AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1416370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416370 MtrunA17_Chr1g0193561 98.540 137 2 0 1 137 1 137 2.48e-94 268
Msa1416370 MtrunA17_Chr4g0066341 97.810 137 2 1 1 137 1 136 1.35e-91 261
Msa1416370 MtrunA17_Chr1g0193621 91.489 141 7 2 1 137 1 140 1.32e-86 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416370 AT5G03050.2 58.730 126 47 2 10 132 11 134 1.49e-42 137
Msa1416370 AT5G03050.1 58.730 126 47 2 10 132 11 134 1.49e-42 137

Find 47 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATACTTGGGCTGTTT+TGG 0.199624 tig0024351:+2330 Msa1416370:three_prime_UTR
AATATCCAATTCATTTCTAT+TGG 0.230794 tig0024351:+2359 Msa1416370:three_prime_UTR
ATCAGGGAAAACAATGTTTA+AGG 0.261813 tig0024351:+1985 Msa1416370:CDS
ATTCAAAATTCATTCAGATT+TGG 0.295741 tig0024351:+481 Msa1416370:five_prime_UTR
TGCATAACTCTTGGAATACT+TGG 0.322190 tig0024351:+2320 Msa1416370:three_prime_UTR
CCCGTTATATTCAGCGCATT+TGG 0.325124 tig0024351:+402 Msa1416370:five_prime_UTR
CCACGTTTGGTTAATCTTGT+TGG 0.333278 tig0024351:+2443 Msa1416370:three_prime_UTR
GTATCTGAGCTCTTGGAATC+AGG 0.345471 tig0024351:+1968 Msa1416370:CDS
ATATCCAATTCATTTCTATT+GGG 0.345862 tig0024351:+2360 Msa1416370:three_prime_UTR
TATTGAATCTAAACTCTCAT+AGG 0.355852 tig0024351:+309 Msa1416370:five_prime_UTR
CCAAGTTGGGTCTGAAGAAA+TGG 0.369614 tig0024351:+1795 Msa1416370:CDS
ACAGCCCAATAGAAATGAAT+TGG 0.384691 tig0024351:-2364 None:intergenic
GAAAATTGAGATTGAGTTCA+AGG 0.391026 tig0024351:-380 None:intergenic
AGCATTAGCTTCCTCATTTG+AGG 0.397998 tig0024351:-2215 None:intergenic
TAACCAATGTCAGCTCAAAA+AGG 0.399910 tig0024351:+1554 Msa1416370:exon
GGTTAATCTTGTTGGAGGTA+TGG 0.415303 tig0024351:+2451 Msa1416370:three_prime_UTR
TATTCATGAGTCACCACGTT+TGG 0.429549 tig0024351:+2430 Msa1416370:three_prime_UTR
CTTGTAGGTATCTGAGCTCT+TGG 0.437315 tig0024351:+1961 Msa1416370:intron
CCATTTCTTCAGACCCAACT+TGG 0.441813 tig0024351:-1795 None:intergenic
CCAAGTTGTGAGAGAAGAAA+AGG 0.449910 tig0024351:-539 None:intergenic
CTAGGTATATGCATAACTCT+TGG 0.455507 tig0024351:+2311 Msa1416370:three_prime_UTR
CCAAATGCGCTGAATATAAC+GGG 0.466174 tig0024351:-402 None:intergenic
AAGCAGGATTCACAAGGAAC+AGG 0.472958 tig0024351:+2147 Msa1416370:intron
TCCAAATGCGCTGAATATAA+CGG 0.475147 tig0024351:-403 None:intergenic
CAACAATCAGAAAACCTAAC+CGG 0.491910 tig0024351:+568 Msa1416370:five_prime_UTR
GGTTTGAGACTAACCAAGTT+GGG 0.494830 tig0024351:+1782 Msa1416370:CDS
TATCTGAGCTCTTGGAATCA+GGG 0.503680 tig0024351:+1969 Msa1416370:CDS
