AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548920 MtrunA17_Chr4g0019771 96.190 210 8 0 1 210 1 210 4.40e-146 405
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548920 AT1G61415.1 50.617 162 77 1 1 162 1 159 2.10e-45 149
Msa0548920 AT1G61415.2 46.897 145 74 1 18 162 1 142 1.34e-35 123
Msa0548920 AT1G61450.1 49.515 103 52 0 1 103 1 103 2.64e-26 98.6

Find 31 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAATTAATTACCAAATT+TGG 0.132371 4_1:-43465129 None:intergenic
TCCATATTATAGCTGGTTTC+AGG 0.147934 4_1:+43463583 Msa0548920:intron
TTTGTCAACTTTGCCAAATT+TGG 0.218122 4_1:+43465116 Msa0548920:three_prime_UTR
TGAAAATGAAATTCAACTTT+TGG 0.242525 4_1:+43464683 Msa0548920:CDS
CAATTTCTCTTTGAAATTCT+AGG 0.264996 4_1:-43464608 None:intergenic
TAATTCATAGTTCTGAAGTA+TGG 0.316488 4_1:+43465093 Msa0548920:three_prime_UTR
CTCTTCGCATTTGACGATGC+TGG 0.383965 4_1:-43460327 None:intergenic
CTGAGATCCAGAGCAAGAAC+TGG 0.388299 4_1:+43464964 Msa0548920:CDS
CATTCTCCCAGTTCTTGCTC+TGG 0.401003 4_1:-43464971 None:intergenic
AGAAATCGAAGCTCATATTC+AGG 0.409384 4_1:+43460286 Msa0548920:CDS
CCATATTATAGCTGGTTTCA+GGG 0.419672 4_1:+43463584 Msa0548920:intron
AATTTGGTAATTAATTAAGA+TGG 0.456259 4_1:+43465132 Msa0548920:three_prime_UTR
TTGTAAAGTGAGGACTTTGT+TGG 0.483498 4_1:+43464644 Msa0548920:CDS
CAGGGAATCAGTGAGTACTT+TGG 0.487807 4_1:+43463602 Msa0548920:CDS
CTCTCACATTTCATCTCTCA+AGG 0.488977 4_1:+43460148 Msa0548920:CDS
TCTCAAGGAAATGCTCGATC+AGG 0.500609 4_1:+43460163 Msa0548920:CDS
AACACAACAATGGAAGATTC+AGG 0.502293 4_1:+43460116 Msa0548920:exon
TTCTGATGAAGTAGTAAGAA+TGG 0.507235 4_1:+43465217 Msa0548920:three_prime_UTR
GGACGATATGGTTAACAGAA+TGG 0.534903 4_1:+43463656 Msa0548920:CDS
GTTGGATTTGTAACTGTCGC+TGG 0.536155 4_1:+43460419 Msa0548920:CDS
CATCGTCAAATGCGAAGAGA+TGG 0.541364 4_1:+43460331 Msa0548920:CDS
GATCTTCATAATTCAAACTC+AGG 0.543274 4_1:+43464765 Msa0548920:CDS
GTTCTGCAGTTCGACACTGT+TGG 0.572283 4_1:+43460401 Msa0548920:CDS
ATCAGTGAGTACTTTGGAGA+AGG 0.572875 4_1:+43463608 Msa0548920:CDS
ACTAAGGAAGCTGAATTGAT+CGG 0.587240 4_1:+43460368 Msa0548920:CDS
TGAGATCCAGAGCAAGAACT+GGG 0.592261 4_1:+43464965 Msa0548920:CDS
GCTGAATTGATCGGAATCTG+TGG 0.601646 4_1:+43460377 Msa0548920:CDS
ATAGAGAAAATTGTAAAGTG+AGG 0.634744 4_1:+43464634 Msa0548920:CDS
AGCTCATATTCAGGTCACAC+GGG 0.635748 4_1:+43460295 Msa0548920:CDS
AAGCTCATATTCAGGTCACA+CGG 0.669931 4_1:+43460294 Msa0548920:CDS
GTAACAGAACAACACAACAA+TGG 0.713754 4_1:+43460106 Msa0548920:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTAAATCAGAAATT+TGG - chr4_1:43460590-43460609 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAATGGT+TGG + chr4_1:43461016-43461035 Msa0548920:intron 10.0%
!!! TTTTTTTTTTTTTAATGGTT+GGG + chr4_1:43461017-43461036 Msa0548920:intron 10.0%
!! ATCAATAAATATATTAAAGA+AGG - chr4_1:43463198-43463217 None:intergenic 10.0%
!! TTATTTAACAATTAATTGTT+CGG + chr4_1:43463512-43463531 Msa0548920:intron 10.0%
!! TATATATTAGTAGAAAAATA+TGG - chr4_1:43464109-43464128 None:intergenic 10.0%
!! TTCATTATTATTGATCAATT+AGG + chr4_1:43460256-43460275 Msa0548920:intron 15.0%
!! TAGATATTATCTAATTGAAA+CGG + chr4_1:43460819-43460838 Msa0548920:intron 15.0%
!! CATTAAAAAAAAAAAAAACC+TGG - chr4_1:43461014-43461033 None:intergenic 15.0%
!!! CAGGTTTTTTTTTTTTTTAA+TGG + chr4_1:43461012-43461031 Msa0548920:intron 15.0%
!!! TGACTTTAAAAAAATGTAAT+TGG + chr4_1:43461585-43461604 Msa0548920:intron 15.0%
