Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676270 | XP_013442809.2 | 95.238 | 210 | 10 | 0 | 1 | 210 | 1 | 210 | 9.66e-141 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676270 | A0A396I2U5 | 95.238 | 210 | 10 | 0 | 1 | 210 | 1 | 210 | 4.61e-141 | 401 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017390 | Msa0676270 | 0.808182 | 3.512159e-50 | -8.615850e-47 |
| Msa0056450 | Msa0676270 | 0.814072 | 1.856197e-51 | -8.615850e-47 |
| Msa0641730 | Msa0676270 | 0.800761 | 1.238394e-48 | -8.615850e-47 |
| Msa0652690 | Msa0676270 | 0.806191 | 9.272940e-50 | -8.615850e-47 |
| Msa0661320 | Msa0676270 | 0.816013 | 6.881589e-52 | -8.615850e-47 |
| Msa0672450 | Msa0676270 | 0.835601 | 1.525680e-56 | -8.615850e-47 |
| Msa0672480 | Msa0676270 | 0.826911 | 2.091956e-54 | -8.615850e-47 |
| Msa0676270 | Msa0705190 | 0.803008 | 4.278920e-49 | -8.615850e-47 |
| Msa0676270 | Msa0868160 | 0.812405 | 4.310159e-51 | -8.615850e-47 |
| Msa0676270 | Msa0945240 | 0.807854 | 4.124606e-50 | -8.615850e-47 |
| Msa0676270 | Msa1038080 | 0.805178 | 1.512953e-49 | -8.615850e-47 |
| Msa0676270 | Msa1381480 | 0.809175 | 2.155097e-50 | -8.615850e-47 |
| Msa0676270 | Msa1416370 | 0.831973 | 1.232208e-55 | -8.615850e-47 |
| Msa0676270 | Msa1424780 | 0.800409 | 1.460866e-48 | -8.615850e-47 |
| Msa0174390 | Msa0676270 | 0.808727 | 2.687262e-50 | -8.615850e-47 |
| Msa0188150 | Msa0676270 | 0.829417 | 5.208466e-55 | -8.615850e-47 |
| Msa0410300 | Msa0676270 | 0.805531 | 1.276267e-49 | -8.615850e-47 |
| Msa0428050 | Msa0676270 | 0.806981 | 6.317679e-50 | -8.615850e-47 |
| Msa0480780 | Msa0676270 | 0.807003 | 6.249306e-50 | -8.615850e-47 |
| Msa0517090 | Msa0676270 | 0.850539 | 1.590521e-60 | -8.615850e-47 |
| Msa0521670 | Msa0676270 | 0.821524 | 3.856474e-53 | -8.615850e-47 |
| Msa0548920 | Msa0676270 | 0.843372 | 1.459294e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676270 | MtrunA17_Chr4g0019771 | 95.238 | 210 | 10 | 0 | 1 | 210 | 1 | 210 | 8.88e-145 | 401 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676270 | AT1G61415.1 | 50.000 | 162 | 78 | 1 | 1 | 162 | 1 | 159 | 9.73e-45 | 147 |
| Msa0676270 | AT1G61415.2 | 46.207 | 145 | 75 | 1 | 18 | 162 | 1 | 142 | 6.95e-35 | 121 |
| Msa0676270 | AT1G61450.1 | 49.515 | 103 | 52 | 0 | 1 | 103 | 1 | 103 | 1.81e-26 | 99.0 |
Find 30 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAATTAATTACCAAATT+TGG | 0.132371 | 4_4:-26696012 | None:intergenic |
| TCCATATTATAGCTGGTTTC+AGG | 0.147934 | 4_4:+26694476 | Msa0676270:intron |
| TTTGTCAACTTTGCCAAATT+TGG | 0.218122 | 4_4:+26695999 | Msa0676270:three_prime_UTR |