GCATGGACAGTGGAGCTTCA+AGG 0.522029 tig0024351:+1579 Msa1416370:CDS
CGTTTGGTTAATCTTGTTGG+AGG 0.523553 tig0024351:+2446 Msa1416370:three_prime_UTR
TCAAGGAAACGTATGAAACC+TGG 0.524964 tig0024351:+1596 Msa1416370:CDS
ATCGCAGATTGTCCTTGTAC+AGG 0.525946 tig0024351:+1753 Msa1416370:CDS
CAAACCCTTCCTCCTGTACA+AGG 0.529759 tig0024351:-1765 None:intergenic
ATTGTCCTTGTACAGGAGGA+AGG 0.538219 tig0024351:+1760 Msa1416370:CDS
TTGTCCTTGTACAGGAGGAA+GGG 0.558464 tig0024351:+1761 Msa1416370:CDS
TTAAAGAATTCAATAAACAT+TGG 0.560206 tig0024351:-2537 None:intergenic
CAAGGAAACGTATGAAACCT+GGG 0.567520 tig0024351:+1597 Msa1416370:CDS
GGTTGCCTCATGTCATGTCT+AGG 0.581953 tig0024351:+2293 Msa1416370:three_prime_UTR
GCATAACTCTTGGAATACTT+GGG 0.586646 tig0024351:+2321 Msa1416370:three_prime_UTR
TCAAATAAGCAGGATTCACA+AGG 0.592512 tig0024351:+2141 Msa1416370:intron
GGGCTGGCATTTCAGAAACA+AGG 0.596580 tig0024351:+2514 Msa1416370:three_prime_UTR
GGGTTTGAGACTAACCAAGT+TGG 0.597415 tig0024351:+1781 Msa1416370:CDS
TGCACTTGATGCCTCAAATG+AGG 0.607261 tig0024351:+2204 Msa1416370:CDS
CTCGTAATGATTAGTCAATG+TGG 0.608164 tig0024351:+2272 Msa1416370:exon
GCAGATTGTCCTTGTACAGG+AGG 0.643938 tig0024351:+1756 Msa1416370:CDS
CCAACAAGATTAACCAAACG+TGG 0.656398 tig0024351:-2443 None:intergenic
AAGGAAACGTATGAAACCTG+GGG 0.689052 tig0024351:+1598 Msa1416370:CDS
ATATACCTAGACATGACATG+AGG 0.734630 tig0024351:-2298 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATATCTGATTAATTTA+TGG + tig0024351:650-669 Msa1416370:intron 15.0%
!!! TATTAGATTTTGAGTATTTT+TGG + tig0024351:1022-1041 Msa1416370:intron 15.0%
!! AAGTTTGAATTATAATTTCT+AGG - tig0024351:1516-1535 None:intergenic 15.0%
!! TTAAAGAATTCAATAAACAT+TGG - tig0024351:2540-2559 None:intergenic 15.0%
!! TTCAATATCTGATTAATTTA+TGG + tig0024351:650-669 Msa1416370:intron 15.0%
!!! TATTAGATTTTGAGTATTTT+TGG + tig0024351:1022-1041 Msa1416370:intron 15.0%
!! AAGTTTGAATTATAATTTCT+AGG - tig0024351:1516-1535 None:intergenic 15.0%
!! TTAAAGAATTCAATAAACAT+TGG - tig0024351:2540-2559 None:intergenic 15.0%
!! ATTCAAAATTCATTCAGATT+TGG + tig0024351:481-500 Msa1416370:five_prime_UTR 20.0%
!!! ATTGTGTTATTTATTTGTTG+CGG + tig0024351:820-839 Msa1416370:intron 20.0%
!!! ATGTTTGAAATGTTTAATTG+TGG + tig0024351:1934-1953 Msa1416370:intron 20.0%
!! TTTAAACATTGAATGTTCAA+TGG - tig0024351:2061-2080 None:intergenic 20.0%
!!! TGTTAGTTTTTGACTTTTTA+TGG + tig0024351:2101-2120 Msa1416370:intron 20.0%
!! AATATCCAATTCATTTCTAT+TGG + tig0024351:2359-2378 Msa1416370:three_prime_UTR 20.0%
