Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672480 | XP_013442809.2 | 94.762 | 210 | 11 | 0 | 1 | 210 | 1 | 210 | 2.74e-140 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672480 | A0A396I2U5 | 94.762 | 210 | 11 | 0 | 1 | 210 | 1 | 210 | 1.31e-140 | 400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008840 | Msa0672480 | 0.809087 | 2.250178e-50 | -8.615850e-47 |
| Msa0010490 | Msa0672480 | 0.816452 | 5.490943e-52 | -8.615850e-47 |
| Msa0010500 | Msa0672480 | 0.809328 | 1.997957e-50 | -8.615850e-47 |
| Msa0020390 | Msa0672480 | 0.827769 | 1.302796e-54 | -8.615850e-47 |
| Msa0031520 | Msa0672480 | 0.819983 | 8.720861e-53 | -8.615850e-47 |
| Msa0035130 | Msa0672480 | 0.803239 | 3.833139e-49 | -8.615850e-47 |
| Msa0057750 | Msa0672480 | 0.811006 | 8.685481e-51 | -8.615850e-47 |
| Msa0061500 | Msa0672480 | 0.810523 | 1.104968e-50 | -8.615850e-47 |
| Msa0065010 | Msa0672480 | 0.814625 | 1.400275e-51 | -8.615850e-47 |
| Msa0065650 | Msa0672480 | 0.801684 | 8.016990e-49 | -8.615850e-47 |
| Msa0079230 | Msa0672480 | 0.825437 | 4.689072e-54 | -8.615850e-47 |
| Msa0089820 | Msa0672480 | 0.801645 | 8.165521e-49 | -8.615850e-47 |
| Msa0090550 | Msa0672480 | 0.804744 | 1.864701e-49 | -8.615850e-47 |
| Msa0090570 | Msa0672480 | 0.802283 | 6.037472e-49 | -8.615850e-47 |
| Msa0103070 | Msa0672480 | 0.815319 | 9.825898e-52 | -8.615850e-47 |
| Msa0106710 | Msa0672480 | 0.807190 | 5.706204e-50 | -8.615850e-47 |
| Msa0111080 | Msa0672480 | 0.827598 | 1.432207e-54 | -8.615850e-47 |
| Msa0118540 | Msa0672480 | 0.826355 | 2.838561e-54 | -8.615850e-47 |
| Msa0615680 | Msa0672480 | 0.800090 | 1.696749e-48 | -8.615850e-47 |
| Msa0626850 | Msa0672480 | 0.810364 | 1.195772e-50 | -8.615850e-47 |
| Msa0640940 | Msa0672480 | 0.802300 | 5.989218e-49 | -8.615850e-47 |
| Msa0657870 | Msa0672480 | 0.801657 | 8.119138e-49 | -8.615850e-47 |
| Msa0659210 | Msa0672480 | 0.832188 | 1.090023e-55 | -8.615850e-47 |
| Msa0664970 | Msa0672480 | 0.823433 | 1.388513e-53 | -8.615850e-47 |
| Msa0672450 | Msa0672480 | 0.913781 | 4.131770e-84 | -8.615850e-47 |
| Msa0672480 | Msa0676270 | 0.826911 | 2.091956e-54 | -8.615850e-47 |
| Msa0672480 | Msa0679360 | 0.801561 | 8.498142e-49 | -8.615850e-47 |
| Msa0672480 | Msa0689780 | 0.825057 | 5.768640e-54 | -8.615850e-47 |
| Msa0672480 | Msa0703660 | 0.808913 | 2.451081e-50 | -8.615850e-47 |
| Msa0672480 | Msa0705190 | 0.818769 | 1.648611e-52 | -8.615850e-47 |
| Msa0672480 | Msa0705990 | 0.820571 | 6.393013e-53 | -8.615850e-47 |
| Msa0672480 | Msa0711150 | 0.801953 | 7.060870e-49 | -8.615850e-47 |
| Msa0672480 | Msa0746170 | 0.803329 | 3.672413e-49 | -8.615850e-47 |
| Msa0672480 | Msa0746210 | 0.804506 | 2.090891e-49 | -8.615850e-47 |
| Msa0672480 | Msa0749440 | 0.813319 | 2.718956e-51 | -8.615850e-47 |
| Msa0672480 | Msa0750650 | 0.801732 | 7.837316e-49 | -8.615850e-47 |
| Msa0672480 | Msa0760350 | 0.801696 | 7.970932e-49 | -8.615850e-47 |
| Msa0672480 | Msa0763920 | 0.804792 | 1.821997e-49 | -8.615850e-47 |
| Msa0672480 | Msa0800370 | 0.800787 | 1.223343e-48 | -8.615850e-47 |
| Msa0672480 | Msa0822500 | 0.802316 | 5.945014e-49 | -8.615850e-47 |
| Msa0672480 | Msa0844110 | 0.818638 | 1.766025e-52 | -8.615850e-47 |
| Msa0672480 | Msa0861470 | 0.812625 | 3.859470e-51 | -8.615850e-47 |
| Msa0672480 | Msa0861570 | 0.817876 | 2.626746e-52 | -8.615850e-47 |
| Msa0672480 | Msa0877710 | 0.803067 | 4.160221e-49 | -8.615850e-47 |
| Msa0672480 | Msa0888990 | 0.818742 | 1.672733e-52 | -8.615850e-47 |
| Msa0672480 | Msa0903780 | 0.800741 | 1.250060e-48 | -8.615850e-47 |
| Msa0672480 | Msa0921420 | 0.802860 | 4.590555e-49 | -8.615850e-47 |
| Msa0672480 | Msa0944610 | 0.843670 | 1.214726e-58 | -8.615850e-47 |
| Msa0672480 | Msa0944870 | 0.821590 | 3.724727e-53 | -8.615850e-47 |
| Msa0672480 | Msa0948320 | 0.804313 | 2.293836e-49 | -8.615850e-47 |
| Msa0672480 | Msa0960390 | 0.821940 | 3.090317e-53 | -8.615850e-47 |
| Msa0672480 | Msa0974950 | 0.843160 | 1.661654e-58 | -8.615850e-47 |
| Msa0672480 | Msa0980020 | 0.812625 | 3.859470e-51 | -8.615850e-47 |
| Msa0672480 | Msa0992600 | 0.800962 | 1.126978e-48 | -8.615850e-47 |
| Msa0672480 | Msa0994370 | 0.828060 | 1.108881e-54 | -8.615850e-47 |
| Msa0672480 | Msa1007230 | 0.805863 | 1.086823e-49 | -8.615850e-47 |
| Msa0672480 | Msa1029080 | -0.803537 | 3.324886e-49 | -8.615850e-47 |
| Msa0672480 | Msa1034270 | 0.843236 | 1.586614e-58 | -8.615850e-47 |
| Msa0672480 | Msa1034280 | 0.833717 | 4.541466e-56 | -8.615850e-47 |
| Msa0672480 | Msa1034290 | 0.838374 | 2.986837e-57 | -8.615850e-47 |
| Msa0672480 | Msa1042660 | 0.829693 | 4.463505e-55 | -8.615850e-47 |
| Msa0672480 | Msa1045050 | 0.808047 | 3.751764e-50 | -8.615850e-47 |
| Msa0672480 | Msa1063420 | 0.821702 | 3.508252e-53 | -8.615850e-47 |
| Msa0672480 | Msa1064250 | 0.817101 | 3.926094e-52 | -8.615850e-47 |
| Msa0672480 | Msa1068870 | 0.801083 | 1.064546e-48 | -8.615850e-47 |
| Msa0672480 | Msa1071320 | 0.817091 | 3.947315e-52 | -8.615850e-47 |
| Msa0672480 | Msa1072900 | 0.822148 | 2.765564e-53 | -8.615850e-47 |
| Msa0672480 | Msa1093100 | 0.826840 | 2.175490e-54 | -8.615850e-47 |
| Msa0672480 | Msa1098440 | 0.807046 | 6.119254e-50 | -8.615850e-47 |
| Msa0672480 | Msa1098460 | 0.814234 | 1.708854e-51 | -8.615850e-47 |
| Msa0672480 | Msa1107190 | 0.813838 | 2.089822e-51 | -8.615850e-47 |
| Msa0672480 | Msa1121110 | 0.805083 | 1.584337e-49 | -8.615850e-47 |