| CAATTTCTCTTTGAAATTCT+AGG | 0.264996 | 4_4:-26695454 | None:intergenic |
| TAATTCATAGTTCTGAAGTA+TGG | 0.316488 | 4_4:+26695976 | Msa0676270:three_prime_UTR |
| CTCTTCGCATTTGACGATGC+TGG | 0.383965 | 4_4:-26692988 | None:intergenic |
| AGAAATTGAATCTCATATTC+AGG | 0.384121 | 4_4:+26692947 | Msa0676270:CDS |
| CTGAGATCCAGAGCAAGAAC+TGG | 0.388299 | 4_4:+26695847 | Msa0676270:CDS |
| TGAAAAGGAAATTCAACTCT+TGG | 0.390140 | 4_4:+26695529 | Msa0676270:CDS |
| CATTCTCCCAGTTCTTGCTC+TGG | 0.401003 | 4_4:-26695854 | None:intergenic |
| CCATATTATAGCTGGTTTCA+GGG | 0.419672 | 4_4:+26694477 | Msa0676270:intron |
| AGAGAAATATTCACTTGAAA+AGG | 0.440197 | 4_4:+26695514 | Msa0676270:CDS |
| AATTTGGTAATTAATTAAGA+TGG | 0.456259 | 4_4:+26696015 | Msa0676270:three_prime_UTR |
| TTGTAAAGTGAGGACTTTGT+TGG | 0.483498 | 4_4:+26695490 | Msa0676270:CDS |
| CAGGGAATCAGTGAGTACTT+TGG | 0.487807 | 4_4:+26694495 | Msa0676270:CDS |
| CTCTCACATTTCATCTCTCA+AGG | 0.488977 | 4_4:+26692807 | Msa0676270:CDS |
| GTTGGATTTGTAACTGTCAC+TGG | 0.496639 | 4_4:+26693080 | Msa0676270:CDS |
| TCTCAAGGAAATGCTCGATC+AGG | 0.500609 | 4_4:+26692822 | Msa0676270:CDS |
| AACACAACAATGGAAGATTC+AGG | 0.502293 | 4_4:+26692775 | Msa0676270:exon |
| TTCTGATGAAGTAGTAAGAA+TGG | 0.507235 | 4_4:+26696085 | Msa0676270:three_prime_UTR |
| GGACGATATGGTTAACAGAA+TGG | 0.534903 | 4_4:+26694549 | Msa0676270:CDS |
| CATCGTCAAATGCGAAGAGA+TGG | 0.541364 | 4_4:+26692992 | Msa0676270:CDS |
| GATCTTCATAATTCAAACTC+AGG | 0.543274 | 4_4:+26695611 | Msa0676270:CDS |
| GTTCTGCAGTTTGACACTGT+TGG | 0.572744 | 4_4:+26693062 | Msa0676270:CDS |
| ATCAGTGAGTACTTTGGAGA+AGG | 0.572875 | 4_4:+26694501 | Msa0676270:CDS |
| ACTAAGGAAGCTGAATTGAT+CGG | 0.587240 | 4_4:+26693029 | Msa0676270:CDS |
| TGAGATCCAGAGCAAGAACT+GGG | 0.592261 | 4_4:+26695848 | Msa0676270:CDS |
| GCTGAATTGATCGGAATCTG+TGG | 0.601646 | 4_4:+26693038 | Msa0676270:CDS |
| ATAGAGAAAATTGTAAAGTG+AGG | 0.634744 | 4_4:+26695480 | Msa0676270:CDS |
| GTAACAGAACAACACAACAA+TGG | 0.713754 | 4_4:+26692765 | Msa0676270:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTTCAAATTATTAT+CGG | + | chr4_4:26693383-26693402 | Msa0676270:intron | 10.0% |
| !! | TTTGTGTTAATTAATATATT+AGG | + | chr4_4:26693531-26693550 | Msa0676270:intron | 10.0% |
| !! | TTATTTAACAATTAATTGTT+CGG | + | chr4_4:26694406-26694425 | Msa0676270:intron | 10.0% |
| !!! | CTTTAATCTATTTTTATATC+TGG | + | chr4_4:26694143-26694162 | Msa0676270:intron | 15.0% |
| !! | TGAAGAAATATAAATATAAC+AGG | - | chr4_4:26694188-26694207 | None:intergenic | 15.0% |