!! ATATCCAATTCATTTCTATT+GGG + tig0024351:2360-2379 Msa1416370:three_prime_UTR 20.0%
!! ATTCAAAATTCATTCAGATT+TGG + tig0024351:481-500 Msa1416370:five_prime_UTR 20.0%
!!! ATTGTGTTATTTATTTGTTG+CGG + tig0024351:820-839 Msa1416370:intron 20.0%
!!! ATGTTTGAAATGTTTAATTG+TGG + tig0024351:1934-1953 Msa1416370:intron 20.0%
!! TTTAAACATTGAATGTTCAA+TGG - tig0024351:2061-2080 None:intergenic 20.0%
!!! TGTTAGTTTTTGACTTTTTA+TGG + tig0024351:2101-2120 Msa1416370:intron 20.0%
!! AATATCCAATTCATTTCTAT+TGG + tig0024351:2359-2378 Msa1416370:three_prime_UTR 20.0%
!! ATATCCAATTCATTTCTATT+GGG + tig0024351:2360-2379 Msa1416370:three_prime_UTR 20.0%
! TATTGAATCTAAACTCTCAT+AGG + tig0024351:309-328 Msa1416370:five_prime_UTR 25.0%
! TATGATATAAGCATTCTGTT+TGG + tig0024351:747-766 Msa1416370:intron 25.0%
!! TTGTTTGTTAATGTTATGCT+AGG + tig0024351:894-913 Msa1416370:intron 25.0%
!! GATGAATTTTCTACATGTTT+TGG + tig0024351:981-1000 Msa1416370:intron 25.0%
! CAAATAAGTCAATCTAAACA+GGG - tig0024351:1143-1162 None:intergenic 25.0%
! TCAAATAAGTCAATCTAAAC+AGG - tig0024351:1144-1163 None:intergenic 25.0%
! AAGTTATTATGAAAGTAAGC+TGG - tig0024351:1248-1267 None:intergenic 25.0%
! CAAATAAGCAATTCCAAATA+GGG - tig0024351:1310-1329 None:intergenic 25.0%
! TCAAATAAGCAATTCCAAAT+AGG - tig0024351:1311-1330 None:intergenic 25.0%
!! CTTTTCTTTTCACAATAAAC+AGG + tig0024351:1699-1718 Msa1416370:intron 25.0%
! TTTAATTGTGGATTTCTTGT+AGG + tig0024351:1946-1965 Msa1416370:intron 25.0%
!!! CTTTTAACTTTCAAATAAGC+AGG + tig0024351:2131-2150 Msa1416370:intron 25.0%
! TATTGAATCTAAACTCTCAT+AGG + tig0024351:309-328 Msa1416370:five_prime_UTR 25.0%
! TATGATATAAGCATTCTGTT+TGG + tig0024351:747-766 Msa1416370:intron 25.0%
!! TTGTTTGTTAATGTTATGCT+AGG + tig0024351:894-913 Msa1416370:intron 25.0%
!! GATGAATTTTCTACATGTTT+TGG + tig0024351:981-1000 Msa1416370:intron 25.0%
! CAAATAAGTCAATCTAAACA+GGG - tig0024351:1143-1162 None:intergenic 25.0%
! TCAAATAAGTCAATCTAAAC+AGG - tig0024351:1144-1163 None:intergenic 25.0%
! AAGTTATTATGAAAGTAAGC+TGG - tig0024351:1248-1267 None:intergenic 25.0%
! CAAATAAGCAATTCCAAATA+GGG - tig0024351:1310-1329 None:intergenic 25.0%
! TCAAATAAGCAATTCCAAAT+AGG - tig0024351:1311-1330 None:intergenic 25.0%
!! CTTTTCTTTTCACAATAAAC+AGG + tig0024351:1699-1718 Msa1416370:intron 25.0%
! TTTAATTGTGGATTTCTTGT+AGG + tig0024351:1946-1965 Msa1416370:intron 25.0%
!!! CTTTTAACTTTCAAATAAGC+AGG + tig0024351:2131-2150 Msa1416370:intron 25.0%
! ATGAGTTTTCCACATGTTTT+CGG - tig0024351:282-301 None:intergenic 30.0%