!!! ACTTTAATCTTTTTTATATC+TGG + chr4_1:43463253-43463272 Msa0548920:intron 15.0%
!! TGAAGAAATATAAATATAAC+AGG - chr4_1:43463298-43463317 None:intergenic 15.0%
!! TAAAAACTAAAAAGAATTCA+CGG - chr4_1:43463457-43463476 None:intergenic 15.0%
!! AGTACTATCATTATTATATT+TGG - chr4_1:43464023-43464042 None:intergenic 15.0%
!! TACTAATATATAAAGACAAA+TGG + chr4_1:43464117-43464136 Msa0548920:intron 15.0%
!!! ATATATTTACGTTTGTTTTA+TGG - chr4_1:43464359-43464378 None:intergenic 15.0%
!!! TTTTTCTATTCAAATAGAAA+AGG + chr4_1:43464412-43464431 Msa0548920:intron 15.0%
!! ATTGAAATGATACATAATTA+AGG - chr4_1:43464524-43464543 None:intergenic 15.0%
!!! ATTAACTTTTGTTTAAAGAA+AGG - chr4_1:43465077-43465096 None:intergenic 15.0%
!! TCTTAATTAATTACCAAATT+TGG - chr4_1:43465132-43465151 None:intergenic 15.0%
!!! AATTTGGTAATTAATTAAGA+TGG + chr4_1:43465132-43465151 Msa0548920:three_prime_UTR 15.0%
!! TTGCTTATTTATAAATAGCT+TGG + chr4_1:43460883-43460902 Msa0548920:intron 20.0%
!!! TTGTTTTTCTCAAAAAAAAG+AGG - chr4_1:43461154-43461173 None:intergenic 20.0%
!! TGCTATTAATTCTCATAAAA+GGG - chr4_1:43461178-43461197 None:intergenic 20.0%
!! ATGCTATTAATTCTCATAAA+AGG - chr4_1:43461179-43461198 None:intergenic 20.0%
!!! ATAGTTATTAAGTTTTATCC+CGG + chr4_1:43461279-43461298 Msa0548920:intron 20.0%
!!! AGCGTTGTAATTTTTTTTTT+TGG + chr4_1:43461329-43461348 Msa0548920:intron 20.0%
!!! AAATAGTATTTGCAACTTTT+TGG + chr4_1:43461610-43461629 Msa0548920:intron 20.0%
!! AAATTTGGATTGTTATATCA+AGG + chr4_1:43461702-43461721 Msa0548920:intron 20.0%
!! TGTATATCTTATGTAGAAAT+AGG + chr4_1:43462136-43462155 Msa0548920:intron 20.0%
!!! AAATAGTATTTGCAACTTTT+TGG + chr4_1:43461610-43461629 Msa0548920:intron 20.0%
!! AAATTTGGATTGTTATATCA+AGG + chr4_1:43461702-43461721 Msa0548920:intron 20.0%
!! AAGAAAATCAAAAACAAAGT+GGG - chr4_1:43462725-43462744 None:intergenic 20.0%
!!! ATATTACCGGTAATTTTTTT+TGG - chr4_1:43462857-43462876 None:intergenic 20.0%
!! TGTATATCTTATGTAGAAAT+AGG + chr4_1:43462136-43462155 Msa0548920:intron 20.0%
!! AATGGACATTAAATTAACAT+AGG + chr4_1:43463146-43463165 Msa0548920:intron 20.0%
!! AATATATTAAAGAAGGAAAC+AGG - chr4_1:43463191-43463210 None:intergenic 20.0%
!! AAAGATTAAAGTAAAGCATA+TGG - chr4_1:43463245-43463264 None:intergenic 20.0%
!!! TTAAATTTGAAATCAGCATA+TGG + chr4_1:43463365-43463384 Msa0548920:intron 20.0%
!!! TTTTTATACTGTTTTGCTTA+TGG + chr4_1:43463541-43463560 Msa0548920:intron 20.0%
!!! TTTTATACTGTTTTGCTTAT+GGG + chr4_1:43463542-43463561 Msa0548920:intron 20.0%
!!! TCCATTTTTAACTTTTTGTT+TGG + chr4_1:43463818-43463837 Msa0548920:intron 20.0%
!! ATAAATTCATATATCTGAGT+TGG - chr4_1:43464473-43464492 None:intergenic 20.0%
!!! TGAAAATGAAATTCAACTTT+TGG + chr4_1:43464683-43464702 Msa0548920:CDS 20.0%
!!! GAATTGTGTTTTGAAAAATT+CGG + chr4_1:43464713-43464732 Msa0548920:CDS 20.0%
!! TATACATGTTAATCCTTATT+TGG - chr4_1:43464868-43464887 None:intergenic 20.0%
! ATTATCTAATTGAAACGGAA+TGG + chr4_1:43460824-43460843 Msa0548920:intron 25.0%
! TGTTAAACCAACAATTTGAT+CGG + chr4_1:43460852-43460871 Msa0548920:intron 25.0%
!!! TTTTTTTTAATGGTTGGGTA+CGG + chr4_1:43461022-43461041 Msa0548920:intron 25.0%
! AAATTGAAAAACTAAAGTCC+GGG - chr4_1:43461300-43461319 None:intergenic 25.0%
! CAAATTGAAAAACTAAAGTC+CGG - chr4_1:43461301-43461320 None:intergenic 25.0%
!!! TTTTTCAAAAAACAAGGGTA+CGG - chr4_1:43461442-43461461 None:intergenic 25.0%