| !! | TAAAAACTAAAAAGAATTCA+CGG | - | chr4_4:26694351-26694370 | None:intergenic | 15.0% |
| !! | AGTACTATCATTATTATATT+TGG | - | chr4_4:26694914-26694933 | None:intergenic | 15.0% |
| !! | TACTAATATATAAAGACAAA+TGG | + | chr4_4:26695008-26695027 | Msa0676270:intron | 15.0% |
| !!! | ATTAAAGATATTTAAGATGT+TGG | + | chr4_4:26695107-26695126 | Msa0676270:intron | 15.0% |
| !!! | ATATATTTACGTTTGTTTTA+TGG | - | chr4_4:26695202-26695221 | None:intergenic | 15.0% |
| !!! | TTTTTCTATTCAAATAGAAA+AGG | + | chr4_4:26695258-26695277 | Msa0676270:intron | 15.0% |
| !! | ATTGAAATGTTACATAATTA+AGG | - | chr4_4:26695370-26695389 | None:intergenic | 15.0% |
| !! | TATATATGTTAATCCTTATT+TGG | - | chr4_4:26695751-26695770 | None:intergenic | 15.0% |
| !!! | ATTAACTTTTGTTTAAAGAA+AGG | - | chr4_4:26695960-26695979 | None:intergenic | 15.0% |
| !! | TCTTAATTAATTACCAAATT+TGG | - | chr4_4:26696015-26696034 | None:intergenic | 15.0% |
| !!! | AATTTGGTAATTAATTAAGA+TGG | + | chr4_4:26696015-26696034 | Msa0676270:three_prime_UTR | 15.0% |
| !! | TTCATTATTACTGATCAATT+AGG | + | chr4_4:26692917-26692936 | Msa0676270:intron | 20.0% |
| !!! | CAGATTATTGATCAAATTTT+TGG | + | chr4_4:26693221-26693240 | Msa0676270:intron | 20.0% |
| !! | AATTTAACAGATCAAATTGT+TGG | - | chr4_4:26693491-26693510 | None:intergenic | 20.0% |
| !!! | AAATAGTATTTGCAACTTTT+TGG | + | chr4_4:26693666-26693685 | Msa0676270:intron | 20.0% |
| !! | AAAGATTGTTTACTGAAATT+TGG | + | chr4_4:26693743-26693762 | Msa0676270:intron | 20.0% |
| !! | AAATTTGGATTGTTATATCA+AGG | + | chr4_4:26693758-26693777 | Msa0676270:intron | 20.0% |
| !! | AAGAAAATCAAAAACAAAGT+GGG | - | chr4_4:26693990-26694009 | None:intergenic | 20.0% |
| !! | TGCAGTAATAATTATCAATA+GGG | + | chr4_4:26694061-26694080 | Msa0676270:intron | 20.0% |
| !!! | TTTTTATACTGTTTTGCTTA+TGG | + | chr4_4:26694434-26694453 | Msa0676270:intron | 20.0% |
| !!! | TTTTATACTGTTTTGCTTAT+GGG | + | chr4_4:26694435-26694454 | Msa0676270:intron | 20.0% |
| !!! | TCCATTTTTAACTTTTTGTT+TGG | + | chr4_4:26694711-26694730 | Msa0676270:intron | 20.0% |
| !! | ATAAATTCATATATCTGAGT+TGG | - | chr4_4:26695319-26695338 | None:intergenic | 20.0% |
| !!! | GAATTGTGTTTTGAAAAATT+CGG | + | chr4_4:26695559-26695578 | Msa0676270:CDS | 20.0% |
| ! | AGAAATTGAATCTCATATTC+AGG | + | chr4_4:26692947-26692966 | Msa0676270:CDS | 25.0% |
| ! | TCAGAACAATCAATGATATA+AGG | - | chr4_4:26693144-26693163 | None:intergenic | 25.0% |
| ! | CTTCATAGATATTATCTGAA+TGG | + | chr4_4:26693443-26693462 | Msa0676270:intron | 25.0% |
| ! | TAGATATTATCTGAATGGAA+TGG | + | chr4_4:26693448-26693467 | Msa0676270:intron | 25.0% |