GAAAATTGAGATTGAGTTCA+AGG - tig0024351:383-402 None:intergenic 30.0%
!!! GCGCATTTCAAATTTTGATT+GGG + tig0024351:443-462 Msa1416370:five_prime_UTR 30.0%
!!! TTTCGATTTGGTTTTTGCAT+TGG + tig0024351:770-789 Msa1416370:intron 30.0%
! CTATAAGCTGCAAATTTTAG+TGG + tig0024351:1476-1495 Msa1416370:intron 30.0%
!!! CAAACTTGTTTTATACCTGT+AGG + tig0024351:1529-1548 Msa1416370:intron 30.0%
ACGACAAGAAAAATGTTGAA+AGG - tig0024351:1639-1658 None:intergenic 30.0%
! AGATTGAGAATTTTACTCAG+AGG + tig0024351:1845-1864 Msa1416370:CDS 30.0%
! GATTGAGAATTTTACTCAGA+GGG + tig0024351:1846-1865 Msa1416370:CDS 30.0%
ATCAGGGAAAACAATGTTTA+AGG + tig0024351:1985-2004 Msa1416370:CDS 30.0%
!!! ATCTGTAGCATTTTAGTTTG+AGG + tig0024351:2493-2512 Msa1416370:three_prime_UTR 30.0%
!!! TCTGTAGCATTTTAGTTTGA+GGG + tig0024351:2494-2513 Msa1416370:three_prime_UTR 30.0%
! ATGAGTTTTCCACATGTTTT+CGG - tig0024351:282-301 None:intergenic 30.0%
GAAAATTGAGATTGAGTTCA+AGG - tig0024351:383-402 None:intergenic 30.0%
!!! GCGCATTTCAAATTTTGATT+GGG + tig0024351:443-462 Msa1416370:five_prime_UTR 30.0%
!!! TTTCGATTTGGTTTTTGCAT+TGG + tig0024351:770-789 Msa1416370:intron 30.0%
! CTATAAGCTGCAAATTTTAG+TGG + tig0024351:1476-1495 Msa1416370:intron 30.0%
!!! CAAACTTGTTTTATACCTGT+AGG + tig0024351:1529-1548 Msa1416370:intron 30.0%
ACGACAAGAAAAATGTTGAA+AGG - tig0024351:1639-1658 None:intergenic 30.0%
! AGATTGAGAATTTTACTCAG+AGG + tig0024351:1845-1864 Msa1416370:CDS 30.0%
! GATTGAGAATTTTACTCAGA+GGG + tig0024351:1846-1865 Msa1416370:CDS 30.0%
ATCAGGGAAAACAATGTTTA+AGG + tig0024351:1985-2004 Msa1416370:CDS 30.0%
!!! ATCTGTAGCATTTTAGTTTG+AGG + tig0024351:2493-2512 Msa1416370:three_prime_UTR 30.0%
!!! TCTGTAGCATTTTAGTTTGA+GGG + tig0024351:2494-2513 Msa1416370:three_prime_UTR 30.0%
!!! CTTTTTCAACCGAAAACATG+TGG + tig0024351:270-289 Msa1416370:five_prime_UTR 35.0%
TCCAAATGCGCTGAATATAA+CGG - tig0024351:406-425 None:intergenic 35.0%
!! CGCGCATTTCAAATTTTGAT+TGG + tig0024351:442-461 Msa1416370:five_prime_UTR 35.0%
CAACAATCAGAAAACCTAAC+CGG + tig0024351:568-587 Msa1416370:five_prime_UTR 35.0%
!! TTGAGATGATTTTACCGGTT+AGG - tig0024351:585-604 None:intergenic 35.0%
! AACGGTTGAGATGATTTTAC+CGG - tig0024351:590-609 None:intergenic 35.0%
AGAGCGAAGAAGATGAAAAA+CGG - tig0024351:608-627 None:intergenic 35.0%
! CATTCTGTTTGGTTTCGATT+TGG + tig0024351:758-777 Msa1416370:intron 35.0%
! CTGACATAACTTTTGTGAGA+CGG + tig0024351:1173-1192 Msa1416370:intron 35.0%
! ATAACTTTTGTGAGACGGTT+TGG + tig0024351:1178-1197 Msa1416370:intron 35.0%
! TAACTTTTGTGAGACGGTTT+GGG + tig0024351:1179-1198 Msa1416370:intron 35.0%