!!! TTGCATGAAAATTTGGTTTT+TGG + chr4_1:43461827-43461846 Msa0548920:intron 25.0%
! AAGAAAACCAAAAACAAAGT+GGG - chr4_1:43461933-43461952 None:intergenic 25.0%
! TTTGATAAAGGAAATCACTT+AGG - chr4_1:43462074-43462093 None:intergenic 25.0%
! TAAGTGATTTCCTTTATCAA+AGG + chr4_1:43462073-43462092 Msa0548920:intron 25.0%
! ATATACATTCTCTACTGTAA+CGG - chr4_1:43462123-43462142 None:intergenic 25.0%
! CTTCATAGATATTATCTGAA+TGG + chr4_1:43462192-43462211 Msa0548920:intron 25.0%
! TAGATATTATCTGAATGGAA+CGG + chr4_1:43462197-43462216 Msa0548920:intron 25.0%
! TGTTAAACCAACAATTTGAT+CGG + chr4_1:43460852-43460871 Msa0548920:intron 25.0%
!! TCCTTTTGTGTTAATACATT+AGG + chr4_1:43462276-43462295 Msa0548920:intron 25.0%
! ACCTAATGTATTAACACAAA+AGG - chr4_1:43462280-43462299 None:intergenic 25.0%
!!! TTGCTTATTTTTAAATAGCG+CGG + chr4_1:43462308-43462327 Msa0548920:intron 25.0%
!!! ACAGGAGTTTTATAGAAAAA+AGG + chr4_1:43462460-43462479 Msa0548920:intron 25.0%
! AAAGGTTGTTTACTGAAATT+TGG + chr4_1:43462478-43462497 Msa0548920:intron 25.0%
! AATTATTCTCTGTAATATCG+TGG + chr4_1:43462555-43462574 Msa0548920:intron 25.0%
! AGAAAATCAAAAACAAAGTG+GGG - chr4_1:43462724-43462743 None:intergenic 25.0%
! CAAGAAAATCAAAAACAAAG+TGG - chr4_1:43462726-43462745 None:intergenic 25.0%
!!! CACTTTGTTTTTGATTTTCT+TGG + chr4_1:43462724-43462743 Msa0548920:intron 25.0%
! CTTGTACCAAAAAAAATTAC+CGG + chr4_1:43462848-43462867 Msa0548920:intron 25.0%
! TAAGTGATTTCCTTTATGAA+AGG + chr4_1:43462907-43462926 Msa0548920:intron 25.0%
! AAATAGGAGAACACAAAAAA+TGG + chr4_1:43462986-43463005 Msa0548920:intron 25.0%
! GACATTAAATTAACATAGGA+AGG + chr4_1:43463150-43463169 Msa0548920:intron 25.0%
! AAAGTAAAGCATATGGTTAT+TGG - chr4_1:43463238-43463257 None:intergenic 25.0%
!!! ATTTTGACAAATAACCAACT+TGG + chr4_1:43463320-43463339 Msa0548920:intron 25.0%
!!! TTTTTTCTCCATATTATAGC+TGG + chr4_1:43463576-43463595 Msa0548920:intron 25.0%
! TTAACAGAATGGATGAAAAA+CGG + chr4_1:43463667-43463686 Msa0548920:CDS 25.0%
!!! AACTGCTGGAATTATTTTTT+GGG + chr4_1:43463751-43463770 Msa0548920:intron 25.0%
!!! TTATTTTCTTTAGAGATTGC+TGG - chr4_1:43463779-43463798 None:intergenic 25.0%
! GCCAAACAAAAAGTTAAAAA+TGG - chr4_1:43463822-43463841 None:intergenic 25.0%
! ACATAAATGCATACTACATA+TGG - chr4_1:43463855-43463874 None:intergenic 25.0%
! TGTAGTATGCATTTATGTTA+TGG + chr4_1:43463857-43463876 Msa0548920:intron 25.0%
! TATTATATTTGGCCAACTTT+AGG - chr4_1:43464012-43464031 None:intergenic 25.0%
! TCAAATGTCTCACATAATAT+TGG + chr4_1:43464264-43464283 Msa0548920:intron 25.0%
! AATCAATTGGTCATCAAATT+AGG - chr4_1:43464554-43464573 None:intergenic 25.0%
!!! CAATTTCTCTTTGAAATTCT+AGG - chr4_1:43464611-43464630 None:intergenic 25.0%
! ATAGAGAAAATTGTAAAGTG+AGG + chr4_1:43464634-43464653 Msa0548920:CDS 25.0%
!!! TGTTTTGAAAAATTCGGTTT+TGG + chr4_1:43464719-43464738 Msa0548920:CDS 25.0%
! GGTAATAATCTATGTATACA+AGG + chr4_1:43464786-43464805 Msa0548920:intron 25.0%
!! ATGTTAATCCTTATTTGGTT+TGG - chr4_1:43464863-43464882 None:intergenic 25.0%
!!! TAATTCATAGTTCTGAAGTA+TGG + chr4_1:43465093-43465112 Msa0548920:three_prime_UTR 25.0%
TGATTGAAGATTGAATGAAG+AGG - chr4_1:43460226-43460245 None:intergenic 30.0%
! AGCAATATTAGATTAGTTCG+AGG + chr4_1:43460528-43460547 Msa0548920:intron 30.0%
GAATAAACCGATCAAATTGT+TGG - chr4_1:43460862-43460881 None:intergenic 30.0%
!!! GTACGTTTATCCTCTTTTTT+TGG + chr4_1:43461072-43461091 Msa0548920:intron 30.0%