| ! | AATTATTCTCTGTAATATCG+TGG | + | chr4_4:26693820-26693839 | Msa0676270:intron | 25.0% |
| ! | AGAAAATCAAAAACAAAGTG+GGG | - | chr4_4:26693989-26694008 | None:intergenic | 25.0% |
| ! | CAAGAAAATCAAAAACAAAG+TGG | - | chr4_4:26693991-26694010 | None:intergenic | 25.0% |
| !!! | CACTTTGTTTTTGATTTTCT+TGG | + | chr4_4:26693989-26694008 | Msa0676270:intron | 25.0% |
| ! | GTGCAGTAATAATTATCAAT+AGG | + | chr4_4:26694060-26694079 | Msa0676270:intron | 25.0% |
| !! | AAAGAAAAGCATATGCTTAT+TGG | - | chr4_4:26694127-26694146 | None:intergenic | 25.0% |
| !!! | ATTTTGACAAATAACCAACT+TGG | + | chr4_4:26694210-26694229 | Msa0676270:intron | 25.0% |
| ! | AATTTGAAGAAATCAGCATA+TGG | + | chr4_4:26694258-26694277 | Msa0676270:intron | 25.0% |
| ! | AAAGATTAATCACTACTATG+CGG | + | chr4_4:26694325-26694344 | Msa0676270:intron | 25.0% |
| !!! | TTTTTTCTCCATATTATAGC+TGG | + | chr4_4:26694469-26694488 | Msa0676270:intron | 25.0% |
| ! | TTAACAGAATGGATGAAAAA+CGG | + | chr4_4:26694560-26694579 | Msa0676270:CDS | 25.0% |
| !!! | AACTGCTGGAATTATTTTTT+GGG | + | chr4_4:26694644-26694663 | Msa0676270:intron | 25.0% |
| !!! | TTATTTTCTTTAGAGATTGC+TGG | - | chr4_4:26694672-26694691 | None:intergenic | 25.0% |
| ! | GCCAAACAAAAAGTTAAAAA+TGG | - | chr4_4:26694715-26694734 | None:intergenic | 25.0% |
| ! | ACATAAATGCATACTACATA+TGG | - | chr4_4:26694748-26694767 | None:intergenic | 25.0% |
| ! | TGTAGTATGCATTTATGTTA+TGG | + | chr4_4:26694750-26694769 | Msa0676270:intron | 25.0% |
| ! | TATTATATTTGGCCAACTTT+AGG | - | chr4_4:26694903-26694922 | None:intergenic | 25.0% |
| !! | AAGATATTTAAGATGTTGGA+TGG | + | chr4_4:26695111-26695130 | Msa0676270:intron | 25.0% |
| !!! | CAATTTCTCTTTGAAATTCT+AGG | - | chr4_4:26695457-26695476 | None:intergenic | 25.0% |
| ! | ATAGAGAAAATTGTAAAGTG+AGG | + | chr4_4:26695480-26695499 | Msa0676270:CDS | 25.0% |
| ! | AGAGAAATATTCACTTGAAA+AGG | + | chr4_4:26695514-26695533 | Msa0676270:CDS | 25.0% |
| !!! | TGTTTTGAAAAATTCGGTTT+TGG | + | chr4_4:26695565-26695584 | Msa0676270:CDS | 25.0% |
| ! | GGTAATAATCTATGTATACA+AGG | + | chr4_4:26695632-26695651 | Msa0676270:intron | 25.0% |
| !! | ATGTTAATCCTTATTTGGTT+TGG | - | chr4_4:26695746-26695765 | None:intergenic | 25.0% |
| !!! | TAATTCATAGTTCTGAAGTA+TGG | + | chr4_4:26695976-26695995 | Msa0676270:three_prime_UTR | 25.0% |
| ATTGAATCGAAGAGAAGAAT+AGG | - | chr4_4:26692850-26692869 | None:intergenic | 30.0% | |
| AGATTGAAGAATGAATGAAG+AGG | - | chr4_4:26692880-26692899 | None:intergenic | 30.0% | |
| ! | AGCAATATTAGATTAGTTCG+AGG | + | chr4_4:26693189-26693208 | Msa0676270:intron | 30.0% |