| Msa0672480 | Msa1133230 | 0.808057 | 3.734236e-50 | -8.615850e-47 |
| Msa0672480 | Msa1133250 | 0.805041 | 1.616457e-49 | -8.615850e-47 |
| Msa0672480 | Msa1138910 | 0.804248 | 2.366366e-49 | -8.615850e-47 |
| Msa0672480 | Msa1143020 | 0.816333 | 5.837417e-52 | -8.615850e-47 |
| Msa0672480 | Msa1221330 | 0.803573 | 3.267728e-49 | -8.615850e-47 |
| Msa0672480 | Msa1225100 | 0.835617 | 1.512020e-56 | -8.615850e-47 |
| Msa0672480 | Msa1232740 | 0.802119 | 6.525255e-49 | -8.615850e-47 |
| Msa0672480 | Msa1250110 | 0.810669 | 1.027491e-50 | -8.615850e-47 |
| Msa0672480 | Msa1250730 | 0.803086 | 4.123330e-49 | -8.615850e-47 |
| Msa0672480 | Msa1265590 | 0.818918 | 1.525543e-52 | -8.615850e-47 |
| Msa0672480 | Msa1270660 | 0.831668 | 1.464692e-55 | -8.615850e-47 |
| Msa0672480 | Msa1270730 | 0.805876 | 1.080271e-49 | -8.615850e-47 |
| Msa0672480 | Msa1275110 | 0.800551 | 1.366710e-48 | -8.615850e-47 |
| Msa0672480 | Msa1276340 | 0.800061 | 1.719665e-48 | -8.615850e-47 |
| Msa0672480 | Msa1295330 | 0.800196 | 1.614400e-48 | -8.615850e-47 |
| Msa0672480 | Msa1307180 | 0.805471 | 1.313931e-49 | -8.615850e-47 |
| Msa0672480 | Msa1307600 | 0.804486 | 2.110871e-49 | -8.615850e-47 |
| Msa0672480 | Msa1313320 | 0.804121 | 2.514397e-49 | -8.615850e-47 |
| Msa0672480 | Msa1316360 | 0.807049 | 6.111117e-50 | -8.615850e-47 |
| Msa0672480 | Msa1323690 | 0.811983 | 5.329345e-51 | -8.615850e-47 |
| Msa0672480 | Msa1329870 | 0.834439 | 2.994975e-56 | -8.615850e-47 |
| Msa0672480 | Msa1332050 | 0.812306 | 4.530914e-51 | -8.615850e-47 |
| Msa0672480 | Msa1351540 | 0.800865 | 1.179088e-48 | -8.615850e-47 |
| Msa0672480 | Msa1355890 | 0.820281 | 7.452904e-53 | -8.615850e-47 |
| Msa0672480 | Msa1371940 | 0.813030 | 3.146597e-51 | -8.615850e-47 |
| Msa0672480 | Msa1372280 | 0.811141 | 8.118977e-51 | -8.615850e-47 |
| Msa0672480 | Msa1381480 | 0.835909 | 1.275122e-56 | -8.615850e-47 |
| Msa0672480 | Msa1394310 | 0.810251 | 1.264583e-50 | -8.615850e-47 |
| Msa0672480 | Msa1405220 | 0.837131 | 6.227363e-57 | -8.615850e-47 |
| Msa0672480 | Msa1407970 | 0.812377 | 4.371225e-51 | -8.615850e-47 |
| Msa0672480 | Msa1416370 | 0.827341 | 1.650485e-54 | -8.615850e-47 |
| Msa0672480 | Msa1420270 | 0.825593 | 4.307981e-54 | -8.615850e-47 |
| Msa0672480 | Msa1422810 | 0.805351 | 1.392252e-49 | -8.615850e-47 |
| Msa0672480 | Msa1428780 | 0.809330 | 1.995389e-50 | -8.615850e-47 |
| Msa0672480 | Msa1430130 | 0.803300 | 3.722821e-49 | -8.615850e-47 |
| Msa0672480 | Msa1437270 | 0.818125 | 2.307874e-52 | -8.615850e-47 |
| Msa0672480 | Msa1444120 | 0.802738 | 4.866070e-49 | -8.615850e-47 |
| Msa0672480 | Msa1447180 | 0.809433 | 1.896757e-50 | -8.615850e-47 |
| Msa0672480 | Msa1454450 | 0.842081 | 3.215256e-58 | -8.615850e-47 |
| Msa0672480 | Msa1454960 | 0.827312 | 1.676976e-54 | -8.615850e-47 |
| Msa0672480 | Msa1457160 | 0.834781 | 2.457385e-56 | -8.615850e-47 |
| Msa0672480 | Msa1460320 | -0.814112 | 1.818887e-51 | -8.615850e-47 |
| Msa0672480 | Msa1460750 | 0.802020 | 6.838720e-49 | -8.615850e-47 |
| Msa0672480 | Msa1462360 | 0.810194 | 1.301490e-50 | -8.615850e-47 |
| Msa0130720 | Msa0672480 | 0.830172 | 3.410618e-55 | -8.615850e-47 |
| Msa0139670 | Msa0672480 | 0.802886 | 4.534465e-49 | -8.615850e-47 |
| Msa0142500 | Msa0672480 | 0.823830 | 1.121341e-53 | -8.615850e-47 |
| Msa0152560 | Msa0672480 | 0.813173 | 2.926611e-51 | -8.615850e-47 |
| Msa0154920 | Msa0672480 | 0.836199 | 1.076091e-56 | -8.615850e-47 |
| Msa0156700 | Msa0672480 | 0.800964 | 1.125598e-48 | -8.615850e-47 |
| Msa0163040 | Msa0672480 | 0.808929 | 2.432869e-50 | -8.615850e-47 |
| Msa0167980 | Msa0672480 | 0.810141 | 1.335574e-50 | -8.615850e-47 |
| Msa0183850 | Msa0672480 | 0.828234 | 1.006686e-54 | -8.615850e-47 |
| Msa0183870 | Msa0672480 | 0.827005 | 1.986229e-54 | -8.615850e-47 |
| Msa0207350 | Msa0672480 | 0.836699 | 8.029706e-57 | -8.615850e-47 |
| Msa0220730 | Msa0672480 | 0.814928 | 1.199977e-51 | -8.615850e-47 |
| Msa0365860 | Msa0672480 | 0.822949 | 1.801381e-53 | -8.615850e-47 |
| Msa0382370 | Msa0672480 | 0.827413 | 1.586466e-54 | -8.615850e-47 |
| Msa0389210 | Msa0672480 | 0.823622 | 1.254253e-53 | -8.615850e-47 |
| Msa0390530 | Msa0672480 | 0.802155 | 6.415932e-49 | -8.615850e-47 |
| Msa0398200 | Msa0672480 | 0.801014 | 1.099694e-48 | -8.615850e-47 |
| Msa0403770 | Msa0672480 | 0.805341 | 1.399157e-49 | -8.615850e-47 |
| Msa0422180 | Msa0672480 | 0.814185 | 1.752705e-51 | -8.615850e-47 |
| Msa0432160 | Msa0672480 | 0.820513 | 6.593276e-53 | -8.615850e-47 |
| Msa0436190 | Msa0672480 | 0.801292 | 9.644404e-49 | -8.615850e-47 |
| Msa0436920 | Msa0672480 | -0.805907 | 1.064113e-49 | -8.615850e-47 |
| Msa0450400 | Msa0672480 | -0.813166 | 2.936635e-51 | -8.615850e-47 |
| Msa0450480 | Msa0672480 | 0.826068 | 3.323303e-54 | -8.615850e-47 |
| Msa0467100 | Msa0672480 | 0.810054 | 1.395054e-50 | -8.615850e-47 |
| Msa0469620 | Msa0672480 | -0.808977 | 2.375145e-50 | -8.615850e-47 |
| Msa0476680 | Msa0672480 | 0.824706 | 6.981482e-54 | -8.615850e-47 |
| Msa0481970 | Msa0672480 | 0.808758 | 2.646545e-50 | -8.615850e-47 |
| Msa0239060 | Msa0672480 | 0.802665 | 5.036635e-49 | -8.615850e-47 |
| Msa0257490 | Msa0672480 | 0.803653 | 3.145853e-49 | -8.615850e-47 |
| Msa0296820 | Msa0672480 | 0.834289 | 3.266442e-56 | -8.615850e-47 |
| Msa0296980 | Msa0672480 | -0.823573 | 1.288144e-53 | -8.615850e-47 |