AAAACAGCTTAGTCCCTATT+TGG + tig0024351:1294-1313 Msa1416370:intron 35.0%
TAACCAATGTCAGCTCAAAA+AGG + tig0024351:1554-1573 Msa1416370:exon 35.0%
TCAAATAAGCAGGATTCACA+AGG + tig0024351:2141-2160 Msa1416370:intron 35.0%
! ACAAGGAACAGGTTGAAAAA+TGG + tig0024351:2158-2177 Msa1416370:CDS 35.0%
! CTCGTAATGATTAGTCAATG+TGG + tig0024351:2272-2291 Msa1416370:exon 35.0%
ATATACCTAGACATGACATG+AGG - tig0024351:2301-2320 None:intergenic 35.0%
CTAGGTATATGCATAACTCT+TGG + tig0024351:2311-2330 Msa1416370:three_prime_UTR 35.0%
TGCATAACTCTTGGAATACT+TGG + tig0024351:2320-2339 Msa1416370:three_prime_UTR 35.0%
GCATAACTCTTGGAATACTT+GGG + tig0024351:2321-2340 Msa1416370:three_prime_UTR 35.0%
ACAGCCCAATAGAAATGAAT+TGG - tig0024351:2367-2386 None:intergenic 35.0%
!!! CTTTTTCAACCGAAAACATG+TGG + tig0024351:270-289 Msa1416370:five_prime_UTR 35.0%
TCCAAATGCGCTGAATATAA+CGG - tig0024351:406-425 None:intergenic 35.0%
!! CGCGCATTTCAAATTTTGAT+TGG + tig0024351:442-461 Msa1416370:five_prime_UTR 35.0%
CAACAATCAGAAAACCTAAC+CGG + tig0024351:568-587 Msa1416370:five_prime_UTR 35.0%
!! TTGAGATGATTTTACCGGTT+AGG - tig0024351:585-604 None:intergenic 35.0%
! AACGGTTGAGATGATTTTAC+CGG - tig0024351:590-609 None:intergenic 35.0%
AGAGCGAAGAAGATGAAAAA+CGG - tig0024351:608-627 None:intergenic 35.0%
! CATTCTGTTTGGTTTCGATT+TGG + tig0024351:758-777 Msa1416370:intron 35.0%
! CTGACATAACTTTTGTGAGA+CGG + tig0024351:1173-1192 Msa1416370:intron 35.0%
! ATAACTTTTGTGAGACGGTT+TGG + tig0024351:1178-1197 Msa1416370:intron 35.0%
! TAACTTTTGTGAGACGGTTT+GGG + tig0024351:1179-1198 Msa1416370:intron 35.0%
AAAACAGCTTAGTCCCTATT+TGG + tig0024351:1294-1313 Msa1416370:intron 35.0%
TAACCAATGTCAGCTCAAAA+AGG + tig0024351:1554-1573 Msa1416370:exon 35.0%
TCAAATAAGCAGGATTCACA+AGG + tig0024351:2141-2160 Msa1416370:intron 35.0%
! ACAAGGAACAGGTTGAAAAA+TGG + tig0024351:2158-2177 Msa1416370:CDS 35.0%
! CTCGTAATGATTAGTCAATG+TGG + tig0024351:2272-2291 Msa1416370:exon 35.0%
ATATACCTAGACATGACATG+AGG - tig0024351:2301-2320 None:intergenic 35.0%
CTAGGTATATGCATAACTCT+TGG + tig0024351:2311-2330 Msa1416370:three_prime_UTR 35.0%
TGCATAACTCTTGGAATACT+TGG + tig0024351:2320-2339 Msa1416370:three_prime_UTR 35.0%
GCATAACTCTTGGAATACTT+GGG + tig0024351:2321-2340 Msa1416370:three_prime_UTR 35.0%
ACAGCCCAATAGAAATGAAT+TGG - tig0024351:2367-2386 None:intergenic 35.0%
CCAAATGCGCTGAATATAAC+GGG - tig0024351:405-424 None:intergenic 40.0%
CCAAGTTGTGAGAGAAGAAA+AGG - tig0024351:542-561 None:intergenic 40.0%