| ! | TAGAAGTTTTGCTGCTATAA+AGG | - | chr4_4:26693298-26693317 | None:intergenic | 30.0% |
| !!! | TTGCTTACTTTTTAATAGCG+TGG | + | chr4_4:26693563-26693582 | Msa0676270:intron | 30.0% |
| ! | TTGCTTGAAAACATGGTTTT+TGG | + | chr4_4:26693884-26693903 | Msa0676270:intron | 30.0% |
| AGAACTTATGCAATTTGACT+TGG | - | chr4_4:26693920-26693939 | None:intergenic | 30.0% | |
| GAAAATCAAAAACAAAGTGG+GGG | - | chr4_4:26693988-26694007 | None:intergenic | 30.0% | |
| ATATATTACTGTTGGACTGT+TGG | - | chr4_4:26694040-26694059 | None:intergenic | 30.0% | |
| TACTGCACATATATTACTGT+TGG | - | chr4_4:26694048-26694067 | None:intergenic | 30.0% | |
| TAAAAGCTTGTGTGTCTAAT+AGG | + | chr4_4:26694293-26694312 | Msa0676270:intron | 30.0% | |
| AGTAGTGATTAATCTTTGCA+AGG | - | chr4_4:26694322-26694341 | None:intergenic | 30.0% | |
| TGTGTTGTCTTAAAAACAAG+AGG | + | chr4_4:26694527-26694546 | Msa0676270:CDS | 30.0% | |
| GTGTTGTCTTAAAAACAAGA+GGG | + | chr4_4:26694528-26694547 | Msa0676270:CDS | 30.0% | |
| !!! | CAACTGCTGGAATTATTTTT+TGG | + | chr4_4:26694643-26694662 | Msa0676270:intron | 30.0% |
| AAGATGAAAAAAACTGTACC+TGG | + | chr4_4:26694785-26694804 | Msa0676270:intron | 30.0% | |
| AGATGAAAAAAACTGTACCT+GGG | + | chr4_4:26694786-26694805 | Msa0676270:intron | 30.0% | |
| TACTATTTATCAATAGTGCG+AGG | + | chr4_4:26694863-26694882 | Msa0676270:intron | 30.0% | |
| AATGGTAGCATATAAGATGT+TGG | + | chr4_4:26695026-26695045 | Msa0676270:intron | 30.0% | |
| ! | ATATTTAAGATGTTGGATGG+AGG | + | chr4_4:26695114-26695133 | Msa0676270:intron | 30.0% |
| ! | TATTTAAGATGTTGGATGGA+GGG | + | chr4_4:26695115-26695134 | Msa0676270:intron | 30.0% |
| ! | ATGTCTCATTGTTTCTCATA+TGG | + | chr4_4:26695159-26695178 | Msa0676270:intron | 30.0% |
| AAAAGGAAACAGTGTATGTT+AGG | + | chr4_4:26695275-26695294 | Msa0676270:intron | 30.0% | |
| AATCAATCGGTCATCAAATT+AGG | - | chr4_4:26695400-26695419 | None:intergenic | 30.0% | |
| TGAAAAGGAAATTCAACTCT+TGG | + | chr4_4:26695529-26695548 | Msa0676270:CDS | 30.0% | |
| GATCTTCATAATTCAAACTC+AGG | + | chr4_4:26695611-26695630 | Msa0676270:CDS | 30.0% | |
| ATCTATGTATACAAGGAAGT+AGG | + | chr4_4:26695639-26695658 | Msa0676270:intron | 30.0% | |
| CATAGAAGTAATAACTAGCA+TGG | - | chr4_4:26695669-26695688 | None:intergenic | 30.0% | |
| TTATTGCACCAAACCAAATA+AGG | + | chr4_4:26695735-26695754 | Msa0676270:intron | 30.0% | |
| ! | ACTACAATGTTTTCAGCAAT+TGG | + | chr4_4:26695909-26695928 | Msa0676270:CDS | 30.0% |
| ! | CTACAATGTTTTCAGCAATT+GGG | + | chr4_4:26695910-26695929 | Msa0676270:CDS | 30.0% |