| Msa0317970 | Msa0672480 | 0.803691 | 3.089599e-49 | -8.615850e-47 |
| Msa0321690 | Msa0672480 | 0.800417 | 1.455296e-48 | -8.615850e-47 |
| Msa0330500 | Msa0672480 | 0.817940 | 2.540113e-52 | -8.615850e-47 |
| Msa0340690 | Msa0672480 | 0.808872 | 2.501904e-50 | -8.615850e-47 |
| Msa0340710 | Msa0672480 | 0.814936 | 1.195222e-51 | -8.615850e-47 |
| Msa0347750 | Msa0672480 | 0.824390 | 8.281995e-54 | -8.615850e-47 |
| Msa0517090 | Msa0672480 | 0.824472 | 7.923694e-54 | -8.615850e-47 |
| Msa0518170 | Msa0672480 | 0.810757 | 9.833003e-51 | -8.615850e-47 |
| Msa0521010 | Msa0672480 | 0.828064 | 1.106599e-54 | -8.615850e-47 |
| Msa0521670 | Msa0672480 | 0.817170 | 3.788321e-52 | -8.615850e-47 |
| Msa0524600 | Msa0672480 | 0.804967 | 1.675272e-49 | -8.615850e-47 |
| Msa0548920 | Msa0672480 | 0.859859 | 3.090218e-63 | -8.615850e-47 |
| Msa0549780 | Msa0672480 | 0.800110 | 1.680693e-48 | -8.615850e-47 |
| Msa0567240 | Msa0672480 | 0.812171 | 4.848810e-51 | -8.615850e-47 |
| Msa0587030 | Msa0672480 | 0.809986 | 1.442274e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672480 | MtrunA17_Chr4g0019771 | 94.762 | 210 | 11 | 0 | 1 | 210 | 1 | 210 | 2.52e-144 | 400 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0672480 | AT1G61415.1 | 48.765 | 162 | 80 | 1 | 1 | 162 | 1 | 159 | 1.91e-43 | 144 |
| Msa0672480 | AT1G61415.2 | 45.517 | 145 | 76 | 1 | 18 | 162 | 1 | 142 | 4.92e-34 | 119 |
| Msa0672480 | AT1G61450.1 | 47.573 | 103 | 54 | 0 | 1 | 103 | 1 | 103 | 2.05e-25 | 96.3 |
Find 32 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATATTATAGCTGGTTTC+AGG | 0.147934 | 4_4:-17479307 | Msa0672480:intron |
| CAATTTCTCTTTGAAATTCT+AGG | 0.264996 | 4_4:+17478283 | None:intergenic |
| TAATTCATAGTTCTGAAGTA+TGG | 0.316488 | 4_4:-17477761 | Msa0672480:three_prime_UTR |
| TTTGTCAACTTTGCCAAGTT+TGG | 0.327074 | 4_4:-17477738 | Msa0672480:three_prime_UTR |
| CTCTTCGCATTTGACGATGC+TGG | 0.383965 | 4_4:+17482578 | None:intergenic |
| TGAAAAGGAAATTCAACTCT+TGG | 0.390140 | 4_4:-17478208 | Msa0672480:CDS |
| CTGAGTTCCAGAGCAAGAAC+TGG | 0.404470 | 4_4:-17477890 | Msa0672480:CDS |
| AGAAATCGAAGCTCATATTC+AGG | 0.409384 | 4_4:-17482619 | Msa0672480:CDS |
| CATTCTCCCAGTTCTTGCTC+TGG | 0.410663 | 4_4:+17477883 | None:intergenic |
| TCTTAATTAATTACCAAACT+TGG | 0.413916 | 4_4:+17477725 | None:intergenic |
| CCATATTATAGCTGGTTTCA+GGG | 0.419672 | 4_4:-17479306 | Msa0672480:intron |
| AGAGAAATATTCACTTGAAA+AGG | 0.440197 | 4_4:-17478223 | Msa0672480:CDS |
| TTGTAAAGTGAGGACTTTGT+TGG | 0.483498 | 4_4:-17478247 | Msa0672480:CDS |
| AGTTTGGTAATTAATTAAGA+TGG | 0.486064 | 4_4:-17477722 | Msa0672480:three_prime_UTR |
| CAGGGAATCAGTGAGTACTT+TGG | 0.487807 | 4_4:-17479288 | Msa0672480:CDS |
| CTCTCACATTTCATCTCTCA+AGG | 0.488977 | 4_4:-17482752 | Msa0672480:CDS |
| TCTCAAGGAAATGATCGATC+AGG | 0.503165 | 4_4:-17482737 | Msa0672480:intron |
| TTCTGATGAAGTAGTAAGAA+TGG | 0.507235 | 4_4:-17477636 | Msa0672480:three_prime_UTR |
| AACACAGCAATGGAAGATTC+AGG | 0.514664 | 4_4:-17482784 | Msa0672480:exon |
| GGACGATATGGTTAACAGAA+TGG | 0.534903 | 4_4:-17479234 | Msa0672480:CDS |
| CATCGTCAAATGCGAAGAGA+TGG | 0.541364 | 4_4:-17482574 | Msa0672480:CDS |
| GATCTTCATAATTCAAACTC+AGG | 0.543274 | 4_4:-17478126 | Msa0672480:intron |
| GTTCTGCAGTTCGACACTGT+TGG | 0.572283 | 4_4:-17482504 | Msa0672480:CDS |
| ATCAGTGAGTACTTTGGAGA+AGG | 0.572875 | 4_4:-17479282 | Msa0672480:CDS |
| GTTGGATTCGTAACTCTCGC+TGG | 0.577872 | 4_4:-17482486 | Msa0672480:intron |
| TGAGTTCCAGAGCAAGAACT+GGG | 0.587145 | 4_4:-17477889 | Msa0672480:CDS |
| ACTAAGGAAGCTGAATTGAT+CGG | 0.587240 | 4_4:-17482537 | Msa0672480:CDS |
| GCTGAATTGATCGGAATCTG+TGG | 0.601646 | 4_4:-17482528 | Msa0672480:CDS |
| ATAGAGAAAATTGTAAAGTG+AGG | 0.634744 | 4_4:-17478257 | Msa0672480:CDS |
| AGCTCATATTCAGGTCACAC+GGG | 0.635748 | 4_4:-17482610 | Msa0672480:CDS |
| AAGCTCATATTCAGGTCACA+CGG | 0.669931 | 4_4:-17482611 | Msa0672480:CDS |
| GTAACAGAACAACACAGCAA+TGG | 0.694477 | 4_4:-17482794 | Msa0672480:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTAATAAAAATAA+TGG | - | chr4_4:17478294-17478313 | Msa0672480:CDS | 0.0% |
| !! | ATAAATATTAATAAAAATAA+TGG | - | chr4_4:17478318-17478337 | Msa0672480:intron | 0.0% |
| !! | TAAAAAATTCGAAAAAAATA+CGG | + | chr4_4:17478701-17478720 | None:intergenic | 10.0% |
| !!! | CATTTATTTAATTTAAAATC+TGG | - | chr4_4:17478795-17478814 | Msa0672480:intron | 10.0% |
| !!! | TTTTTTCTTCAAATTATTAT+CGG | - | chr4_4:17479354-17479373 | Msa0672480:intron | 10.0% |
| !! | ATCAATAAATATATTAAAGA+AGG | + | chr4_4:17480747-17480766 | None:intergenic | 10.0% |
| !! | TTATTTAACAATTAATTGTT+CGG | - | chr4_4:17481061-17481080 | Msa0672480:intron | 10.0% |
| !! | TATATATTAGTAGAAAAATA+TGG | + | chr4_4:17481654-17481673 | None:intergenic | 10.0% |
| !! | TTCATTATTATTGATCAATT+AGG | - | chr4_4:17477790-17477809 | Msa0672480:exon | 15.0% |
| !!! | AATATCCATTTTTTTTCTTA+GGG | + | chr4_4:17479033-17479052 | None:intergenic | 15.0% |
| !!! | AAATATCCATTTTTTTTCTT+AGG | + | chr4_4:17479032-17479051 | None:intergenic | 15.0% |
| !! | AAAAAATTCACAAAAATTCA+CGG | - | chr4_4:17478247-17478266 | Msa0672480:CDS | 15.0% |
| !!! | TGATATTTTTTTCAAGAATT+TGG | + | chr4_4:17478440-17478459 | None:intergenic | 15.0% |
| !! | GAAAAAATATCACAAAAAAA+TGG | - | chr4_4:17478391-17478410 | Msa0672480:intron | 15.0% |