! CCTTTTCTTCTCTCACAACT+TGG + tig0024351:539-558 Msa1416370:five_prime_UTR 40.0%
! CGGTTAGGTTTTCTGATTGT+TGG - tig0024351:570-589 None:intergenic 40.0%
!! CTTCCTTTTTGAGCTGACAT+TGG - tig0024351:1560-1579 None:intergenic 40.0%
TCAAGGAAACGTATGAAACC+TGG + tig0024351:1596-1615 Msa1416370:CDS 40.0%
CAAGGAAACGTATGAAACCT+GGG + tig0024351:1597-1616 Msa1416370:CDS 40.0%
AAGGAAACGTATGAAACCTG+GGG + tig0024351:1598-1617 Msa1416370:CDS 40.0%
GCGAAAATAACAATTACCCC+AGG - tig0024351:1617-1636 None:intergenic 40.0%
! GGTTTGAGACTAACCAAGTT+GGG + tig0024351:1782-1801 Msa1416370:CDS 40.0%
TATCTGAGCTCTTGGAATCA+GGG + tig0024351:1969-1988 Msa1416370:CDS 40.0%
! AGCATTAGCTTCCTCATTTG+AGG - tig0024351:2218-2237 None:intergenic 40.0%
! TTGGAATACTTGGGCTGTTT+TGG + tig0024351:2330-2349 Msa1416370:three_prime_UTR 40.0%
TATTCATGAGTCACCACGTT+TGG + tig0024351:2430-2449 Msa1416370:three_prime_UTR 40.0%
CCAACAAGATTAACCAAACG+TGG - tig0024351:2446-2465 None:intergenic 40.0%
CCACGTTTGGTTAATCTTGT+TGG + tig0024351:2443-2462 Msa1416370:three_prime_UTR 40.0%
CGTTTGGTTAATCTTGTTGG+AGG + tig0024351:2446-2465 Msa1416370:three_prime_UTR 40.0%
GGTTAATCTTGTTGGAGGTA+TGG + tig0024351:2451-2470 Msa1416370:three_prime_UTR 40.0%
!!! TAGCATTTTAGTTTGAGGGC+TGG + tig0024351:2498-2517 Msa1416370:three_prime_UTR 40.0%
CCAAATGCGCTGAATATAAC+GGG - tig0024351:405-424 None:intergenic 40.0%
CCAAGTTGTGAGAGAAGAAA+AGG - tig0024351:542-561 None:intergenic 40.0%
! CCTTTTCTTCTCTCACAACT+TGG + tig0024351:539-558 Msa1416370:five_prime_UTR 40.0%
! CGGTTAGGTTTTCTGATTGT+TGG - tig0024351:570-589 None:intergenic 40.0%
!! CTTCCTTTTTGAGCTGACAT+TGG - tig0024351:1560-1579 None:intergenic 40.0%
TCAAGGAAACGTATGAAACC+TGG + tig0024351:1596-1615 Msa1416370:CDS 40.0%
CAAGGAAACGTATGAAACCT+GGG + tig0024351:1597-1616 Msa1416370:CDS 40.0%
AAGGAAACGTATGAAACCTG+GGG + tig0024351:1598-1617 Msa1416370:CDS 40.0%
GCGAAAATAACAATTACCCC+AGG - tig0024351:1617-1636 None:intergenic 40.0%
! GGTTTGAGACTAACCAAGTT+GGG + tig0024351:1782-1801 Msa1416370:CDS 40.0%
TATCTGAGCTCTTGGAATCA+GGG + tig0024351:1969-1988 Msa1416370:CDS 40.0%
! AGCATTAGCTTCCTCATTTG+AGG - tig0024351:2218-2237 None:intergenic 40.0%
! TTGGAATACTTGGGCTGTTT+TGG + tig0024351:2330-2349 Msa1416370:three_prime_UTR 40.0%
TATTCATGAGTCACCACGTT+TGG + tig0024351:2430-2449 Msa1416370:three_prime_UTR 40.0%
CCAACAAGATTAACCAAACG+TGG - tig0024351:2446-2465 None:intergenic 40.0%
CCACGTTTGGTTAATCTTGT+TGG + tig0024351:2443-2462 Msa1416370:three_prime_UTR 40.0%
CGTTTGGTTAATCTTGTTGG+AGG + tig0024351:2446-2465 Msa1416370:three_prime_UTR 40.0%