| TTTGTCAACTTTGCCAAATT+TGG | + | chr4_4:26695999-26696018 | Msa0676270:three_prime_UTR | 30.0% | |
| TTCTGATGAAGTAGTAAGAA+TGG | + | chr4_4:26696085-26696104 | Msa0676270:three_prime_UTR | 30.0% | |
| GTAACAGAACAACACAACAA+TGG | + | chr4_4:26692765-26692784 | Msa0676270:exon | 35.0% | |
| AACACAACAATGGAAGATTC+AGG | + | chr4_4:26692775-26692794 | Msa0676270:exon | 35.0% | |
| ! | GGAGAATCATTTTGCAACTA+AGG | + | chr4_4:26693013-26693032 | Msa0676270:CDS | 35.0% |
| ACTAAGGAAGCTGAATTGAT+CGG | + | chr4_4:26693029-26693048 | Msa0676270:CDS | 35.0% | |
| !! | AGCTTTTGTTTAAGCATGAC+AGG | + | chr4_4:26693707-26693726 | Msa0676270:intron | 35.0% |
| !! | GCTTTTGTTTAAGCATGACA+GGG | + | chr4_4:26693708-26693727 | Msa0676270:intron | 35.0% |
| !! | CTTTTGTTTAAGCATGACAG+GGG | + | chr4_4:26693709-26693728 | Msa0676270:intron | 35.0% |
| !! | GTTTTCAAGCAATTCTACGT+GGG | - | chr4_4:26693876-26693895 | None:intergenic | 35.0% |
| !! | TGTTTTCAAGCAATTCTACG+TGG | - | chr4_4:26693877-26693896 | None:intergenic | 35.0% |
| CGTAGAATTGCTTGAAAACA+TGG | + | chr4_4:26693877-26693896 | Msa0676270:intron | 35.0% | |
| TGCATAAGTTCTTCTTTCTC+AGG | + | chr4_4:26693928-26693947 | Msa0676270:intron | 35.0% | |
| GCATAAGTTCTTCTTTCTCA+GGG | + | chr4_4:26693929-26693948 | Msa0676270:intron | 35.0% | |
| TGAAGAACCATGAATAGCAA+GGG | - | chr4_4:26694017-26694036 | None:intergenic | 35.0% | |
| GACAAATAACCAACTTGGTT+TGG | + | chr4_4:26694215-26694234 | Msa0676270:intron | 35.0% | |
| ! | TCAGATTTTCCAAACCAAGT+TGG | - | chr4_4:26694227-26694246 | None:intergenic | 35.0% |
| ATCAGCATATGGAGAAAACT+TGG | + | chr4_4:26694269-26694288 | Msa0676270:intron | 35.0% | |
| ! | TCCATATTATAGCTGGTTTC+AGG | + | chr4_4:26694476-26694495 | Msa0676270:intron | 35.0% |
| ! | CCATATTATAGCTGGTTTCA+GGG | + | chr4_4:26694477-26694496 | Msa0676270:intron | 35.0% |
| TAAAAACAAGAGGGACGATA+TGG | + | chr4_4:26694537-26694556 | Msa0676270:CDS | 35.0% | |
| CAAGTTAAATTTGCAACTGC+TGG | + | chr4_4:26694630-26694649 | Msa0676270:intron | 35.0% | |
| CTGCTTGGAAACAAATCAAT+CGG | - | chr4_4:26695413-26695432 | None:intergenic | 35.0% | |
| !! | GATTGATTTGTTTCCAAGCA+GGG | + | chr4_4:26695412-26695431 | Msa0676270:intron | 35.0% |
| TTGTAAAGTGAGGACTTTGT+TGG | + | chr4_4:26695490-26695509 | Msa0676270:CDS | 35.0% | |
| CTCTCACATTTCATCTCTCA+AGG | + | chr4_4:26692807-26692826 | Msa0676270:CDS | 40.0% | |
| GTTGGATTTGTAACTGTCAC+TGG | + | chr4_4:26693080-26693099 | Msa0676270:CDS | 40.0% | |
| ! | TGTTAGTGTTGTGTTGGTGT+TGG | - | chr4_4:26693333-26693352 | None:intergenic | 40.0% |
| TGTCAGTGTTAGTGTTGTGT+TGG | - | chr4_4:26693339-26693358 | None:intergenic | 40.0% | |