| !!! | AAAAATAATGTCAAATTTTC+CGG | - | chr4_4:17478658-17478677 | Msa0672480:intron | 15.0% |
| !!! | GGAATTTTTTTTAAAAAATC+CGG | + | chr4_4:17478680-17478699 | None:intergenic | 15.0% |
| !!! | TTCGAATTTTTTAAAAAATC+TGG | - | chr4_4:17478708-17478727 | Msa0672480:intron | 15.0% |
| !!! | AAATATCCATTTTTTTTCTT+AGG | - | chr4_4:17479032-17479051 | Msa0672480:intron | 15.0% |
| !!! | AATATCCATTTTTTTTCTTA+GGG | - | chr4_4:17479033-17479052 | Msa0672480:intron | 15.0% |
| !! | TAATCAATGATATAAGTTAA+AGG | + | chr4_4:17479109-17479128 | None:intergenic | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | + | chr4_4:17479603-17479622 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAAATTTGCCTT+GGG | + | chr4_4:17479663-17479682 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAAATTTGCCT+TGG | + | chr4_4:17479664-17479683 | None:intergenic | 15.0% |
| !!! | TCTTTAATCTTTTTTATATC+TGG | - | chr4_4:17480802-17480821 | Msa0672480:intron | 15.0% |
| !! | TGAAGAAATATAAATATAAC+AGG | + | chr4_4:17480847-17480866 | None:intergenic | 15.0% |
| !! | TAAAAACTAAAAAGAATTCA+CGG | + | chr4_4:17481006-17481025 | None:intergenic | 15.0% |
| !! | AGTACTATCATTATTATATT+TGG | + | chr4_4:17481572-17481591 | None:intergenic | 15.0% |
| !! | TACTAATATATAAAGACAAA+TGG | - | chr4_4:17481662-17481681 | Msa0672480:intron | 15.0% |
| !!! | ATATATTTACGTTTGTTTTA+TGG | + | chr4_4:17481904-17481923 | None:intergenic | 15.0% |
| !!! | TTTTTCTATTCAAATAGAAA+AGG | - | chr4_4:17481960-17481979 | Msa0672480:intron | 15.0% |
| !! | ATTGAAATGTTACATAATTA+AGG | + | chr4_4:17482072-17482091 | None:intergenic | 15.0% |
| !!! | ATATCCATTTTTTTTCTTAG+GGG | + | chr4_4:17479034-17479053 | None:intergenic | 20.0% |
| !! | TTGAAAATTTGACATTCTAA+AGG | + | chr4_4:17478584-17478603 | None:intergenic | 20.0% |
| !! | TAATTAATTAATTACACACG+TGG | - | chr4_4:17478942-17478961 | Msa0672480:intron | 20.0% |
| !!! | ATATCCATTTTTTTTCTTAG+GGG | - | chr4_4:17479034-17479053 | Msa0672480:intron | 20.0% |
| !!! | CAGATTATTGATCAAATTTT+TGG | - | chr4_4:17479192-17479211 | Msa0672480:intron | 20.0% |
| !!! | TCTTTTTGTGTTAACATATT+AGG | - | chr4_4:17479503-17479522 | Msa0672480:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | + | chr4_4:17479602-17479621 | None:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | + | chr4_4:17479604-17479623 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAATTTGCCTTG+GGG | + | chr4_4:17479662-17479681 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAAAAATGACACG+TGG | - | chr4_4:17479674-17479693 | Msa0672480:intron | 20.0% |
| !!! | GTTTTGTAGTTTTTTTCTTA+GGG | - | chr4_4:17479786-17479805 | Msa0672480:intron | 20.0% |
| !!! | TTTTGTAGTTTTTTTCTTAG+GGG | - | chr4_4:17479787-17479806 | Msa0672480:intron | 20.0% |
| !!! | AAATAGTATTTGCAACTTTT+TGG | - | chr4_4:17479958-17479977 | Msa0672480:intron | 20.0% |
| !! | AAAGATTGTTTACTGAAATT+TGG | - | chr4_4:17480035-17480054 | Msa0672480:intron | 20.0% |
| !! | AAATTTGGATTGTTATATCA+AGG | - | chr4_4:17480050-17480069 | Msa0672480:intron | 20.0% |
| !! | AGAAAATCAAAAACAAAGTA+GGG | + | chr4_4:17480282-17480301 | None:intergenic | 20.0% |
| !! | AAGAAAATCAAAAACAAAGT+AGG | + | chr4_4:17480283-17480302 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTGATTTTCTTCT+TGG | - | chr4_4:17480285-17480304 | Msa0672480:intron | 20.0% |
| !!! | ATATTACCGGTAATTTTTTT+TGG | + | chr4_4:17480404-17480423 | None:intergenic | 20.0% |
| !! | TGTATATCTTATGTAGAAAT+AGG | - | chr4_4:17480517-17480536 | Msa0672480:intron | 20.0% |
| !! | TTATCAAGAAAGAAAAATGA+CGG | + | chr4_4:17480615-17480634 | None:intergenic | 20.0% |
| !! | AATGGACATTAAATTAACAT+AGG | - | chr4_4:17480695-17480714 | Msa0672480:intron | 20.0% |
| !! | AATATATTAAAGAAGGAAAC+AGG | + | chr4_4:17480740-17480759 | None:intergenic | 20.0% |
| !!! | TTAAATTTGAAATCAGCATA+TGG | - | chr4_4:17480914-17480933 | Msa0672480:intron | 20.0% |
| !!! | TTTTTATACTGTTTTGCTTA+TGG | - | chr4_4:17481090-17481109 | Msa0672480:intron | 20.0% |
| !!! | TTTTATACTGTTTTGCTTAT+GGG | - | chr4_4:17481091-17481110 | Msa0672480:intron | 20.0% |
| !!! | TCCATTTTTAACTTTTTGTT+TGG | - | chr4_4:17481367-17481386 | Msa0672480:intron | 20.0% |
| !! | ATAAATTCATATATCTGAGT+TGG | + | chr4_4:17482021-17482040 | None:intergenic | 20.0% |
| !!! | GAATTGTGTTTTGAAAAATT+CGG | - | chr4_4:17482261-17482280 | Msa0672480:intron | 20.0% |
| !! | TATATATGTTAATCCTTGTT+TGG | + | chr4_4:17482453-17482472 | None:intergenic | 20.0% |
| !! | TCTTAATTAATTACCAAACT+TGG | + | chr4_4:17482717-17482736 | None:intergenic | 20.0% |
| !!! | AGTTTGGTAATTAATTAAGA+TGG | - | chr4_4:17482717-17482736 | Msa0672480:intron | 20.0% |
| !! | TCATCTTCATAGTTTAACTT+AGG | - | chr4_4:17477997-17478016 | Msa0672480:intron | 25.0% |
| !!! | TATCCATTTTTTTTCTTAGG+GGG | + | chr4_4:17479035-17479054 | None:intergenic | 25.0% |
| ! | AAAAGAGAAACAAAACATAG+GGG | + | chr4_4:17479005-17479024 | None:intergenic | 25.0% |
| ! | CAAAAGAGAAACAAAACATA+GGG | + | chr4_4:17479004-17479023 | None:intergenic | 25.0% |
| ! | TCAAAAGAGAAACAAAACAT+AGG | + | chr4_4:17479003-17479022 | None:intergenic | 25.0% |
| ! | CAATTAATTAATTACACACG+TGG | + | chr4_4:17478164-17478183 | None:intergenic | 25.0% |
| !!! | TTTTTCGAATAAGTGATTCT+TGG | + | chr4_4:17478279-17478298 | None:intergenic | 25.0% |
| ! | TGGTACATATTTCTTCTTTA+GGG | + | chr4_4:17478499-17478518 | None:intergenic | 25.0% |
| ! | TTGGTACATATTTCTTCTTT+AGG | + | chr4_4:17478500-17478519 | None:intergenic | 25.0% |