!!! TCCTCTTTTTTTGGAGAAAA+TGG + chr4_1:43461081-43461100 Msa0548920:intron 30.0%
! TCCATTTTCTCCAAAAAAAG+AGG - chr4_1:43461085-43461104 None:intergenic 30.0%
!! TAGTCATTTTACTGAAGATG+AGG + chr4_1:43461205-43461224 Msa0548920:intron 30.0%
CTTAATAACTATGCATGAGT+AGG - chr4_1:43461271-43461290 None:intergenic 30.0%
!!! CGGACTTTAGTTTTTCAATT+TGG + chr4_1:43461299-43461318 Msa0548920:intron 30.0%
!! TTTTCAAAAAACAAGGGTAC+GGG - chr4_1:43461441-43461460 None:intergenic 30.0%
!! CGGCATTTTTCAAAAAACAA+GGG - chr4_1:43461447-43461466 None:intergenic 30.0%
!! ACGGCATTTTTCAAAAAACA+AGG - chr4_1:43461448-43461467 None:intergenic 30.0%
!! AGTTTTTGTTTAAGCATGAC+AGG + chr4_1:43461651-43461670 Msa0548920:intron 30.0%
!! GTTTTTGTTTAAGCATGACA+GGG + chr4_1:43461652-43461671 Msa0548920:intron 30.0%
! ACAGGGTTTTTATAGAAGAA+AGG + chr4_1:43461669-43461688 Msa0548920:intron 30.0%
AAAGGCTGTTAACTGAAATT+TGG + chr4_1:43461687-43461706 Msa0548920:intron 30.0%
! GGTTTTTGATGTCTTTATGA+TGG + chr4_1:43461723-43461742 Msa0548920:intron 30.0%
AATTATTCTCTGTAGTATCG+TGG + chr4_1:43461764-43461783 Msa0548920:intron 30.0%
! AATTTTCATGCAATTCTCTG+AGG - chr4_1:43461820-43461839 None:intergenic 30.0%
CAGAGAATTGCATGAAAATT+TGG + chr4_1:43461820-43461839 Msa0548920:intron 30.0%
AGAATTTGTGCAATTTGACT+TGG - chr4_1:43461863-43461882 None:intergenic 30.0%
AGAAAACCAAAAACAAAGTG+GGG - chr4_1:43461932-43461951 None:intergenic 30.0%
CAAGAAAACCAAAAACAAAG+TGG - chr4_1:43461934-43461953 None:intergenic 30.0%
!!! CACTTTGTTTTTGGTTTTCT+TGG + chr4_1:43461932-43461951 Msa0548920:intron 30.0%
TACTGCACATATATAACTGT+TGG - chr4_1:43461991-43462010 None:intergenic 30.0%
! CTAAAGGCATGCTATATTAA+AGG + chr4_1:43462039-43462058 Msa0548920:intron 30.0%
! TCTTCTTTTGCCTTTGATAA+AGG - chr4_1:43462086-43462105 None:intergenic 30.0%
TAGGAGAACACACAAAAAAT+AGG + chr4_1:43462155-43462174 Msa0548920:intron 30.0%
GATTTAACCGATCAAATTGT+TGG - chr4_1:43462240-43462259 None:intergenic 30.0%
!! AGTTTTTGTTTAAGCATGAC+AGG + chr4_1:43461651-43461670 Msa0548920:intron 30.0%
! TTGCTTGAAAACATGGTTTT+TGG + chr4_1:43462619-43462638 Msa0548920:intron 30.0%
AGAACTTATGCAATTTGACT+TGG - chr4_1:43462655-43462674 None:intergenic 30.0%
GAAAATCAAAAACAAAGTGG+GGG - chr4_1:43462723-43462742 None:intergenic 30.0%
ATATATAACTGTTGGACTGT+TGG - chr4_1:43461983-43462002 None:intergenic 30.0%
TACTGCACATATATAACTGT+TGG - chr4_1:43461991-43462010 None:intergenic 30.0%
ATAAAGCGTGCATATATTAC+CGG - chr4_1:43462870-43462889 None:intergenic 30.0%
! ATATATGCACGCTTTATTCA+AGG + chr4_1:43462873-43462892 Msa0548920:intron 30.0%
! TCTTCTTTTGCCTTTCATAA+AGG - chr4_1:43462920-43462939 None:intergenic 30.0%
ATATACATTCTCTACTGTGA+CGG - chr4_1:43462957-43462976 None:intergenic 30.0%
TAATGTCCATTAAGAAGTGA+AGG - chr4_1:43463137-43463156 None:intergenic 30.0%
TAAAAGCTTGTGTGTCTAAT+AGG + chr4_1:43463400-43463419 Msa0548920:intron 30.0%
AAAGATTAATCACTGCTATG+CGG + chr4_1:43463431-43463450 Msa0548920:intron 30.0%
TGTGTTGTCTTAAAAACAAG+AGG + chr4_1:43463634-43463653 Msa0548920:CDS 30.0%
GTGTTGTCTTAAAAACAAGA+GGG + chr4_1:43463635-43463654 Msa0548920:CDS 30.0%
!!! CAACTGCTGGAATTATTTTT+TGG + chr4_1:43463750-43463769 Msa0548920:intron 30.0%
AAGATGAAAAAAACTGTACC+TGG + chr4_1:43463894-43463913 Msa0548920:intron 30.0%
AGATGAAAAAAACTGTACCT+GGG + chr4_1:43463895-43463914 Msa0548920:intron 30.0%