| AAGTTCTTCTTTCTCAGGGA+CGG | + | chr4_4:26693933-26693952 | Msa0676270:intron | 40.0% | |
| GTGAAGAACCATGAATAGCA+AGG | - | chr4_4:26694018-26694037 | None:intergenic | 40.0% | |
| CCCTGAAACCAGCTATAATA+TGG | - | chr4_4:26694480-26694499 | None:intergenic | 40.0% | |
| ! | ATCAGTGAGTACTTTGGAGA+AGG | + | chr4_4:26694501-26694520 | Msa0676270:CDS | 40.0% |
| GGACGATATGGTTAACAGAA+TGG | + | chr4_4:26694549-26694568 | Msa0676270:CDS | 40.0% | |
| TCACATGTGATTAGGTCGTA+TGG | + | chr4_4:26694812-26694831 | Msa0676270:intron | 40.0% | |
| CACATGTGATTAGGTCGTAT+GGG | + | chr4_4:26694813-26694832 | Msa0676270:intron | 40.0% | |
| AGCTCCAAAGAACCTAAAGT+TGG | + | chr4_4:26694888-26694907 | Msa0676270:intron | 40.0% | |
| ! | TTGGCCAACTTTAGGTTCTT+TGG | - | chr4_4:26694895-26694914 | None:intergenic | 40.0% |
| !! | CGATTGATTTGTTTCCAAGC+AGG | + | chr4_4:26695411-26695430 | Msa0676270:intron | 40.0% |
| !! | TTCGGTTTTGGCATTTGTAG+AGG | + | chr4_4:26695577-26695596 | Msa0676270:CDS | 40.0% |
| TCTCAAGGAAATGCTCGATC+AGG | + | chr4_4:26692822-26692841 | Msa0676270:CDS | 45.0% | |
| CATCGTCAAATGCGAAGAGA+TGG | + | chr4_4:26692992-26693011 | Msa0676270:CDS | 45.0% | |
| GCTGAATTGATCGGAATCTG+TGG | + | chr4_4:26693038-26693057 | Msa0676270:CDS | 45.0% | |
| GTTCTGCAGTTTGACACTGT+TGG | + | chr4_4:26693062-26693081 | Msa0676270:CDS | 45.0% | |
| !! | CTTGGTACCCTTGCTATTCA+TGG | + | chr4_4:26694007-26694026 | Msa0676270:intron | 45.0% |
| CAGGGAATCAGTGAGTACTT+TGG | + | chr4_4:26694495-26694514 | Msa0676270:CDS | 45.0% | |
| CTAATCACATGTGAATGCCC+AGG | - | chr4_4:26694806-26694825 | None:intergenic | 45.0% | |
| CTGGGCATTCACATGTGATT+AGG | + | chr4_4:26694804-26694823 | Msa0676270:intron | 45.0% | |
| TGTGATTAGGTCGTATGGGA+TGG | + | chr4_4:26694817-26694836 | Msa0676270:intron | 45.0% | |
| GTGATTAGGTCGTATGGGAT+GGG | + | chr4_4:26694818-26694837 | Msa0676270:intron | 45.0% | |
| TTAAGATGTTGGATGGAGGG+AGG | + | chr4_4:26695118-26695137 | Msa0676270:intron | 45.0% | |
| !!! | TGGATGGAGGGAGGTATTTT+TGG | + | chr4_4:26695127-26695146 | Msa0676270:intron | 45.0% |
| GCAGTAAATTCTTCCCTGCT+TGG | - | chr4_4:26695428-26695447 | None:intergenic | 45.0% | |
| ! | GGGAAGTGCATAGAAAGGTT+AGG | - | chr4_4:26695801-26695820 | None:intergenic | 45.0% |
| ! | GTTTGGGGAAGTGCATAGAA+AGG | - | chr4_4:26695806-26695825 | None:intergenic | 45.0% |
| AGCTTCTAATGCTGCAGTAG+GGG | - | chr4_4:26695829-26695848 | None:intergenic | 45.0% | |
| CAGCTTCTAATGCTGCAGTA+GGG | - | chr4_4:26695830-26695849 | None:intergenic | 45.0% | |