| ! | AGAAATATGTACCAAATTTG+TGG | - | chr4_4:17478505-17478524 | Msa0672480:intron | 25.0% |
| ! | GAAAATTCTGTAAAAGATTC+TGG | - | chr4_4:17478609-17478628 | Msa0672480:intron | 25.0% |
| ! | TCAAAAGAGAAACAAAACAT+AGG | - | chr4_4:17479003-17479022 | Msa0672480:intron | 25.0% |
| ! | CAAAAGAGAAACAAAACATA+GGG | - | chr4_4:17479004-17479023 | Msa0672480:intron | 25.0% |
| ! | AAAAGAGAAACAAAACATAG+GGG | - | chr4_4:17479005-17479024 | Msa0672480:intron | 25.0% |
| !!! | TATCCATTTTTTTTCTTAGG+GGG | - | chr4_4:17479035-17479054 | Msa0672480:intron | 25.0% |
| ! | CTTCATAGATATTATCTGAA+TGG | - | chr4_4:17479419-17479438 | Msa0672480:intron | 25.0% |
| ! | TAGATATTATCTGAATGGAA+CGG | - | chr4_4:17479424-17479443 | Msa0672480:intron | 25.0% |
| ! | TGTTAAACCAACAATTTGAT+CGG | - | chr4_4:17479457-17479476 | Msa0672480:intron | 25.0% |
| ! | AATTTAACCGATCAAATTGT+TGG | + | chr4_4:17479467-17479486 | None:intergenic | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | + | chr4_4:17479601-17479620 | None:intergenic | 25.0% |
| ! | AAAAAAAAAATTTGCCTTGG+GGG | + | chr4_4:17479661-17479680 | None:intergenic | 25.0% |
| !!! | GGTTTTGTAGTTTTTTTCTT+AGG | - | chr4_4:17479785-17479804 | Msa0672480:intron | 25.0% |
| !!! | AAGCTTACTTTTTAATAGCA+TGG | - | chr4_4:17479855-17479874 | Msa0672480:intron | 25.0% |
| !!! | TGCGCTTTTCATTTTAAAAA+CGG | - | chr4_4:17479901-17479920 | Msa0672480:intron | 25.0% |
| ! | AATTATTCTCTGTAATATCG+TGG | - | chr4_4:17480112-17480131 | Msa0672480:intron | 25.0% |
| ! | GAAAATCAAAAACAAAGTAG+GGG | + | chr4_4:17480281-17480300 | None:intergenic | 25.0% |
| ! | TGATAATTATTACTGCACAT+TGG | + | chr4_4:17480344-17480363 | None:intergenic | 25.0% |
| ! | CTTGTACCAAAAAAAATTAC+CGG | - | chr4_4:17480395-17480414 | Msa0672480:intron | 25.0% |
| ! | TTTGATAAAGGAAATCACTT+AGG | + | chr4_4:17480455-17480474 | None:intergenic | 25.0% |
| ! | TAAGTGATTTCCTTTATCAA+AGG | - | chr4_4:17480454-17480473 | Msa0672480:intron | 25.0% |
| ! | GACATTAAATTAACATAGGA+AGG | - | chr4_4:17480699-17480718 | Msa0672480:intron | 25.0% |
| !! | AAAGAAAAGCATATGCTTAT+TGG | + | chr4_4:17480787-17480806 | None:intergenic | 25.0% |
| !!! | ATTTTGACAAATAACCAACT+TGG | - | chr4_4:17480869-17480888 | Msa0672480:intron | 25.0% |
| ! | AAAGATTAATCACTACTATG+CGG | - | chr4_4:17480980-17480999 | Msa0672480:intron | 25.0% |
| !!! | TTTTTTCTCCATATTATAGC+TGG | - | chr4_4:17481125-17481144 | Msa0672480:intron | 25.0% |
| ! | TTAACAGAATGGATGAAAAA+CGG | - | chr4_4:17481216-17481235 | Msa0672480:intron | 25.0% |
| !!! | AACTGCTGGAATTATTTTTT+GGG | - | chr4_4:17481300-17481319 | Msa0672480:intron | 25.0% |
| !!! | TTATTTTCTTTAGAGATTGC+TGG | + | chr4_4:17481328-17481347 | None:intergenic | 25.0% |
| ! | GCCAAACAAAAAGTTAAAAA+TGG | + | chr4_4:17481371-17481390 | None:intergenic | 25.0% |
| ! | ACATAAATGCATACTACATA+TGG | + | chr4_4:17481404-17481423 | None:intergenic | 25.0% |
| ! | TGTAGTATGCATTTATGTTA+TGG | - | chr4_4:17481406-17481425 | Msa0672480:intron | 25.0% |
| ! | TATTATATTTGGCCAACTTT+AGG | + | chr4_4:17481561-17481580 | None:intergenic | 25.0% |
| ! | TCAAATGTCTCACATAATAT+TGG | - | chr4_4:17481809-17481828 | Msa0672480:intron | 25.0% |
| !!! | CAATTTCTCTTTGAAATTCT+AGG | + | chr4_4:17482159-17482178 | None:intergenic | 25.0% |
| ! | ATAGAGAAAATTGTAAAGTG+AGG | - | chr4_4:17482182-17482201 | Msa0672480:intron | 25.0% |
| ! | AGAGAAATATTCACTTGAAA+AGG | - | chr4_4:17482216-17482235 | Msa0672480:intron | 25.0% |
| !!! | TGTTTTGAAAAATTCGGTTT+TGG | - | chr4_4:17482267-17482286 | Msa0672480:intron | 25.0% |
| ! | GGTAATAATCTATGTATACA+AGG | - | chr4_4:17482334-17482353 | Msa0672480:intron | 25.0% |
| !!! | TAATTCATAGTTCTGAAGTA+TGG | - | chr4_4:17482678-17482697 | Msa0672480:intron | 25.0% |
| TGATTGAAGAATGAATGAAG+AGG | + | chr4_4:17477760-17477779 | None:intergenic | 30.0% | |
| ! | TCGCAACTATTTGAAACATA+GGG | + | chr4_4:17479064-17479083 | None:intergenic | 30.0% |
| ! | ATCGCAACTATTTGAAACAT+AGG | + | chr4_4:17479063-17479082 | None:intergenic | 30.0% |
| ! | GTTTCAAATAGTTGCGATTT+TGG | - | chr4_4:17478045-17478064 | Msa0672480:intron | 30.0% |
| AAAGAGAAACAAAACATAGG+GGG | + | chr4_4:17479006-17479025 | None:intergenic | 30.0% | |
| AAAGAGAAACAAAACATAGG+GGG | - | chr4_4:17479006-17479025 | Msa0672480:intron | 30.0% | |
| ! | GTTTCAAATAGTTGCGATTT+TGG | + | chr4_4:17478045-17478064 | None:intergenic | 30.0% |
| ! | GCAACTATTTGAAACATAGA+GGG | - | chr4_4:17479066-17479085 | Msa0672480:intron | 30.0% |
| ! | AGCAATATTAGATTAGTTCG+AGG | - | chr4_4:17479160-17479179 | Msa0672480:intron | 30.0% |
| !!! | TAGAAGTTTTGGTGCTATAA+AGG | + | chr4_4:17479269-17479288 | None:intergenic | 30.0% |
| ! | CATGACTTCATTAGAAGTTT+TGG | + | chr4_4:17479280-17479299 | None:intergenic | 30.0% |
| TGCTACATTTGCAAAACTTA+GGG | + | chr4_4:17479631-17479650 | None:intergenic | 30.0% | |
| ! | TTTTGCAAATGTAGCAGTTT+TGG | - | chr4_4:17479635-17479654 | Msa0672480:intron | 30.0% |
| ! | TTGCTTGAAAACATGGTTTT+TGG | - | chr4_4:17480176-17480195 | Msa0672480:intron | 30.0% |
| AGAACTTATGCAATTTGACT+TGG | + | chr4_4:17480212-17480231 | None:intergenic | 30.0% | |
| ATATTTGCGCGCTATATTAA+AGG | - | chr4_4:17480420-17480439 | Msa0672480:intron | 30.0% | |
| !!! | TCTTGTTTTGCCTTTGATAA+AGG | + | chr4_4:17480467-17480486 | None:intergenic | 30.0% |
| ATATACATTCTCTACTGTGA+CGG | + | chr4_4:17480504-17480523 | None:intergenic | 30.0% | |