GGTTAATCTTGTTGGAGGTA+TGG + tig0024351:2451-2470 Msa1416370:three_prime_UTR 40.0%
!!! TAGCATTTTAGTTTGAGGGC+TGG + tig0024351:2498-2517 Msa1416370:three_prime_UTR 40.0%
CCCGTTATATTCAGCGCATT+TGG + tig0024351:402-421 Msa1416370:five_prime_UTR 45.0%
! CTGACATTGGTTAAGCCTAC+AGG - tig0024351:1547-1566 None:intergenic 45.0%
GTCAGCTCAAAAAGGAAGCA+TGG + tig0024351:1562-1581 Msa1416370:CDS 45.0%
! CAAAAAGGAAGCATGGACAG+TGG + tig0024351:1569-1588 Msa1416370:CDS 45.0%
ATCGCAGATTGTCCTTGTAC+AGG + tig0024351:1753-1772 Msa1416370:CDS 45.0%
ATTGTCCTTGTACAGGAGGA+AGG + tig0024351:1760-1779 Msa1416370:CDS 45.0%
TTGTCCTTGTACAGGAGGAA+GGG + tig0024351:1761-1780 Msa1416370:CDS 45.0%
! GGGTTTGAGACTAACCAAGT+TGG + tig0024351:1781-1800 Msa1416370:CDS 45.0%
CCATTTCTTCAGACCCAACT+TGG - tig0024351:1798-1817 None:intergenic 45.0%
! CCAAGTTGGGTCTGAAGAAA+TGG + tig0024351:1795-1814 Msa1416370:CDS 45.0%
CTTGTAGGTATCTGAGCTCT+TGG + tig0024351:1961-1980 Msa1416370:intron 45.0%
GTATCTGAGCTCTTGGAATC+AGG + tig0024351:1968-1987 Msa1416370:CDS 45.0%
AAGCAGGATTCACAAGGAAC+AGG + tig0024351:2147-2166 Msa1416370:intron 45.0%
! GGAACAGGTTGAAAAATGGC+AGG + tig0024351:2162-2181 Msa1416370:CDS 45.0%
TGCACTTGATGCCTCAAATG+AGG + tig0024351:2204-2223 Msa1416370:CDS 45.0%
CCCGTTATATTCAGCGCATT+TGG + tig0024351:402-421 Msa1416370:five_prime_UTR 45.0%
! CTGACATTGGTTAAGCCTAC+AGG - tig0024351:1547-1566 None:intergenic 45.0%
GTCAGCTCAAAAAGGAAGCA+TGG + tig0024351:1562-1581 Msa1416370:CDS 45.0%
! CAAAAAGGAAGCATGGACAG+TGG + tig0024351:1569-1588 Msa1416370:CDS 45.0%
ATCGCAGATTGTCCTTGTAC+AGG + tig0024351:1753-1772 Msa1416370:CDS 45.0%
ATTGTCCTTGTACAGGAGGA+AGG + tig0024351:1760-1779 Msa1416370:CDS 45.0%
TTGTCCTTGTACAGGAGGAA+GGG + tig0024351:1761-1780 Msa1416370:CDS 45.0%
! GGGTTTGAGACTAACCAAGT+TGG + tig0024351:1781-1800 Msa1416370:CDS 45.0%
CCATTTCTTCAGACCCAACT+TGG - tig0024351:1798-1817 None:intergenic 45.0%
! CCAAGTTGGGTCTGAAGAAA+TGG + tig0024351:1795-1814 Msa1416370:CDS 45.0%
CTTGTAGGTATCTGAGCTCT+TGG + tig0024351:1961-1980 Msa1416370:intron 45.0%
GTATCTGAGCTCTTGGAATC+AGG + tig0024351:1968-1987 Msa1416370:CDS 45.0%
AAGCAGGATTCACAAGGAAC+AGG + tig0024351:2147-2166 Msa1416370:intron 45.0%
! GGAACAGGTTGAAAAATGGC+AGG + tig0024351:2162-2181 Msa1416370:CDS 45.0%
TGCACTTGATGCCTCAAATG+AGG + tig0024351:2204-2223 Msa1416370:CDS 45.0%
GCAGATTGTCCTTGTACAGG+AGG + tig0024351:1756-1775 Msa1416370:CDS 50.0%
CAAACCCTTCCTCCTGTACA+AGG - tig0024351:1768-1787 None:intergenic 50.0%
GGTTGCCTCATGTCATGTCT+AGG + tig0024351:2293-2312 Msa1416370:three_prime_UTR 50.0%