TACTATTTATCAATAGTGCG+AGG + chr4_1:43463972-43463991 Msa0548920:intron 30.0%
AATGGTAGCATATAAGATGT+TGG + chr4_1:43464135-43464154 Msa0548920:intron 30.0%
ATGTCTCACATAATATTGGA+TGG + chr4_1:43464268-43464287 Msa0548920:intron 30.0%
! ATGTCTCATTGTTTCTCATA+TGG + chr4_1:43464316-43464335 Msa0548920:intron 30.0%
AAAAGGAAACAGTGTATGTT+AGG + chr4_1:43464429-43464448 Msa0548920:intron 30.0%
!! AATTGATTTGTTTCCAAGCA+GGG + chr4_1:43464566-43464585 Msa0548920:intron 30.0%
GATCTTCATAATTCAAACTC+AGG + chr4_1:43464765-43464784 Msa0548920:CDS 30.0%
ATCTATGTATACAAGGAAGT+AGG + chr4_1:43464793-43464812 Msa0548920:intron 30.0%
TTATTGCACCAAACCAAATA+AGG + chr4_1:43464852-43464871 Msa0548920:intron 30.0%
! ACTACAATGTTTTCAGCATT+TGG + chr4_1:43465026-43465045 Msa0548920:CDS 30.0%
! CTACAATGTTTTCAGCATTT+GGG + chr4_1:43465027-43465046 Msa0548920:CDS 30.0%
TTTGTCAACTTTGCCAAATT+TGG + chr4_1:43465116-43465135 Msa0548920:three_prime_UTR 30.0%
TTCTGATGAAGTAGTAAGAA+TGG + chr4_1:43465217-43465236 Msa0548920:three_prime_UTR 30.0%
GTAACAGAACAACACAACAA+TGG + chr4_1:43460106-43460125 Msa0548920:exon 35.0%
AACACAACAATGGAAGATTC+AGG + chr4_1:43460116-43460135 Msa0548920:exon 35.0%
ATCGAAGAGAAGAGAAGAAT+AGG - chr4_1:43460191-43460210 None:intergenic 35.0%
AGAAATCGAAGCTCATATTC+AGG + chr4_1:43460286-43460305 Msa0548920:CDS 35.0%
! GGAGAATCATTTTGCAACTA+AGG + chr4_1:43460352-43460371 Msa0548920:CDS 35.0%
ACTAAGGAAGCTGAATTGAT+CGG + chr4_1:43460368-43460387 Msa0548920:CDS 35.0%
GTTTCGCTGCTATAAATTGA+AGG - chr4_1:43460632-43460651 None:intergenic 35.0%
ATACCAGACATGACTTCATT+AGG - chr4_1:43460656-43460675 None:intergenic 35.0%
AAAAAAACCTGGTGCTTCAT+GGG - chr4_1:43461003-43461022 None:intergenic 35.0%
AAAAAAAACCTGGTGCTTCA+TGG - chr4_1:43461004-43461023 None:intergenic 35.0%
! CATTTTACTGAAGATGAGGA+AGG + chr4_1:43461209-43461228 Msa0548920:intron 35.0%
AATAGTGATATCGACACAGT+TGG + chr4_1:43461233-43461252 Msa0548920:intron 35.0%
GAAAACCAAAAACAAAGTGG+GGG - chr4_1:43461931-43461950 None:intergenic 35.0%
TGAAGAACCATGAATAGCAA+AGG - chr4_1:43461960-43461979 None:intergenic 35.0%
AGTGTATAGCATCTCACTAA+AGG + chr4_1:43462023-43462042 Msa0548920:intron 35.0%
ATTATCTGAATGGAACGGAA+TGG + chr4_1:43462202-43462221 Msa0548920:intron 35.0%
!! GTTTTCAAGCAATTCTACGT+GGG - chr4_1:43462611-43462630 None:intergenic 35.0%
!! TGTTTTCAAGCAATTCTACG+TGG - chr4_1:43462612-43462631 None:intergenic 35.0%
CGTAGAATTGCTTGAAAACA+TGG + chr4_1:43462612-43462631 Msa0548920:intron 35.0%
TGCATAAGTTCTTCTTTCTC+AGG + chr4_1:43462663-43462682 Msa0548920:intron 35.0%
GCATAAGTTCTTCTTTCTCA+GGG + chr4_1:43462664-43462683 Msa0548920:intron 35.0%
TGAAGAACCATGAATAGCAA+GGG - chr4_1:43461960-43461979 None:intergenic 35.0%
GAAAGAAAAATGACAGATCC+AGG - chr4_1:43463059-43463078 None:intergenic 35.0%
AACAGTCCTTCACTTCTTAA+TGG + chr4_1:43463128-43463147 Msa0548920:intron 35.0%
GACAAATAACCAACTTGGTT+TGG + chr4_1:43463325-43463344 Msa0548920:intron 35.0%
! TCAGATTTTCCAAACCAAGT+TGG - chr4_1:43463337-43463356 None:intergenic 35.0%
ATCAGCATATGGAGAAAACT+TGG + chr4_1:43463376-43463395 Msa0548920:intron 35.0%
TAGCAGTGATTAATCTTTGC+CGG - chr4_1:43463429-43463448 None:intergenic 35.0%
! TCCATATTATAGCTGGTTTC+AGG + chr4_1:43463583-43463602 Msa0548920:intron 35.0%
! CCATATTATAGCTGGTTTCA+GGG + chr4_1:43463584-43463603 Msa0548920:intron 35.0%
TAAAAACAAGAGGGACGATA+TGG + chr4_1:43463644-43463663 Msa0548920:CDS 35.0%