| TAATGTCCATTAAGAAGTGA+AGG | + | chr4_4:17480686-17480705 | None:intergenic | 30.0% | |
| TAAAAGCTTGTGTGTCTAAT+AGG | - | chr4_4:17480949-17480968 | Msa0672480:intron | 30.0% | |
| TAGTAGTGATTAATCTTTGC+CGG | + | chr4_4:17480978-17480997 | None:intergenic | 30.0% | |
| TGTGTTGTCTTAAAAACAAG+AGG | - | chr4_4:17481183-17481202 | Msa0672480:intron | 30.0% | |
| GTGTTGTCTTAAAAACAAGA+GGG | - | chr4_4:17481184-17481203 | Msa0672480:intron | 30.0% | |
| !!! | CAACTGCTGGAATTATTTTT+TGG | - | chr4_4:17481299-17481318 | Msa0672480:intron | 30.0% |
| AAGATGAAAAAAACTGTACC+TGG | - | chr4_4:17481443-17481462 | Msa0672480:intron | 30.0% | |
| AGATGAAAAAAACTGTACCT+GGG | - | chr4_4:17481444-17481463 | Msa0672480:intron | 30.0% | |
| TACTATTTATCAATAGTGCG+AGG | - | chr4_4:17481521-17481540 | Msa0672480:intron | 30.0% | |
| AATGGTAGCATATAAGATGT+TGG | - | chr4_4:17481680-17481699 | Msa0672480:intron | 30.0% | |
| ATGTCTCACATAATATTGGA+TGG | - | chr4_4:17481813-17481832 | Msa0672480:intron | 30.0% | |
| ! | ATGTCTCATTGTTTCTCATA+TGG | - | chr4_4:17481861-17481880 | Msa0672480:intron | 30.0% |
| AAAAGGAAACAGTGTATGTT+AGG | - | chr4_4:17481977-17481996 | Msa0672480:intron | 30.0% | |
| AATCAATCGGTCATCAAATT+AGG | + | chr4_4:17482102-17482121 | None:intergenic | 30.0% | |
| TGAAAAGGAAATTCAACTCT+TGG | - | chr4_4:17482231-17482250 | Msa0672480:intron | 30.0% | |
| GATCTTCATAATTCAAACTC+AGG | - | chr4_4:17482313-17482332 | Msa0672480:intron | 30.0% | |
| ATCTATGTATACAAGGAAGT+AGG | - | chr4_4:17482341-17482360 | Msa0672480:intron | 30.0% | |
| CATAGAAGTAATAACTAGCA+TGG | + | chr4_4:17482371-17482390 | None:intergenic | 30.0% | |
| ! | ATGTTAATCCTTGTTTGGTT+TGG | + | chr4_4:17482448-17482467 | None:intergenic | 30.0% |
| ! | ACTACAATGTTTTCAGCAAT+TGG | - | chr4_4:17482611-17482630 | Msa0672480:CDS | 30.0% |
| ! | CTACAATGTTTTCAGCAATT+GGG | - | chr4_4:17482612-17482631 | Msa0672480:CDS | 30.0% |
| TTCTGATGAAGTAGTAAGAA+TGG | - | chr4_4:17482803-17482822 | Msa0672480:five_prime_UTR | 30.0% | |
| ATCGAATCGAAGAGAAGAAT+AGG | + | chr4_4:17477730-17477749 | None:intergenic | 35.0% | |
| AGAAATCGAAGCTCATATTC+AGG | - | chr4_4:17477820-17477839 | Msa0672480:CDS | 35.0% | |
| ! | GGAGAATCATTTTGCAACTA+AGG | - | chr4_4:17477886-17477905 | Msa0672480:CDS | 35.0% |
| ACTAAGGAAGCTGAATTGAT+CGG | - | chr4_4:17477902-17477921 | Msa0672480:CDS | 35.0% | |
| ! | CTTAGGCTTAAATGCACTTT+TGG | - | chr4_4:17478014-17478033 | Msa0672480:intron | 35.0% |
| ! | GCAACTATTTGAAACATAGG+GGG | + | chr4_4:17478040-17478059 | None:intergenic | 35.0% |
| ! | CGCAACTATTTGAAACATAG+GGG | + | chr4_4:17479065-17479084 | None:intergenic | 35.0% |
| ATACAACTTGGCCACAAATT+TGG | + | chr4_4:17478519-17478538 | None:intergenic | 35.0% | |
| ! | CGCAACTATTTGAAACATAG+AGG | - | chr4_4:17479065-17479084 | Msa0672480:intron | 35.0% |
| !!! | TGTCAATGTTGTGTTGGTTT+TGG | + | chr4_4:17479304-17479323 | None:intergenic | 35.0% |
| ATTATCTGAATGGAACGGAA+TGG | - | chr4_4:17479429-17479448 | Msa0672480:intron | 35.0% | |
| ! | CTTTCCTAAAGTTGCGATTT+TGG | - | chr4_4:17479575-17479594 | Msa0672480:intron | 35.0% |
| CTACATTTGCAAAACTTAGG+GGG | + | chr4_4:17479629-17479648 | None:intergenic | 35.0% | |
| GCTACATTTGCAAAACTTAG+GGG | + | chr4_4:17479630-17479649 | None:intergenic | 35.0% | |
| CTGCTACATTTGCAAAACTT+AGG | + | chr4_4:17479632-17479651 | None:intergenic | 35.0% | |
| ! | CTTTCCCAAAGTTGCAATTT+TGG | + | chr4_4:17479814-17479833 | None:intergenic | 35.0% |
| ! | ATTGCAACTTTGGGAAAGTT+AGG | - | chr4_4:17479816-17479835 | Msa0672480:intron | 35.0% |
| ! | TTGCAACTTTGGGAAAGTTA+GGG | - | chr4_4:17479817-17479836 | Msa0672480:intron | 35.0% |
| !! | AGCTTTTGTTTAAGCATGAC+AGG | - | chr4_4:17479999-17480018 | Msa0672480:intron | 35.0% |
| !! | GCTTTTGTTTAAGCATGACA+GGG | - | chr4_4:17480000-17480019 | Msa0672480:intron | 35.0% |
| !! | CTTTTGTTTAAGCATGACAG+GGG | - | chr4_4:17480001-17480020 | Msa0672480:intron | 35.0% |
| !! | GTTTTCAAGCAATTCTACGT+GGG | + | chr4_4:17480168-17480187 | None:intergenic | 35.0% |
| !! | TGTTTTCAAGCAATTCTACG+TGG | + | chr4_4:17480169-17480188 | None:intergenic | 35.0% |
| CGTAGAATTGCTTGAAAACA+TGG | - | chr4_4:17480169-17480188 | Msa0672480:intron | 35.0% | |
| TGCATAAGTTCTTCTTTCTC+AGG | - | chr4_4:17480220-17480239 | Msa0672480:intron | 35.0% | |
| GCATAAGTTCTTCTTTCTCA+GGG | - | chr4_4:17480221-17480240 | Msa0672480:intron | 35.0% | |
| TGAAGAACCATGAATAGCAA+GGG | + | chr4_4:17480313-17480332 | None:intergenic | 35.0% | |
| ATATAGCGCGCAAATATTAC+CGG | + | chr4_4:17480417-17480436 | None:intergenic | 35.0% | |
| AACAGTCCTTCACTTCTTAA+TGG | - | chr4_4:17480677-17480696 | Msa0672480:intron | 35.0% | |
| GACAAATAACCAACTTGGTT+TGG | - | chr4_4:17480874-17480893 | Msa0672480:intron | 35.0% | |
| ! | TCAGATTTTCCAAACCAAGT+TGG | + | chr4_4:17480886-17480905 | None:intergenic | 35.0% |
| ATCAGCATATGGAGAAAACT+TGG | - | chr4_4:17480925-17480944 | Msa0672480:intron | 35.0% | |
| AGTAGTGATTAATCTTTGCC+GGG | + | chr4_4:17480977-17480996 | None:intergenic | 35.0% | |
| ! | TCCATATTATAGCTGGTTTC+AGG | - | chr4_4:17481132-17481151 | Msa0672480:intron | 35.0% |
| ! | CCATATTATAGCTGGTTTCA+GGG | - | chr4_4:17481133-17481152 | Msa0672480:intron | 35.0% |
| TAAAAACAAGAGGGACGATA+TGG | - | chr4_4:17481193-17481212 | Msa0672480:intron | 35.0% | |
| CAAGTTAAATTTGCAACTGC+TGG | - | chr4_4:17481286-17481305 | Msa0672480:intron | 35.0% | |
