
!! GCAAATTCTAAGGCCTAGCA+AGG - tig0030481:21492-21511 Msa1443550:CDS 45.0%
CTGAAGTTGTCCAGGTGAAT+AGG - tig0030481:21547-21566 Msa1443550:CDS 45.0%
GGCCAGGCTCAAACGTTTAT+TGG - tig0030481:19754-19773 Msa1443550:intron 50.0%
TTGCTCCAACAGTGTGGTTC+AGG - tig0030481:19987-20006 Msa1443550:intron 50.0%
TTGCTCCTGAACCACACTGT+TGG + tig0030481:19995-20014 None:intergenic 50.0%
TGTGAATTTGCGGATCCAGC+GGG - tig0030481:20499-20518 Msa1443550:intron 50.0%
CCAGAAAGAATAGGCCTCCA+AGG + tig0030481:21005-21024 None:intergenic 50.0%
CCTTGGAGGCCTATTCTTTC+TGG - tig0030481:21002-21021 Msa1443550:intron 50.0%
CTTTCAGGCATGTGGAGCAT+TGG - tig0030481:21443-21462 Msa1443550:CDS 50.0%
CTAGGTTGCTGAAGTTGTCC+AGG - tig0030481:21539-21558 Msa1443550:CDS 50.0%
ACTGCATCCCGCTTTGCAGT+CGG - tig0030481:20098-20117 Msa1443550:intron 55.0%
TACGTCTCCGACTGCAAAGC+GGG + tig0030481:20108-20127 None:intergenic 55.0%
CTACGTCTCCGACTGCAAAG+CGG + tig0030481:20109-20128 None:intergenic 55.0%
GAGATCTCCTGAGAGTTGGG+AGG + tig0030481:20455-20474 None:intergenic 55.0%
GATAAGTGGGTAGGTCGGCC+AGG - tig0030481:19738-19757 Msa1443550:intron 60.0%
CGCTTTGCAGTCGGAGACGT+AGG - tig0030481:20107-20126 Msa1443550:intron 60.0%
Chromosome Type Strat End Strand Name
tig0030481 gene 18947 21865 18947 ID=Msa1443550;Name=Msa1443550
tig0030481 mRNA 18947 21865 18947 ID=Msa1443550-mRNA-1;Parent=Msa1443550;Name=Msa1443550-mRNA-1;_AED=0.20;_eAED=0.20;_QI=240|1|1|1|1|1|5|301|242
tig0030481 exon 18947 19362 18947 ID=Msa1443550-mRNA-1:exon:13990;Parent=Msa1443550-mRNA-1
tig0030481 exon 19450 19501 19450 ID=Msa1443550-mRNA-1:exon:13989;Parent=Msa1443550-mRNA-1
tig0030481 exon 19789 19855 19789 ID=Msa1443550-mRNA-1:exon:13988;Parent=Msa1443550-mRNA-1
tig0030481 exon 20191 20345 20191 ID=Msa1443550-mRNA-1:exon:13987;Parent=Msa1443550-mRNA-1
tig0030481 exon 21286 21865 21286 ID=Msa1443550-mRNA-1:exon:13986;Parent=Msa1443550-mRNA-1
tig0030481 five_prime_UTR 21626 21865 21626 ID=Msa1443550-mRNA-1:five_prime_utr;Parent=Msa1443550-mRNA-1
tig0030481 CDS 21286 21625 21286 ID=Msa1443550-mRNA-1:cds;Parent=Msa1443550-mRNA-1
tig0030481 CDS 20191 20345 20191 ID=Msa1443550-mRNA-1:cds;Parent=Msa1443550-mRNA-1
tig0030481 CDS 19789 19855 19789 ID=Msa1443550-mRNA-1:cds;Parent=Msa1443550-mRNA-1
tig0030481 CDS 19450 19501 19450 ID=Msa1443550-mRNA-1:cds;Parent=Msa1443550-mRNA-1
tig0030481 CDS 19248 19362 19248 ID=Msa1443550-mRNA-1:cds;Parent=Msa1443550-mRNA-1
tig0030481 three_prime_UTR 18947 19247 18947 ID=Msa1443550-mRNA-1:three_prime_utr;Parent=Msa1443550-mRNA-1
Gene Sequence

>Msa1443550

ATGGCATTGTCTGCTATATCTTCCATTAGTCACAACCATCACCACACTTCTTTGTTCTTTGCACCAAAACAACAACATCACCACAATAACACAAAAATCCATAGGTTTCAAATTCAATGCAATGGAACAAACCAAAATCAAGAGTCACAACAACAGAACAATGTATTTCTTAAGGTTGCATGGTATAGTTCTGAGCTTCTAGGCATTGCTGCTTCTACTTTCCGTTCTCCATCTGATGAAGAAGAAGCTTCTCCTCCTCAGAGACTTCTTCAAACCATTGATCGTGCTTCTGTTGTGGACACAATCAAACAAGATTTCCAAAGATCTTATTTTGTCACAGGAGATCTCACATTGAATGCATATGAAGAGGATTGTGAATTTGCGGATCCAGCGGGATCTTTTAAAGGACTTCAGCGTTTCAAAAGGAACTGCACTAACTTTGGATCACTTCTGGAGAAGTCAACTATGAATCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGGCCTATTCTTTCTGCAACTGGATACACAGAATATTATTTTGATACACAATCAGGAAAAGTATGCAGGCATGTGGAGCATTGGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAGCAAGGGATTTAGCTTAAAAGATTATGTGACTAGGTTGCTGAAGTTGTCCAGGTGA

Protein sequence

>Msa1443550

MALSAISSISHNHHHTSLFFAPKQQHHHNNTKIHRFQIQCNGTNQNQESQQQNNVFLKVAWYSSELLGIAASTFRSPSDEEEASPPQRLLQTIDRASVVDTIKQDFQRSYFVTGDLTLNAYEEDCEFADPAGSFKGLQRFKRNCTNFGSLLEKSTMNLMKWEDFEDKGIGHWRFSCILSFPWRPILSATGYTEYYFDTQSGKVCRHVEHWNVPKMALFKQILRPSKGFSLKDYVTRLLKLSR*