CAAGTTAAATTTGCAACTGC+TGG + chr4_1:43463737-43463756 Msa0548920:intron 35.0%
TCTCACATAATATTGGATGG+AGG + chr4_1:43464271-43464290 Msa0548920:intron 35.0%
CTCACATAATATTGGATGGA+GGG + chr4_1:43464272-43464291 Msa0548920:intron 35.0%
CTGCTTGGAAACAAATCAAT+TGG - chr4_1:43464567-43464586 None:intergenic 35.0%
!! CAATTGATTTGTTTCCAAGC+AGG + chr4_1:43464565-43464584 Msa0548920:intron 35.0%
TTGTAAAGTGAGGACTTTGT+TGG + chr4_1:43464644-43464663 Msa0548920:CDS 35.0%
CTCTCACATTTCATCTCTCA+AGG + chr4_1:43460148-43460167 Msa0548920:CDS 40.0%
AAGCTCATATTCAGGTCACA+CGG + chr4_1:43460294-43460313 Msa0548920:CDS 40.0%
ACTCCTAATGAAGTCATGTC+TGG + chr4_1:43460650-43460669 Msa0548920:intron 40.0%
ATGTGTCAATGTTGTGTCAC+TGG + chr4_1:43460773-43460792 Msa0548920:intron 40.0%
TACGGGTACGTTTAGCAAAA+CGG - chr4_1:43460930-43460949 None:intergenic 40.0%
! TTTTAATGGTTGGGTACGGA+CGG + chr4_1:43461026-43461045 Msa0548920:intron 40.0%
CAAAAAAAAGAGGATGTGCG+TGG - chr4_1:43461144-43461163 None:intergenic 40.0%
!! CTTGGTACCTTTGCTATTCA+TGG + chr4_1:43461950-43461969 Msa0548920:intron 40.0%
CTCTGTAATATCGTGGATCA+TGG + chr4_1:43462562-43462581 Msa0548920:intron 40.0%
AAGTTCTTCTTTCTCAGGGA+CGG + chr4_1:43462668-43462687 Msa0548920:intron 40.0%
GTGAAGAACCATGAATAGCA+AGG - chr4_1:43461961-43461980 None:intergenic 40.0%
!! ATCCAGGAATTTTGAGTAGC+GGG - chr4_1:43463043-43463062 None:intergenic 40.0%
!! GATCCAGGAATTTTGAGTAG+CGG - chr4_1:43463044-43463063 None:intergenic 40.0%
AAGGACTGTTACTGATAGCT+AGG - chr4_1:43463118-43463137 None:intergenic 40.0%
TTGTGTGTCTAATAGGTTCC+CGG + chr4_1:43463407-43463426 Msa0548920:intron 40.0%
AGCAGTGATTAATCTTTGCC+GGG - chr4_1:43463428-43463447 None:intergenic 40.0%
CCCTGAAACCAGCTATAATA+TGG - chr4_1:43463587-43463606 None:intergenic 40.0%
! ATCAGTGAGTACTTTGGAGA+AGG + chr4_1:43463608-43463627 Msa0548920:CDS 40.0%
GGACGATATGGTTAACAGAA+TGG + chr4_1:43463656-43463675 Msa0548920:CDS 40.0%
TCACATGTGATTAGGTCGTA+TGG + chr4_1:43463921-43463940 Msa0548920:intron 40.0%
CACATGTGATTAGGTCGTAT+GGG + chr4_1:43463922-43463941 Msa0548920:intron 40.0%
AGCTCCAAAGAACCTAAAGT+TGG + chr4_1:43463997-43464016 Msa0548920:intron 40.0%
! TTGGCCAACTTTAGGTTCTT+TGG - chr4_1:43464004-43464023 None:intergenic 40.0%
ACATAATATTGGATGGAGGG+AGG + chr4_1:43464275-43464294 Msa0548920:intron 40.0%
!! TTCGGTTTTGGCATTTGTAG+AGG + chr4_1:43464731-43464750 Msa0548920:CDS 40.0%
GGGAATTGCATAGAAAGGTT+AGG - chr4_1:43464918-43464937 None:intergenic 40.0%
GTTTGGGGAATTGCATAGAA+AGG - chr4_1:43464923-43464942 None:intergenic 40.0%
TCTCAAGGAAATGCTCGATC+AGG + chr4_1:43460163-43460182 Msa0548920:CDS 45.0%
AGCTCATATTCAGGTCACAC+GGG + chr4_1:43460295-43460314 Msa0548920:CDS 45.0%
CATCGTCAAATGCGAAGAGA+TGG + chr4_1:43460331-43460350 Msa0548920:CDS 45.0%
GCTGAATTGATCGGAATCTG+TGG + chr4_1:43460377-43460396 Msa0548920:CDS 45.0%
GTTGGATTTGTAACTGTCGC+TGG + chr4_1:43460419-43460438 Msa0548920:CDS 45.0%
TGTCGATGTTGGACACTAGT+AGG - chr4_1:43460685-43460704 None:intergenic 45.0%
! TGTCAGTGTTGTGTCGATGT+TGG - chr4_1:43460696-43460715 None:intergenic 45.0%
TTTGCTAAACGTACCCGTAC+CGG + chr4_1:43460931-43460950 Msa0548920:intron 45.0%
TTTAATGGTTGGGTACGGAC+GGG + chr4_1:43461027-43461046 Msa0548920:intron 45.0%
!! GTACTGCAGTGGTACTGATT+GGG + chr4_1:43461050-43461069 Msa0548920:intron 45.0%
AAATGCCAAGCTGTGTTGCA+CGG - chr4_1:43461516-43461535 None:intergenic 45.0%