| TCTCACATAATATTGGATGG+AGG | - | chr4_4:17481816-17481835 | Msa0672480:intron | 35.0% | |
| CTCACATAATATTGGATGGA+GGG | - | chr4_4:17481817-17481836 | Msa0672480:intron | 35.0% | |
| CTGCTTGGAAACAAATCAAT+CGG | + | chr4_4:17482115-17482134 | None:intergenic | 35.0% | |
| !! | GATTGATTTGTTTCCAAGCA+GGG | - | chr4_4:17482114-17482133 | Msa0672480:intron | 35.0% |
| TTGTAAAGTGAGGACTTTGT+TGG | - | chr4_4:17482192-17482211 | Msa0672480:intron | 35.0% | |
| TTATTGCACCAAACCAAACA+AGG | - | chr4_4:17482437-17482456 | Msa0672480:intron | 35.0% | |
| TTTGTCAACTTTGCCAAGTT+TGG | - | chr4_4:17482701-17482720 | Msa0672480:intron | 35.0% | |
| GTAACAGAACAACACAGCAA+TGG | - | chr4_4:17477645-17477664 | Msa0672480:three_prime_UTR | 40.0% | |
| AACACAGCAATGGAAGATTC+AGG | - | chr4_4:17477655-17477674 | Msa0672480:three_prime_UTR | 40.0% | |
| CTCTCACATTTCATCTCTCA+AGG | - | chr4_4:17477687-17477706 | Msa0672480:three_prime_UTR | 40.0% | |
| TCTCAAGGAAATGATCGATC+AGG | - | chr4_4:17477702-17477721 | Msa0672480:three_prime_UTR | 40.0% | |
| AAGCTCATATTCAGGTCACA+CGG | - | chr4_4:17477828-17477847 | Msa0672480:CDS | 40.0% | |
| TGGCCCCCTAAGAAAAAAAA+TGG | - | chr4_4:17478065-17478084 | Msa0672480:intron | 40.0% | |
| ! | TTTGACATTCTAAAGGCGCA+AGG | + | chr4_4:17478577-17478596 | None:intergenic | 40.0% |
| TGGCCCCCTAAGAAAAAAAA+TGG | + | chr4_4:17478065-17478084 | None:intergenic | 40.0% | |
| TGTCAGTGTCAATGTTGTGT+TGG | + | chr4_4:17479310-17479329 | None:intergenic | 40.0% | |
| ! | GCAACTTTAGGAAAGTTAGC+GGG | + | chr4_4:17479570-17479589 | None:intergenic | 40.0% |
| ! | CGCAACTTTAGGAAAGTTAG+CGG | + | chr4_4:17479571-17479590 | None:intergenic | 40.0% |
| GGGACCAAAATTGCAACTTT+GGG | - | chr4_4:17479807-17479826 | Msa0672480:intron | 40.0% | |
| ! | TGCAACTTTGGGAAAGTTAG+GGG | - | chr4_4:17479818-17479837 | Msa0672480:intron | 40.0% |
| AAGTTCTTCTTTCTCAGGGA+CGG | - | chr4_4:17480225-17480244 | Msa0672480:intron | 40.0% | |
| GTGAAGAACCATGAATAGCA+AGG | + | chr4_4:17480314-17480333 | None:intergenic | 40.0% | |
| ATTACTGCACATTGGACTGT+TGG | + | chr4_4:17480336-17480355 | None:intergenic | 40.0% | |
| !! | ATCCAGGAATTTTGAGTAGC+GGG | + | chr4_4:17480592-17480611 | None:intergenic | 40.0% |
| !! | GATCCAGGAATTTTGAGTAG+CGG | + | chr4_4:17480593-17480612 | None:intergenic | 40.0% |
| !! | GAAAGAAAAATGACGGATCC+AGG | + | chr4_4:17480608-17480627 | None:intergenic | 40.0% |
| AAGGACTGTTACTGATAGCT+AGG | + | chr4_4:17480667-17480686 | None:intergenic | 40.0% | |
| TTGTGTGTCTAATAGGTTCC+CGG | - | chr4_4:17480956-17480975 | Msa0672480:intron | 40.0% | |
| CCCTGAAACCAGCTATAATA+TGG | + | chr4_4:17481136-17481155 | None:intergenic | 40.0% | |
| ! | ATCAGTGAGTACTTTGGAGA+AGG | - | chr4_4:17481157-17481176 | Msa0672480:intron | 40.0% |
| GGACGATATGGTTAACAGAA+TGG | - | chr4_4:17481205-17481224 | Msa0672480:intron | 40.0% | |
| TCACATGTGATTAGGTCGTA+TGG | - | chr4_4:17481470-17481489 | Msa0672480:intron | 40.0% | |
| CACATGTGATTAGGTCGTAT+GGG | - | chr4_4:17481471-17481490 | Msa0672480:intron | 40.0% | |
| AGCTCCAAAGAACCTAAAGT+TGG | - | chr4_4:17481546-17481565 | Msa0672480:intron | 40.0% | |
| ! | TTGGCCAACTTTAGGTTCTT+TGG | + | chr4_4:17481553-17481572 | None:intergenic | 40.0% |
| ACATAATATTGGATGGAGGG+AGG | - | chr4_4:17481820-17481839 | Msa0672480:intron | 40.0% | |
| !! | CGATTGATTTGTTTCCAAGC+AGG | - | chr4_4:17482113-17482132 | Msa0672480:intron | 40.0% |
| !! | TTCGGTTTTGGCATTTGTAG+AGG | - | chr4_4:17482279-17482298 | Msa0672480:intron | 40.0% |
| AGCTCATATTCAGGTCACAC+GGG | - | chr4_4:17477829-17477848 | Msa0672480:CDS | 45.0% | |
| CATCGTCAAATGCGAAGAGA+TGG | - | chr4_4:17477865-17477884 | Msa0672480:CDS | 45.0% | |
| GCTGAATTGATCGGAATCTG+TGG | - | chr4_4:17477911-17477930 | Msa0672480:intron | 45.0% | |
| TGGCCAAGTTGTATTCTCGT+CGG | - | chr4_4:17478525-17478544 | Msa0672480:intron | 45.0% | |
| ACACCGACGAGAATACAACT+TGG | + | chr4_4:17478531-17478550 | None:intergenic | 45.0% | |
| CATTTGCAAAACTTAGGGGG+CGG | + | chr4_4:17479626-17479645 | None:intergenic | 45.0% | |
| AGCGTAGACCGAGTCAAAAT+TGG | - | chr4_4:17479720-17479739 | Msa0672480:intron | 45.0% | |
| !! | ACCGAGTCAAAATTGGCCTT+GGG | - | chr4_4:17479727-17479746 | Msa0672480:intron | 45.0% |
| ! | TTTTGCAACCGTGGCAGTTT+TGG | + | chr4_4:17479755-17479774 | None:intergenic | 45.0% |
| TGCCACGGTTGCAAAACATA+GGG | - | chr4_4:17479759-17479778 | Msa0672480:intron | 45.0% | |
| GGGGACCAAAATTGCAACTT+TGG | - | chr4_4:17479806-17479825 | Msa0672480:intron | 45.0% | |
| ! | GCAACTTTGGGAAAGTTAGG+GGG | - | chr4_4:17479819-17479838 | Msa0672480:intron | 45.0% |
| !! | CTTGGTACCCTTGCTATTCA+TGG | - | chr4_4:17480303-17480322 | Msa0672480:intron | 45.0% |
| CAGGGAATCAGTGAGTACTT+TGG | - | chr4_4:17481151-17481170 | Msa0672480:intron | 45.0% | |
| CTAATCACATGTGAATGCCC+AGG | + | chr4_4:17481464-17481483 | None:intergenic | 45.0% | |
| CTGGGCATTCACATGTGATT+AGG | - | chr4_4:17481462-17481481 | Msa0672480:intron | 45.0% | |
| TGTGATTAGGTCGTATGGGA+TGG | - | chr4_4:17481475-17481494 | Msa0672480:intron | 45.0% | |
| GTGATTAGGTCGTATGGGAT+GGG | - | chr4_4:17481476-17481495 | Msa0672480:intron | 45.0% | |
| !!! | TGGATGGAGGGAGGTATTTT+TGG | - | chr4_4:17481829-17481848 | Msa0672480:intron | 45.0% |
| GCAGTAAATTCTTCCCTGCT+TGG | + | chr4_4:17482130-17482149 | None:intergenic | 45.0% | |
| ! | GGGAAGTGCATTGAAAGGTT+AGG | + | chr4_4:17482503-17482522 | None:intergenic | 45.0% |