! GGGCTGGCATTTCAGAAACA+AGG + tig0024351:2514-2533 Msa1416370:three_prime_UTR 50.0%
GCAGATTGTCCTTGTACAGG+AGG + tig0024351:1756-1775 Msa1416370:CDS 50.0%
CAAACCCTTCCTCCTGTACA+AGG - tig0024351:1768-1787 None:intergenic 50.0%
GGTTGCCTCATGTCATGTCT+AGG + tig0024351:2293-2312 Msa1416370:three_prime_UTR 50.0%
! GGGCTGGCATTTCAGAAACA+AGG + tig0024351:2514-2533 Msa1416370:three_prime_UTR 50.0%
GCATGGACAGTGGAGCTTCA+AGG + tig0024351:1579-1598 Msa1416370:CDS 55.0%
GCATGGACAGTGGAGCTTCA+AGG + tig0024351:1579-1598 Msa1416370:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0024351 gene 267 2562 267 ID=Msa1416370;Name=Msa1416370
tig0024351 mRNA 267 2562 267 ID=Msa1416370-mRNA-1;Parent=Msa1416370;Name=Msa1416370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=332|1|1|1|0.75|0.6|5|277|137
tig0024351 exon 267 589 267 ID=Msa1416370-mRNA-1:exon:22915;Parent=Msa1416370-mRNA-1
tig0024351 exon 1551 1619 1551 ID=Msa1416370-mRNA-1:exon:22916;Parent=Msa1416370-mRNA-1
tig0024351 exon 1721 1867 1721 ID=Msa1416370-mRNA-1:exon:22917;Parent=Msa1416370-mRNA-1
tig0024351 exon 1968 2041 1968 ID=Msa1416370-mRNA-1:exon:22918;Parent=Msa1416370-mRNA-1
tig0024351 exon 2153 2562 2153 ID=Msa1416370-mRNA-1:exon:22919;Parent=Msa1416370-mRNA-1
tig0024351 five_prime_UTR 267 589 267 ID=Msa1416370-mRNA-1:five_prime_utr;Parent=Msa1416370-mRNA-1
tig0024351 five_prime_UTR 1551 1559 1551 ID=Msa1416370-mRNA-1:five_prime_utr;Parent=Msa1416370-mRNA-1
tig0024351 CDS 1560 1619 1560 ID=Msa1416370-mRNA-1:cds;Parent=Msa1416370-mRNA-1
tig0024351 CDS 1721 1867 1721 ID=Msa1416370-mRNA-1:cds;Parent=Msa1416370-mRNA-1
tig0024351 CDS 1968 2041 1968 ID=Msa1416370-mRNA-1:cds;Parent=Msa1416370-mRNA-1
tig0024351 CDS 2153 2285 2153 ID=Msa1416370-mRNA-1:cds;Parent=Msa1416370-mRNA-1
tig0024351 three_prime_UTR 2286 2562 2286 ID=Msa1416370-mRNA-1:three_prime_utr;Parent=Msa1416370-mRNA-1
Gene Sequence

>Msa1416370

ATGTCAGCTCAAAAAGGAAGCATGGACAGTGGAGCTTCAAGGAAACGTATGAAACCTGGGGTAGTACAAGAAAAGATTAGAGATGAAGCAGAATCGCAGATTGTCCTTGTACAGGAGGAAGGGTTTGAGACTAACCAAGTTGGGTCTGAAGAAATGGAGCTCAATATTTCTCTTGTTCTTGAGAAGATTGAGAATTTTACTCAGAGGGTATCTGAGCTCTTGGAATCAGGGAAAACAATGTTTAAGGAGCTATGCAATGAATTTGAAGAGAAACTGATTATGATTCACAAGGAACAGGTTGAAAAATGGCAGGAAGAGATCAAAGAACTGCGTGCACTTGATGCCTCAAATGAGGAAGCTAATGCTCTTCTGCAAAATGCACGATATGTACTTCAGCTAACTCGTAATGATTAG

Protein sequence

>Msa1416370

MSAQKGSMDSGASRKRMKPGVVQEKIRDEAESQIVLVQEEGFETNQVGSEEMELNISLVLEKIENFTQRVSELLESGKTMFKELCNEFEEKLIMIHKEQVEKWQEEIKELRALDASNEEANALLQNARYVLQLTRND*