!! CTTGGTACCCTTGCTATTCA+TGG + chr4_1:43462742-43462761 Msa0548920:intron 45.0%
CAGGGAATCAGTGAGTACTT+TGG + chr4_1:43463602-43463621 Msa0548920:CDS 45.0%
CTAATCACATGTGAATGCCC+AGG - chr4_1:43463915-43463934 None:intergenic 45.0%
CTGGGCATTCACATGTGATT+AGG + chr4_1:43463913-43463932 Msa0548920:intron 45.0%
TGTGATTAGGTCGTATGGGA+TGG + chr4_1:43463926-43463945 Msa0548920:intron 45.0%
GTGATTAGGTCGTATGGGAT+GGG + chr4_1:43463927-43463946 Msa0548920:intron 45.0%
!!! TGGATGGAGGGAGGTATTTT+TGG + chr4_1:43464284-43464303 Msa0548920:intron 45.0%
GCAGTAAATTCTTCCCTGCT+TGG - chr4_1:43464582-43464601 None:intergenic 45.0%
AGCTTCTAATGCTGCAGTAG+GGG - chr4_1:43464946-43464965 None:intergenic 45.0%
CAGCTTCTAATGCTGCAGTA+GGG - chr4_1:43464947-43464966 None:intergenic 45.0%
TCAGCTTCTAATGCTGCAGT+AGG - chr4_1:43464948-43464967 None:intergenic 45.0%
TGAGATCCAGAGCAAGAACT+GGG + chr4_1:43464965-43464984 Msa0548920:CDS 45.0%
!!! TATTTTTTTCAAATTATTAT+CGG + chr4_1:43460745-43460764 Msa0548920:intron 5.0%
CTCTTCGCATTTGACGATGC+TGG - chr4_1:43460330-43460349 None:intergenic 50.0%
GTTCTGCAGTTCGACACTGT+TGG + chr4_1:43460401-43460420 Msa0548920:CDS 50.0%
!! AGCTTGGCATCTCTGAAGCA+CGG + chr4_1:43460899-43460918 Msa0548920:intron 50.0%
TTGCTAAACGTACCCGTACC+GGG + chr4_1:43460932-43460951 Msa0548920:intron 50.0%
TTAATGGTTGGGTACGGACG+GGG + chr4_1:43461028-43461047 Msa0548920:intron 50.0%
!! GGTACTGCAGTGGTACTGAT+TGG + chr4_1:43461049-43461068 Msa0548920:intron 50.0%
AATGCCAAGCTGTGTTGCAC+GGG - chr4_1:43461515-43461534 None:intergenic 50.0%
!!! TCGTGCCCCCACTTTGTTTT+TGG + chr4_1:43461923-43461942 Msa0548920:intron 50.0%
CTCCCGCTACTCAAAATTCC+TGG + chr4_1:43463038-43463057 Msa0548920:intron 50.0%
AATGCTGCAGTAGGGGGTTT+GGG - chr4_1:43464939-43464958 None:intergenic 50.0%
TAATGCTGCAGTAGGGGGTT+TGG - chr4_1:43464940-43464959 None:intergenic 50.0%
GCTTCTAATGCTGCAGTAGG+GGG - chr4_1:43464945-43464964 None:intergenic 50.0%
CTGAGATCCAGAGCAAGAAC+TGG + chr4_1:43464964-43464983 Msa0548920:CDS 50.0%
CATTCTCCCAGTTCTTGCTC+TGG - chr4_1:43464974-43464993 None:intergenic 50.0%
!! GCTTGGCATCTCTGAAGCAC+GGG + chr4_1:43460900-43460919 Msa0548920:intron 55.0%
TCCCAGTGACTGATGCACGT+TGG + chr4_1:43461887-43461906 Msa0548920:intron 55.0%
GCCAACGTGCATCAGTCACT+GGG - chr4_1:43461891-43461910 None:intergenic 55.0%
TGCCAACGTGCATCAGTCAC+TGG - chr4_1:43461892-43461911 None:intergenic 55.0%
ATGCACGTTGGCACTTGTGC+AGG + chr4_1:43461899-43461918 Msa0548920:intron 55.0%
ATGCTGCAGTAGGGGGTTTG+GGG - chr4_1:43464938-43464957 None:intergenic 55.0%
! GTACGCACCCATGAAGCACC+AGG + chr4_1:43460993-43461012 Msa0548920:intron 60.0%
AAGCTGTGTTGCACGGGTGC+GGG - chr4_1:43461509-43461528 None:intergenic 60.0%
CAAGCTGTGTTGCACGGGTG+CGG - chr4_1:43461510-43461529 None:intergenic 60.0%
TCTCAGGGACGGATGCACGT+CGG + chr4_1:43462679-43462698 Msa0548920:intron 60.0%
ATGCACGTCGGCACTTGTGC+AGG + chr4_1:43462691-43462710 Msa0548920:intron 60.0%
! TACCCGTACCGGGTACTGCG+CGG + chr4_1:43460942-43460961 Msa0548920:intron 65.0%
TACCCGCGCAGTACCCGGTA+CGG - chr4_1:43460948-43460967 None:intergenic 65.0%
ACCAGTACCCGCGCAGTACC+CGG - chr4_1:43460953-43460972 None:intergenic 65.0%
!! GTACGGACGGGGTACTGCAG+TGG + chr4_1:43461039-43461058 Msa0548920:intron 65.0%
GCTGGTGCGGGTACGGGATA+CGG - chr4_1:43461467-43461486 None:intergenic 65.0%
!! TACGGGTGCTGGTGCGGGTA+CGG - chr4_1:43461474-43461493 None:intergenic 65.0%