| ! | GTTTGGGGAAGTGCATTGAA+AGG | + | chr4_4:17482508-17482527 | None:intergenic | 45.0% |
| AGCTTCTAATGCTGCAGTAG+GGG | + | chr4_4:17482531-17482550 | None:intergenic | 45.0% | |
| CAGCTTCTAATGCTGCAGTA+GGG | + | chr4_4:17482532-17482551 | None:intergenic | 45.0% | |
| TCAGCTTCTAATGCTGCAGT+AGG | + | chr4_4:17482533-17482552 | None:intergenic | 45.0% | |
| TGAGTTCCAGAGCAAGAACT+GGG | - | chr4_4:17482550-17482569 | Msa0672480:CDS | 45.0% | |
| !! | TAAAAAATATTAAAAAATTC+TGG | + | chr4_4:17478867-17478886 | None:intergenic | 5.0% |
| CTCTTCGCATTTGACGATGC+TGG | + | chr4_4:17477864-17477883 | None:intergenic | 50.0% | |
| GTTCTGCAGTTCGACACTGT+TGG | - | chr4_4:17477935-17477954 | Msa0672480:intron | 50.0% | |
| GTTGGATTCGTAACTCTCGC+TGG | - | chr4_4:17477953-17477972 | Msa0672480:intron | 50.0% | |
| TGACCAAGTCAACGCATACG+TGG | - | chr4_4:17478134-17478153 | Msa0672480:CDS | 50.0% | |
| !! | ATGCCACGTATGCGTTGACT+TGG | + | chr4_4:17478966-17478985 | None:intergenic | 50.0% |
| !! | ATGCCACGTATGCGTTGACT+TGG | - | chr4_4:17478966-17478985 | Msa0672480:intron | 50.0% |
| TGACCAAGTCAACGCATACG+TGG | + | chr4_4:17478134-17478153 | None:intergenic | 50.0% | |
| CGATGTGTCAGTGTTGTGTC+TGG | - | chr4_4:17479380-17479399 | Msa0672480:intron | 50.0% | |
| GGGGCCAAAATCGCAACTTT+AGG | + | chr4_4:17479582-17479601 | None:intergenic | 50.0% | |
| ! | GACCGAGTCAAAATTGGCCT+TGG | - | chr4_4:17479726-17479745 | Msa0672480:intron | 50.0% |
| !!! | CCCCAAGGCCAATTTTGACT+CGG | + | chr4_4:17479731-17479750 | None:intergenic | 50.0% |
| !! | CCGAGTCAAAATTGGCCTTG+GGG | - | chr4_4:17479728-17479747 | Msa0672480:intron | 50.0% |
| !! | CGAGTCAAAATTGGCCTTGG+GGG | - | chr4_4:17479729-17479748 | Msa0672480:intron | 50.0% |
| CTGCCACGGTTGCAAAACAT+AGG | - | chr4_4:17479758-17479777 | Msa0672480:intron | 50.0% | |
| GCCACGGTTGCAAAACATAG+GGG | - | chr4_4:17479760-17479779 | Msa0672480:intron | 50.0% | |
| CCACGGTTGCAAAACATAGG+GGG | - | chr4_4:17479761-17479780 | Msa0672480:intron | 50.0% | |
| CTCCCGCTACTCAAAATTCC+TGG | - | chr4_4:17480587-17480606 | Msa0672480:intron | 50.0% | |
| AATGCTGCAGTAGGGGGTTT+GGG | + | chr4_4:17482524-17482543 | None:intergenic | 50.0% | |
| TAATGCTGCAGTAGGGGGTT+TGG | + | chr4_4:17482525-17482544 | None:intergenic | 50.0% | |
| GCTTCTAATGCTGCAGTAGG+GGG | + | chr4_4:17482530-17482549 | None:intergenic | 50.0% | |
| CTGAGTTCCAGAGCAAGAAC+TGG | - | chr4_4:17482549-17482568 | Msa0672480:CDS | 50.0% | |
| CATTCTCCCAGTTCTTGCTC+TGG | + | chr4_4:17482559-17482578 | None:intergenic | 50.0% | |
| !! | TGTAGCAGTTTTGGCCCCCA+AGG | - | chr4_4:17479644-17479663 | Msa0672480:intron | 55.0% |
| TGACACGTGGCACCTCACTT+AGG | - | chr4_4:17479687-17479706 | Msa0672480:intron | 55.0% | |
| GACACGTGGCACCTCACTTA+GGG | - | chr4_4:17479688-17479707 | Msa0672480:intron | 55.0% | |
| ! | CCCCCTATGTTTTGCAACCG+TGG | + | chr4_4:17479764-17479783 | None:intergenic | 55.0% |
| CGGTTGCAAAACATAGGGGG+CGG | - | chr4_4:17479764-17479783 | Msa0672480:intron | 55.0% | |
| ATGCTGCAGTAGGGGGTTTG+GGG | + | chr4_4:17482523-17482542 | None:intergenic | 55.0% | |
| CTGACGTGGCACCCTAAGTG+AGG | + | chr4_4:17479702-17479721 | None:intergenic | 60.0% | |
| !! | TGACTCGGTCTACGCTGACG+TGG | + | chr4_4:17479716-17479735 | None:intergenic | 60.0% |
| CTTGGGGGCCAAAACTGCCA+CGG | - | chr4_4:17479744-17479763 | Msa0672480:intron | 60.0% | |
| TCTCAGGGACGGATGCACGT+CGG | - | chr4_4:17480236-17480255 | Msa0672480:intron | 60.0% | |
| !! | CGTGGCAGTTTTGGCCCCCA+AGG | + | chr4_4:17479746-17479765 | None:intergenic | 65.0% |
| GACGGATGCACGTCGGCACT+TGG | - | chr4_4:17480243-17480262 | Msa0672480:intron | 65.0% | |
| !! | TGCACGTCGGCACTTGGTGC+AGG | - | chr4_4:17480249-17480268 | Msa0672480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 17477622 | 17482839 | 17477622 | ID=Msa0672480;Name=Msa0672480 |
| chr4_4 | mRNA | 17477622 | 17482839 | 17477622 | ID=Msa0672480-mRNA-1;Parent=Msa0672480;Name=Msa0672480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=42|1|1|1|1|1|5|184|210 |
| chr4_4 | exon | 17477622 | 17477921 | 17477622 | ID=Msa0672480-mRNA-1:exon:5111;Parent=Msa0672480-mRNA-1 |
| chr4_4 | exon | 17478127 | 17478326 | 17478127 | ID=Msa0672480-mRNA-1:exon:5110;Parent=Msa0672480-mRNA-1 |
| chr4_4 | exon | 17479224 | 17479317 | 17479224 | ID=Msa0672480-mRNA-1:exon:5109;Parent=Msa0672480-mRNA-1 |
| chr4_4 | exon | 17482487 | 17482649 | 17482487 | ID=Msa0672480-mRNA-1:exon:5108;Parent=Msa0672480-mRNA-1 |
| chr4_4 | exon | 17482738 | 17482839 | 17482738 | ID=Msa0672480-mRNA-1:exon:5107;Parent=Msa0672480-mRNA-1 |
| chr4_4 | five_prime_UTR | 17482798 | 17482839 | 17482798 | ID=Msa0672480-mRNA-1:five_prime_utr;Parent=Msa0672480-mRNA-1 |
| chr4_4 | CDS | 17482738 | 17482797 | 17482738 | ID=Msa0672480-mRNA-1:cds;Parent=Msa0672480-mRNA-1 |
| chr4_4 | CDS | 17482487 | 17482649 | 17482487 | ID=Msa0672480-mRNA-1:cds;Parent=Msa0672480-mRNA-1 |
| chr4_4 | CDS | 17479224 | 17479317 | 17479224 | ID=Msa0672480-mRNA-1:cds;Parent=Msa0672480-mRNA-1 |
| chr4_4 | CDS | 17478127 | 17478326 | 17478127 | ID=Msa0672480-mRNA-1:cds;Parent=Msa0672480-mRNA-1 |
| chr4_4 | CDS | 17477806 | 17477921 | 17477806 | ID=Msa0672480-mRNA-1:cds;Parent=Msa0672480-mRNA-1 |
| chr4_4 | three_prime_UTR | 17477622 | 17477805 | 17477622 | ID=Msa0672480-mRNA-1:three_prime_utr;Parent=Msa0672480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