| TCAGCTTCTAATGCTGCAGT+AGG | - | chr4_4:26695831-26695850 | None:intergenic | 45.0% | |
| TGAGATCCAGAGCAAGAACT+GGG | + | chr4_4:26695848-26695867 | Msa0676270:CDS | 45.0% | |
| CTCTTCGCATTTGACGATGC+TGG | - | chr4_4:26692991-26693010 | None:intergenic | 50.0% | |
| AATGCTGCAGTAGGGGGTTT+GGG | - | chr4_4:26695822-26695841 | None:intergenic | 50.0% | |
| TAATGCTGCAGTAGGGGGTT+TGG | - | chr4_4:26695823-26695842 | None:intergenic | 50.0% | |
| GCTTCTAATGCTGCAGTAGG+GGG | - | chr4_4:26695828-26695847 | None:intergenic | 50.0% | |
| CTGAGATCCAGAGCAAGAAC+TGG | + | chr4_4:26695847-26695866 | Msa0676270:CDS | 50.0% | |
| CATTCTCCCAGTTCTTGCTC+TGG | - | chr4_4:26695857-26695876 | None:intergenic | 50.0% | |
| ATGCTGCAGTAGGGGGTTTG+GGG | - | chr4_4:26695821-26695840 | None:intergenic | 55.0% | |
| TCTCAGGGACGGATGCACGT+CGG | + | chr4_4:26693944-26693963 | Msa0676270:intron | 60.0% | |
| ATGCACGTCGGCACTTGTGC+AGG | + | chr4_4:26693956-26693975 | Msa0676270:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 26692754 | 26696121 | 26692754 | ID=Msa0676270;Name=Msa0676270 |
| chr4_4 | mRNA | 26692754 | 26696121 | 26692754 | ID=Msa0676270-mRNA-1;Parent=Msa0676270;Name=Msa0676270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=30|1|1|1|1|1|5|168|210 |
| chr4_4 | exon | 26692754 | 26692843 | 26692754 | ID=Msa0676270-mRNA-1:exon:7100;Parent=Msa0676270-mRNA-1 |
| chr4_4 | exon | 26692939 | 26693101 | 26692939 | ID=Msa0676270-mRNA-1:exon:7101;Parent=Msa0676270-mRNA-1 |
| chr4_4 | exon | 26694488 | 26694581 | 26694488 | ID=Msa0676270-mRNA-1:exon:7102;Parent=Msa0676270-mRNA-1 |
| chr4_4 | exon | 26695433 | 26695632 | 26695433 | ID=Msa0676270-mRNA-1:exon:7103;Parent=Msa0676270-mRNA-1 |
| chr4_4 | exon | 26695838 | 26696121 | 26695838 | ID=Msa0676270-mRNA-1:exon:7104;Parent=Msa0676270-mRNA-1 |
| chr4_4 | five_prime_UTR | 26692754 | 26692783 | 26692754 | ID=Msa0676270-mRNA-1:five_prime_utr;Parent=Msa0676270-mRNA-1 |
| chr4_4 | CDS | 26692784 | 26692843 | 26692784 | ID=Msa0676270-mRNA-1:cds;Parent=Msa0676270-mRNA-1 |
| chr4_4 | CDS | 26692939 | 26693101 | 26692939 | ID=Msa0676270-mRNA-1:cds;Parent=Msa0676270-mRNA-1 |
| chr4_4 | CDS | 26694488 | 26694581 | 26694488 | ID=Msa0676270-mRNA-1:cds;Parent=Msa0676270-mRNA-1 |
| chr4_4 | CDS | 26695433 | 26695632 | 26695433 | ID=Msa0676270-mRNA-1:cds;Parent=Msa0676270-mRNA-1 |
| chr4_4 | CDS | 26695838 | 26695953 | 26695838 | ID=Msa0676270-mRNA-1:cds;Parent=Msa0676270-mRNA-1 |
| chr4_4 | three_prime_UTR | 26695954 | 26696121 | 26695954 | ID=Msa0676270-mRNA-1:three_prime_utr;Parent=Msa0676270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