TGCGGGTACGGTACCCGGTA+CGG - chr4_1:43461492-43461511 None:intergenic 65.0%
GTGTTGCACGGGTGCGGGTA+CGG - chr4_1:43461504-43461523 None:intergenic 65.0%
CGCACCCGTGCAACACAGCT+TGG + chr4_1:43461508-43461527 Msa0548920:intron 65.0%
! ACCCGTACCGGGTACTGCGC+GGG + chr4_1:43460943-43460962 Msa0548920:intron 70.0%
ACCCGCGCAGTACCCGGTAC+GGG - chr4_1:43460947-43460966 None:intergenic 70.0%
! ACCGGGTACTGCGCGGGTAC+TGG + chr4_1:43460949-43460968 Msa0548920:intron 70.0%
!! ACGGGTGCTGGTGCGGGTAC+GGG - chr4_1:43461473-43461492 None:intergenic 70.0%
ACCCGCACCAGCACCCGTAC+CGG + chr4_1:43461475-43461494 Msa0548920:intron 70.0%
!! ACCCGGTACGGGTGCTGGTG+CGG - chr4_1:43461480-43461499 None:intergenic 70.0%
ACGGTACCCGGTACGGGTGC+TGG - chr4_1:43461485-43461504 None:intergenic 70.0%
GCGGGTACGGTACCCGGTAC+GGG - chr4_1:43461491-43461510 None:intergenic 70.0%
ACGGGTGCGGGTACGGTACC+CGG - chr4_1:43461497-43461516 None:intergenic 70.0%
!! CCCGGTACGGGTGCTGGTGC+GGG - chr4_1:43461479-43461498 None:intergenic 75.0%
CCCGCACCAGCACCCGTACC+GGG + chr4_1:43461476-43461495 Msa0548920:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 43460095 43465253 43460095 ID=Msa0548920;Name=Msa0548920
chr4_1 mRNA 43460095 43465253 43460095 ID=Msa0548920-mRNA-1;Parent=Msa0548920;Name=Msa0548920-mRNA-1;_AED=0.09;_eAED=0.09;_QI=30|1|1|1|0.75|0.8|5|183|210
chr4_1 exon 43460095 43460184 43460095 ID=Msa0548920-mRNA-1:exon:11235;Parent=Msa0548920-mRNA-1
chr4_1 exon 43460278 43460440 43460278 ID=Msa0548920-mRNA-1:exon:11236;Parent=Msa0548920-mRNA-1
chr4_1 exon 43463595 43463688 43463595 ID=Msa0548920-mRNA-1:exon:11237;Parent=Msa0548920-mRNA-1
chr4_1 exon 43464587 43464786 43464587 ID=Msa0548920-mRNA-1:exon:11238;Parent=Msa0548920-mRNA-1
chr4_1 exon 43464955 43465253 43464955 ID=Msa0548920-mRNA-1:exon:11239;Parent=Msa0548920-mRNA-1
chr4_1 five_prime_UTR 43460095 43460124 43460095 ID=Msa0548920-mRNA-1:five_prime_utr;Parent=Msa0548920-mRNA-1
chr4_1 CDS 43460125 43460184 43460125 ID=Msa0548920-mRNA-1:cds;Parent=Msa0548920-mRNA-1
chr4_1 CDS 43460278 43460440 43460278 ID=Msa0548920-mRNA-1:cds;Parent=Msa0548920-mRNA-1
chr4_1 CDS 43463595 43463688 43463595 ID=Msa0548920-mRNA-1:cds;Parent=Msa0548920-mRNA-1
chr4_1 CDS 43464587 43464786 43464587 ID=Msa0548920-mRNA-1:cds;Parent=Msa0548920-mRNA-1
chr4_1 CDS 43464955 43465070 43464955 ID=Msa0548920-mRNA-1:cds;Parent=Msa0548920-mRNA-1
chr4_1 three_prime_UTR 43465071 43465253 43465071 ID=Msa0548920-mRNA-1:three_prime_utr;Parent=Msa0548920-mRNA-1
Gene Sequence

>Msa0548920

ATGGAAGATTCAGGAGCGATTCTCTCTCACATTTCATCTCTCAAGGAAATGCTCGATCAGGTCAACGAAGAAATCGAAGCTCATATTCAGGTCACACGGGAGATCGAATCCAGCATCGTCAAATGCGAAGAGATGGAGAATCATTTTGCAACTAAGGAAGCTGAATTGATCGGAATCTGTGGCGTTCTGCAGTTCGACACTGTTGGATTTGTAACTGTCGCTGCTGGTTTCAGGGAATCAGTGAGTACTTTGGAGAAGGAGTTGTGTTGTCTTAAAAACAAGAGGGACGATATGGTTAACAGAATGGATGAAAAACGGGAAGAATTTACTGCACACTGCCTAGAATTTCAAAGAGAAATTGACAATAGAGAAAATTGTAAAGTGAGGACTTTGTTGGCAGAGAAATATTCACTTGAAAATGAAATTCAACTTTTGGATGAGAAGAATTGTGTTTTGAAAAATTCGGTTTTGGCATTTGTAGAGGAAATTCTTGAAGATCTTCATAATTCAAACTCAGCATTAGAAGCTGAGATCCAGAGCAAGAACTGGGAGAATGAGAGATTACTTAAAGATATCAATGAATTGAAGACTACAATGTTTTCAGCATTTGGGAGCAGTGATAATATACTGTAA

Protein sequence

>Msa0548920

MEDSGAILSHISSLKEMLDQVNEEIEAHIQVTREIESSIVKCEEMENHFATKEAELIGICGVLQFDTVGFVTVAAGFRESVSTLEKELCCLKNKRDDMVNRMDEKREEFTAHCLEFQREIDNRENCKVRTLLAEKYSLENEIQLLDEKNCVLKNSVLAFVEEILEDLHNSNSALEAEIQSKNWENERLLKDINELKTTMFSAFGSSDNIL*